Multiple sequence alignment - TraesCS2B01G382600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G382600 chr2B 100.000 4909 0 0 1 4909 546591461 546586553 0.000000e+00 9066.0
1 TraesCS2B01G382600 chr2B 91.623 191 16 0 284 474 729529598 729529788 1.050000e-66 265.0
2 TraesCS2B01G382600 chr2D 95.576 2871 104 7 813 3662 468103104 468100236 0.000000e+00 4577.0
3 TraesCS2B01G382600 chr2D 92.680 724 31 10 3720 4430 468100236 468099522 0.000000e+00 1024.0
4 TraesCS2B01G382600 chr2D 90.994 322 11 4 475 793 468103473 468103167 7.600000e-113 418.0
5 TraesCS2B01G382600 chr2D 89.668 271 18 7 1 271 468103773 468103513 2.190000e-88 337.0
6 TraesCS2B01G382600 chr2D 91.005 189 17 0 284 472 524947181 524946993 6.310000e-64 255.0
7 TraesCS2B01G382600 chr2D 91.803 183 13 1 270 452 248684594 248684774 2.270000e-63 254.0
8 TraesCS2B01G382600 chr2D 92.647 68 1 2 3664 3727 66821301 66821368 1.450000e-15 95.3
9 TraesCS2B01G382600 chr2D 82.569 109 4 4 4167 4275 467252357 467252264 1.130000e-11 82.4
10 TraesCS2B01G382600 chr2A 94.491 2868 114 13 826 3662 608036187 608033333 0.000000e+00 4381.0
11 TraesCS2B01G382600 chr2A 85.786 598 34 25 3720 4278 608033333 608032748 1.970000e-163 586.0
12 TraesCS2B01G382600 chr2A 92.857 364 21 2 4441 4803 79759226 79758867 1.570000e-144 523.0
13 TraesCS2B01G382600 chr2A 92.308 364 23 2 4441 4803 79761927 79761568 3.390000e-141 512.0
14 TraesCS2B01G382600 chr2A 93.353 331 22 0 4467 4797 580045908 580045578 1.590000e-134 490.0
15 TraesCS2B01G382600 chr2A 93.353 331 22 0 4467 4797 778157180 778156850 1.590000e-134 490.0
16 TraesCS2B01G382600 chr2A 92.260 323 18 4 473 793 608036576 608036259 7.490000e-123 451.0
17 TraesCS2B01G382600 chr2A 88.980 245 23 3 1 245 608037659 608037419 2.870000e-77 300.0
18 TraesCS2B01G382600 chr1D 94.529 329 17 1 4467 4795 131289262 131288935 1.580000e-139 507.0
19 TraesCS2B01G382600 chr6B 93.921 329 20 0 4467 4795 558338643 558338315 9.490000e-137 497.0
20 TraesCS2B01G382600 chr6B 90.155 193 18 1 280 472 218671243 218671052 2.930000e-62 250.0
21 TraesCS2B01G382600 chr6B 98.276 58 0 1 3672 3728 219879396 219879453 3.130000e-17 100.0
22 TraesCS2B01G382600 chr5B 93.902 328 19 1 4467 4794 692123615 692123941 1.230000e-135 494.0
23 TraesCS2B01G382600 chr7D 93.636 330 20 1 4467 4796 548476572 548476244 4.410000e-135 492.0
24 TraesCS2B01G382600 chr7D 91.304 69 6 0 3660 3728 497271252 497271184 1.450000e-15 95.3
25 TraesCS2B01G382600 chr3B 91.036 357 30 2 4440 4796 477330118 477330472 9.560000e-132 481.0
26 TraesCS2B01G382600 chr3B 98.276 58 0 1 3672 3728 17968595 17968652 3.130000e-17 100.0
27 TraesCS2B01G382600 chr7B 92.593 189 14 0 284 472 109030435 109030623 6.260000e-69 272.0
28 TraesCS2B01G382600 chr7B 92.778 180 13 0 277 456 561730573 561730394 1.360000e-65 261.0
29 TraesCS2B01G382600 chr5D 91.534 189 16 0 284 472 475931974 475931786 1.360000e-65 261.0
30 TraesCS2B01G382600 chr5D 96.667 60 1 1 3672 3731 266749405 266749347 1.120000e-16 99.0
31 TraesCS2B01G382600 chr1B 91.351 185 16 0 286 470 191882275 191882091 2.270000e-63 254.0
32 TraesCS2B01G382600 chr1B 90.476 189 18 0 284 472 436287688 436287876 2.930000e-62 250.0
33 TraesCS2B01G382600 chr4B 94.118 68 3 1 3655 3721 43064231 43064298 8.690000e-18 102.0
34 TraesCS2B01G382600 chr4B 91.429 70 4 2 3654 3721 553950911 553950980 1.450000e-15 95.3
35 TraesCS2B01G382600 chr4D 100.000 54 0 0 3672 3725 375381963 375382016 3.130000e-17 100.0
36 TraesCS2B01G382600 chr4A 91.304 69 4 2 3659 3725 632915906 632915974 5.230000e-15 93.5
37 TraesCS2B01G382600 chr3A 100.000 28 0 0 4441 4468 745578018 745578045 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G382600 chr2B 546586553 546591461 4908 True 9066.0 9066 100.00000 1 4909 1 chr2B.!!$R1 4908
1 TraesCS2B01G382600 chr2D 468099522 468103773 4251 True 1589.0 4577 92.22950 1 4430 4 chr2D.!!$R3 4429
2 TraesCS2B01G382600 chr2A 608032748 608037659 4911 True 1429.5 4381 90.37925 1 4278 4 chr2A.!!$R4 4277
3 TraesCS2B01G382600 chr2A 79758867 79761927 3060 True 517.5 523 92.58250 4441 4803 2 chr2A.!!$R3 362

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
314 315 0.106519 CAATGGGAGGTGCTTAGGGG 60.107 60.000 0.00 0.00 0.00 4.79 F
1428 2131 0.027716 GAGCAATGCTGATCGTGCTG 59.972 55.000 14.48 4.56 39.88 4.41 F
1866 2589 0.038310 GGCAGACTAGGGGCAAAACT 59.962 55.000 0.00 0.00 0.00 2.66 F
2474 3199 1.066716 GCATTGATGGGCAAGCTTGAA 60.067 47.619 30.39 14.13 40.42 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1608 2324 0.809241 GCGGACCTGCATTCTCTCTG 60.809 60.0 3.82 0.00 34.15 3.35 R
3012 3737 0.249911 ACTCCGTTGGAAGCTCACAC 60.250 55.0 0.00 0.00 0.00 3.82 R
3103 3828 0.949105 GTCACCTCATCAAACGGCGT 60.949 55.0 6.77 6.77 0.00 5.68 R
4294 5059 0.107459 GTCAGGTTGGAGATGCCCTC 60.107 60.0 0.00 0.00 41.22 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 4.741321 TTACCGTTTATGAGGGTCGAAT 57.259 40.909 0.00 0.00 42.78 3.34
135 136 7.070571 TCACCCCAAATTAGAAGTTGATTGTTT 59.929 33.333 4.11 0.00 36.17 2.83
217 218 0.755327 ACACAAAAGGCCCGAAGCTT 60.755 50.000 0.00 0.00 43.05 3.74
273 274 4.573162 GCTCGTGCTCGTAAGGTT 57.427 55.556 8.17 0.00 38.33 3.50
274 275 2.823628 GCTCGTGCTCGTAAGGTTT 58.176 52.632 8.17 0.00 38.33 3.27
276 277 1.529865 GCTCGTGCTCGTAAGGTTTTT 59.470 47.619 8.17 0.00 38.33 1.94
280 281 2.735134 CGTGCTCGTAAGGTTTTTAGCT 59.265 45.455 0.00 0.00 38.47 3.32
281 282 3.185797 CGTGCTCGTAAGGTTTTTAGCTT 59.814 43.478 0.00 0.00 38.47 3.74
282 283 4.464112 GTGCTCGTAAGGTTTTTAGCTTG 58.536 43.478 0.00 0.00 38.47 4.01
283 284 4.024302 GTGCTCGTAAGGTTTTTAGCTTGT 60.024 41.667 0.00 0.00 38.47 3.16
284 285 4.577283 TGCTCGTAAGGTTTTTAGCTTGTT 59.423 37.500 0.00 0.00 38.47 2.83
285 286 5.759273 TGCTCGTAAGGTTTTTAGCTTGTTA 59.241 36.000 0.00 0.00 38.47 2.41
287 288 6.620089 GCTCGTAAGGTTTTTAGCTTGTTAGG 60.620 42.308 0.00 0.00 38.47 2.69
288 289 5.179929 TCGTAAGGTTTTTAGCTTGTTAGGC 59.820 40.000 0.00 0.00 38.47 3.93
290 291 4.114015 AGGTTTTTAGCTTGTTAGGCCT 57.886 40.909 11.78 11.78 0.00 5.19
291 292 4.480115 AGGTTTTTAGCTTGTTAGGCCTT 58.520 39.130 12.58 0.00 0.00 4.35
292 293 4.280929 AGGTTTTTAGCTTGTTAGGCCTTG 59.719 41.667 12.58 0.00 0.00 3.61
293 294 4.038763 GGTTTTTAGCTTGTTAGGCCTTGT 59.961 41.667 12.58 0.00 0.00 3.16
294 295 5.242171 GGTTTTTAGCTTGTTAGGCCTTGTA 59.758 40.000 12.58 0.00 0.00 2.41
295 296 5.952526 TTTTAGCTTGTTAGGCCTTGTAC 57.047 39.130 12.58 8.07 0.00 2.90
296 297 4.627284 TTAGCTTGTTAGGCCTTGTACA 57.373 40.909 12.58 10.95 0.00 2.90
297 298 3.502123 AGCTTGTTAGGCCTTGTACAA 57.498 42.857 12.58 17.88 0.00 2.41
299 300 3.758554 AGCTTGTTAGGCCTTGTACAATG 59.241 43.478 12.58 7.68 30.87 2.82
301 302 3.080300 TGTTAGGCCTTGTACAATGGG 57.920 47.619 12.58 14.91 0.00 4.00
302 303 2.645297 TGTTAGGCCTTGTACAATGGGA 59.355 45.455 12.58 0.00 0.00 4.37
303 304 3.279434 GTTAGGCCTTGTACAATGGGAG 58.721 50.000 12.58 1.65 0.00 4.30
305 306 0.331616 GGCCTTGTACAATGGGAGGT 59.668 55.000 16.08 0.00 0.00 3.85
306 307 1.463674 GCCTTGTACAATGGGAGGTG 58.536 55.000 16.08 0.00 0.00 4.00
308 309 1.004745 CCTTGTACAATGGGAGGTGCT 59.995 52.381 9.13 0.00 0.00 4.40
310 311 3.308117 CCTTGTACAATGGGAGGTGCTTA 60.308 47.826 9.13 0.00 0.00 3.09
312 313 2.238646 TGTACAATGGGAGGTGCTTAGG 59.761 50.000 0.00 0.00 0.00 2.69
313 314 0.625849 ACAATGGGAGGTGCTTAGGG 59.374 55.000 0.00 0.00 0.00 3.53
314 315 0.106519 CAATGGGAGGTGCTTAGGGG 60.107 60.000 0.00 0.00 0.00 4.79
315 316 0.253630 AATGGGAGGTGCTTAGGGGA 60.254 55.000 0.00 0.00 0.00 4.81
316 317 0.695803 ATGGGAGGTGCTTAGGGGAG 60.696 60.000 0.00 0.00 0.00 4.30
318 319 1.307084 GGAGGTGCTTAGGGGAGGT 60.307 63.158 0.00 0.00 0.00 3.85
319 320 1.627297 GGAGGTGCTTAGGGGAGGTG 61.627 65.000 0.00 0.00 0.00 4.00
320 321 2.258748 GAGGTGCTTAGGGGAGGTGC 62.259 65.000 0.00 0.00 0.00 5.01
321 322 2.301738 GGTGCTTAGGGGAGGTGCT 61.302 63.158 0.00 0.00 0.00 4.40
322 323 1.685820 GTGCTTAGGGGAGGTGCTT 59.314 57.895 0.00 0.00 0.00 3.91
323 324 0.909623 GTGCTTAGGGGAGGTGCTTA 59.090 55.000 0.00 0.00 0.00 3.09
324 325 1.490910 GTGCTTAGGGGAGGTGCTTAT 59.509 52.381 0.00 0.00 0.00 1.73
327 328 3.240302 GCTTAGGGGAGGTGCTTATAGA 58.760 50.000 0.00 0.00 0.00 1.98
328 329 3.646637 GCTTAGGGGAGGTGCTTATAGAA 59.353 47.826 0.00 0.00 0.00 2.10
329 330 4.102681 GCTTAGGGGAGGTGCTTATAGAAA 59.897 45.833 0.00 0.00 0.00 2.52
331 332 6.013639 GCTTAGGGGAGGTGCTTATAGAAATA 60.014 42.308 0.00 0.00 0.00 1.40
332 333 7.474364 GCTTAGGGGAGGTGCTTATAGAAATAA 60.474 40.741 0.00 0.00 0.00 1.40
333 334 6.841781 AGGGGAGGTGCTTATAGAAATAAA 57.158 37.500 0.00 0.00 0.00 1.40
336 337 7.073725 AGGGGAGGTGCTTATAGAAATAAATCA 59.926 37.037 0.00 0.00 0.00 2.57
337 338 7.391833 GGGGAGGTGCTTATAGAAATAAATCAG 59.608 40.741 0.00 0.00 0.00 2.90
339 340 7.094592 GGAGGTGCTTATAGAAATAAATCAGGC 60.095 40.741 0.00 0.00 0.00 4.85
341 342 6.204882 GGTGCTTATAGAAATAAATCAGGCGT 59.795 38.462 0.00 0.00 0.00 5.68
344 345 7.041372 TGCTTATAGAAATAAATCAGGCGTTCC 60.041 37.037 0.00 0.00 0.00 3.62
345 346 7.173390 GCTTATAGAAATAAATCAGGCGTTCCT 59.827 37.037 0.00 0.00 45.66 3.36
346 347 8.974060 TTATAGAAATAAATCAGGCGTTCCTT 57.026 30.769 0.00 0.00 41.93 3.36
348 349 8.974060 ATAGAAATAAATCAGGCGTTCCTTAA 57.026 30.769 0.00 0.00 41.93 1.85
349 350 7.321745 AGAAATAAATCAGGCGTTCCTTAAG 57.678 36.000 0.00 0.00 41.93 1.85
350 351 5.500645 AATAAATCAGGCGTTCCTTAAGC 57.499 39.130 0.00 0.00 41.93 3.09
351 352 2.489938 AATCAGGCGTTCCTTAAGCA 57.510 45.000 0.00 0.00 41.93 3.91
352 353 1.739067 ATCAGGCGTTCCTTAAGCAC 58.261 50.000 0.00 0.00 41.93 4.40
354 355 1.375523 AGGCGTTCCTTAAGCACCG 60.376 57.895 0.00 0.00 40.66 4.94
355 356 2.396157 GGCGTTCCTTAAGCACCGG 61.396 63.158 0.00 0.00 0.00 5.28
356 357 1.670083 GCGTTCCTTAAGCACCGGT 60.670 57.895 0.00 0.00 0.00 5.28
357 358 1.908066 GCGTTCCTTAAGCACCGGTG 61.908 60.000 30.66 30.66 0.00 4.94
371 372 4.014847 CACCGGTGCTTATTTGTACATG 57.985 45.455 24.02 0.00 0.00 3.21
372 373 3.013921 ACCGGTGCTTATTTGTACATGG 58.986 45.455 6.12 0.00 0.00 3.66
373 374 3.013921 CCGGTGCTTATTTGTACATGGT 58.986 45.455 0.00 0.00 0.00 3.55
374 375 4.193090 CCGGTGCTTATTTGTACATGGTA 58.807 43.478 0.00 0.00 0.00 3.25
375 376 4.272504 CCGGTGCTTATTTGTACATGGTAG 59.727 45.833 0.00 0.00 0.00 3.18
378 379 5.006358 GGTGCTTATTTGTACATGGTAGACG 59.994 44.000 0.00 0.00 0.00 4.18
379 380 4.569162 TGCTTATTTGTACATGGTAGACGC 59.431 41.667 0.00 0.00 0.00 5.19
381 382 5.293569 GCTTATTTGTACATGGTAGACGCTT 59.706 40.000 0.00 0.00 0.00 4.68
382 383 6.477688 GCTTATTTGTACATGGTAGACGCTTA 59.522 38.462 0.00 0.00 0.00 3.09
383 384 7.010738 GCTTATTTGTACATGGTAGACGCTTAA 59.989 37.037 0.00 0.00 0.00 1.85
385 386 5.395682 TTGTACATGGTAGACGCTTAACT 57.604 39.130 0.00 0.00 0.00 2.24
388 389 6.558009 TGTACATGGTAGACGCTTAACTAAG 58.442 40.000 0.00 0.00 36.40 2.18
401 402 5.814764 CTTAACTAAGCGTCTCTCCTGTA 57.185 43.478 0.00 0.00 0.00 2.74
402 403 5.812652 CTTAACTAAGCGTCTCTCCTGTAG 58.187 45.833 0.00 0.00 0.00 2.74
403 404 3.630892 ACTAAGCGTCTCTCCTGTAGA 57.369 47.619 0.00 0.00 0.00 2.59
404 405 3.952931 ACTAAGCGTCTCTCCTGTAGAA 58.047 45.455 0.00 0.00 32.46 2.10
406 407 4.951094 ACTAAGCGTCTCTCCTGTAGAAAT 59.049 41.667 0.00 0.00 32.46 2.17
408 409 5.508200 AAGCGTCTCTCCTGTAGAAATAG 57.492 43.478 0.00 0.00 32.46 1.73
409 410 3.886505 AGCGTCTCTCCTGTAGAAATAGG 59.113 47.826 0.00 0.00 35.36 2.57
410 411 3.551250 GCGTCTCTCCTGTAGAAATAGGC 60.551 52.174 0.00 0.00 34.08 3.93
411 412 3.632604 CGTCTCTCCTGTAGAAATAGGCA 59.367 47.826 0.00 0.00 34.08 4.75
412 413 4.279671 CGTCTCTCCTGTAGAAATAGGCAT 59.720 45.833 0.00 0.00 34.08 4.40
413 414 5.563867 CGTCTCTCCTGTAGAAATAGGCATC 60.564 48.000 0.00 0.00 34.08 3.91
414 415 5.303078 GTCTCTCCTGTAGAAATAGGCATCA 59.697 44.000 0.00 0.00 34.08 3.07
415 416 5.538053 TCTCTCCTGTAGAAATAGGCATCAG 59.462 44.000 0.00 0.00 34.08 2.90
417 418 5.069648 TCTCCTGTAGAAATAGGCATCAGTG 59.930 44.000 0.00 0.00 34.08 3.66
432 433 5.987264 CATCAGTGCTTCAGAAAAATTCG 57.013 39.130 0.00 0.00 34.02 3.34
433 434 4.488126 TCAGTGCTTCAGAAAAATTCGG 57.512 40.909 0.00 0.00 34.02 4.30
434 435 3.882888 TCAGTGCTTCAGAAAAATTCGGT 59.117 39.130 0.00 0.00 34.02 4.69
435 436 4.338118 TCAGTGCTTCAGAAAAATTCGGTT 59.662 37.500 0.00 0.00 34.02 4.44
436 437 5.043248 CAGTGCTTCAGAAAAATTCGGTTT 58.957 37.500 0.00 0.00 34.02 3.27
437 438 6.038825 TCAGTGCTTCAGAAAAATTCGGTTTA 59.961 34.615 0.00 0.00 34.02 2.01
438 439 6.863126 CAGTGCTTCAGAAAAATTCGGTTTAT 59.137 34.615 0.00 0.00 34.02 1.40
442 443 9.103861 TGCTTCAGAAAAATTCGGTTTATTTTT 57.896 25.926 0.00 0.00 43.90 1.94
450 451 9.923786 AAAAATTCGGTTTATTTTTGTAAGCAC 57.076 25.926 0.00 0.00 41.28 4.40
453 454 6.004408 TCGGTTTATTTTTGTAAGCACCTC 57.996 37.500 0.00 0.00 0.00 3.85
454 455 5.048573 TCGGTTTATTTTTGTAAGCACCTCC 60.049 40.000 0.00 0.00 0.00 4.30
458 459 6.926630 TTATTTTTGTAAGCACCTCCCATT 57.073 33.333 0.00 0.00 0.00 3.16
459 460 4.599047 TTTTTGTAAGCACCTCCCATTG 57.401 40.909 0.00 0.00 0.00 2.82
466 467 1.004745 AGCACCTCCCATTGTACAAGG 59.995 52.381 14.65 13.92 0.00 3.61
467 468 1.271926 GCACCTCCCATTGTACAAGGT 60.272 52.381 18.13 13.99 40.97 3.50
468 469 2.711542 CACCTCCCATTGTACAAGGTC 58.288 52.381 18.13 0.00 38.27 3.85
469 470 2.305927 CACCTCCCATTGTACAAGGTCT 59.694 50.000 18.13 0.00 38.27 3.85
470 471 2.986728 ACCTCCCATTGTACAAGGTCTT 59.013 45.455 18.13 0.00 35.42 3.01
471 472 4.019681 CACCTCCCATTGTACAAGGTCTTA 60.020 45.833 18.13 1.13 38.27 2.10
544 1177 2.223377 CGTTAATTTCGCCAGCCTATCC 59.777 50.000 0.00 0.00 0.00 2.59
680 1316 4.219999 GAGCGCAGAGGGAGGAGC 62.220 72.222 11.47 0.00 0.00 4.70
712 1348 2.280186 GGCGGCTAGGGATTGACG 60.280 66.667 0.00 0.00 0.00 4.35
810 1475 2.277404 GACTCCCTCTCGCCTCCT 59.723 66.667 0.00 0.00 0.00 3.69
811 1476 1.380650 GACTCCCTCTCGCCTCCTT 60.381 63.158 0.00 0.00 0.00 3.36
935 1625 1.358830 CCCAGGCCCATCATCTCCTT 61.359 60.000 0.00 0.00 0.00 3.36
975 1666 1.002069 ATCCCAGCATCCAACTCCAA 58.998 50.000 0.00 0.00 0.00 3.53
1331 2022 2.781911 TCGTCATCGACCTCTCCAG 58.218 57.895 0.00 0.00 41.35 3.86
1350 2041 1.602605 GGTTAGTTGCCACGCCCTT 60.603 57.895 0.00 0.00 0.00 3.95
1353 2044 0.955905 TTAGTTGCCACGCCCTTTTC 59.044 50.000 0.00 0.00 0.00 2.29
1400 2103 4.289245 CATTACCTGGTTGGGGATCAATT 58.711 43.478 3.84 0.00 41.11 2.32
1407 2110 0.977108 TTGGGGATCAATTGGGCTGC 60.977 55.000 5.42 0.00 0.00 5.25
1428 2131 0.027716 GAGCAATGCTGATCGTGCTG 59.972 55.000 14.48 4.56 39.88 4.41
1515 2228 0.749649 ATCGAGATGTGGACCAGAGC 59.250 55.000 0.00 0.00 0.00 4.09
1535 2248 3.437642 ACCATTGGTGAAGTGGTGG 57.562 52.632 7.76 0.00 44.21 4.61
1540 2253 2.282462 GGTGAAGTGGTGGCTGGG 60.282 66.667 0.00 0.00 0.00 4.45
1543 2256 1.852157 TGAAGTGGTGGCTGGGGAT 60.852 57.895 0.00 0.00 0.00 3.85
1595 2311 0.969894 AGTAGTTTCACCGAGCTGCT 59.030 50.000 0.00 0.00 0.00 4.24
1608 2324 0.386838 AGCTGCTTGTGGTTCTTTGC 59.613 50.000 0.00 0.00 0.00 3.68
1627 2343 0.809241 CAGAGAGAATGCAGGTCCGC 60.809 60.000 0.00 0.00 0.00 5.54
1636 2352 0.473755 TGCAGGTCCGCATCCAATAT 59.526 50.000 4.55 0.00 36.86 1.28
1656 2372 4.816786 ATTGGTGCTTCATTTTGTTTGC 57.183 36.364 0.00 0.00 0.00 3.68
1668 2384 5.974751 TCATTTTGTTTGCGTAGAAAGAACC 59.025 36.000 0.00 0.00 0.00 3.62
1685 2401 5.923733 AGAACCAGTAGACGATCTGATTT 57.076 39.130 0.00 0.00 34.02 2.17
1686 2402 5.897050 AGAACCAGTAGACGATCTGATTTC 58.103 41.667 0.00 0.00 34.02 2.17
1696 2412 6.936279 AGACGATCTGATTTCTGTCCTTTAA 58.064 36.000 0.00 0.00 0.00 1.52
1712 2428 4.219944 TCCTTTAACTGTGCTGATCGTACT 59.780 41.667 7.14 0.00 0.00 2.73
1751 2467 3.208915 GAAGCTTGCCTTCTTGCTTAC 57.791 47.619 2.10 0.00 45.27 2.34
1866 2589 0.038310 GGCAGACTAGGGGCAAAACT 59.962 55.000 0.00 0.00 0.00 2.66
1954 2678 9.241317 CTATGCCATAAGAAAATAACAGCTTTG 57.759 33.333 0.00 0.00 0.00 2.77
2197 2922 4.970472 AATTAGTGTGCGTTGCATTTTG 57.030 36.364 0.00 0.00 41.91 2.44
2474 3199 1.066716 GCATTGATGGGCAAGCTTGAA 60.067 47.619 30.39 14.13 40.42 2.69
2604 3329 5.370679 TGAATACATGTGATCCTGGTGATG 58.629 41.667 9.11 0.00 32.41 3.07
3012 3737 4.218200 TGTCCCAGATGCAAAGTTAATGTG 59.782 41.667 0.00 0.00 0.00 3.21
3103 3828 4.901849 CCTATCACCATCTCTTCCCTGTAA 59.098 45.833 0.00 0.00 0.00 2.41
3199 3924 7.012044 GTCTCATTAACACCGGTATGCTTAAAT 59.988 37.037 6.87 0.00 0.00 1.40
3219 3944 4.640771 ATACATCTCCGCCCAAATATGT 57.359 40.909 0.00 0.00 0.00 2.29
3222 3947 2.799126 TCTCCGCCCAAATATGTTGT 57.201 45.000 0.00 0.00 0.00 3.32
3308 4034 8.561738 TGTGTTAGAAAAGGAGGAATTATCAC 57.438 34.615 0.00 0.00 0.00 3.06
3347 4074 9.271828 CCAGTCTTTGTTGCCTTATTTATTTTT 57.728 29.630 0.00 0.00 0.00 1.94
3349 4076 9.830975 AGTCTTTGTTGCCTTATTTATTTTTGT 57.169 25.926 0.00 0.00 0.00 2.83
3384 4112 9.742144 TTAGTGGTTGTTATTGTGTATACCATT 57.258 29.630 0.00 0.00 36.66 3.16
3512 4240 3.191371 ACCAGCCTTAAATTCTTTCAGCG 59.809 43.478 0.00 0.00 0.00 5.18
3575 4303 2.488153 GTTTCGAGAGTGGGGGAAATTG 59.512 50.000 0.00 0.00 31.80 2.32
3666 4394 8.817092 ATGCTAGTAGGAGTATCTTATTCTCC 57.183 38.462 0.00 4.82 44.51 3.71
3667 4395 7.176490 TGCTAGTAGGAGTATCTTATTCTCCC 58.824 42.308 8.47 0.00 45.07 4.30
3668 4396 7.018751 TGCTAGTAGGAGTATCTTATTCTCCCT 59.981 40.741 8.47 0.00 45.07 4.20
3669 4397 7.555195 GCTAGTAGGAGTATCTTATTCTCCCTC 59.445 44.444 8.47 3.83 45.07 4.30
3670 4398 6.796648 AGTAGGAGTATCTTATTCTCCCTCC 58.203 44.000 8.47 0.00 45.07 4.30
3671 4399 4.668636 AGGAGTATCTTATTCTCCCTCCG 58.331 47.826 8.47 0.00 45.07 4.63
3672 4400 4.106663 AGGAGTATCTTATTCTCCCTCCGT 59.893 45.833 8.47 0.00 45.07 4.69
3673 4401 5.312708 AGGAGTATCTTATTCTCCCTCCGTA 59.687 44.000 8.47 0.00 45.07 4.02
3674 4402 5.415389 GGAGTATCTTATTCTCCCTCCGTAC 59.585 48.000 2.10 0.00 39.98 3.67
3675 4403 5.950023 AGTATCTTATTCTCCCTCCGTACA 58.050 41.667 0.00 0.00 0.00 2.90
3676 4404 6.371278 AGTATCTTATTCTCCCTCCGTACAA 58.629 40.000 0.00 0.00 0.00 2.41
3677 4405 6.837568 AGTATCTTATTCTCCCTCCGTACAAA 59.162 38.462 0.00 0.00 0.00 2.83
3678 4406 5.593679 TCTTATTCTCCCTCCGTACAAAG 57.406 43.478 0.00 0.00 0.00 2.77
3679 4407 5.021458 TCTTATTCTCCCTCCGTACAAAGT 58.979 41.667 0.00 0.00 0.00 2.66
3680 4408 5.482878 TCTTATTCTCCCTCCGTACAAAGTT 59.517 40.000 0.00 0.00 0.00 2.66
3681 4409 6.664816 TCTTATTCTCCCTCCGTACAAAGTTA 59.335 38.462 0.00 0.00 0.00 2.24
3682 4410 4.796038 TTCTCCCTCCGTACAAAGTTAG 57.204 45.455 0.00 0.00 0.00 2.34
3683 4411 3.771216 TCTCCCTCCGTACAAAGTTAGT 58.229 45.455 0.00 0.00 0.00 2.24
3684 4412 4.922206 TCTCCCTCCGTACAAAGTTAGTA 58.078 43.478 0.00 0.00 0.00 1.82
3685 4413 4.702131 TCTCCCTCCGTACAAAGTTAGTAC 59.298 45.833 0.00 0.00 38.71 2.73
3686 4414 4.406456 TCCCTCCGTACAAAGTTAGTACA 58.594 43.478 0.00 0.00 41.40 2.90
3687 4415 4.832266 TCCCTCCGTACAAAGTTAGTACAA 59.168 41.667 0.00 0.00 41.40 2.41
3688 4416 5.304101 TCCCTCCGTACAAAGTTAGTACAAA 59.696 40.000 0.00 0.00 41.40 2.83
3689 4417 5.636543 CCCTCCGTACAAAGTTAGTACAAAG 59.363 44.000 0.00 0.00 41.40 2.77
3690 4418 6.218746 CCTCCGTACAAAGTTAGTACAAAGT 58.781 40.000 0.00 0.00 41.40 2.66
3691 4419 6.703165 CCTCCGTACAAAGTTAGTACAAAGTT 59.297 38.462 0.00 0.00 41.40 2.66
3692 4420 7.306983 CCTCCGTACAAAGTTAGTACAAAGTTG 60.307 40.741 0.00 0.00 41.40 3.16
3693 4421 7.264221 TCCGTACAAAGTTAGTACAAAGTTGA 58.736 34.615 0.00 0.00 41.40 3.18
3694 4422 7.436080 TCCGTACAAAGTTAGTACAAAGTTGAG 59.564 37.037 0.00 0.00 41.40 3.02
3695 4423 7.223387 CCGTACAAAGTTAGTACAAAGTTGAGT 59.777 37.037 0.00 0.00 41.40 3.41
3696 4424 8.264632 CGTACAAAGTTAGTACAAAGTTGAGTC 58.735 37.037 0.00 0.00 41.40 3.36
3697 4425 9.090692 GTACAAAGTTAGTACAAAGTTGAGTCA 57.909 33.333 0.00 0.00 41.08 3.41
3698 4426 7.971455 ACAAAGTTAGTACAAAGTTGAGTCAC 58.029 34.615 0.00 0.00 0.00 3.67
3699 4427 7.822822 ACAAAGTTAGTACAAAGTTGAGTCACT 59.177 33.333 0.00 0.00 0.00 3.41
3700 4428 8.665685 CAAAGTTAGTACAAAGTTGAGTCACTT 58.334 33.333 0.00 0.00 38.74 3.16
3701 4429 9.880157 AAAGTTAGTACAAAGTTGAGTCACTTA 57.120 29.630 0.00 0.00 35.87 2.24
3707 4435 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
3708 4436 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
3709 4437 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
3710 4438 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
3711 4439 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
3712 4440 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
3713 4441 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
3714 4442 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
3715 4443 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
3716 4444 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
3717 4445 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
3718 4446 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
3719 4447 1.961133 TATTTTGGGACGGAGGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
3785 4513 0.758310 TGAACATTGCAGGTGGCCAA 60.758 50.000 7.24 0.00 43.89 4.52
3903 4631 2.095461 AGAGTCAGCGCAGTTCATCTA 58.905 47.619 11.47 0.00 0.00 1.98
3919 4650 1.880271 TCTAGGTAGAGACGCCATCG 58.120 55.000 0.00 0.00 42.43 3.84
3932 4663 0.794229 GCCATCGTGTGCATTGTTCG 60.794 55.000 0.00 0.00 0.00 3.95
4016 4761 5.375417 TTGCTGGATAATCAAACAGTGTG 57.625 39.130 0.00 0.00 33.62 3.82
4018 4763 3.728864 GCTGGATAATCAAACAGTGTGCG 60.729 47.826 0.00 0.00 33.62 5.34
4118 4880 3.006112 TCGAGGTGCTATGAGAAGAGT 57.994 47.619 0.00 0.00 0.00 3.24
4222 4987 3.692791 TCATTCAGTATCGTCACTCGG 57.307 47.619 0.00 0.00 40.32 4.63
4294 5059 4.788925 TTATTAATCCCCTGGTCCACTG 57.211 45.455 0.00 0.00 0.00 3.66
4309 5074 0.393537 CACTGAGGGCATCTCCAACC 60.394 60.000 0.00 0.00 41.76 3.77
4310 5075 0.548682 ACTGAGGGCATCTCCAACCT 60.549 55.000 0.00 0.00 41.76 3.50
4311 5076 0.107312 CTGAGGGCATCTCCAACCTG 60.107 60.000 0.00 0.00 41.76 4.00
4312 5077 0.547471 TGAGGGCATCTCCAACCTGA 60.547 55.000 0.00 0.00 41.76 3.86
4313 5078 0.107459 GAGGGCATCTCCAACCTGAC 60.107 60.000 0.00 0.00 36.52 3.51
4314 5079 1.077429 GGGCATCTCCAACCTGACC 60.077 63.158 0.00 0.00 36.21 4.02
4318 5083 0.108138 CATCTCCAACCTGACCCGTC 60.108 60.000 0.00 0.00 0.00 4.79
4319 5084 1.605058 ATCTCCAACCTGACCCGTCG 61.605 60.000 0.00 0.00 0.00 5.12
4327 5092 2.602267 TGACCCGTCGGTGGACAT 60.602 61.111 11.06 0.00 44.88 3.06
4338 5103 1.867363 GGTGGACATGGGACTAGTCT 58.133 55.000 21.88 1.82 34.34 3.24
4341 5106 1.195115 GGACATGGGACTAGTCTGCA 58.805 55.000 21.88 0.00 34.34 4.41
4344 5109 1.552337 ACATGGGACTAGTCTGCACAG 59.448 52.381 21.88 10.14 0.00 3.66
4376 5141 3.006323 AGAGTCGGTCATCCAATGCTATC 59.994 47.826 0.00 0.00 0.00 2.08
4407 5173 7.117812 TGCTTTCAAATCGGTTTTAAACAAACA 59.882 29.630 10.14 0.10 32.04 2.83
4430 5196 5.437289 GGATGAATTACATGCAAATCGGA 57.563 39.130 0.00 0.00 44.79 4.55
4431 5197 5.215160 GGATGAATTACATGCAAATCGGAC 58.785 41.667 0.00 0.00 44.79 4.79
4432 5198 5.221028 GGATGAATTACATGCAAATCGGACA 60.221 40.000 0.00 0.00 44.79 4.02
4433 5199 5.635417 TGAATTACATGCAAATCGGACAA 57.365 34.783 0.00 0.00 0.00 3.18
4434 5200 6.018589 TGAATTACATGCAAATCGGACAAA 57.981 33.333 0.00 0.00 0.00 2.83
4435 5201 6.450545 TGAATTACATGCAAATCGGACAAAA 58.549 32.000 0.00 0.00 0.00 2.44
4436 5202 6.925718 TGAATTACATGCAAATCGGACAAAAA 59.074 30.769 0.00 0.00 0.00 1.94
4437 5203 6.704512 ATTACATGCAAATCGGACAAAAAC 57.295 33.333 0.00 0.00 0.00 2.43
4438 5204 4.052159 ACATGCAAATCGGACAAAAACA 57.948 36.364 0.00 0.00 0.00 2.83
4439 5205 4.630111 ACATGCAAATCGGACAAAAACAT 58.370 34.783 0.00 0.00 0.00 2.71
4514 5280 1.303309 GCAGATCCAAACCATCTCGG 58.697 55.000 0.00 0.00 42.50 4.63
4536 5302 5.297547 GGCCGTCAAATCATGTTATCTAGA 58.702 41.667 0.00 0.00 0.00 2.43
4570 5336 2.964464 TCCAATGTTGAGCACCAAACAT 59.036 40.909 0.00 0.00 36.36 2.71
4581 5347 3.120041 GCACCAAACATGTTTAACGCTT 58.880 40.909 22.87 0.00 0.00 4.68
4595 8062 7.306953 TGTTTAACGCTTTAATTACCCATCAC 58.693 34.615 0.00 0.00 0.00 3.06
4615 8082 4.155099 TCACTGCCATTGGTTATAAACACG 59.845 41.667 1.72 0.00 0.00 4.49
4620 8087 6.978338 TGCCATTGGTTATAAACACGTTTTA 58.022 32.000 1.72 0.00 34.23 1.52
4641 8109 3.627395 ACTCAACGCTATCCCATGAAA 57.373 42.857 0.00 0.00 0.00 2.69
4645 8113 4.380531 TCAACGCTATCCCATGAAATCTC 58.619 43.478 0.00 0.00 0.00 2.75
4795 8263 6.237648 GCGTTGCACGTACATTATTACTAGTT 60.238 38.462 0.00 0.00 44.73 2.24
4798 8266 7.760131 TGCACGTACATTATTACTAGTTTCC 57.240 36.000 0.00 0.00 0.00 3.13
4810 8278 7.596749 ATTACTAGTTTCCAAAGACATGTCG 57.403 36.000 19.85 6.18 34.09 4.35
4811 8279 4.957296 ACTAGTTTCCAAAGACATGTCGT 58.043 39.130 19.85 14.50 34.09 4.34
4812 8280 5.365619 ACTAGTTTCCAAAGACATGTCGTT 58.634 37.500 19.57 19.57 34.09 3.85
4813 8281 4.813296 AGTTTCCAAAGACATGTCGTTC 57.187 40.909 21.95 11.88 34.09 3.95
4814 8282 4.196193 AGTTTCCAAAGACATGTCGTTCA 58.804 39.130 21.95 10.56 34.09 3.18
4815 8283 4.821805 AGTTTCCAAAGACATGTCGTTCAT 59.178 37.500 21.95 1.31 37.22 2.57
4816 8284 5.049405 AGTTTCCAAAGACATGTCGTTCATC 60.049 40.000 21.95 11.86 34.09 2.92
4817 8285 4.001618 TCCAAAGACATGTCGTTCATCA 57.998 40.909 21.95 5.77 34.09 3.07
4818 8286 3.996363 TCCAAAGACATGTCGTTCATCAG 59.004 43.478 21.95 11.74 34.09 2.90
4819 8287 3.996363 CCAAAGACATGTCGTTCATCAGA 59.004 43.478 21.95 0.00 34.09 3.27
4820 8288 4.633126 CCAAAGACATGTCGTTCATCAGAT 59.367 41.667 21.95 0.00 34.09 2.90
4821 8289 5.122869 CCAAAGACATGTCGTTCATCAGATT 59.877 40.000 21.95 4.17 34.09 2.40
4822 8290 5.791367 AAGACATGTCGTTCATCAGATTG 57.209 39.130 19.85 0.00 34.09 2.67
4823 8291 3.620374 AGACATGTCGTTCATCAGATTGC 59.380 43.478 19.85 0.00 34.09 3.56
4824 8292 2.679837 ACATGTCGTTCATCAGATTGCC 59.320 45.455 0.00 0.00 34.09 4.52
4825 8293 1.358877 TGTCGTTCATCAGATTGCCG 58.641 50.000 0.00 0.00 0.00 5.69
4826 8294 0.652592 GTCGTTCATCAGATTGCCGG 59.347 55.000 0.00 0.00 0.00 6.13
4827 8295 0.249120 TCGTTCATCAGATTGCCGGT 59.751 50.000 1.90 0.00 0.00 5.28
4828 8296 1.478916 TCGTTCATCAGATTGCCGGTA 59.521 47.619 1.90 0.00 0.00 4.02
4829 8297 1.860950 CGTTCATCAGATTGCCGGTAG 59.139 52.381 1.90 0.00 0.00 3.18
4830 8298 2.481276 CGTTCATCAGATTGCCGGTAGA 60.481 50.000 1.90 0.00 0.00 2.59
4831 8299 2.866762 GTTCATCAGATTGCCGGTAGAC 59.133 50.000 1.90 0.00 0.00 2.59
4832 8300 2.388735 TCATCAGATTGCCGGTAGACT 58.611 47.619 1.90 0.00 0.00 3.24
4833 8301 3.562182 TCATCAGATTGCCGGTAGACTA 58.438 45.455 1.90 0.00 0.00 2.59
4834 8302 3.570125 TCATCAGATTGCCGGTAGACTAG 59.430 47.826 1.90 0.00 0.00 2.57
4835 8303 3.014304 TCAGATTGCCGGTAGACTAGT 57.986 47.619 1.90 0.00 0.00 2.57
4836 8304 2.950309 TCAGATTGCCGGTAGACTAGTC 59.050 50.000 15.41 15.41 0.00 2.59
4837 8305 2.952978 CAGATTGCCGGTAGACTAGTCT 59.047 50.000 27.72 27.72 43.40 3.24
4838 8306 4.135306 CAGATTGCCGGTAGACTAGTCTA 58.865 47.826 25.58 25.58 40.93 2.59
4846 8314 2.231215 TAGACTAGTCTACGACCGCC 57.769 55.000 25.58 0.00 40.93 6.13
4847 8315 0.463474 AGACTAGTCTACGACCGCCC 60.463 60.000 24.04 0.00 38.35 6.13
4848 8316 0.463474 GACTAGTCTACGACCGCCCT 60.463 60.000 15.91 0.00 32.18 5.19
4849 8317 0.463474 ACTAGTCTACGACCGCCCTC 60.463 60.000 0.00 0.00 32.18 4.30
4850 8318 0.179051 CTAGTCTACGACCGCCCTCT 60.179 60.000 0.00 0.00 32.18 3.69
4851 8319 0.463295 TAGTCTACGACCGCCCTCTG 60.463 60.000 0.00 0.00 32.18 3.35
4852 8320 2.439701 TCTACGACCGCCCTCTGG 60.440 66.667 0.00 0.00 0.00 3.86
4853 8321 2.439701 CTACGACCGCCCTCTGGA 60.440 66.667 0.00 0.00 0.00 3.86
4854 8322 2.439701 TACGACCGCCCTCTGGAG 60.440 66.667 0.00 0.00 0.00 3.86
4855 8323 2.888464 CTACGACCGCCCTCTGGAGA 62.888 65.000 0.00 0.00 32.25 3.71
4856 8324 2.488771 TACGACCGCCCTCTGGAGAA 62.489 60.000 0.00 0.00 32.25 2.87
4857 8325 2.579738 GACCGCCCTCTGGAGAAC 59.420 66.667 0.00 0.00 32.25 3.01
4858 8326 3.003763 ACCGCCCTCTGGAGAACC 61.004 66.667 0.00 0.00 32.25 3.62
4859 8327 3.003173 CCGCCCTCTGGAGAACCA 61.003 66.667 0.00 0.00 44.76 3.67
4860 8328 2.370445 CCGCCCTCTGGAGAACCAT 61.370 63.158 0.00 0.00 45.87 3.55
4861 8329 1.144936 CGCCCTCTGGAGAACCATC 59.855 63.158 0.00 0.00 45.87 3.51
4862 8330 1.333636 CGCCCTCTGGAGAACCATCT 61.334 60.000 0.00 0.00 45.87 2.90
4863 8331 0.915364 GCCCTCTGGAGAACCATCTT 59.085 55.000 0.00 0.00 45.87 2.40
4864 8332 1.407989 GCCCTCTGGAGAACCATCTTG 60.408 57.143 0.00 0.00 45.87 3.02
4865 8333 1.912043 CCCTCTGGAGAACCATCTTGT 59.088 52.381 0.00 0.00 45.87 3.16
4866 8334 2.307098 CCCTCTGGAGAACCATCTTGTT 59.693 50.000 0.00 0.00 45.87 2.83
4867 8335 3.604582 CCTCTGGAGAACCATCTTGTTC 58.395 50.000 0.00 0.00 45.87 3.18
4881 8349 6.192234 CATCTTGTTCTCCAGATGGAAAAG 57.808 41.667 2.65 5.27 44.91 2.27
4882 8350 5.567037 TCTTGTTCTCCAGATGGAAAAGA 57.433 39.130 2.65 7.28 44.91 2.52
4883 8351 6.131972 TCTTGTTCTCCAGATGGAAAAGAT 57.868 37.500 2.65 0.00 44.91 2.40
4884 8352 6.546484 TCTTGTTCTCCAGATGGAAAAGATT 58.454 36.000 2.65 0.00 44.91 2.40
4885 8353 6.432162 TCTTGTTCTCCAGATGGAAAAGATTG 59.568 38.462 2.65 0.00 44.91 2.67
4886 8354 5.634118 TGTTCTCCAGATGGAAAAGATTGT 58.366 37.500 2.65 0.00 44.91 2.71
4887 8355 5.474532 TGTTCTCCAGATGGAAAAGATTGTG 59.525 40.000 2.65 0.00 44.91 3.33
4888 8356 5.503634 TCTCCAGATGGAAAAGATTGTGA 57.496 39.130 2.65 0.00 44.91 3.58
4889 8357 5.248640 TCTCCAGATGGAAAAGATTGTGAC 58.751 41.667 2.65 0.00 44.91 3.67
4890 8358 4.335416 TCCAGATGGAAAAGATTGTGACC 58.665 43.478 0.00 0.00 42.18 4.02
4891 8359 4.081406 CCAGATGGAAAAGATTGTGACCA 58.919 43.478 0.00 0.00 37.39 4.02
4892 8360 4.157289 CCAGATGGAAAAGATTGTGACCAG 59.843 45.833 0.00 0.00 37.39 4.00
4893 8361 4.157289 CAGATGGAAAAGATTGTGACCAGG 59.843 45.833 0.00 0.00 0.00 4.45
4894 8362 3.874383 TGGAAAAGATTGTGACCAGGA 57.126 42.857 0.00 0.00 0.00 3.86
4895 8363 4.177537 TGGAAAAGATTGTGACCAGGAA 57.822 40.909 0.00 0.00 0.00 3.36
4896 8364 4.541705 TGGAAAAGATTGTGACCAGGAAA 58.458 39.130 0.00 0.00 0.00 3.13
4897 8365 4.959210 TGGAAAAGATTGTGACCAGGAAAA 59.041 37.500 0.00 0.00 0.00 2.29
4898 8366 5.602145 TGGAAAAGATTGTGACCAGGAAAAT 59.398 36.000 0.00 0.00 0.00 1.82
4899 8367 5.928264 GGAAAAGATTGTGACCAGGAAAATG 59.072 40.000 0.00 0.00 0.00 2.32
4900 8368 6.239289 GGAAAAGATTGTGACCAGGAAAATGA 60.239 38.462 0.00 0.00 0.00 2.57
4901 8369 5.972107 AAGATTGTGACCAGGAAAATGAG 57.028 39.130 0.00 0.00 0.00 2.90
4902 8370 4.990526 AGATTGTGACCAGGAAAATGAGT 58.009 39.130 0.00 0.00 0.00 3.41
4903 8371 4.763793 AGATTGTGACCAGGAAAATGAGTG 59.236 41.667 0.00 0.00 0.00 3.51
4904 8372 3.576078 TGTGACCAGGAAAATGAGTGT 57.424 42.857 0.00 0.00 0.00 3.55
4905 8373 3.897239 TGTGACCAGGAAAATGAGTGTT 58.103 40.909 0.00 0.00 0.00 3.32
4906 8374 3.631686 TGTGACCAGGAAAATGAGTGTTG 59.368 43.478 0.00 0.00 0.00 3.33
4907 8375 3.882888 GTGACCAGGAAAATGAGTGTTGA 59.117 43.478 0.00 0.00 0.00 3.18
4908 8376 4.023707 GTGACCAGGAAAATGAGTGTTGAG 60.024 45.833 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.270907 AGGTGAGGCAAGAGGTACAG 58.729 55.000 0.00 0.00 0.00 2.74
94 95 1.600107 GTGACCCCGGATTGCTACA 59.400 57.895 0.73 0.00 0.00 2.74
190 191 5.379732 TCGGGCCTTTTGTGTTAAAATAG 57.620 39.130 0.84 0.00 0.00 1.73
198 199 0.755327 AAGCTTCGGGCCTTTTGTGT 60.755 50.000 0.84 0.00 43.05 3.72
202 203 0.467290 TCACAAGCTTCGGGCCTTTT 60.467 50.000 0.84 0.00 43.05 2.27
206 207 3.435186 GCTCACAAGCTTCGGGCC 61.435 66.667 6.04 0.00 45.55 5.80
217 218 1.741401 AGCGCGCTTTATGCTCACA 60.741 52.632 31.32 0.00 40.11 3.58
271 272 5.196341 ACAAGGCCTAACAAGCTAAAAAC 57.804 39.130 5.16 0.00 0.00 2.43
273 274 5.378332 TGTACAAGGCCTAACAAGCTAAAA 58.622 37.500 5.16 0.00 0.00 1.52
274 275 4.975631 TGTACAAGGCCTAACAAGCTAAA 58.024 39.130 5.16 0.00 0.00 1.85
276 277 4.627284 TTGTACAAGGCCTAACAAGCTA 57.373 40.909 19.16 3.41 0.00 3.32
280 281 3.074687 TCCCATTGTACAAGGCCTAACAA 59.925 43.478 23.09 23.09 36.37 2.83
281 282 2.645297 TCCCATTGTACAAGGCCTAACA 59.355 45.455 14.66 8.72 0.00 2.41
282 283 3.279434 CTCCCATTGTACAAGGCCTAAC 58.721 50.000 14.66 5.69 0.00 2.34
283 284 2.241176 CCTCCCATTGTACAAGGCCTAA 59.759 50.000 14.66 0.00 0.00 2.69
284 285 1.843851 CCTCCCATTGTACAAGGCCTA 59.156 52.381 14.66 1.57 0.00 3.93
285 286 0.625849 CCTCCCATTGTACAAGGCCT 59.374 55.000 14.66 0.00 0.00 5.19
287 288 1.463674 CACCTCCCATTGTACAAGGC 58.536 55.000 14.66 0.00 0.00 4.35
288 289 1.004745 AGCACCTCCCATTGTACAAGG 59.995 52.381 14.65 13.92 0.00 3.61
290 291 2.969821 AAGCACCTCCCATTGTACAA 57.030 45.000 11.41 11.41 0.00 2.41
291 292 2.238646 CCTAAGCACCTCCCATTGTACA 59.761 50.000 0.00 0.00 0.00 2.90
292 293 2.421529 CCCTAAGCACCTCCCATTGTAC 60.422 54.545 0.00 0.00 0.00 2.90
293 294 1.843851 CCCTAAGCACCTCCCATTGTA 59.156 52.381 0.00 0.00 0.00 2.41
294 295 0.625849 CCCTAAGCACCTCCCATTGT 59.374 55.000 0.00 0.00 0.00 2.71
295 296 0.106519 CCCCTAAGCACCTCCCATTG 60.107 60.000 0.00 0.00 0.00 2.82
296 297 0.253630 TCCCCTAAGCACCTCCCATT 60.254 55.000 0.00 0.00 0.00 3.16
297 298 0.695803 CTCCCCTAAGCACCTCCCAT 60.696 60.000 0.00 0.00 0.00 4.00
299 300 2.073101 CCTCCCCTAAGCACCTCCC 61.073 68.421 0.00 0.00 0.00 4.30
301 302 1.908483 CACCTCCCCTAAGCACCTC 59.092 63.158 0.00 0.00 0.00 3.85
302 303 2.301738 GCACCTCCCCTAAGCACCT 61.302 63.158 0.00 0.00 0.00 4.00
303 304 1.853250 AAGCACCTCCCCTAAGCACC 61.853 60.000 0.00 0.00 0.00 5.01
305 306 1.893315 ATAAGCACCTCCCCTAAGCA 58.107 50.000 0.00 0.00 0.00 3.91
306 307 3.240302 TCTATAAGCACCTCCCCTAAGC 58.760 50.000 0.00 0.00 0.00 3.09
308 309 7.941053 TTATTTCTATAAGCACCTCCCCTAA 57.059 36.000 0.00 0.00 0.00 2.69
310 311 6.841781 TTTATTTCTATAAGCACCTCCCCT 57.158 37.500 0.00 0.00 0.00 4.79
312 313 7.391833 CCTGATTTATTTCTATAAGCACCTCCC 59.608 40.741 0.00 0.00 0.00 4.30
313 314 7.094592 GCCTGATTTATTTCTATAAGCACCTCC 60.095 40.741 0.00 0.00 0.00 4.30
314 315 7.360438 CGCCTGATTTATTTCTATAAGCACCTC 60.360 40.741 0.00 0.00 0.00 3.85
315 316 6.428159 CGCCTGATTTATTTCTATAAGCACCT 59.572 38.462 0.00 0.00 0.00 4.00
316 317 6.204882 ACGCCTGATTTATTTCTATAAGCACC 59.795 38.462 0.00 0.00 0.00 5.01
318 319 7.041372 GGAACGCCTGATTTATTTCTATAAGCA 60.041 37.037 0.00 0.00 0.00 3.91
319 320 7.173390 AGGAACGCCTGATTTATTTCTATAAGC 59.827 37.037 0.00 0.00 44.90 3.09
320 321 8.608844 AGGAACGCCTGATTTATTTCTATAAG 57.391 34.615 0.00 0.00 44.90 1.73
321 322 8.974060 AAGGAACGCCTGATTTATTTCTATAA 57.026 30.769 0.00 0.00 46.28 0.98
323 324 8.974060 TTAAGGAACGCCTGATTTATTTCTAT 57.026 30.769 0.00 0.00 46.28 1.98
324 325 7.012044 GCTTAAGGAACGCCTGATTTATTTCTA 59.988 37.037 4.29 0.00 46.28 2.10
327 328 5.417580 TGCTTAAGGAACGCCTGATTTATTT 59.582 36.000 4.29 0.00 46.28 1.40
328 329 4.947388 TGCTTAAGGAACGCCTGATTTATT 59.053 37.500 4.29 0.00 46.28 1.40
329 330 4.335594 GTGCTTAAGGAACGCCTGATTTAT 59.664 41.667 4.29 0.00 46.28 1.40
331 332 2.488153 GTGCTTAAGGAACGCCTGATTT 59.512 45.455 4.29 0.00 46.28 2.17
332 333 2.084546 GTGCTTAAGGAACGCCTGATT 58.915 47.619 4.29 0.00 46.28 2.57
333 334 1.679032 GGTGCTTAAGGAACGCCTGAT 60.679 52.381 4.29 0.00 46.28 2.90
337 338 2.396157 CCGGTGCTTAAGGAACGCC 61.396 63.158 26.91 13.84 45.41 5.68
339 340 2.159181 CACCGGTGCTTAAGGAACG 58.841 57.895 25.59 25.59 46.35 3.95
350 351 3.181501 CCATGTACAAATAAGCACCGGTG 60.182 47.826 30.66 30.66 0.00 4.94
351 352 3.013921 CCATGTACAAATAAGCACCGGT 58.986 45.455 0.00 0.00 0.00 5.28
352 353 3.013921 ACCATGTACAAATAAGCACCGG 58.986 45.455 0.00 0.00 0.00 5.28
354 355 5.006358 CGTCTACCATGTACAAATAAGCACC 59.994 44.000 0.00 0.00 0.00 5.01
355 356 5.501897 GCGTCTACCATGTACAAATAAGCAC 60.502 44.000 0.00 0.00 0.00 4.40
356 357 4.569162 GCGTCTACCATGTACAAATAAGCA 59.431 41.667 0.00 0.00 0.00 3.91
357 358 4.809426 AGCGTCTACCATGTACAAATAAGC 59.191 41.667 0.00 0.00 0.00 3.09
358 359 6.903883 AAGCGTCTACCATGTACAAATAAG 57.096 37.500 0.00 0.00 0.00 1.73
359 360 8.036575 AGTTAAGCGTCTACCATGTACAAATAA 58.963 33.333 0.00 0.00 0.00 1.40
360 361 7.549839 AGTTAAGCGTCTACCATGTACAAATA 58.450 34.615 0.00 0.00 0.00 1.40
361 362 6.403878 AGTTAAGCGTCTACCATGTACAAAT 58.596 36.000 0.00 0.00 0.00 2.32
362 363 5.786311 AGTTAAGCGTCTACCATGTACAAA 58.214 37.500 0.00 0.00 0.00 2.83
363 364 5.395682 AGTTAAGCGTCTACCATGTACAA 57.604 39.130 0.00 0.00 0.00 2.41
364 365 6.513806 TTAGTTAAGCGTCTACCATGTACA 57.486 37.500 0.00 0.00 0.00 2.90
378 379 9.223557 TTCTACAGGAGAGACGCTTAGTTAAGC 62.224 44.444 12.72 12.72 44.08 3.09
379 380 4.705337 ACAGGAGAGACGCTTAGTTAAG 57.295 45.455 0.00 0.00 36.40 1.85
381 382 5.095145 TCTACAGGAGAGACGCTTAGTTA 57.905 43.478 0.00 0.00 0.00 2.24
382 383 3.952931 TCTACAGGAGAGACGCTTAGTT 58.047 45.455 0.00 0.00 0.00 2.24
383 384 3.630892 TCTACAGGAGAGACGCTTAGT 57.369 47.619 0.00 0.00 0.00 2.24
385 386 5.531659 CCTATTTCTACAGGAGAGACGCTTA 59.468 44.000 0.00 0.00 34.93 3.09
388 389 3.551250 GCCTATTTCTACAGGAGAGACGC 60.551 52.174 0.00 0.00 34.93 5.19
389 390 3.632604 TGCCTATTTCTACAGGAGAGACG 59.367 47.826 0.00 0.00 34.93 4.18
391 392 5.458595 TGATGCCTATTTCTACAGGAGAGA 58.541 41.667 0.00 0.00 34.93 3.10
392 393 5.304101 ACTGATGCCTATTTCTACAGGAGAG 59.696 44.000 0.00 0.00 34.93 3.20
393 394 5.069648 CACTGATGCCTATTTCTACAGGAGA 59.930 44.000 0.00 0.00 33.42 3.71
394 395 5.295950 CACTGATGCCTATTTCTACAGGAG 58.704 45.833 0.00 0.00 33.42 3.69
410 411 4.855388 CCGAATTTTTCTGAAGCACTGATG 59.145 41.667 0.00 0.00 0.00 3.07
411 412 4.520492 ACCGAATTTTTCTGAAGCACTGAT 59.480 37.500 0.00 0.00 0.00 2.90
412 413 3.882888 ACCGAATTTTTCTGAAGCACTGA 59.117 39.130 0.00 0.00 0.00 3.41
413 414 4.228912 ACCGAATTTTTCTGAAGCACTG 57.771 40.909 0.00 0.00 0.00 3.66
414 415 4.918810 AACCGAATTTTTCTGAAGCACT 57.081 36.364 0.00 0.00 0.00 4.40
415 416 7.637709 AATAAACCGAATTTTTCTGAAGCAC 57.362 32.000 0.00 0.00 0.00 4.40
417 418 9.368921 CAAAAATAAACCGAATTTTTCTGAAGC 57.631 29.630 4.09 0.00 41.99 3.86
424 425 9.923786 GTGCTTACAAAAATAAACCGAATTTTT 57.076 25.926 1.70 1.70 43.72 1.94
425 426 8.552865 GGTGCTTACAAAAATAAACCGAATTTT 58.447 29.630 0.00 0.00 37.98 1.82
426 427 7.929245 AGGTGCTTACAAAAATAAACCGAATTT 59.071 29.630 0.00 0.00 0.00 1.82
427 428 7.438564 AGGTGCTTACAAAAATAAACCGAATT 58.561 30.769 0.00 0.00 0.00 2.17
429 430 6.394025 AGGTGCTTACAAAAATAAACCGAA 57.606 33.333 0.00 0.00 0.00 4.30
430 431 5.048573 GGAGGTGCTTACAAAAATAAACCGA 60.049 40.000 0.00 0.00 0.00 4.69
431 432 5.158494 GGAGGTGCTTACAAAAATAAACCG 58.842 41.667 0.00 0.00 0.00 4.44
432 433 5.011227 TGGGAGGTGCTTACAAAAATAAACC 59.989 40.000 0.00 0.00 0.00 3.27
433 434 6.091718 TGGGAGGTGCTTACAAAAATAAAC 57.908 37.500 0.00 0.00 0.00 2.01
434 435 6.926630 ATGGGAGGTGCTTACAAAAATAAA 57.073 33.333 0.00 0.00 0.00 1.40
435 436 6.268847 ACAATGGGAGGTGCTTACAAAAATAA 59.731 34.615 0.00 0.00 0.00 1.40
436 437 5.777732 ACAATGGGAGGTGCTTACAAAAATA 59.222 36.000 0.00 0.00 0.00 1.40
437 438 4.592778 ACAATGGGAGGTGCTTACAAAAAT 59.407 37.500 0.00 0.00 0.00 1.82
438 439 3.964031 ACAATGGGAGGTGCTTACAAAAA 59.036 39.130 0.00 0.00 0.00 1.94
442 443 2.640332 TGTACAATGGGAGGTGCTTACA 59.360 45.455 0.00 0.00 0.00 2.41
444 445 3.308117 CCTTGTACAATGGGAGGTGCTTA 60.308 47.826 9.13 0.00 0.00 3.09
447 448 1.271926 ACCTTGTACAATGGGAGGTGC 60.272 52.381 18.16 0.00 39.18 5.01
450 451 3.721087 AAGACCTTGTACAATGGGAGG 57.279 47.619 18.16 13.61 0.00 4.30
453 454 8.980481 AATCTTATAAGACCTTGTACAATGGG 57.020 34.615 17.35 16.79 37.98 4.00
459 460 8.966194 GCTCGTTAATCTTATAAGACCTTGTAC 58.034 37.037 17.35 10.23 37.98 2.90
466 467 6.303733 GCTCGAGCTCGTTAATCTTATAAGAC 59.696 42.308 33.33 12.25 38.04 3.01
467 468 6.017357 TGCTCGAGCTCGTTAATCTTATAAGA 60.017 38.462 35.27 17.32 42.66 2.10
468 469 6.143496 TGCTCGAGCTCGTTAATCTTATAAG 58.857 40.000 35.27 19.90 42.66 1.73
469 470 6.068473 TGCTCGAGCTCGTTAATCTTATAA 57.932 37.500 35.27 10.56 42.66 0.98
470 471 5.684550 TGCTCGAGCTCGTTAATCTTATA 57.315 39.130 35.27 11.08 42.66 0.98
471 472 4.569761 TGCTCGAGCTCGTTAATCTTAT 57.430 40.909 35.27 0.00 42.66 1.73
642 1278 1.601914 GGGTGTGTGGCGTGATTTTTC 60.602 52.381 0.00 0.00 0.00 2.29
712 1348 1.520342 CTAGCAGAGGAAGCGTGCC 60.520 63.158 0.00 0.00 37.98 5.01
793 1429 1.380650 AAGGAGGCGAGAGGGAGTC 60.381 63.158 0.00 0.00 0.00 3.36
794 1430 1.380650 GAAGGAGGCGAGAGGGAGT 60.381 63.158 0.00 0.00 0.00 3.85
796 1432 2.042843 GGAAGGAGGCGAGAGGGA 60.043 66.667 0.00 0.00 0.00 4.20
810 1475 2.283529 GGACAGCAGGAGGTCGGAA 61.284 63.158 0.00 0.00 34.87 4.30
811 1476 2.680352 GGACAGCAGGAGGTCGGA 60.680 66.667 0.00 0.00 34.87 4.55
935 1625 3.371063 GAGTGCGAGGTCGGGACA 61.371 66.667 0.89 0.00 40.23 4.02
954 1644 1.105759 GGAGTTGGATGCTGGGATGC 61.106 60.000 0.00 0.00 0.00 3.91
1173 1864 2.888863 GACTCGTCCTCCTGCAGG 59.111 66.667 27.87 27.87 45.15 4.85
1331 2022 3.060000 GGGCGTGGCAACTAACCC 61.060 66.667 0.00 0.00 35.70 4.11
1350 2041 6.187727 ACCTAACAGACAGGAAATCAGAAA 57.812 37.500 0.00 0.00 36.61 2.52
1353 2044 5.582665 GCTAACCTAACAGACAGGAAATCAG 59.417 44.000 0.00 0.00 36.61 2.90
1407 2110 1.640069 CACGATCAGCATTGCTCGG 59.360 57.895 18.98 6.68 44.78 4.63
1424 2127 4.574674 ACAATACAAAGGGAGATCAGCA 57.425 40.909 0.00 0.00 0.00 4.41
1540 2253 2.169352 TCCAAAGCACTAGAGCTGATCC 59.831 50.000 15.76 0.00 45.89 3.36
1543 2256 3.261643 TCAATCCAAAGCACTAGAGCTGA 59.738 43.478 15.76 9.08 45.89 4.26
1552 2268 8.028938 ACTAACATACAAATCAATCCAAAGCAC 58.971 33.333 0.00 0.00 0.00 4.40
1595 2311 3.558931 TCTCTCTGCAAAGAACCACAA 57.441 42.857 0.00 0.00 0.00 3.33
1608 2324 0.809241 GCGGACCTGCATTCTCTCTG 60.809 60.000 3.82 0.00 34.15 3.35
1636 2352 2.606725 CGCAAACAAAATGAAGCACCAA 59.393 40.909 0.00 0.00 0.00 3.67
1656 2372 4.675190 TCGTCTACTGGTTCTTTCTACG 57.325 45.455 0.00 0.00 0.00 3.51
1668 2384 5.067153 AGGACAGAAATCAGATCGTCTACTG 59.933 44.000 0.00 0.00 35.72 2.74
1685 2401 4.569943 GATCAGCACAGTTAAAGGACAGA 58.430 43.478 0.00 0.00 0.00 3.41
1686 2402 3.369147 CGATCAGCACAGTTAAAGGACAG 59.631 47.826 0.00 0.00 0.00 3.51
1696 2412 3.082548 ACTGTAGTACGATCAGCACAGT 58.917 45.455 12.42 8.81 41.19 3.55
1712 2428 4.682787 CTTCCAGATATGCGTGAACTGTA 58.317 43.478 0.00 0.00 0.00 2.74
1751 2467 7.095607 ACACGTTCAGCTATTAAAAGAGAACAG 60.096 37.037 0.00 0.00 34.96 3.16
1773 2489 5.839262 ACTATAACATGTCAACACACACG 57.161 39.130 0.00 0.00 34.48 4.49
1986 2710 6.767524 AGTTCTGTGAAACCAACATAAACA 57.232 33.333 0.00 0.00 32.59 2.83
2001 2725 7.132694 TGCACAAGACATATAAAGTTCTGTG 57.867 36.000 13.75 13.75 36.11 3.66
2057 2781 4.095483 CGAAAGGAAATGGTGATGAAGAGG 59.905 45.833 0.00 0.00 0.00 3.69
2180 2905 2.357637 AGTACAAAATGCAACGCACACT 59.642 40.909 0.00 0.00 43.04 3.55
2474 3199 4.197750 GCAGAGATGAATCACCAGAACAT 58.802 43.478 0.00 0.00 0.00 2.71
2507 3232 6.206498 GTTCAAGTAACCATTGACAAGTTCC 58.794 40.000 0.00 0.00 36.44 3.62
2604 3329 6.855836 TGCATTTTTCTATTGTCTCCATGAC 58.144 36.000 0.00 0.00 45.54 3.06
3012 3737 0.249911 ACTCCGTTGGAAGCTCACAC 60.250 55.000 0.00 0.00 0.00 3.82
3103 3828 0.949105 GTCACCTCATCAAACGGCGT 60.949 55.000 6.77 6.77 0.00 5.68
3199 3924 4.133820 CAACATATTTGGGCGGAGATGTA 58.866 43.478 0.00 0.00 0.00 2.29
3219 3944 6.385649 AAATTAACCGAAGCAAGAAGACAA 57.614 33.333 0.00 0.00 0.00 3.18
3222 3947 6.877611 AGAAAATTAACCGAAGCAAGAAGA 57.122 33.333 0.00 0.00 0.00 2.87
3261 3986 6.093219 CACAGAGACCAAGGACATTAAAGATG 59.907 42.308 0.00 0.00 0.00 2.90
3308 4034 4.037208 ACAAAGACTGGAACTGCTTCATTG 59.963 41.667 0.00 0.00 0.00 2.82
3384 4112 4.046286 ACATGGATAAAGAAAGCACCCA 57.954 40.909 0.00 0.00 0.00 4.51
3432 4160 3.048337 TCGTGGGGTTAAGTTGATGAC 57.952 47.619 0.00 0.00 0.00 3.06
3512 4240 4.451096 TCCATTGACAGTTCGCTTCTAAAC 59.549 41.667 0.00 0.00 0.00 2.01
3542 4270 4.745125 CACTCTCGAAACTGCAGAACTAAA 59.255 41.667 23.35 0.00 0.00 1.85
3575 4303 9.118300 AGAATCATGTGAATTCAGAAGGATAAC 57.882 33.333 17.73 15.21 0.00 1.89
3662 4390 3.771216 ACTAACTTTGTACGGAGGGAGA 58.229 45.455 0.00 0.00 0.00 3.71
3663 4391 4.460382 TGTACTAACTTTGTACGGAGGGAG 59.540 45.833 8.41 0.61 42.09 4.30
3664 4392 4.406456 TGTACTAACTTTGTACGGAGGGA 58.594 43.478 8.41 0.00 42.09 4.20
3665 4393 4.789012 TGTACTAACTTTGTACGGAGGG 57.211 45.455 8.41 0.00 42.09 4.30
3666 4394 6.218746 ACTTTGTACTAACTTTGTACGGAGG 58.781 40.000 14.43 8.06 42.09 4.30
3667 4395 7.436080 TCAACTTTGTACTAACTTTGTACGGAG 59.564 37.037 8.41 9.93 42.09 4.63
3668 4396 7.264221 TCAACTTTGTACTAACTTTGTACGGA 58.736 34.615 8.41 0.00 42.09 4.69
3669 4397 7.223387 ACTCAACTTTGTACTAACTTTGTACGG 59.777 37.037 8.41 5.01 42.09 4.02
3670 4398 8.123445 ACTCAACTTTGTACTAACTTTGTACG 57.877 34.615 8.41 0.00 42.09 3.67
3671 4399 9.090692 TGACTCAACTTTGTACTAACTTTGTAC 57.909 33.333 6.58 6.58 40.27 2.90
3672 4400 9.090692 GTGACTCAACTTTGTACTAACTTTGTA 57.909 33.333 0.00 0.00 0.00 2.41
3673 4401 7.822822 AGTGACTCAACTTTGTACTAACTTTGT 59.177 33.333 0.00 0.00 0.00 2.83
3674 4402 8.197988 AGTGACTCAACTTTGTACTAACTTTG 57.802 34.615 0.00 0.00 0.00 2.77
3675 4403 8.788325 AAGTGACTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
3681 4409 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
3682 4410 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
3683 4411 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
3684 4412 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
3685 4413 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
3686 4414 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
3687 4415 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
3688 4416 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
3689 4417 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
3690 4418 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
3691 4419 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
3692 4420 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
3693 4421 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
3694 4422 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
3695 4423 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
3696 4424 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
3697 4425 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
3698 4426 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
3699 4427 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
3700 4428 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3701 4429 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
3702 4430 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
3703 4431 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
3704 4432 3.116862 AGAATATACTCCCTCCGTCCCAA 60.117 47.826 0.00 0.00 0.00 4.12
3705 4433 2.449730 AGAATATACTCCCTCCGTCCCA 59.550 50.000 0.00 0.00 0.00 4.37
3706 4434 3.172471 AGAATATACTCCCTCCGTCCC 57.828 52.381 0.00 0.00 0.00 4.46
3707 4435 5.394333 GCATAAGAATATACTCCCTCCGTCC 60.394 48.000 0.00 0.00 0.00 4.79
3708 4436 5.652518 GCATAAGAATATACTCCCTCCGTC 58.347 45.833 0.00 0.00 0.00 4.79
3709 4437 4.158025 CGCATAAGAATATACTCCCTCCGT 59.842 45.833 0.00 0.00 0.00 4.69
3710 4438 4.673441 CGCATAAGAATATACTCCCTCCG 58.327 47.826 0.00 0.00 0.00 4.63
3711 4439 4.160626 AGCGCATAAGAATATACTCCCTCC 59.839 45.833 11.47 0.00 0.00 4.30
3712 4440 5.105752 CAGCGCATAAGAATATACTCCCTC 58.894 45.833 11.47 0.00 0.00 4.30
3713 4441 4.528596 ACAGCGCATAAGAATATACTCCCT 59.471 41.667 11.47 0.00 0.00 4.20
3714 4442 4.822026 ACAGCGCATAAGAATATACTCCC 58.178 43.478 11.47 0.00 0.00 4.30
3715 4443 7.759886 TGATTACAGCGCATAAGAATATACTCC 59.240 37.037 11.47 0.00 0.00 3.85
3716 4444 8.689251 TGATTACAGCGCATAAGAATATACTC 57.311 34.615 11.47 0.76 0.00 2.59
3717 4445 9.307121 GATGATTACAGCGCATAAGAATATACT 57.693 33.333 11.47 0.00 0.00 2.12
3718 4446 9.087424 TGATGATTACAGCGCATAAGAATATAC 57.913 33.333 11.47 0.00 34.93 1.47
3719 4447 9.305925 CTGATGATTACAGCGCATAAGAATATA 57.694 33.333 11.47 0.00 34.93 0.86
3785 4513 4.081420 GGACAGCGGACATGGATATTAGAT 60.081 45.833 0.00 0.00 0.00 1.98
3919 4650 0.317770 CACACCCGAACAATGCACAC 60.318 55.000 0.00 0.00 0.00 3.82
3932 4663 1.511768 GTAGCTCCGACTCACACCC 59.488 63.158 0.00 0.00 0.00 4.61
4016 4761 1.583054 GGATGACAGGTGTTATCCGC 58.417 55.000 15.84 0.00 46.57 5.54
4097 4842 3.357203 ACTCTTCTCATAGCACCTCGAA 58.643 45.455 0.00 0.00 0.00 3.71
4118 4880 3.967401 TCACGTTGTACATTTCTCACGA 58.033 40.909 19.26 0.00 0.00 4.35
4222 4987 1.336240 GGCATGTGAAGCAAAGACACC 60.336 52.381 0.00 0.00 34.18 4.16
4264 5029 7.344612 GGACCAGGGGATTAATAAAGATGTTTT 59.655 37.037 0.00 0.00 0.00 2.43
4270 5035 5.043762 AGTGGACCAGGGGATTAATAAAGA 58.956 41.667 0.00 0.00 0.00 2.52
4294 5059 0.107459 GTCAGGTTGGAGATGCCCTC 60.107 60.000 0.00 0.00 41.22 4.30
4309 5074 2.646175 ATGTCCACCGACGGGTCAG 61.646 63.158 20.00 4.90 46.01 3.51
4310 5075 2.602267 ATGTCCACCGACGGGTCA 60.602 61.111 20.00 11.43 46.01 4.02
4311 5076 2.125673 CATGTCCACCGACGGGTC 60.126 66.667 20.00 5.92 46.01 4.46
4313 5078 4.467084 CCCATGTCCACCGACGGG 62.467 72.222 20.00 7.12 42.37 5.28
4314 5079 3.387091 TCCCATGTCCACCGACGG 61.387 66.667 13.61 13.61 42.37 4.79
4318 5083 0.460311 GACTAGTCCCATGTCCACCG 59.540 60.000 12.13 0.00 0.00 4.94
4319 5084 1.482593 CAGACTAGTCCCATGTCCACC 59.517 57.143 19.38 0.00 0.00 4.61
4327 5092 3.765968 TCTGTGCAGACTAGTCCCA 57.234 52.632 19.38 13.73 31.41 4.37
4344 5109 2.179517 CCGACTCTCACAGCCGTC 59.820 66.667 0.00 0.00 0.00 4.79
4349 5114 1.177401 TGGATGACCGACTCTCACAG 58.823 55.000 0.00 0.00 39.42 3.66
4355 5120 2.890808 TAGCATTGGATGACCGACTC 57.109 50.000 0.00 0.00 39.42 3.36
4376 5141 2.642139 ACCGATTTGAAAGCATGCAG 57.358 45.000 21.98 0.00 0.00 4.41
4382 5147 7.457060 TGTTTGTTTAAAACCGATTTGAAAGC 58.543 30.769 0.00 0.00 30.11 3.51
4383 5148 8.113675 CCTGTTTGTTTAAAACCGATTTGAAAG 58.886 33.333 0.00 0.00 30.11 2.62
4384 5149 7.817962 TCCTGTTTGTTTAAAACCGATTTGAAA 59.182 29.630 0.00 0.00 29.44 2.69
4407 5173 5.009010 GTCCGATTTGCATGTAATTCATCCT 59.991 40.000 15.59 0.00 34.09 3.24
4514 5280 5.406780 CCTCTAGATAACATGATTTGACGGC 59.593 44.000 0.00 0.00 0.00 5.68
4536 5302 2.795329 ACATTGGAGCGATTTGAACCT 58.205 42.857 0.00 0.00 0.00 3.50
4570 5336 7.175293 AGTGATGGGTAATTAAAGCGTTAAACA 59.825 33.333 8.90 4.63 32.98 2.83
4581 5347 4.648762 CCAATGGCAGTGATGGGTAATTAA 59.351 41.667 17.68 0.00 0.00 1.40
4595 8062 4.695217 ACGTGTTTATAACCAATGGCAG 57.305 40.909 0.00 0.00 0.00 4.85
4615 8082 5.353123 TCATGGGATAGCGTTGAGTTAAAAC 59.647 40.000 0.00 0.00 0.00 2.43
4620 8087 3.627395 TTCATGGGATAGCGTTGAGTT 57.373 42.857 0.00 0.00 0.00 3.01
4697 8165 2.946329 TCTGTTGCACGTTGGTATTTGT 59.054 40.909 0.00 0.00 0.00 2.83
4708 8176 8.988064 ATTAGGTAAGATATATCTGTTGCACG 57.012 34.615 16.01 0.00 37.19 5.34
4772 8240 8.112449 GGAAACTAGTAATAATGTACGTGCAAC 58.888 37.037 11.22 3.72 0.00 4.17
4795 8263 4.384940 TGATGAACGACATGTCTTTGGAA 58.615 39.130 21.03 7.97 39.56 3.53
4798 8266 5.791367 ATCTGATGAACGACATGTCTTTG 57.209 39.130 21.03 9.72 39.56 2.77
4803 8271 2.679837 GGCAATCTGATGAACGACATGT 59.320 45.455 0.00 0.00 39.56 3.21
4804 8272 2.286008 CGGCAATCTGATGAACGACATG 60.286 50.000 4.84 0.00 39.56 3.21
4805 8273 1.935873 CGGCAATCTGATGAACGACAT 59.064 47.619 0.00 0.00 42.47 3.06
4806 8274 1.358877 CGGCAATCTGATGAACGACA 58.641 50.000 0.00 0.00 0.00 4.35
4807 8275 0.652592 CCGGCAATCTGATGAACGAC 59.347 55.000 8.92 0.00 0.00 4.34
4808 8276 0.249120 ACCGGCAATCTGATGAACGA 59.751 50.000 0.00 0.00 0.00 3.85
4809 8277 1.860950 CTACCGGCAATCTGATGAACG 59.139 52.381 0.00 0.00 0.00 3.95
4810 8278 2.866762 GTCTACCGGCAATCTGATGAAC 59.133 50.000 0.00 0.00 0.00 3.18
4811 8279 2.766263 AGTCTACCGGCAATCTGATGAA 59.234 45.455 0.00 0.00 0.00 2.57
4812 8280 2.388735 AGTCTACCGGCAATCTGATGA 58.611 47.619 0.00 0.00 0.00 2.92
4813 8281 2.898729 AGTCTACCGGCAATCTGATG 57.101 50.000 0.00 0.00 0.00 3.07
4814 8282 3.567397 ACTAGTCTACCGGCAATCTGAT 58.433 45.455 0.00 0.00 0.00 2.90
4815 8283 2.950309 GACTAGTCTACCGGCAATCTGA 59.050 50.000 15.91 0.00 0.00 3.27
4816 8284 2.952978 AGACTAGTCTACCGGCAATCTG 59.047 50.000 24.04 0.00 38.35 2.90
4817 8285 3.300239 AGACTAGTCTACCGGCAATCT 57.700 47.619 24.04 0.00 38.35 2.40
4835 8303 2.439701 CCAGAGGGCGGTCGTAGA 60.440 66.667 0.00 0.00 0.00 2.59
4836 8304 2.439701 TCCAGAGGGCGGTCGTAG 60.440 66.667 0.00 0.00 0.00 3.51
4837 8305 2.439701 CTCCAGAGGGCGGTCGTA 60.440 66.667 0.00 0.00 0.00 3.43
4838 8306 3.881019 TTCTCCAGAGGGCGGTCGT 62.881 63.158 0.00 0.00 0.00 4.34
4839 8307 3.068691 TTCTCCAGAGGGCGGTCG 61.069 66.667 0.00 0.00 0.00 4.79
4840 8308 2.579738 GTTCTCCAGAGGGCGGTC 59.420 66.667 0.00 0.00 0.00 4.79
4841 8309 3.003763 GGTTCTCCAGAGGGCGGT 61.004 66.667 0.00 0.00 0.00 5.68
4842 8310 3.003173 TGGTTCTCCAGAGGGCGG 61.003 66.667 0.00 0.00 39.03 6.13
4854 8322 3.944015 CCATCTGGAGAACAAGATGGTTC 59.056 47.826 19.73 0.00 45.87 3.62
4855 8323 3.588842 TCCATCTGGAGAACAAGATGGTT 59.411 43.478 24.20 0.00 45.33 3.67
4856 8324 3.184628 TCCATCTGGAGAACAAGATGGT 58.815 45.455 24.20 0.00 45.33 3.55
4857 8325 3.920231 TCCATCTGGAGAACAAGATGG 57.080 47.619 21.19 21.19 45.85 3.51
4858 8326 5.942236 TCTTTTCCATCTGGAGAACAAGATG 59.058 40.000 7.42 7.42 46.36 2.90
4859 8327 6.131972 TCTTTTCCATCTGGAGAACAAGAT 57.868 37.500 0.00 0.00 46.36 2.40
4860 8328 5.567037 TCTTTTCCATCTGGAGAACAAGA 57.433 39.130 0.00 4.18 46.36 3.02
4861 8329 6.208204 ACAATCTTTTCCATCTGGAGAACAAG 59.792 38.462 0.00 2.12 46.36 3.16
4862 8330 6.016024 CACAATCTTTTCCATCTGGAGAACAA 60.016 38.462 0.00 0.00 46.36 2.83
4863 8331 5.474532 CACAATCTTTTCCATCTGGAGAACA 59.525 40.000 0.00 0.00 46.36 3.18
4864 8332 5.707298 TCACAATCTTTTCCATCTGGAGAAC 59.293 40.000 0.00 0.00 46.36 3.01
4865 8333 5.707298 GTCACAATCTTTTCCATCTGGAGAA 59.293 40.000 0.00 0.65 46.36 2.87
4866 8334 5.248640 GTCACAATCTTTTCCATCTGGAGA 58.751 41.667 0.00 0.00 46.36 3.71
4867 8335 4.397417 GGTCACAATCTTTTCCATCTGGAG 59.603 45.833 0.00 0.00 46.36 3.86
4868 8336 4.202556 TGGTCACAATCTTTTCCATCTGGA 60.203 41.667 0.00 0.00 43.73 3.86
4869 8337 4.081406 TGGTCACAATCTTTTCCATCTGG 58.919 43.478 0.00 0.00 0.00 3.86
4870 8338 4.157289 CCTGGTCACAATCTTTTCCATCTG 59.843 45.833 0.00 0.00 0.00 2.90
4871 8339 4.043310 TCCTGGTCACAATCTTTTCCATCT 59.957 41.667 0.00 0.00 0.00 2.90
4872 8340 4.335416 TCCTGGTCACAATCTTTTCCATC 58.665 43.478 0.00 0.00 0.00 3.51
4873 8341 4.387026 TCCTGGTCACAATCTTTTCCAT 57.613 40.909 0.00 0.00 0.00 3.41
4874 8342 3.874383 TCCTGGTCACAATCTTTTCCA 57.126 42.857 0.00 0.00 0.00 3.53
4875 8343 5.529581 TTTTCCTGGTCACAATCTTTTCC 57.470 39.130 0.00 0.00 0.00 3.13
4876 8344 6.748132 TCATTTTCCTGGTCACAATCTTTTC 58.252 36.000 0.00 0.00 0.00 2.29
4877 8345 6.324770 ACTCATTTTCCTGGTCACAATCTTTT 59.675 34.615 0.00 0.00 0.00 2.27
4878 8346 5.835280 ACTCATTTTCCTGGTCACAATCTTT 59.165 36.000 0.00 0.00 0.00 2.52
4879 8347 5.242393 CACTCATTTTCCTGGTCACAATCTT 59.758 40.000 0.00 0.00 0.00 2.40
4880 8348 4.763793 CACTCATTTTCCTGGTCACAATCT 59.236 41.667 0.00 0.00 0.00 2.40
4881 8349 4.520492 ACACTCATTTTCCTGGTCACAATC 59.480 41.667 0.00 0.00 0.00 2.67
4882 8350 4.473444 ACACTCATTTTCCTGGTCACAAT 58.527 39.130 0.00 0.00 0.00 2.71
4883 8351 3.897239 ACACTCATTTTCCTGGTCACAA 58.103 40.909 0.00 0.00 0.00 3.33
4884 8352 3.576078 ACACTCATTTTCCTGGTCACA 57.424 42.857 0.00 0.00 0.00 3.58
4885 8353 3.882888 TCAACACTCATTTTCCTGGTCAC 59.117 43.478 0.00 0.00 0.00 3.67
4886 8354 4.136796 CTCAACACTCATTTTCCTGGTCA 58.863 43.478 0.00 0.00 0.00 4.02
4887 8355 4.756084 CTCAACACTCATTTTCCTGGTC 57.244 45.455 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.