Multiple sequence alignment - TraesCS2B01G382900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G382900 chr2B 100.000 3489 0 0 1 3489 546628130 546631618 0.000000e+00 6444.0
1 TraesCS2B01G382900 chr2B 92.208 847 24 10 1321 2155 546830342 546831158 0.000000e+00 1160.0
2 TraesCS2B01G382900 chr2B 95.630 389 12 4 822 1205 546822880 546823268 1.380000e-173 619.0
3 TraesCS2B01G382900 chr2B 84.526 517 45 21 2149 2636 546780102 546780612 2.440000e-131 479.0
4 TraesCS2B01G382900 chr2B 97.348 264 7 0 276 539 561189745 561190008 1.910000e-122 449.0
5 TraesCS2B01G382900 chr2B 84.894 470 39 17 2193 2636 546831153 546831616 2.470000e-121 446.0
6 TraesCS2B01G382900 chr2D 92.469 2151 89 31 534 2656 468163321 468165426 0.000000e+00 3007.0
7 TraesCS2B01G382900 chr2D 92.505 507 36 2 2687 3192 572703405 572702900 0.000000e+00 725.0
8 TraesCS2B01G382900 chr2D 84.932 292 32 9 1 280 468163039 468163330 5.700000e-73 285.0
9 TraesCS2B01G382900 chr2A 89.232 1458 88 36 1243 2652 608250638 608252074 0.000000e+00 1759.0
10 TraesCS2B01G382900 chr2A 91.461 527 17 9 687 1194 608249883 608250400 0.000000e+00 699.0
11 TraesCS2B01G382900 chr2A 90.719 431 34 4 1760 2185 608258047 608258476 1.410000e-158 569.0
12 TraesCS2B01G382900 chr2A 81.465 437 55 16 2222 2636 608262327 608262759 5.580000e-88 335.0
13 TraesCS2B01G382900 chr2A 94.872 117 4 2 534 648 608249765 608249881 7.690000e-42 182.0
14 TraesCS2B01G382900 chr2A 97.500 40 1 0 1202 1241 608250581 608250620 6.250000e-08 69.4
15 TraesCS2B01G382900 chr5D 91.819 709 48 9 2705 3405 443519993 443519287 0.000000e+00 979.0
16 TraesCS2B01G382900 chr5D 92.829 502 35 1 2692 3192 44062828 44062327 0.000000e+00 726.0
17 TraesCS2B01G382900 chr5D 93.537 294 15 4 3197 3489 533649363 533649653 5.350000e-118 435.0
18 TraesCS2B01G382900 chr5D 92.230 296 17 5 3197 3489 543317529 543317237 6.970000e-112 414.0
19 TraesCS2B01G382900 chr5D 91.892 296 18 5 3197 3489 27952464 27952172 3.240000e-110 409.0
20 TraesCS2B01G382900 chr5D 91.892 296 18 5 3197 3489 495381564 495381856 3.240000e-110 409.0
21 TraesCS2B01G382900 chr7D 92.413 659 42 5 2706 3363 63898489 63897838 0.000000e+00 933.0
22 TraesCS2B01G382900 chr3D 94.251 487 28 0 2706 3192 31949815 31950301 0.000000e+00 745.0
23 TraesCS2B01G382900 chr3D 94.251 487 28 0 2706 3192 289595014 289595500 0.000000e+00 745.0
24 TraesCS2B01G382900 chr3D 93.699 492 29 2 2705 3194 29930969 29930478 0.000000e+00 736.0
25 TraesCS2B01G382900 chr6D 93.878 490 29 1 2706 3194 327344642 327345131 0.000000e+00 737.0
26 TraesCS2B01G382900 chr4D 92.857 504 33 3 2692 3192 451894614 451895117 0.000000e+00 728.0
27 TraesCS2B01G382900 chr4D 91.892 296 18 5 3197 3489 385624269 385624561 3.240000e-110 409.0
28 TraesCS2B01G382900 chr7B 97.004 267 8 0 276 542 296754794 296755060 1.910000e-122 449.0
29 TraesCS2B01G382900 chr4B 97.348 264 7 0 276 539 25394538 25394275 1.910000e-122 449.0
30 TraesCS2B01G382900 chr1B 97.004 267 8 0 274 540 358062003 358061737 1.910000e-122 449.0
31 TraesCS2B01G382900 chr1B 95.956 272 11 0 276 547 559950102 559950373 3.200000e-120 442.0
32 TraesCS2B01G382900 chr1B 96.604 265 9 0 275 539 604835376 604835640 1.150000e-119 440.0
33 TraesCS2B01G382900 chr5B 96.667 270 8 1 274 543 355210871 355210603 6.870000e-122 448.0
34 TraesCS2B01G382900 chr5B 95.324 278 10 2 276 551 531548138 531548414 4.130000e-119 438.0
35 TraesCS2B01G382900 chr3B 96.992 266 8 0 276 541 754259545 754259810 6.870000e-122 448.0
36 TraesCS2B01G382900 chrUn 93.537 294 15 4 3197 3489 455622170 455622460 5.350000e-118 435.0
37 TraesCS2B01G382900 chr1D 93.537 294 15 4 3197 3489 315630229 315629939 5.350000e-118 435.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G382900 chr2B 546628130 546631618 3488 False 6444.00 6444 100.00000 1 3489 1 chr2B.!!$F1 3488
1 TraesCS2B01G382900 chr2B 546830342 546831616 1274 False 803.00 1160 88.55100 1321 2636 2 chr2B.!!$F5 1315
2 TraesCS2B01G382900 chr2B 546780102 546780612 510 False 479.00 479 84.52600 2149 2636 1 chr2B.!!$F2 487
3 TraesCS2B01G382900 chr2D 468163039 468165426 2387 False 1646.00 3007 88.70050 1 2656 2 chr2D.!!$F1 2655
4 TraesCS2B01G382900 chr2D 572702900 572703405 505 True 725.00 725 92.50500 2687 3192 1 chr2D.!!$R1 505
5 TraesCS2B01G382900 chr2A 608249765 608252074 2309 False 677.35 1759 93.26625 534 2652 4 chr2A.!!$F1 2118
6 TraesCS2B01G382900 chr2A 608258047 608262759 4712 False 452.00 569 86.09200 1760 2636 2 chr2A.!!$F2 876
7 TraesCS2B01G382900 chr5D 443519287 443519993 706 True 979.00 979 91.81900 2705 3405 1 chr5D.!!$R3 700
8 TraesCS2B01G382900 chr5D 44062327 44062828 501 True 726.00 726 92.82900 2692 3192 1 chr5D.!!$R2 500
9 TraesCS2B01G382900 chr7D 63897838 63898489 651 True 933.00 933 92.41300 2706 3363 1 chr7D.!!$R1 657
10 TraesCS2B01G382900 chr4D 451894614 451895117 503 False 728.00 728 92.85700 2692 3192 1 chr4D.!!$F2 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
148 153 0.249238 GCACGGCAAAACCATGAACA 60.249 50.0 0.00 0.00 31.42 3.18 F
272 284 0.318869 TTTGCTTGAGCGTGCAATGG 60.319 50.0 8.86 0.00 46.55 3.16 F
1017 1053 0.381801 AAATGGCGGTGATTGCGATC 59.618 50.0 7.02 7.02 30.04 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1566 1796 0.788391 CGTTGTAGAAGTTGTCGCCC 59.212 55.000 0.00 0.00 0.00 6.13 R
1689 1919 1.202382 AGGAATAGTCGCGGCAGTTAC 60.202 52.381 15.58 7.96 0.00 2.50 R
2938 7122 0.099259 TCGTCGTATTCATCGCCGTT 59.901 50.000 0.00 0.00 31.87 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.098982 ACCTCCAACAACAAAATGTTTATGGA 59.901 34.615 18.41 18.41 44.02 3.41
45 46 8.711457 CAACAAAATGTTTATGGATTCCTTGAC 58.289 33.333 3.95 2.77 38.77 3.18
68 69 3.121929 AGTAGAGATCCCAGGCTTTCA 57.878 47.619 0.00 0.00 0.00 2.69
79 80 3.888930 CCCAGGCTTTCAACTTTGTTAGA 59.111 43.478 0.00 0.00 0.00 2.10
105 106 3.937706 AGATCATTGCAGCAAGTAGACAC 59.062 43.478 14.47 9.16 0.00 3.67
109 110 0.599991 TGCAGCAAGTAGACACGGTG 60.600 55.000 6.58 6.58 0.00 4.94
120 121 2.203139 CACGGTGTCCTTGGCACA 60.203 61.111 0.00 3.32 40.26 4.57
131 132 3.169378 TGGCACAATCCTCTGGCA 58.831 55.556 0.00 0.00 40.40 4.92
137 142 1.675310 CAATCCTCTGGCACGGCAA 60.675 57.895 0.00 0.00 32.53 4.52
144 149 1.373246 CTGGCACGGCAAAACCATG 60.373 57.895 0.00 0.00 39.03 3.66
145 150 1.804396 CTGGCACGGCAAAACCATGA 61.804 55.000 0.00 0.00 31.42 3.07
148 153 0.249238 GCACGGCAAAACCATGAACA 60.249 50.000 0.00 0.00 31.42 3.18
149 154 1.605202 GCACGGCAAAACCATGAACAT 60.605 47.619 0.00 0.00 31.42 2.71
151 156 3.129871 CACGGCAAAACCATGAACATTT 58.870 40.909 0.00 0.00 31.42 2.32
152 157 3.059733 CACGGCAAAACCATGAACATTTG 60.060 43.478 0.00 1.45 31.42 2.32
153 158 3.129871 CGGCAAAACCATGAACATTTGT 58.870 40.909 0.00 0.00 39.03 2.83
154 159 3.059733 CGGCAAAACCATGAACATTTGTG 60.060 43.478 0.00 0.00 39.03 3.33
156 161 3.560896 GCAAAACCATGAACATTTGTGCT 59.439 39.130 0.00 0.00 35.68 4.40
157 162 4.318974 GCAAAACCATGAACATTTGTGCTC 60.319 41.667 0.00 0.00 35.68 4.26
159 164 1.068333 ACCATGAACATTTGTGCTCGC 60.068 47.619 0.00 0.00 0.00 5.03
161 166 2.247637 CATGAACATTTGTGCTCGCAG 58.752 47.619 0.00 0.00 0.00 5.18
215 227 1.305219 TTTTGGCCGCGGAATCTCAG 61.305 55.000 33.48 0.00 0.00 3.35
240 252 2.766229 GGGCCAGGAGAGGGAGTC 60.766 72.222 4.39 0.00 0.00 3.36
249 261 1.546961 GAGAGGGAGTCGAAGGACAA 58.453 55.000 0.00 0.00 45.92 3.18
250 262 1.893801 GAGAGGGAGTCGAAGGACAAA 59.106 52.381 0.00 0.00 45.92 2.83
271 283 1.057636 CTTTGCTTGAGCGTGCAATG 58.942 50.000 8.86 7.96 46.55 2.82
272 284 0.318869 TTTGCTTGAGCGTGCAATGG 60.319 50.000 8.86 0.00 46.55 3.16
273 285 1.171549 TTGCTTGAGCGTGCAATGGA 61.172 50.000 0.00 0.00 43.17 3.41
274 286 1.136147 GCTTGAGCGTGCAATGGAG 59.864 57.895 0.00 0.00 0.00 3.86
275 287 1.580845 GCTTGAGCGTGCAATGGAGT 61.581 55.000 0.00 0.00 0.00 3.85
276 288 1.725641 CTTGAGCGTGCAATGGAGTA 58.274 50.000 0.00 0.00 0.00 2.59
277 289 1.394917 CTTGAGCGTGCAATGGAGTAC 59.605 52.381 0.00 0.00 0.00 2.73
278 290 0.608130 TGAGCGTGCAATGGAGTACT 59.392 50.000 0.00 0.00 0.00 2.73
279 291 1.281899 GAGCGTGCAATGGAGTACTC 58.718 55.000 14.87 14.87 0.00 2.59
289 301 3.592546 GGAGTACTCCCTCCGTCTT 57.407 57.895 28.87 0.00 43.94 3.01
290 302 1.849977 GGAGTACTCCCTCCGTCTTT 58.150 55.000 28.87 0.00 43.94 2.52
291 303 2.177734 GGAGTACTCCCTCCGTCTTTT 58.822 52.381 28.87 0.00 43.94 2.27
292 304 3.359950 GGAGTACTCCCTCCGTCTTTTA 58.640 50.000 28.87 0.00 43.94 1.52
293 305 3.766051 GGAGTACTCCCTCCGTCTTTTAA 59.234 47.826 28.87 0.00 43.94 1.52
294 306 4.221482 GGAGTACTCCCTCCGTCTTTTAAA 59.779 45.833 28.87 0.00 43.94 1.52
295 307 5.402997 AGTACTCCCTCCGTCTTTTAAAG 57.597 43.478 0.00 0.00 0.00 1.85
296 308 5.082425 AGTACTCCCTCCGTCTTTTAAAGA 58.918 41.667 2.94 2.94 34.51 2.52
297 309 4.538746 ACTCCCTCCGTCTTTTAAAGAG 57.461 45.455 7.74 2.92 38.41 2.85
298 310 3.902467 ACTCCCTCCGTCTTTTAAAGAGT 59.098 43.478 7.74 0.00 38.41 3.24
299 311 4.246458 CTCCCTCCGTCTTTTAAAGAGTG 58.754 47.826 7.74 4.00 38.41 3.51
300 312 3.644738 TCCCTCCGTCTTTTAAAGAGTGT 59.355 43.478 7.74 0.00 38.41 3.55
301 313 4.834496 TCCCTCCGTCTTTTAAAGAGTGTA 59.166 41.667 7.74 0.00 38.41 2.90
302 314 4.928020 CCCTCCGTCTTTTAAAGAGTGTAC 59.072 45.833 7.74 0.00 38.41 2.90
303 315 5.279356 CCCTCCGTCTTTTAAAGAGTGTACT 60.279 44.000 7.74 0.00 38.41 2.73
304 316 6.221659 CCTCCGTCTTTTAAAGAGTGTACTT 58.778 40.000 7.74 0.00 38.41 2.24
305 317 6.365518 CCTCCGTCTTTTAAAGAGTGTACTTC 59.634 42.308 7.74 0.00 38.41 3.01
306 318 6.218746 TCCGTCTTTTAAAGAGTGTACTTCC 58.781 40.000 7.74 0.00 38.41 3.46
307 319 5.987347 CCGTCTTTTAAAGAGTGTACTTCCA 59.013 40.000 7.74 0.00 38.41 3.53
308 320 6.480981 CCGTCTTTTAAAGAGTGTACTTCCAA 59.519 38.462 7.74 0.00 38.41 3.53
309 321 7.342942 CGTCTTTTAAAGAGTGTACTTCCAAC 58.657 38.462 7.74 0.00 38.41 3.77
310 322 7.224167 CGTCTTTTAAAGAGTGTACTTCCAACT 59.776 37.037 7.74 0.00 38.41 3.16
311 323 8.890718 GTCTTTTAAAGAGTGTACTTCCAACTT 58.109 33.333 7.74 0.00 38.41 2.66
312 324 9.457436 TCTTTTAAAGAGTGTACTTCCAACTTT 57.543 29.630 2.94 0.00 32.71 2.66
313 325 9.717892 CTTTTAAAGAGTGTACTTCCAACTTTC 57.282 33.333 0.00 0.00 31.02 2.62
314 326 9.457436 TTTTAAAGAGTGTACTTCCAACTTTCT 57.543 29.630 0.00 0.00 31.02 2.52
315 327 9.457436 TTTAAAGAGTGTACTTCCAACTTTCTT 57.543 29.630 0.00 0.00 31.02 2.52
316 328 6.927294 AAGAGTGTACTTCCAACTTTCTTG 57.073 37.500 0.00 0.00 0.00 3.02
317 329 5.368989 AGAGTGTACTTCCAACTTTCTTGG 58.631 41.667 0.00 0.00 40.87 3.61
318 330 5.130477 AGAGTGTACTTCCAACTTTCTTGGA 59.870 40.000 0.00 0.00 46.08 3.53
327 339 5.961272 TCCAACTTTCTTGGAAAGTCAAAC 58.039 37.500 20.96 0.00 46.34 2.93
328 340 5.714806 TCCAACTTTCTTGGAAAGTCAAACT 59.285 36.000 20.96 7.13 46.34 2.66
329 341 6.210584 TCCAACTTTCTTGGAAAGTCAAACTT 59.789 34.615 20.96 6.56 46.34 2.66
386 398 9.537192 ACATCAACATTTATGCCATCAAATTAG 57.463 29.630 0.00 0.00 0.00 1.73
387 399 9.537192 CATCAACATTTATGCCATCAAATTAGT 57.463 29.630 0.00 0.00 0.00 2.24
390 402 8.971321 CAACATTTATGCCATCAAATTAGTAGC 58.029 33.333 0.00 0.00 0.00 3.58
391 403 8.236585 ACATTTATGCCATCAAATTAGTAGCA 57.763 30.769 0.00 0.00 0.00 3.49
392 404 8.863086 ACATTTATGCCATCAAATTAGTAGCAT 58.137 29.630 0.00 0.00 41.89 3.79
393 405 9.701098 CATTTATGCCATCAAATTAGTAGCATT 57.299 29.630 0.00 0.00 39.89 3.56
396 408 9.791801 TTATGCCATCAAATTAGTAGCATTAGA 57.208 29.630 0.00 0.00 39.89 2.10
397 409 8.874744 ATGCCATCAAATTAGTAGCATTAGAT 57.125 30.769 0.00 0.00 36.10 1.98
398 410 8.696043 TGCCATCAAATTAGTAGCATTAGATT 57.304 30.769 0.00 0.00 0.00 2.40
399 411 8.786898 TGCCATCAAATTAGTAGCATTAGATTC 58.213 33.333 0.00 0.00 0.00 2.52
400 412 8.786898 GCCATCAAATTAGTAGCATTAGATTCA 58.213 33.333 0.00 0.00 0.00 2.57
474 486 9.979578 AATATATTTTTGCACAAACTCAGTCAA 57.020 25.926 0.00 0.00 0.00 3.18
475 487 9.979578 ATATATTTTTGCACAAACTCAGTCAAA 57.020 25.926 0.00 0.00 0.00 2.69
476 488 5.837586 TTTTTGCACAAACTCAGTCAAAC 57.162 34.783 0.00 0.00 0.00 2.93
477 489 4.782019 TTTGCACAAACTCAGTCAAACT 57.218 36.364 0.00 0.00 0.00 2.66
478 490 4.782019 TTGCACAAACTCAGTCAAACTT 57.218 36.364 0.00 0.00 0.00 2.66
479 491 4.782019 TGCACAAACTCAGTCAAACTTT 57.218 36.364 0.00 0.00 0.00 2.66
480 492 4.484236 TGCACAAACTCAGTCAAACTTTG 58.516 39.130 0.00 0.00 0.00 2.77
481 493 4.217334 TGCACAAACTCAGTCAAACTTTGA 59.783 37.500 0.00 0.00 37.33 2.69
482 494 4.795278 GCACAAACTCAGTCAAACTTTGAG 59.205 41.667 4.36 0.00 41.01 3.02
483 495 5.391950 GCACAAACTCAGTCAAACTTTGAGA 60.392 40.000 4.36 0.00 41.01 3.27
484 496 6.678900 GCACAAACTCAGTCAAACTTTGAGAT 60.679 38.462 4.36 0.00 41.01 2.75
485 497 7.467267 GCACAAACTCAGTCAAACTTTGAGATA 60.467 37.037 4.36 0.00 41.01 1.98
486 498 8.066595 CACAAACTCAGTCAAACTTTGAGATAG 58.933 37.037 4.36 5.24 41.01 2.08
487 499 7.770897 ACAAACTCAGTCAAACTTTGAGATAGT 59.229 33.333 4.36 5.79 41.01 2.12
488 500 8.616076 CAAACTCAGTCAAACTTTGAGATAGTT 58.384 33.333 4.36 10.63 41.01 2.24
489 501 8.738645 AACTCAGTCAAACTTTGAGATAGTTT 57.261 30.769 4.36 0.00 44.38 2.66
497 509 5.167303 ACTTTGAGATAGTTTGACCCTCC 57.833 43.478 0.00 0.00 0.00 4.30
498 510 4.597507 ACTTTGAGATAGTTTGACCCTCCA 59.402 41.667 0.00 0.00 0.00 3.86
499 511 5.073144 ACTTTGAGATAGTTTGACCCTCCAA 59.927 40.000 0.00 0.00 0.00 3.53
500 512 4.553330 TGAGATAGTTTGACCCTCCAAC 57.447 45.455 0.00 0.00 0.00 3.77
501 513 3.907474 TGAGATAGTTTGACCCTCCAACA 59.093 43.478 0.00 0.00 0.00 3.33
502 514 4.349636 TGAGATAGTTTGACCCTCCAACAA 59.650 41.667 0.00 0.00 0.00 2.83
503 515 5.163141 TGAGATAGTTTGACCCTCCAACAAA 60.163 40.000 0.00 0.00 0.00 2.83
504 516 5.316987 AGATAGTTTGACCCTCCAACAAAG 58.683 41.667 0.00 0.00 34.86 2.77
505 517 3.382083 AGTTTGACCCTCCAACAAAGT 57.618 42.857 0.00 0.00 34.86 2.66
506 518 3.708451 AGTTTGACCCTCCAACAAAGTT 58.292 40.909 0.00 0.00 34.79 2.66
507 519 3.447229 AGTTTGACCCTCCAACAAAGTTG 59.553 43.478 3.00 3.00 34.79 3.16
508 520 2.065899 TGACCCTCCAACAAAGTTGG 57.934 50.000 20.09 20.09 40.87 3.77
509 521 1.566703 TGACCCTCCAACAAAGTTGGA 59.433 47.619 25.17 25.17 45.61 3.53
510 522 2.024846 TGACCCTCCAACAAAGTTGGAA 60.025 45.455 26.25 12.88 46.85 3.53
511 523 3.028130 GACCCTCCAACAAAGTTGGAAA 58.972 45.455 26.25 10.58 46.85 3.13
512 524 3.641436 GACCCTCCAACAAAGTTGGAAAT 59.359 43.478 26.25 16.98 46.85 2.17
513 525 4.810345 ACCCTCCAACAAAGTTGGAAATA 58.190 39.130 26.25 9.67 46.85 1.40
514 526 4.587262 ACCCTCCAACAAAGTTGGAAATAC 59.413 41.667 26.25 0.00 46.85 1.89
515 527 4.586841 CCCTCCAACAAAGTTGGAAATACA 59.413 41.667 26.25 8.75 46.85 2.29
516 528 5.508994 CCCTCCAACAAAGTTGGAAATACAC 60.509 44.000 26.25 0.00 46.85 2.90
517 529 5.301805 CCTCCAACAAAGTTGGAAATACACT 59.698 40.000 26.25 0.00 46.85 3.55
518 530 6.385649 TCCAACAAAGTTGGAAATACACTC 57.614 37.500 24.83 0.00 44.90 3.51
519 531 6.126409 TCCAACAAAGTTGGAAATACACTCT 58.874 36.000 24.83 0.00 44.90 3.24
520 532 6.605594 TCCAACAAAGTTGGAAATACACTCTT 59.394 34.615 24.83 0.00 44.90 2.85
521 533 7.123547 TCCAACAAAGTTGGAAATACACTCTTT 59.876 33.333 24.83 0.00 44.90 2.52
522 534 8.410141 CCAACAAAGTTGGAAATACACTCTTTA 58.590 33.333 21.24 0.00 42.06 1.85
523 535 9.796120 CAACAAAGTTGGAAATACACTCTTTAA 57.204 29.630 2.05 0.00 0.00 1.52
526 538 9.463443 CAAAGTTGGAAATACACTCTTTAAAGG 57.537 33.333 15.13 8.48 0.00 3.11
527 539 8.990163 AAGTTGGAAATACACTCTTTAAAGGA 57.010 30.769 15.13 1.82 0.00 3.36
528 540 8.392372 AGTTGGAAATACACTCTTTAAAGGAC 57.608 34.615 15.13 0.00 0.00 3.85
529 541 7.172703 AGTTGGAAATACACTCTTTAAAGGACG 59.827 37.037 15.13 6.90 0.00 4.79
530 542 5.935789 TGGAAATACACTCTTTAAAGGACGG 59.064 40.000 15.13 5.64 0.00 4.79
531 543 6.168389 GGAAATACACTCTTTAAAGGACGGA 58.832 40.000 15.13 1.15 0.00 4.69
532 544 6.313164 GGAAATACACTCTTTAAAGGACGGAG 59.687 42.308 15.13 7.51 0.00 4.63
554 566 3.383825 GGGAGTATCTCGTAGCCTTGAAA 59.616 47.826 0.00 0.00 33.73 2.69
556 568 5.416947 GGAGTATCTCGTAGCCTTGAAAAA 58.583 41.667 0.00 0.00 33.73 1.94
557 569 5.520649 GGAGTATCTCGTAGCCTTGAAAAAG 59.479 44.000 0.00 0.00 33.73 2.27
558 570 4.870991 AGTATCTCGTAGCCTTGAAAAAGC 59.129 41.667 0.00 0.00 0.00 3.51
559 571 2.423577 TCTCGTAGCCTTGAAAAAGCC 58.576 47.619 0.00 0.00 0.00 4.35
597 611 5.802451 CACAGCACTGTATGTACTTGTAGAG 59.198 44.000 2.38 0.00 42.83 2.43
648 665 1.208614 GCTGTTCTCCGCAAGCAAG 59.791 57.895 0.00 0.00 0.00 4.01
650 667 1.509644 CTGTTCTCCGCAAGCAAGCA 61.510 55.000 1.32 0.00 0.00 3.91
651 668 1.100463 TGTTCTCCGCAAGCAAGCAA 61.100 50.000 1.32 0.00 0.00 3.91
843 876 4.860881 TTGGGGGTGGCGCCAAAA 62.861 61.111 34.66 17.53 38.28 2.44
848 881 2.661537 GGTGGCGCCAAAAGCAAC 60.662 61.111 34.66 17.19 44.04 4.17
907 940 1.808891 GCCGCTACAAATACCCGTGAT 60.809 52.381 0.00 0.00 0.00 3.06
962 995 2.235650 TCTCTTCTCCATCCAGCAACTG 59.764 50.000 0.00 0.00 0.00 3.16
973 1009 4.049393 GCAACTGGCTCAAGTCGT 57.951 55.556 0.00 0.00 40.25 4.34
1016 1052 0.817013 AAAATGGCGGTGATTGCGAT 59.183 45.000 0.00 0.00 31.75 4.58
1017 1053 0.381801 AAATGGCGGTGATTGCGATC 59.618 50.000 7.02 7.02 30.04 3.69
1018 1054 1.775039 AATGGCGGTGATTGCGATCG 61.775 55.000 11.69 11.69 34.91 3.69
1145 1181 1.229723 GGGGAAGGGGTGGACAGTA 60.230 63.158 0.00 0.00 0.00 2.74
1306 1533 9.965824 ACTATTGGTGCTTAATTAACAATATGC 57.034 29.630 14.50 8.07 32.40 3.14
1341 1568 1.129251 CTGCCATTTCACGTGTAGCTG 59.871 52.381 16.51 11.81 0.00 4.24
1487 1717 5.477607 TCTTATCGTCAAGAAAACTCCCA 57.522 39.130 0.00 0.00 31.63 4.37
1566 1796 1.350193 CCGACTTTGTCATCTCCACG 58.650 55.000 0.00 0.00 32.09 4.94
1729 1959 3.131933 CCTTCTCTTCTCGATCACACCAT 59.868 47.826 0.00 0.00 0.00 3.55
2114 2358 2.829003 CTCCGCGAGCACCTCCTA 60.829 66.667 8.23 0.00 0.00 2.94
2133 2377 1.713297 ACCACTCCTCAAGGTACGTT 58.287 50.000 0.00 0.00 32.92 3.99
2145 2410 0.441145 GGTACGTTCGACATGTTGCC 59.559 55.000 8.34 0.00 0.00 4.52
2165 2434 1.410882 CCATGCATGCATCATTGTGGA 59.589 47.619 30.07 0.00 33.90 4.02
2197 2477 1.083401 CACTTTCTGTGTCGCGTGC 60.083 57.895 5.77 0.57 41.53 5.34
2198 2478 1.520564 ACTTTCTGTGTCGCGTGCA 60.521 52.632 5.77 3.73 0.00 4.57
2338 6480 1.166531 GCAAGTTCAAGGCCACGTCT 61.167 55.000 5.01 0.00 0.00 4.18
2354 6496 2.894126 ACGTCTGACAAGATGGAGTTCT 59.106 45.455 8.73 0.00 42.83 3.01
2375 6517 1.689233 TATGACGGCCAGGGCTTCT 60.689 57.895 19.10 8.44 41.60 2.85
2384 6526 0.329261 CCAGGGCTTCTTGTCCATGA 59.671 55.000 0.00 0.00 44.59 3.07
2386 6528 2.517959 CAGGGCTTCTTGTCCATGAAA 58.482 47.619 0.00 0.00 44.59 2.69
2396 6538 0.669318 GTCCATGAAACTCACCGCGA 60.669 55.000 8.23 0.00 0.00 5.87
2464 6606 2.121963 TGGGGGCTCACCAAGTCT 60.122 61.111 0.00 0.00 42.91 3.24
2474 6616 2.825836 CCAAGTCTGCGGATGCCC 60.826 66.667 0.00 0.00 41.78 5.36
2497 6644 3.433957 GCATCATCTCATGAGCTGATCAC 59.566 47.826 30.19 23.15 40.95 3.06
2500 6647 0.103755 TCTCATGAGCTGATCACCGC 59.896 55.000 18.36 0.00 41.91 5.68
2656 6838 5.074584 TGCGTTCCAAGTGTATGTATGTA 57.925 39.130 0.00 0.00 0.00 2.29
2657 6839 5.666462 TGCGTTCCAAGTGTATGTATGTAT 58.334 37.500 0.00 0.00 0.00 2.29
2658 6840 5.522097 TGCGTTCCAAGTGTATGTATGTATG 59.478 40.000 0.00 0.00 0.00 2.39
2659 6841 5.522460 GCGTTCCAAGTGTATGTATGTATGT 59.478 40.000 0.00 0.00 0.00 2.29
2660 6842 6.698329 GCGTTCCAAGTGTATGTATGTATGTA 59.302 38.462 0.00 0.00 0.00 2.29
2661 6843 7.384115 GCGTTCCAAGTGTATGTATGTATGTAT 59.616 37.037 0.00 0.00 0.00 2.29
2662 6844 8.912658 CGTTCCAAGTGTATGTATGTATGTATC 58.087 37.037 0.00 0.00 0.00 2.24
2663 6845 9.982651 GTTCCAAGTGTATGTATGTATGTATCT 57.017 33.333 0.00 0.00 0.00 1.98
2732 6916 8.598075 GTTGGAAAATTATGCAAGTTCATGATC 58.402 33.333 0.00 0.00 30.90 2.92
2744 6928 6.971184 GCAAGTTCATGATCAATTCCAGTAAG 59.029 38.462 0.00 0.00 0.00 2.34
2778 6962 6.744112 ACTAGAAGAGATACTAGCATGCAAC 58.256 40.000 21.98 4.21 39.47 4.17
2830 7014 2.810852 TGCATAACATCAGCAAACACGA 59.189 40.909 0.00 0.00 34.97 4.35
2922 7106 2.065512 CGGTGTTGATGACGATGTTGA 58.934 47.619 0.00 0.00 0.00 3.18
2926 7110 3.367932 GTGTTGATGACGATGTTGACGAT 59.632 43.478 0.00 0.00 34.70 3.73
2938 7122 2.166254 TGTTGACGATGATCTGCTGCTA 59.834 45.455 0.00 0.00 0.00 3.49
3018 7202 0.790207 GACGAATTTGAGCAGTCGCA 59.210 50.000 0.00 0.00 42.27 5.10
3023 7207 1.308047 ATTTGAGCAGTCGCACACAA 58.692 45.000 0.00 0.00 38.53 3.33
3054 7238 5.246307 CAAAAACCTAATTCGTCCTCTCCT 58.754 41.667 0.00 0.00 0.00 3.69
3056 7240 3.383698 ACCTAATTCGTCCTCTCCTGA 57.616 47.619 0.00 0.00 0.00 3.86
3059 7243 3.891977 CCTAATTCGTCCTCTCCTGATGA 59.108 47.826 0.00 0.00 0.00 2.92
3102 7286 4.120244 GAGACCTGCTCTCCCACA 57.880 61.111 0.00 0.00 39.87 4.17
3105 7289 2.524394 ACCTGCTCTCCCACACGT 60.524 61.111 0.00 0.00 0.00 4.49
3106 7290 1.228769 ACCTGCTCTCCCACACGTA 60.229 57.895 0.00 0.00 0.00 3.57
3173 7357 4.619863 GCATGTTGTGAGATGAGGCAAAAT 60.620 41.667 0.00 0.00 0.00 1.82
3174 7358 4.508461 TGTTGTGAGATGAGGCAAAATG 57.492 40.909 0.00 0.00 0.00 2.32
3186 7370 4.237724 GAGGCAAAATGCTAGGTGTTTTC 58.762 43.478 2.00 0.00 44.28 2.29
3187 7371 2.986479 GGCAAAATGCTAGGTGTTTTCG 59.014 45.455 2.00 0.00 44.28 3.46
3188 7372 3.552068 GGCAAAATGCTAGGTGTTTTCGT 60.552 43.478 2.00 0.00 44.28 3.85
3189 7373 4.048504 GCAAAATGCTAGGTGTTTTCGTT 58.951 39.130 0.00 0.00 40.96 3.85
3199 7395 4.915704 AGGTGTTTTCGTTGTATTGTGTG 58.084 39.130 0.00 0.00 0.00 3.82
3200 7396 4.396790 AGGTGTTTTCGTTGTATTGTGTGT 59.603 37.500 0.00 0.00 0.00 3.72
3201 7397 5.096849 GGTGTTTTCGTTGTATTGTGTGTT 58.903 37.500 0.00 0.00 0.00 3.32
3202 7398 5.228427 GGTGTTTTCGTTGTATTGTGTGTTC 59.772 40.000 0.00 0.00 0.00 3.18
3203 7399 5.795939 GTGTTTTCGTTGTATTGTGTGTTCA 59.204 36.000 0.00 0.00 0.00 3.18
3219 7415 3.073678 TGTTCACGATCACAATCCCAAG 58.926 45.455 0.00 0.00 0.00 3.61
3256 7452 7.995289 TCTAATTCGTATACTTACCGGACAAA 58.005 34.615 9.46 0.00 0.00 2.83
3297 7493 8.087750 TCTGGCAAGACATAAAAAGTAAAATGG 58.912 33.333 0.00 0.00 0.00 3.16
3298 7494 6.648725 TGGCAAGACATAAAAAGTAAAATGGC 59.351 34.615 0.00 0.00 0.00 4.40
3299 7495 6.648725 GGCAAGACATAAAAAGTAAAATGGCA 59.351 34.615 0.00 0.00 29.28 4.92
3374 7570 4.204891 GCATGTCGCACGTACGCC 62.205 66.667 16.72 5.77 41.79 5.68
3375 7571 2.506217 CATGTCGCACGTACGCCT 60.506 61.111 16.72 0.00 0.00 5.52
3441 7637 2.668550 GCGTGCGGTCTTCCCTTT 60.669 61.111 0.00 0.00 0.00 3.11
3442 7638 2.677979 GCGTGCGGTCTTCCCTTTC 61.678 63.158 0.00 0.00 0.00 2.62
3443 7639 1.004918 CGTGCGGTCTTCCCTTTCT 60.005 57.895 0.00 0.00 0.00 2.52
3444 7640 1.014564 CGTGCGGTCTTCCCTTTCTC 61.015 60.000 0.00 0.00 0.00 2.87
3445 7641 0.321996 GTGCGGTCTTCCCTTTCTCT 59.678 55.000 0.00 0.00 0.00 3.10
3446 7642 1.056660 TGCGGTCTTCCCTTTCTCTT 58.943 50.000 0.00 0.00 0.00 2.85
3447 7643 1.002087 TGCGGTCTTCCCTTTCTCTTC 59.998 52.381 0.00 0.00 0.00 2.87
3448 7644 1.276705 GCGGTCTTCCCTTTCTCTTCT 59.723 52.381 0.00 0.00 0.00 2.85
3449 7645 2.675603 GCGGTCTTCCCTTTCTCTTCTC 60.676 54.545 0.00 0.00 0.00 2.87
3450 7646 2.563179 CGGTCTTCCCTTTCTCTTCTCA 59.437 50.000 0.00 0.00 0.00 3.27
3451 7647 3.615351 CGGTCTTCCCTTTCTCTTCTCAC 60.615 52.174 0.00 0.00 0.00 3.51
3452 7648 3.325135 GGTCTTCCCTTTCTCTTCTCACA 59.675 47.826 0.00 0.00 0.00 3.58
3453 7649 4.311606 GTCTTCCCTTTCTCTTCTCACAC 58.688 47.826 0.00 0.00 0.00 3.82
3454 7650 3.967326 TCTTCCCTTTCTCTTCTCACACA 59.033 43.478 0.00 0.00 0.00 3.72
3455 7651 3.753294 TCCCTTTCTCTTCTCACACAC 57.247 47.619 0.00 0.00 0.00 3.82
3456 7652 2.368875 TCCCTTTCTCTTCTCACACACC 59.631 50.000 0.00 0.00 0.00 4.16
3457 7653 2.104792 CCCTTTCTCTTCTCACACACCA 59.895 50.000 0.00 0.00 0.00 4.17
3458 7654 3.244700 CCCTTTCTCTTCTCACACACCAT 60.245 47.826 0.00 0.00 0.00 3.55
3459 7655 4.392940 CCTTTCTCTTCTCACACACCATT 58.607 43.478 0.00 0.00 0.00 3.16
3460 7656 4.823989 CCTTTCTCTTCTCACACACCATTT 59.176 41.667 0.00 0.00 0.00 2.32
3461 7657 5.997746 CCTTTCTCTTCTCACACACCATTTA 59.002 40.000 0.00 0.00 0.00 1.40
3462 7658 6.148480 CCTTTCTCTTCTCACACACCATTTAG 59.852 42.308 0.00 0.00 0.00 1.85
3463 7659 6.419484 TTCTCTTCTCACACACCATTTAGA 57.581 37.500 0.00 0.00 0.00 2.10
3464 7660 6.030548 TCTCTTCTCACACACCATTTAGAG 57.969 41.667 0.00 0.00 0.00 2.43
3465 7661 5.540337 TCTCTTCTCACACACCATTTAGAGT 59.460 40.000 0.00 0.00 0.00 3.24
3466 7662 5.541845 TCTTCTCACACACCATTTAGAGTG 58.458 41.667 0.00 0.00 39.93 3.51
3467 7663 5.304357 TCTTCTCACACACCATTTAGAGTGA 59.696 40.000 0.00 0.00 37.43 3.41
3468 7664 5.745312 TCTCACACACCATTTAGAGTGAT 57.255 39.130 0.00 0.00 37.43 3.06
3469 7665 5.482006 TCTCACACACCATTTAGAGTGATG 58.518 41.667 0.00 0.00 37.43 3.07
3470 7666 4.578871 TCACACACCATTTAGAGTGATGG 58.421 43.478 0.00 1.02 46.57 3.51
3471 7667 4.285775 TCACACACCATTTAGAGTGATGGA 59.714 41.667 9.20 0.00 44.49 3.41
3472 7668 4.633126 CACACACCATTTAGAGTGATGGAG 59.367 45.833 9.20 4.10 44.49 3.86
3473 7669 4.532126 ACACACCATTTAGAGTGATGGAGA 59.468 41.667 9.20 0.00 44.49 3.71
3474 7670 5.114780 CACACCATTTAGAGTGATGGAGAG 58.885 45.833 9.20 0.00 44.49 3.20
3475 7671 5.026121 ACACCATTTAGAGTGATGGAGAGA 58.974 41.667 9.20 0.00 44.49 3.10
3476 7672 5.485353 ACACCATTTAGAGTGATGGAGAGAA 59.515 40.000 9.20 0.00 44.49 2.87
3477 7673 5.814705 CACCATTTAGAGTGATGGAGAGAAC 59.185 44.000 9.20 0.00 44.49 3.01
3478 7674 5.104735 ACCATTTAGAGTGATGGAGAGAACC 60.105 44.000 9.20 0.00 44.49 3.62
3479 7675 5.363939 CATTTAGAGTGATGGAGAGAACCC 58.636 45.833 0.00 0.00 0.00 4.11
3480 7676 2.630889 AGAGTGATGGAGAGAACCCA 57.369 50.000 0.00 0.00 38.19 4.51
3481 7677 2.183679 AGAGTGATGGAGAGAACCCAC 58.816 52.381 0.00 0.00 36.36 4.61
3482 7678 2.183679 GAGTGATGGAGAGAACCCACT 58.816 52.381 0.00 0.00 35.98 4.00
3483 7679 3.011821 AGAGTGATGGAGAGAACCCACTA 59.988 47.826 0.00 0.00 34.38 2.74
3484 7680 3.964031 GAGTGATGGAGAGAACCCACTAT 59.036 47.826 0.00 0.00 34.38 2.12
3485 7681 5.103473 AGAGTGATGGAGAGAACCCACTATA 60.103 44.000 0.00 0.00 34.38 1.31
3486 7682 5.721225 AGTGATGGAGAGAACCCACTATAT 58.279 41.667 0.00 0.00 36.36 0.86
3487 7683 6.864421 AGTGATGGAGAGAACCCACTATATA 58.136 40.000 0.00 0.00 36.36 0.86
3488 7684 7.306013 AGTGATGGAGAGAACCCACTATATAA 58.694 38.462 0.00 0.00 36.36 0.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 8.711457 GTCAAGGAATCCATAAACATTTTGTTG 58.289 33.333 0.61 0.00 40.14 3.33
36 37 4.342665 GGGATCTCTACTTCGTCAAGGAAT 59.657 45.833 0.00 0.00 33.37 3.01
45 46 1.698506 AGCCTGGGATCTCTACTTCG 58.301 55.000 0.00 0.00 0.00 3.79
51 52 2.273619 AGTTGAAAGCCTGGGATCTCT 58.726 47.619 0.00 0.00 0.00 3.10
79 80 6.825213 TGTCTACTTGCTGCAATGATCTTAAT 59.175 34.615 16.38 0.00 0.00 1.40
105 106 1.586154 GGATTGTGCCAAGGACACCG 61.586 60.000 9.92 0.00 37.22 4.94
109 110 1.457346 CAGAGGATTGTGCCAAGGAC 58.543 55.000 0.00 0.00 0.00 3.85
114 115 1.303561 GTGCCAGAGGATTGTGCCA 60.304 57.895 0.00 0.00 0.00 4.92
120 121 0.539438 TTTTGCCGTGCCAGAGGATT 60.539 50.000 0.00 0.00 0.00 3.01
121 122 1.074775 TTTTGCCGTGCCAGAGGAT 59.925 52.632 0.00 0.00 0.00 3.24
122 123 1.896660 GTTTTGCCGTGCCAGAGGA 60.897 57.895 0.00 0.00 0.00 3.71
124 125 1.526575 ATGGTTTTGCCGTGCCAGAG 61.527 55.000 0.00 0.00 41.21 3.35
125 126 1.530419 ATGGTTTTGCCGTGCCAGA 60.530 52.632 0.00 0.00 41.21 3.86
126 127 1.373246 CATGGTTTTGCCGTGCCAG 60.373 57.895 0.00 0.00 46.20 4.85
127 128 2.733301 CATGGTTTTGCCGTGCCA 59.267 55.556 0.00 0.00 46.20 4.92
131 132 3.129871 CAAATGTTCATGGTTTTGCCGT 58.870 40.909 0.00 0.00 41.21 5.68
137 142 3.641648 CGAGCACAAATGTTCATGGTTT 58.358 40.909 0.00 0.00 35.89 3.27
144 149 1.135859 CCTCTGCGAGCACAAATGTTC 60.136 52.381 0.00 0.00 32.96 3.18
145 150 0.877071 CCTCTGCGAGCACAAATGTT 59.123 50.000 0.00 0.00 0.00 2.71
148 153 0.610174 TCTCCTCTGCGAGCACAAAT 59.390 50.000 0.00 0.00 0.00 2.32
149 154 0.037882 CTCTCCTCTGCGAGCACAAA 60.038 55.000 0.00 0.00 0.00 2.83
151 156 3.282271 CTCTCCTCTGCGAGCACA 58.718 61.111 0.00 0.00 0.00 4.57
156 161 3.443925 CGTGGCTCTCCTCTGCGA 61.444 66.667 0.00 0.00 0.00 5.10
159 164 4.154347 GGGCGTGGCTCTCCTCTG 62.154 72.222 0.00 0.00 0.00 3.35
215 227 1.613630 TCTCCTGGCCCTCCTTGTC 60.614 63.158 0.00 0.00 0.00 3.18
250 262 1.727511 TTGCACGCTCAAGCAAAGCT 61.728 50.000 2.50 0.00 46.65 3.74
271 283 7.751724 TCTTTAAAAGACGGAGGGAGTACTCC 61.752 46.154 30.72 30.72 42.07 3.85
272 284 5.184671 TCTTTAAAAGACGGAGGGAGTACTC 59.815 44.000 14.87 14.87 32.87 2.59
273 285 5.082425 TCTTTAAAAGACGGAGGGAGTACT 58.918 41.667 0.00 0.00 31.20 2.73
274 286 5.047448 ACTCTTTAAAAGACGGAGGGAGTAC 60.047 44.000 6.42 0.00 33.12 2.73
275 287 5.047519 CACTCTTTAAAAGACGGAGGGAGTA 60.048 44.000 6.42 0.00 33.12 2.59
276 288 3.902467 ACTCTTTAAAAGACGGAGGGAGT 59.098 43.478 6.42 2.00 33.12 3.85
277 289 4.246458 CACTCTTTAAAAGACGGAGGGAG 58.754 47.826 6.42 1.48 33.12 4.30
278 290 3.644738 ACACTCTTTAAAAGACGGAGGGA 59.355 43.478 9.85 0.00 33.12 4.20
279 291 4.004196 ACACTCTTTAAAAGACGGAGGG 57.996 45.455 2.91 2.91 33.12 4.30
280 292 5.780984 AGTACACTCTTTAAAAGACGGAGG 58.219 41.667 0.00 0.03 33.12 4.30
281 293 6.365518 GGAAGTACACTCTTTAAAAGACGGAG 59.634 42.308 0.00 1.07 33.12 4.63
282 294 6.183360 TGGAAGTACACTCTTTAAAAGACGGA 60.183 38.462 0.00 0.00 33.12 4.69
283 295 5.987347 TGGAAGTACACTCTTTAAAAGACGG 59.013 40.000 0.00 0.00 33.12 4.79
284 296 7.224167 AGTTGGAAGTACACTCTTTAAAAGACG 59.776 37.037 0.00 0.00 33.12 4.18
285 297 8.434733 AGTTGGAAGTACACTCTTTAAAAGAC 57.565 34.615 0.00 0.00 33.12 3.01
286 298 9.457436 AAAGTTGGAAGTACACTCTTTAAAAGA 57.543 29.630 0.00 0.00 35.87 2.52
287 299 9.717892 GAAAGTTGGAAGTACACTCTTTAAAAG 57.282 33.333 0.00 0.00 30.46 2.27
288 300 9.457436 AGAAAGTTGGAAGTACACTCTTTAAAA 57.543 29.630 0.00 0.00 30.46 1.52
289 301 9.457436 AAGAAAGTTGGAAGTACACTCTTTAAA 57.543 29.630 0.00 0.00 30.46 1.52
290 302 8.889717 CAAGAAAGTTGGAAGTACACTCTTTAA 58.110 33.333 0.00 0.00 30.46 1.52
291 303 7.497909 CCAAGAAAGTTGGAAGTACACTCTTTA 59.502 37.037 0.00 0.00 42.06 1.85
292 304 6.318900 CCAAGAAAGTTGGAAGTACACTCTTT 59.681 38.462 0.00 0.00 42.06 2.52
293 305 5.823045 CCAAGAAAGTTGGAAGTACACTCTT 59.177 40.000 0.00 0.00 42.06 2.85
294 306 5.130477 TCCAAGAAAGTTGGAAGTACACTCT 59.870 40.000 3.95 0.00 44.90 3.24
295 307 5.365619 TCCAAGAAAGTTGGAAGTACACTC 58.634 41.667 3.95 0.00 44.90 3.51
296 308 5.367945 TCCAAGAAAGTTGGAAGTACACT 57.632 39.130 3.95 0.00 44.90 3.55
304 316 5.714806 AGTTTGACTTTCCAAGAAAGTTGGA 59.285 36.000 20.38 8.42 46.08 3.53
305 317 5.965922 AGTTTGACTTTCCAAGAAAGTTGG 58.034 37.500 20.38 6.05 40.27 3.77
306 318 7.889589 AAAGTTTGACTTTCCAAGAAAGTTG 57.110 32.000 20.38 0.00 44.47 3.16
307 319 8.902540 AAAAAGTTTGACTTTCCAAGAAAGTT 57.097 26.923 20.38 7.70 46.78 2.66
360 372 9.537192 CTAATTTGATGGCATAAATGTTGATGT 57.463 29.630 0.00 0.00 0.00 3.06
361 373 9.537192 ACTAATTTGATGGCATAAATGTTGATG 57.463 29.630 0.00 0.00 0.00 3.07
364 376 8.971321 GCTACTAATTTGATGGCATAAATGTTG 58.029 33.333 0.00 5.40 0.00 3.33
365 377 8.694540 TGCTACTAATTTGATGGCATAAATGTT 58.305 29.630 0.00 0.57 0.00 2.71
366 378 8.236585 TGCTACTAATTTGATGGCATAAATGT 57.763 30.769 0.00 5.58 0.00 2.71
367 379 9.701098 AATGCTACTAATTTGATGGCATAAATG 57.299 29.630 0.00 0.32 37.85 2.32
370 382 9.791801 TCTAATGCTACTAATTTGATGGCATAA 57.208 29.630 0.00 0.00 37.85 1.90
371 383 9.964354 ATCTAATGCTACTAATTTGATGGCATA 57.036 29.630 0.00 0.00 37.85 3.14
372 384 8.874744 ATCTAATGCTACTAATTTGATGGCAT 57.125 30.769 0.00 0.00 40.04 4.40
373 385 8.696043 AATCTAATGCTACTAATTTGATGGCA 57.304 30.769 0.00 0.00 32.33 4.92
374 386 8.786898 TGAATCTAATGCTACTAATTTGATGGC 58.213 33.333 0.00 0.00 32.33 4.40
448 460 9.979578 TTGACTGAGTTTGTGCAAAAATATATT 57.020 25.926 5.11 0.00 31.33 1.28
449 461 9.979578 TTTGACTGAGTTTGTGCAAAAATATAT 57.020 25.926 5.11 0.00 31.33 0.86
450 462 9.243637 GTTTGACTGAGTTTGTGCAAAAATATA 57.756 29.630 5.11 0.00 31.33 0.86
451 463 7.981225 AGTTTGACTGAGTTTGTGCAAAAATAT 59.019 29.630 5.11 0.00 31.33 1.28
452 464 7.319646 AGTTTGACTGAGTTTGTGCAAAAATA 58.680 30.769 5.11 0.00 31.33 1.40
453 465 6.165577 AGTTTGACTGAGTTTGTGCAAAAAT 58.834 32.000 5.11 0.00 31.33 1.82
454 466 5.537188 AGTTTGACTGAGTTTGTGCAAAAA 58.463 33.333 0.00 0.00 31.33 1.94
455 467 5.132897 AGTTTGACTGAGTTTGTGCAAAA 57.867 34.783 0.00 0.00 31.33 2.44
456 468 4.782019 AGTTTGACTGAGTTTGTGCAAA 57.218 36.364 0.00 0.00 0.00 3.68
457 469 4.782019 AAGTTTGACTGAGTTTGTGCAA 57.218 36.364 0.00 0.00 0.00 4.08
458 470 4.217334 TCAAAGTTTGACTGAGTTTGTGCA 59.783 37.500 14.35 0.00 38.17 4.57
459 471 4.732784 TCAAAGTTTGACTGAGTTTGTGC 58.267 39.130 14.35 0.00 38.17 4.57
460 472 6.182039 TCTCAAAGTTTGACTGAGTTTGTG 57.818 37.500 14.35 1.47 38.17 3.33
461 473 7.770897 ACTATCTCAAAGTTTGACTGAGTTTGT 59.229 33.333 14.35 4.81 38.17 2.83
462 474 8.147642 ACTATCTCAAAGTTTGACTGAGTTTG 57.852 34.615 14.35 2.86 38.20 2.93
463 475 8.738645 AACTATCTCAAAGTTTGACTGAGTTT 57.261 30.769 14.35 4.09 38.20 2.66
464 476 8.738645 AAACTATCTCAAAGTTTGACTGAGTT 57.261 30.769 14.35 17.49 43.66 3.01
473 485 6.004574 GGAGGGTCAAACTATCTCAAAGTTT 58.995 40.000 0.00 0.00 45.64 2.66
474 486 5.073144 TGGAGGGTCAAACTATCTCAAAGTT 59.927 40.000 0.00 0.00 38.82 2.66
475 487 4.597507 TGGAGGGTCAAACTATCTCAAAGT 59.402 41.667 0.00 0.00 0.00 2.66
476 488 5.165961 TGGAGGGTCAAACTATCTCAAAG 57.834 43.478 0.00 0.00 0.00 2.77
477 489 5.163141 TGTTGGAGGGTCAAACTATCTCAAA 60.163 40.000 0.00 0.00 0.00 2.69
478 490 4.349636 TGTTGGAGGGTCAAACTATCTCAA 59.650 41.667 0.00 0.00 0.00 3.02
479 491 3.907474 TGTTGGAGGGTCAAACTATCTCA 59.093 43.478 0.00 0.00 0.00 3.27
480 492 4.553330 TGTTGGAGGGTCAAACTATCTC 57.447 45.455 0.00 0.00 0.00 2.75
481 493 4.993705 TTGTTGGAGGGTCAAACTATCT 57.006 40.909 0.00 0.00 0.00 1.98
482 494 5.070685 ACTTTGTTGGAGGGTCAAACTATC 58.929 41.667 0.00 0.00 0.00 2.08
483 495 5.061721 ACTTTGTTGGAGGGTCAAACTAT 57.938 39.130 0.00 0.00 0.00 2.12
484 496 4.513406 ACTTTGTTGGAGGGTCAAACTA 57.487 40.909 0.00 0.00 0.00 2.24
485 497 3.382083 ACTTTGTTGGAGGGTCAAACT 57.618 42.857 0.00 0.00 0.00 2.66
486 498 3.430236 CCAACTTTGTTGGAGGGTCAAAC 60.430 47.826 21.06 0.00 42.06 2.93
487 499 2.763448 CCAACTTTGTTGGAGGGTCAAA 59.237 45.455 21.06 0.00 42.06 2.69
488 500 2.024846 TCCAACTTTGTTGGAGGGTCAA 60.025 45.455 23.38 4.76 43.17 3.18
489 501 1.566703 TCCAACTTTGTTGGAGGGTCA 59.433 47.619 23.38 5.39 43.17 4.02
490 502 2.358322 TCCAACTTTGTTGGAGGGTC 57.642 50.000 23.38 0.00 43.17 4.46
495 507 6.126409 AGAGTGTATTTCCAACTTTGTTGGA 58.874 36.000 23.38 23.38 46.08 3.53
496 508 6.391227 AGAGTGTATTTCCAACTTTGTTGG 57.609 37.500 19.97 19.97 40.87 3.77
497 509 9.796120 TTAAAGAGTGTATTTCCAACTTTGTTG 57.204 29.630 0.00 3.69 31.02 3.33
500 512 9.463443 CCTTTAAAGAGTGTATTTCCAACTTTG 57.537 33.333 16.98 0.00 31.02 2.77
501 513 9.416284 TCCTTTAAAGAGTGTATTTCCAACTTT 57.584 29.630 16.98 0.00 32.26 2.66
502 514 8.847196 GTCCTTTAAAGAGTGTATTTCCAACTT 58.153 33.333 16.98 0.00 0.00 2.66
503 515 7.172703 CGTCCTTTAAAGAGTGTATTTCCAACT 59.827 37.037 16.98 0.00 0.00 3.16
504 516 7.295930 CGTCCTTTAAAGAGTGTATTTCCAAC 58.704 38.462 16.98 0.00 0.00 3.77
505 517 6.428771 CCGTCCTTTAAAGAGTGTATTTCCAA 59.571 38.462 16.98 0.00 0.00 3.53
506 518 5.935789 CCGTCCTTTAAAGAGTGTATTTCCA 59.064 40.000 16.98 0.00 0.00 3.53
507 519 6.168389 TCCGTCCTTTAAAGAGTGTATTTCC 58.832 40.000 16.98 0.00 0.00 3.13
508 520 6.313164 CCTCCGTCCTTTAAAGAGTGTATTTC 59.687 42.308 16.98 0.00 0.00 2.17
509 521 6.171213 CCTCCGTCCTTTAAAGAGTGTATTT 58.829 40.000 16.98 0.00 0.00 1.40
510 522 5.338137 CCCTCCGTCCTTTAAAGAGTGTATT 60.338 44.000 16.98 0.00 0.00 1.89
511 523 4.161754 CCCTCCGTCCTTTAAAGAGTGTAT 59.838 45.833 16.98 0.00 0.00 2.29
512 524 3.512724 CCCTCCGTCCTTTAAAGAGTGTA 59.487 47.826 16.98 0.00 0.00 2.90
513 525 2.302157 CCCTCCGTCCTTTAAAGAGTGT 59.698 50.000 16.98 0.00 0.00 3.55
514 526 2.565834 TCCCTCCGTCCTTTAAAGAGTG 59.434 50.000 16.98 5.33 0.00 3.51
515 527 2.832733 CTCCCTCCGTCCTTTAAAGAGT 59.167 50.000 16.98 0.00 0.00 3.24
516 528 2.832733 ACTCCCTCCGTCCTTTAAAGAG 59.167 50.000 16.98 7.03 0.00 2.85
517 529 2.898662 ACTCCCTCCGTCCTTTAAAGA 58.101 47.619 16.98 0.24 0.00 2.52
518 530 4.650131 AGATACTCCCTCCGTCCTTTAAAG 59.350 45.833 8.32 8.32 0.00 1.85
519 531 4.617593 AGATACTCCCTCCGTCCTTTAAA 58.382 43.478 0.00 0.00 0.00 1.52
520 532 4.213513 GAGATACTCCCTCCGTCCTTTAA 58.786 47.826 0.00 0.00 0.00 1.52
521 533 3.746751 CGAGATACTCCCTCCGTCCTTTA 60.747 52.174 0.00 0.00 0.00 1.85
522 534 2.668625 GAGATACTCCCTCCGTCCTTT 58.331 52.381 0.00 0.00 0.00 3.11
523 535 1.477195 CGAGATACTCCCTCCGTCCTT 60.477 57.143 0.00 0.00 0.00 3.36
524 536 0.108963 CGAGATACTCCCTCCGTCCT 59.891 60.000 0.00 0.00 0.00 3.85
525 537 0.179023 ACGAGATACTCCCTCCGTCC 60.179 60.000 0.00 0.00 0.00 4.79
526 538 2.415776 CTACGAGATACTCCCTCCGTC 58.584 57.143 0.00 0.00 0.00 4.79
527 539 1.542987 GCTACGAGATACTCCCTCCGT 60.543 57.143 0.00 0.00 0.00 4.69
528 540 1.158434 GCTACGAGATACTCCCTCCG 58.842 60.000 0.00 0.00 0.00 4.63
529 541 1.074244 AGGCTACGAGATACTCCCTCC 59.926 57.143 0.00 0.00 0.00 4.30
530 542 2.554893 CAAGGCTACGAGATACTCCCTC 59.445 54.545 0.00 0.00 0.00 4.30
531 543 2.175069 TCAAGGCTACGAGATACTCCCT 59.825 50.000 0.00 0.00 0.00 4.20
532 544 2.584236 TCAAGGCTACGAGATACTCCC 58.416 52.381 0.00 0.00 0.00 4.30
554 566 0.252197 GGGATCGTGGTACTGGCTTT 59.748 55.000 0.00 0.00 0.00 3.51
556 568 1.305802 TGGGATCGTGGTACTGGCT 60.306 57.895 0.00 0.00 0.00 4.75
557 569 1.153429 GTGGGATCGTGGTACTGGC 60.153 63.158 0.00 0.00 0.00 4.85
558 570 0.175760 CTGTGGGATCGTGGTACTGG 59.824 60.000 0.00 0.00 0.00 4.00
559 571 0.460284 GCTGTGGGATCGTGGTACTG 60.460 60.000 0.00 0.00 0.00 2.74
597 611 5.471257 CCTCAAGTTATATCCTCCGTAAGC 58.529 45.833 0.00 0.00 0.00 3.09
627 644 2.684843 GCTTGCGGAGAACAGCCTG 61.685 63.158 0.00 0.00 36.45 4.85
686 703 2.102357 CACGGACGAGATGGACGG 59.898 66.667 0.00 0.00 34.93 4.79
687 704 2.579787 GCACGGACGAGATGGACG 60.580 66.667 0.00 0.00 0.00 4.79
688 705 1.141881 ATGCACGGACGAGATGGAC 59.858 57.895 0.00 0.00 0.00 4.02
712 729 2.392591 CGCGTTGCATTGCATTGC 59.607 55.556 23.33 23.33 38.76 3.56
713 730 2.392591 GCGCGTTGCATTGCATTG 59.607 55.556 12.95 9.08 45.45 2.82
739 756 3.814268 CGCGGGGCATTCAACAGG 61.814 66.667 0.00 0.00 0.00 4.00
807 840 2.396590 ATGATTTACGTCGGTTGGCT 57.603 45.000 0.00 0.00 0.00 4.75
843 876 1.023513 GCATTCGAGCTGAGGTTGCT 61.024 55.000 0.00 0.00 44.24 3.91
962 995 0.248296 CGAGCTAGACGACTTGAGCC 60.248 60.000 6.12 0.00 35.45 4.70
1011 1047 0.800683 CGCTAACAAGGACGATCGCA 60.801 55.000 16.60 0.00 0.00 5.10
1016 1052 2.807895 GCGCGCTAACAAGGACGA 60.808 61.111 26.67 0.00 0.00 4.20
1017 1053 2.809601 AGCGCGCTAACAAGGACG 60.810 61.111 35.79 0.00 0.00 4.79
1018 1054 2.740714 CCAGCGCGCTAACAAGGAC 61.741 63.158 36.02 0.00 0.00 3.85
1204 1415 8.991243 TTTAAGCACTCACATATAAGTACGTT 57.009 30.769 0.00 0.00 0.00 3.99
1306 1533 2.910199 TGGCAGTGATGCTAAAGCTAG 58.090 47.619 3.26 0.00 42.66 3.42
1307 1534 3.565764 ATGGCAGTGATGCTAAAGCTA 57.434 42.857 3.26 0.00 42.66 3.32
1308 1535 2.431954 ATGGCAGTGATGCTAAAGCT 57.568 45.000 3.26 0.00 42.66 3.74
1341 1568 2.805099 CCGCTCTTATCTCTTGGCAATC 59.195 50.000 0.00 0.00 0.00 2.67
1461 1691 7.039882 GGGAGTTTTCTTGACGATAAGATGTA 58.960 38.462 6.88 0.00 36.63 2.29
1462 1692 5.875359 GGGAGTTTTCTTGACGATAAGATGT 59.125 40.000 6.88 0.00 36.63 3.06
1463 1693 5.874810 TGGGAGTTTTCTTGACGATAAGATG 59.125 40.000 6.88 0.00 36.63 2.90
1487 1717 3.938963 CGTATACACTTTGGCCAATGACT 59.061 43.478 31.85 19.68 0.00 3.41
1566 1796 0.788391 CGTTGTAGAAGTTGTCGCCC 59.212 55.000 0.00 0.00 0.00 6.13
1689 1919 1.202382 AGGAATAGTCGCGGCAGTTAC 60.202 52.381 15.58 7.96 0.00 2.50
1762 2003 2.045926 GGTTGCCGAGGACTGCAT 60.046 61.111 0.00 0.00 36.27 3.96
1763 2004 3.555324 TGGTTGCCGAGGACTGCA 61.555 61.111 0.00 0.00 34.68 4.41
1764 2005 3.050275 GTGGTTGCCGAGGACTGC 61.050 66.667 0.00 0.00 0.00 4.40
1765 2006 2.738521 CGTGGTTGCCGAGGACTG 60.739 66.667 0.00 0.00 0.00 3.51
2114 2358 1.617357 GAACGTACCTTGAGGAGTGGT 59.383 52.381 3.59 0.00 38.94 4.16
2145 2410 1.410882 TCCACAATGATGCATGCATGG 59.589 47.619 36.73 29.51 36.70 3.66
2165 2434 1.895131 GAAAGTGTTGGCCATGGTCAT 59.105 47.619 22.11 3.12 0.00 3.06
2354 6496 1.847798 AAGCCCTGGCCGTCATACAA 61.848 55.000 4.13 0.00 43.17 2.41
2375 6517 1.234821 GCGGTGAGTTTCATGGACAA 58.765 50.000 0.00 0.00 0.00 3.18
2384 6526 2.049433 CTCGGTCGCGGTGAGTTT 60.049 61.111 6.13 0.00 0.00 2.66
2485 6627 2.107750 CCGCGGTGATCAGCTCAT 59.892 61.111 19.50 0.00 35.97 2.90
2518 6676 4.201685 CGATCGGTTTAAACAGCTGGTTAG 60.202 45.833 22.71 12.45 39.29 2.34
2520 6678 2.482721 CGATCGGTTTAAACAGCTGGTT 59.517 45.455 22.75 22.75 42.98 3.67
2521 6679 2.073816 CGATCGGTTTAAACAGCTGGT 58.926 47.619 19.93 9.19 0.00 4.00
2523 6681 2.343101 TCCGATCGGTTTAAACAGCTG 58.657 47.619 32.15 13.48 36.47 4.24
2524 6682 2.754946 TCCGATCGGTTTAAACAGCT 57.245 45.000 32.15 7.58 36.47 4.24
2525 6683 2.538939 GCATCCGATCGGTTTAAACAGC 60.539 50.000 32.15 18.44 36.47 4.40
2526 6684 2.675844 TGCATCCGATCGGTTTAAACAG 59.324 45.455 32.15 15.65 36.47 3.16
2527 6685 2.701107 TGCATCCGATCGGTTTAAACA 58.299 42.857 32.15 19.38 36.47 2.83
2528 6686 3.750639 TTGCATCCGATCGGTTTAAAC 57.249 42.857 32.15 17.25 36.47 2.01
2529 6687 4.667262 CATTTGCATCCGATCGGTTTAAA 58.333 39.130 32.15 25.51 36.47 1.52
2530 6688 3.488384 GCATTTGCATCCGATCGGTTTAA 60.488 43.478 32.15 19.72 41.59 1.52
2531 6689 2.032799 GCATTTGCATCCGATCGGTTTA 59.967 45.455 32.15 15.34 41.59 2.01
2532 6690 1.202290 GCATTTGCATCCGATCGGTTT 60.202 47.619 32.15 18.92 41.59 3.27
2604 6786 9.502145 TCTGTTAATTTATTTCGCATGACATTC 57.498 29.630 0.00 0.00 0.00 2.67
2700 6882 9.369904 GAACTTGCATAATTTTCCAACACATAT 57.630 29.630 0.00 0.00 0.00 1.78
2713 6897 8.479689 TGGAATTGATCATGAACTTGCATAATT 58.520 29.630 0.00 0.00 0.00 1.40
2718 6902 4.768448 ACTGGAATTGATCATGAACTTGCA 59.232 37.500 0.00 0.00 0.00 4.08
2818 7002 3.563808 AGCTATTGTTTCGTGTTTGCTGA 59.436 39.130 0.00 0.00 0.00 4.26
2860 7044 6.032956 ACGAACAGTAAGTCCAACATCATA 57.967 37.500 0.00 0.00 0.00 2.15
2873 7057 6.982141 CACCCATAATAGCTAACGAACAGTAA 59.018 38.462 0.00 0.00 0.00 2.24
2879 7063 3.068448 TCGCACCCATAATAGCTAACGAA 59.932 43.478 0.00 0.00 0.00 3.85
2922 7106 1.536922 CCGTTAGCAGCAGATCATCGT 60.537 52.381 0.00 0.00 0.00 3.73
2926 7110 1.519234 CGCCGTTAGCAGCAGATCA 60.519 57.895 0.00 0.00 44.04 2.92
2938 7122 0.099259 TCGTCGTATTCATCGCCGTT 59.901 50.000 0.00 0.00 31.87 4.44
3018 7202 1.134936 GGTTTTTGGGAAGCGTTGTGT 60.135 47.619 0.00 0.00 0.00 3.72
3023 7207 3.057806 CGAATTAGGTTTTTGGGAAGCGT 60.058 43.478 0.00 0.00 32.52 5.07
3054 7238 2.094234 TCGTCTTTGCGATCCTTCATCA 60.094 45.455 0.00 0.00 35.83 3.07
3056 7240 2.672961 TCGTCTTTGCGATCCTTCAT 57.327 45.000 0.00 0.00 35.83 2.57
3059 7243 1.068474 CGTTCGTCTTTGCGATCCTT 58.932 50.000 0.00 0.00 40.76 3.36
3153 7337 3.305539 GCATTTTGCCTCATCTCACAACA 60.306 43.478 0.00 0.00 37.42 3.33
3173 7357 4.817464 ACAATACAACGAAAACACCTAGCA 59.183 37.500 0.00 0.00 0.00 3.49
3174 7358 5.144359 CACAATACAACGAAAACACCTAGC 58.856 41.667 0.00 0.00 0.00 3.42
3186 7370 3.845231 TCGTGAACACACAATACAACG 57.155 42.857 5.80 0.00 34.59 4.10
3187 7371 5.137403 GTGATCGTGAACACACAATACAAC 58.863 41.667 5.51 0.00 37.05 3.32
3188 7372 4.811557 TGTGATCGTGAACACACAATACAA 59.188 37.500 8.64 0.00 41.19 2.41
3189 7373 4.372656 TGTGATCGTGAACACACAATACA 58.627 39.130 8.64 1.58 41.19 2.29
3199 7395 2.159517 GCTTGGGATTGTGATCGTGAAC 60.160 50.000 0.00 0.00 32.84 3.18
3200 7396 2.083774 GCTTGGGATTGTGATCGTGAA 58.916 47.619 0.00 0.00 32.84 3.18
3201 7397 1.678728 GGCTTGGGATTGTGATCGTGA 60.679 52.381 0.00 0.00 32.84 4.35
3202 7398 0.734889 GGCTTGGGATTGTGATCGTG 59.265 55.000 0.00 0.00 32.84 4.35
3203 7399 0.744414 CGGCTTGGGATTGTGATCGT 60.744 55.000 0.00 0.00 32.84 3.73
3256 7452 7.862512 TCTTGCCAGACAAATTTTTGATTTT 57.137 28.000 9.88 0.00 40.55 1.82
3275 7471 7.650834 TGCCATTTTACTTTTTATGTCTTGC 57.349 32.000 0.00 0.00 0.00 4.01
3289 7485 4.083855 GCAGCTTCCTTTTTGCCATTTTAC 60.084 41.667 0.00 0.00 0.00 2.01
3290 7486 4.064388 GCAGCTTCCTTTTTGCCATTTTA 58.936 39.130 0.00 0.00 0.00 1.52
3294 7490 0.037975 CGCAGCTTCCTTTTTGCCAT 60.038 50.000 0.00 0.00 33.10 4.40
3295 7491 1.363443 CGCAGCTTCCTTTTTGCCA 59.637 52.632 0.00 0.00 33.10 4.92
3424 7620 2.668550 AAAGGGAAGACCGCACGC 60.669 61.111 0.00 0.00 46.96 5.34
3425 7621 1.004918 AGAAAGGGAAGACCGCACG 60.005 57.895 0.00 0.00 46.96 5.34
3426 7622 0.321996 AGAGAAAGGGAAGACCGCAC 59.678 55.000 0.00 0.00 46.96 5.34
3427 7623 1.002087 GAAGAGAAAGGGAAGACCGCA 59.998 52.381 0.00 0.00 46.96 5.69
3428 7624 1.276705 AGAAGAGAAAGGGAAGACCGC 59.723 52.381 0.00 0.00 46.96 5.68
3429 7625 2.563179 TGAGAAGAGAAAGGGAAGACCG 59.437 50.000 0.00 0.00 46.96 4.79
3430 7626 3.325135 TGTGAGAAGAGAAAGGGAAGACC 59.675 47.826 0.00 0.00 40.67 3.85
3431 7627 4.202264 TGTGTGAGAAGAGAAAGGGAAGAC 60.202 45.833 0.00 0.00 0.00 3.01
3432 7628 3.967326 TGTGTGAGAAGAGAAAGGGAAGA 59.033 43.478 0.00 0.00 0.00 2.87
3433 7629 4.061596 GTGTGTGAGAAGAGAAAGGGAAG 58.938 47.826 0.00 0.00 0.00 3.46
3434 7630 3.181454 GGTGTGTGAGAAGAGAAAGGGAA 60.181 47.826 0.00 0.00 0.00 3.97
3435 7631 2.368875 GGTGTGTGAGAAGAGAAAGGGA 59.631 50.000 0.00 0.00 0.00 4.20
3436 7632 2.104792 TGGTGTGTGAGAAGAGAAAGGG 59.895 50.000 0.00 0.00 0.00 3.95
3437 7633 3.475566 TGGTGTGTGAGAAGAGAAAGG 57.524 47.619 0.00 0.00 0.00 3.11
3438 7634 6.931281 TCTAAATGGTGTGTGAGAAGAGAAAG 59.069 38.462 0.00 0.00 0.00 2.62
3439 7635 6.826668 TCTAAATGGTGTGTGAGAAGAGAAA 58.173 36.000 0.00 0.00 0.00 2.52
3440 7636 6.042093 ACTCTAAATGGTGTGTGAGAAGAGAA 59.958 38.462 0.00 0.00 33.74 2.87
3441 7637 5.540337 ACTCTAAATGGTGTGTGAGAAGAGA 59.460 40.000 0.00 0.00 33.74 3.10
3442 7638 5.636965 CACTCTAAATGGTGTGTGAGAAGAG 59.363 44.000 0.00 0.00 35.27 2.85
3443 7639 5.304357 TCACTCTAAATGGTGTGTGAGAAGA 59.696 40.000 0.00 0.00 33.57 2.87
3444 7640 5.541845 TCACTCTAAATGGTGTGTGAGAAG 58.458 41.667 0.00 0.00 33.57 2.85
3445 7641 5.545063 TCACTCTAAATGGTGTGTGAGAA 57.455 39.130 0.00 0.00 33.57 2.87
3446 7642 5.482006 CATCACTCTAAATGGTGTGTGAGA 58.518 41.667 0.00 0.00 39.14 3.27
3447 7643 4.633126 CCATCACTCTAAATGGTGTGTGAG 59.367 45.833 0.00 0.00 39.14 3.51
3448 7644 4.285775 TCCATCACTCTAAATGGTGTGTGA 59.714 41.667 0.00 0.00 42.57 3.58
3449 7645 4.578871 TCCATCACTCTAAATGGTGTGTG 58.421 43.478 1.62 0.00 42.57 3.82
3450 7646 4.532126 TCTCCATCACTCTAAATGGTGTGT 59.468 41.667 1.62 0.00 42.57 3.72
3451 7647 5.089970 TCTCCATCACTCTAAATGGTGTG 57.910 43.478 1.62 0.00 42.57 3.82
3452 7648 5.026121 TCTCTCCATCACTCTAAATGGTGT 58.974 41.667 1.62 0.00 42.57 4.16
3453 7649 5.604758 TCTCTCCATCACTCTAAATGGTG 57.395 43.478 1.62 0.00 42.57 4.17
3454 7650 5.104735 GGTTCTCTCCATCACTCTAAATGGT 60.105 44.000 1.62 0.00 42.57 3.55
3455 7651 5.363939 GGTTCTCTCCATCACTCTAAATGG 58.636 45.833 0.00 0.00 43.22 3.16
3456 7652 5.104776 TGGGTTCTCTCCATCACTCTAAATG 60.105 44.000 0.00 0.00 0.00 2.32
3457 7653 5.032846 TGGGTTCTCTCCATCACTCTAAAT 58.967 41.667 0.00 0.00 0.00 1.40
3458 7654 4.223032 GTGGGTTCTCTCCATCACTCTAAA 59.777 45.833 0.00 0.00 36.58 1.85
3459 7655 3.769844 GTGGGTTCTCTCCATCACTCTAA 59.230 47.826 0.00 0.00 36.58 2.10
3460 7656 3.011821 AGTGGGTTCTCTCCATCACTCTA 59.988 47.826 0.00 0.00 36.58 2.43
3461 7657 2.183679 GTGGGTTCTCTCCATCACTCT 58.816 52.381 0.00 0.00 36.58 3.24
3462 7658 2.183679 AGTGGGTTCTCTCCATCACTC 58.816 52.381 0.00 0.00 36.58 3.51
3463 7659 2.334006 AGTGGGTTCTCTCCATCACT 57.666 50.000 0.00 0.00 36.58 3.41
3464 7660 7.540474 TTATATAGTGGGTTCTCTCCATCAC 57.460 40.000 0.00 0.00 36.58 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.