Multiple sequence alignment - TraesCS2B01G381800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G381800 chr2B 100.000 4118 0 0 1 4118 545368678 545364561 0.000000e+00 7605.0
1 TraesCS2B01G381800 chr2B 94.545 55 2 1 4057 4111 625160178 625160231 2.640000e-12 84.2
2 TraesCS2B01G381800 chr2B 92.727 55 3 1 4057 4111 625162227 625162280 1.230000e-10 78.7
3 TraesCS2B01G381800 chr2A 89.417 1871 120 29 1985 3790 607842535 607840678 0.000000e+00 2287.0
4 TraesCS2B01G381800 chr2A 85.293 1897 166 52 1 1827 607844626 607842773 0.000000e+00 1853.0
5 TraesCS2B01G381800 chr2A 92.760 221 7 4 3783 3995 607838229 607838010 1.110000e-80 311.0
6 TraesCS2B01G381800 chr2A 91.429 70 2 4 4043 4111 348423602 348423668 4.380000e-15 93.5
7 TraesCS2B01G381800 chr2A 83.333 60 10 0 400 459 313294091 313294150 5.750000e-04 56.5
8 TraesCS2B01G381800 chr2D 89.238 1654 87 46 1978 3554 466724686 466723047 0.000000e+00 1984.0
9 TraesCS2B01G381800 chr2D 86.474 1900 147 54 1 1827 466726694 466724832 0.000000e+00 1984.0
10 TraesCS2B01G381800 chr2D 88.054 519 38 11 3558 4056 466722851 466722337 9.860000e-166 593.0
11 TraesCS2B01G381800 chr2D 94.545 55 2 1 4057 4111 328332374 328332427 2.640000e-12 84.2
12 TraesCS2B01G381800 chr2D 90.323 62 5 1 4057 4118 556344715 556344775 3.410000e-11 80.5
13 TraesCS2B01G381800 chr6D 88.961 154 12 4 2623 2772 292737751 292737599 7.030000e-43 185.0
14 TraesCS2B01G381800 chr6D 92.308 65 2 2 4054 4118 235783429 235783368 5.670000e-14 89.8
15 TraesCS2B01G381800 chr6A 88.387 155 14 3 2616 2766 428426480 428426634 2.530000e-42 183.0
16 TraesCS2B01G381800 chr6B 88.312 154 13 4 2623 2772 457216778 457216626 3.270000e-41 180.0
17 TraesCS2B01G381800 chr6B 100.000 28 0 0 348 375 103286009 103285982 7.000000e-03 52.8
18 TraesCS2B01G381800 chr5A 90.361 83 8 0 2623 2705 676887309 676887391 4.350000e-20 110.0
19 TraesCS2B01G381800 chr4D 90.361 83 8 0 2623 2705 497126484 497126566 4.350000e-20 110.0
20 TraesCS2B01G381800 chr4D 90.789 76 5 2 2621 2695 506606766 506606692 2.620000e-17 100.0
21 TraesCS2B01G381800 chr4B 90.361 83 8 0 2623 2705 637622199 637622281 4.350000e-20 110.0
22 TraesCS2B01G381800 chr7D 92.308 65 1 3 4055 4118 69476962 69476901 5.670000e-14 89.8
23 TraesCS2B01G381800 chrUn 91.935 62 2 2 4057 4118 333427358 333427300 2.640000e-12 84.2
24 TraesCS2B01G381800 chr1A 92.982 57 0 3 4057 4111 505140136 505140190 3.410000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G381800 chr2B 545364561 545368678 4117 True 7605.000000 7605 100.000000 1 4118 1 chr2B.!!$R1 4117
1 TraesCS2B01G381800 chr2A 607838010 607844626 6616 True 1483.666667 2287 89.156667 1 3995 3 chr2A.!!$R1 3994
2 TraesCS2B01G381800 chr2D 466722337 466726694 4357 True 1520.333333 1984 87.922000 1 4056 3 chr2D.!!$R1 4055

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
627 671 0.250234 TCGGAATCTCCACAGGCAAG 59.750 55.0 0.0 0.0 35.91 4.01 F
1743 1840 0.177604 GTCCTGACTCCTGAGCCATG 59.822 60.0 0.0 0.0 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1873 2055 0.036671 CCAGTACCCCCTTTGACGAC 60.037 60.0 0.0 0.0 0.00 4.34 R
3738 4306 0.109723 AAAAGCCGGTTAGAGCACCA 59.890 50.0 1.9 0.0 36.49 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.009829 GCGGGCACTGTGAATCTAAG 58.990 55.000 12.86 0.00 36.83 2.18
46 47 1.757118 TGTGAATCTAAGAGGGCCGAG 59.243 52.381 0.00 0.00 0.00 4.63
51 52 2.750141 TCTAAGAGGGCCGAGTACAT 57.250 50.000 0.00 0.00 0.00 2.29
144 157 9.566432 AATTCACTCTTTCATTCCCTATATGTC 57.434 33.333 0.00 0.00 0.00 3.06
169 183 7.230712 TCACTTTTTCCAATAAAAGACTCCTCC 59.769 37.037 13.89 0.00 44.22 4.30
173 187 5.237236 TCCAATAAAAGACTCCTCCGTTT 57.763 39.130 0.00 0.00 0.00 3.60
188 202 8.635328 ACTCCTCCGTTTGTGTAAATAAAATTT 58.365 29.630 0.00 0.00 0.00 1.82
194 208 9.250624 CCGTTTGTGTAAATAAAATTTTGAGGA 57.749 29.630 13.76 0.00 0.00 3.71
214 228 6.951778 TGAGGACCTCATGGAATTCGTATATA 59.048 38.462 20.74 0.00 35.39 0.86
215 229 7.619698 TGAGGACCTCATGGAATTCGTATATAT 59.380 37.037 20.74 0.00 35.39 0.86
241 255 2.415697 ATGTGCCTAACGTGCAAAAC 57.584 45.000 0.04 0.00 41.06 2.43
254 268 2.221981 GTGCAAAACTCACCTCTCTTCG 59.778 50.000 0.00 0.00 0.00 3.79
258 272 4.035208 GCAAAACTCACCTCTCTTCGAAAA 59.965 41.667 0.00 0.00 0.00 2.29
259 273 5.502606 CAAAACTCACCTCTCTTCGAAAAC 58.497 41.667 0.00 0.00 0.00 2.43
261 275 5.786264 AACTCACCTCTCTTCGAAAACTA 57.214 39.130 0.00 0.00 0.00 2.24
265 279 6.097915 TCACCTCTCTTCGAAAACTAATGT 57.902 37.500 0.00 0.00 0.00 2.71
269 283 5.578727 CCTCTCTTCGAAAACTAATGTGAGG 59.421 44.000 12.25 12.25 0.00 3.86
274 288 5.462530 TCGAAAACTAATGTGAGGACTCA 57.537 39.130 0.00 0.00 37.24 3.41
278 292 8.092068 TCGAAAACTAATGTGAGGACTCATTTA 58.908 33.333 5.19 6.45 42.18 1.40
344 358 8.709646 ACATAATTTTACAGTTTCGACTCACTC 58.290 33.333 0.00 0.00 0.00 3.51
350 364 2.032620 AGTTTCGACTCACTCCAGTGT 58.967 47.619 6.61 0.00 45.76 3.55
353 367 3.536956 TTCGACTCACTCCAGTGTTTT 57.463 42.857 6.61 0.00 45.76 2.43
376 390 3.353557 AGTCGTTGCTAGATGGTCTACA 58.646 45.455 0.00 0.00 0.00 2.74
382 396 6.096423 TCGTTGCTAGATGGTCTACATAACTT 59.904 38.462 0.00 0.00 40.72 2.66
410 432 8.725148 TGTGTTTTAGGTTACTTTTAACGTTCA 58.275 29.630 2.82 0.00 38.88 3.18
419 441 8.337532 GGTTACTTTTAACGTTCATTGTACTGT 58.662 33.333 2.82 0.00 38.88 3.55
425 447 7.899178 TTAACGTTCATTGTACTGTCATGAT 57.101 32.000 2.82 0.00 0.00 2.45
556 583 6.090898 AGCAACACGCAGTAACTTATCTTAAG 59.909 38.462 0.00 0.00 41.61 1.85
577 620 3.131223 AGAGAGTGAGAGAGAGAGAGACG 59.869 52.174 0.00 0.00 0.00 4.18
587 630 4.403734 AGAGAGAGAGACGGAAGAAAAGT 58.596 43.478 0.00 0.00 0.00 2.66
592 635 6.924612 AGAGAGAGACGGAAGAAAAGTAAAAC 59.075 38.462 0.00 0.00 0.00 2.43
609 652 3.653539 AAACTTACCGTGGGCATTTTC 57.346 42.857 0.00 0.00 0.00 2.29
626 670 0.690192 TTCGGAATCTCCACAGGCAA 59.310 50.000 0.00 0.00 35.91 4.52
627 671 0.250234 TCGGAATCTCCACAGGCAAG 59.750 55.000 0.00 0.00 35.91 4.01
628 672 0.745845 CGGAATCTCCACAGGCAAGG 60.746 60.000 0.00 0.00 35.91 3.61
629 673 1.034292 GGAATCTCCACAGGCAAGGC 61.034 60.000 0.00 0.00 36.28 4.35
630 674 0.322816 GAATCTCCACAGGCAAGGCA 60.323 55.000 0.00 0.00 0.00 4.75
631 675 0.323178 AATCTCCACAGGCAAGGCAG 60.323 55.000 0.00 0.00 0.00 4.85
651 695 1.285078 GGGGTAGTGGAGCTGGAATTT 59.715 52.381 0.00 0.00 0.00 1.82
781 830 3.894257 GCAAAGAAAGGTTGCCTCC 57.106 52.632 0.00 0.00 44.53 4.30
804 853 1.605710 CCTGCCTTGGATTTGATAGCG 59.394 52.381 0.00 0.00 0.00 4.26
873 922 6.910536 AGCACGTAAAAATATCTCCAAGAG 57.089 37.500 0.00 0.00 0.00 2.85
1074 1134 3.623703 GAGGAAAGGCCCGTGGACC 62.624 68.421 0.00 0.00 37.37 4.46
1098 1158 0.324285 AGGAAGACAAGCTGCTCCTG 59.676 55.000 1.00 0.37 0.00 3.86
1180 1240 5.046304 ACGGCCCGTATCTAGAGTACTAATA 60.046 44.000 7.20 0.00 38.73 0.98
1182 1242 5.296531 GGCCCGTATCTAGAGTACTAATAGC 59.703 48.000 0.00 0.00 0.00 2.97
1226 1290 5.664457 TCCTGCATGAACAGATTACTACTG 58.336 41.667 0.00 0.00 40.25 2.74
1319 1391 1.525197 CTTTTGTCGCTGCAAGTACGA 59.475 47.619 0.00 0.00 35.30 3.43
1338 1410 3.009143 ACGAGCCTCCTTTTCCAACTAAT 59.991 43.478 0.00 0.00 0.00 1.73
1408 1484 2.049475 TTGCACACGGCCGTAAACAC 62.049 55.000 33.70 18.82 43.89 3.32
1419 1495 3.429960 GGCCGTAAACACTACCTTAGGAG 60.430 52.174 4.77 0.45 0.00 3.69
1421 1497 4.019174 CCGTAAACACTACCTTAGGAGGA 58.981 47.826 4.77 0.00 46.74 3.71
1450 1526 1.007387 CCGGCAACTTGCAAGTTCC 60.007 57.895 35.97 32.84 45.65 3.62
1500 1587 2.019951 CCTGTACGGTCGTGTGTGC 61.020 63.158 6.25 0.00 0.00 4.57
1536 1626 6.796426 TGTTAGGACGAAGATGATGAACTAG 58.204 40.000 0.00 0.00 0.00 2.57
1539 1629 4.047822 GGACGAAGATGATGAACTAGCTG 58.952 47.826 0.00 0.00 0.00 4.24
1542 1632 3.728221 CGAAGATGATGAACTAGCTGACG 59.272 47.826 0.00 0.00 0.00 4.35
1543 1633 3.724508 AGATGATGAACTAGCTGACGG 57.275 47.619 0.00 0.00 0.00 4.79
1544 1634 3.291584 AGATGATGAACTAGCTGACGGA 58.708 45.455 0.00 0.00 0.00 4.69
1545 1635 3.701542 AGATGATGAACTAGCTGACGGAA 59.298 43.478 0.00 0.00 0.00 4.30
1560 1650 1.136872 CGGAAGCTCTCTTTCGCTCG 61.137 60.000 0.00 0.00 43.51 5.03
1598 1688 6.320418 TCTTGGAGAATATAGTCAGTGCGTTA 59.680 38.462 2.62 0.00 0.00 3.18
1599 1689 6.459670 TGGAGAATATAGTCAGTGCGTTAA 57.540 37.500 2.62 0.00 0.00 2.01
1602 1692 7.652105 TGGAGAATATAGTCAGTGCGTTAATTC 59.348 37.037 2.62 0.00 0.00 2.17
1603 1693 7.116519 GGAGAATATAGTCAGTGCGTTAATTCC 59.883 40.741 2.62 0.00 0.00 3.01
1604 1694 7.727181 AGAATATAGTCAGTGCGTTAATTCCT 58.273 34.615 2.62 0.00 0.00 3.36
1605 1695 7.868415 AGAATATAGTCAGTGCGTTAATTCCTC 59.132 37.037 2.62 0.00 0.00 3.71
1606 1696 3.963428 AGTCAGTGCGTTAATTCCTCT 57.037 42.857 0.00 0.00 0.00 3.69
1608 1698 5.401531 AGTCAGTGCGTTAATTCCTCTAA 57.598 39.130 0.00 0.00 0.00 2.10
1609 1699 5.411781 AGTCAGTGCGTTAATTCCTCTAAG 58.588 41.667 0.00 0.00 0.00 2.18
1610 1700 5.185249 AGTCAGTGCGTTAATTCCTCTAAGA 59.815 40.000 0.00 0.00 0.00 2.10
1612 1702 6.199342 GTCAGTGCGTTAATTCCTCTAAGATC 59.801 42.308 0.00 0.00 0.00 2.75
1614 1704 5.364157 AGTGCGTTAATTCCTCTAAGATCCT 59.636 40.000 0.00 0.00 0.00 3.24
1635 1725 8.688747 ATCCTAATCATCAATTCTTCAACTCC 57.311 34.615 0.00 0.00 0.00 3.85
1636 1726 6.763135 TCCTAATCATCAATTCTTCAACTCCG 59.237 38.462 0.00 0.00 0.00 4.63
1637 1727 6.540189 CCTAATCATCAATTCTTCAACTCCGT 59.460 38.462 0.00 0.00 0.00 4.69
1650 1740 3.254166 TCAACTCCGTACGAACTAGCTTT 59.746 43.478 18.76 0.00 0.00 3.51
1694 1784 3.748568 GCTATAGCTCTGGTTTGCATACC 59.251 47.826 18.46 18.46 37.08 2.73
1695 1785 4.503991 GCTATAGCTCTGGTTTGCATACCT 60.504 45.833 24.26 8.74 37.29 3.08
1696 1786 5.279506 GCTATAGCTCTGGTTTGCATACCTA 60.280 44.000 24.26 13.15 37.29 3.08
1697 1787 3.268023 AGCTCTGGTTTGCATACCTAC 57.732 47.619 24.26 12.39 39.04 3.18
1699 1789 3.264450 AGCTCTGGTTTGCATACCTACTT 59.736 43.478 24.26 6.52 39.04 2.24
1700 1790 3.375299 GCTCTGGTTTGCATACCTACTTG 59.625 47.826 24.26 12.37 39.04 3.16
1701 1791 3.941483 CTCTGGTTTGCATACCTACTTGG 59.059 47.826 24.26 9.65 39.04 3.61
1702 1792 3.585289 TCTGGTTTGCATACCTACTTGGA 59.415 43.478 24.26 11.39 39.04 3.53
1703 1793 4.042311 TCTGGTTTGCATACCTACTTGGAA 59.958 41.667 24.26 3.62 39.04 3.53
1713 1810 1.009829 CTACTTGGAAGATGCGTGGC 58.990 55.000 0.00 0.00 0.00 5.01
1731 1828 2.104792 TGGCTATATTGCTGGTCCTGAC 59.895 50.000 9.02 0.00 0.00 3.51
1740 1837 1.610673 TGGTCCTGACTCCTGAGCC 60.611 63.158 0.00 0.00 0.00 4.70
1742 1839 0.980231 GGTCCTGACTCCTGAGCCAT 60.980 60.000 0.00 0.00 0.00 4.40
1743 1840 0.177604 GTCCTGACTCCTGAGCCATG 59.822 60.000 0.00 0.00 0.00 3.66
1744 1841 0.979709 TCCTGACTCCTGAGCCATGG 60.980 60.000 7.63 7.63 0.00 3.66
1745 1842 1.525923 CTGACTCCTGAGCCATGGG 59.474 63.158 15.13 0.00 0.00 4.00
1758 1855 1.664873 CATGGGCGAGCTAGAGGAG 59.335 63.158 0.00 0.00 0.00 3.69
1786 1884 1.686587 CACGTCCATGGGCTACTGATA 59.313 52.381 15.80 0.00 0.00 2.15
1827 1931 3.318275 CCCATCAGCTAGTGTACGTACAT 59.682 47.826 29.58 20.02 38.63 2.29
1828 1932 4.537965 CCATCAGCTAGTGTACGTACATC 58.462 47.826 29.58 21.76 38.63 3.06
1830 1934 2.947652 TCAGCTAGTGTACGTACATCCC 59.052 50.000 29.58 17.65 38.63 3.85
1831 1935 1.945394 AGCTAGTGTACGTACATCCCG 59.055 52.381 29.58 18.72 38.63 5.14
1832 1936 1.002033 GCTAGTGTACGTACATCCCGG 60.002 57.143 29.58 18.30 38.63 5.73
1840 2022 3.151710 TACATCCCGGCCCGTCTG 61.152 66.667 0.85 0.00 0.00 3.51
1857 2039 3.490759 GTGTGCATCCACCTCGCG 61.491 66.667 0.00 0.00 41.35 5.87
1869 2051 1.745115 CCTCGCGGAATTGGCAAGA 60.745 57.895 6.13 0.00 0.00 3.02
1871 2053 1.003839 TCGCGGAATTGGCAAGACT 60.004 52.632 6.13 0.00 0.00 3.24
1873 2055 0.652592 CGCGGAATTGGCAAGACTAG 59.347 55.000 5.96 0.00 0.00 2.57
1874 2056 1.739067 GCGGAATTGGCAAGACTAGT 58.261 50.000 5.96 0.00 0.00 2.57
1875 2057 1.666189 GCGGAATTGGCAAGACTAGTC 59.334 52.381 15.41 15.41 0.00 2.59
1877 2059 2.674177 CGGAATTGGCAAGACTAGTCGT 60.674 50.000 17.07 11.52 34.09 4.34
1878 2060 2.930682 GGAATTGGCAAGACTAGTCGTC 59.069 50.000 17.07 6.34 43.17 4.20
1879 2061 3.585862 GAATTGGCAAGACTAGTCGTCA 58.414 45.455 17.07 8.98 45.32 4.35
1880 2062 3.678056 ATTGGCAAGACTAGTCGTCAA 57.322 42.857 17.07 16.88 45.32 3.18
1881 2063 3.462483 TTGGCAAGACTAGTCGTCAAA 57.538 42.857 17.07 7.38 45.32 2.69
1882 2064 3.026630 TGGCAAGACTAGTCGTCAAAG 57.973 47.619 17.07 3.60 45.32 2.77
1883 2065 2.288825 TGGCAAGACTAGTCGTCAAAGG 60.289 50.000 17.07 3.24 45.32 3.11
1886 2068 1.558233 AGACTAGTCGTCAAAGGGGG 58.442 55.000 17.07 0.00 45.32 5.40
1887 2069 1.203149 AGACTAGTCGTCAAAGGGGGT 60.203 52.381 17.07 0.00 45.32 4.95
1888 2070 2.042162 AGACTAGTCGTCAAAGGGGGTA 59.958 50.000 17.07 0.00 45.32 3.69
1889 2071 2.165234 GACTAGTCGTCAAAGGGGGTAC 59.835 54.545 7.22 0.00 42.37 3.34
1890 2072 2.225217 ACTAGTCGTCAAAGGGGGTACT 60.225 50.000 0.00 0.00 0.00 2.73
1891 2073 0.974383 AGTCGTCAAAGGGGGTACTG 59.026 55.000 0.00 0.00 0.00 2.74
1892 2074 0.036671 GTCGTCAAAGGGGGTACTGG 60.037 60.000 0.00 0.00 0.00 4.00
1893 2075 1.376812 CGTCAAAGGGGGTACTGGC 60.377 63.158 0.00 0.00 0.00 4.85
1894 2076 1.376812 GTCAAAGGGGGTACTGGCG 60.377 63.158 0.00 0.00 0.00 5.69
1895 2077 1.536907 TCAAAGGGGGTACTGGCGA 60.537 57.895 0.00 0.00 0.00 5.54
1896 2078 1.128809 TCAAAGGGGGTACTGGCGAA 61.129 55.000 0.00 0.00 0.00 4.70
1897 2079 0.676782 CAAAGGGGGTACTGGCGAAG 60.677 60.000 0.00 0.00 0.00 3.79
1898 2080 1.131928 AAAGGGGGTACTGGCGAAGT 61.132 55.000 0.00 0.00 43.40 3.01
1899 2081 1.838073 AAGGGGGTACTGGCGAAGTG 61.838 60.000 1.13 0.00 40.26 3.16
1900 2082 2.288025 GGGGGTACTGGCGAAGTGA 61.288 63.158 1.13 0.00 40.26 3.41
1901 2083 1.079336 GGGGTACTGGCGAAGTGAC 60.079 63.158 1.13 0.00 40.26 3.67
1902 2084 1.445582 GGGTACTGGCGAAGTGACG 60.446 63.158 1.13 0.00 40.26 4.35
1903 2085 1.582968 GGTACTGGCGAAGTGACGA 59.417 57.895 0.00 0.00 40.26 4.20
1904 2086 0.038892 GGTACTGGCGAAGTGACGAA 60.039 55.000 0.00 0.00 40.26 3.85
1905 2087 1.403780 GGTACTGGCGAAGTGACGAAT 60.404 52.381 0.00 0.00 40.26 3.34
1906 2088 2.159338 GGTACTGGCGAAGTGACGAATA 60.159 50.000 0.00 0.00 40.26 1.75
1907 2089 2.736144 ACTGGCGAAGTGACGAATAA 57.264 45.000 0.00 0.00 37.88 1.40
1908 2090 2.334838 ACTGGCGAAGTGACGAATAAC 58.665 47.619 0.00 0.00 37.88 1.89
1909 2091 2.288579 ACTGGCGAAGTGACGAATAACA 60.289 45.455 0.00 0.00 37.88 2.41
1910 2092 2.734606 CTGGCGAAGTGACGAATAACAA 59.265 45.455 0.00 0.00 35.09 2.83
1911 2093 2.734606 TGGCGAAGTGACGAATAACAAG 59.265 45.455 0.00 0.00 35.09 3.16
1912 2094 2.991190 GGCGAAGTGACGAATAACAAGA 59.009 45.455 0.00 0.00 35.09 3.02
1913 2095 3.060895 GGCGAAGTGACGAATAACAAGAG 59.939 47.826 0.00 0.00 35.09 2.85
1914 2096 3.918591 GCGAAGTGACGAATAACAAGAGA 59.081 43.478 0.00 0.00 35.09 3.10
1915 2097 4.563184 GCGAAGTGACGAATAACAAGAGAT 59.437 41.667 0.00 0.00 35.09 2.75
1916 2098 5.275974 GCGAAGTGACGAATAACAAGAGATC 60.276 44.000 0.00 0.00 35.09 2.75
1917 2099 5.052960 CGAAGTGACGAATAACAAGAGATCG 60.053 44.000 0.00 0.00 39.30 3.69
1918 2100 4.106197 AGTGACGAATAACAAGAGATCGC 58.894 43.478 0.00 0.00 37.03 4.58
1919 2101 3.857665 GTGACGAATAACAAGAGATCGCA 59.142 43.478 0.00 0.00 37.03 5.10
1920 2102 4.027295 GTGACGAATAACAAGAGATCGCAG 60.027 45.833 0.00 0.00 37.03 5.18
1921 2103 4.106197 GACGAATAACAAGAGATCGCAGT 58.894 43.478 0.00 0.00 37.03 4.40
1922 2104 5.163693 TGACGAATAACAAGAGATCGCAGTA 60.164 40.000 0.00 0.00 37.03 2.74
1923 2105 5.833082 ACGAATAACAAGAGATCGCAGTAT 58.167 37.500 0.00 0.00 37.03 2.12
1924 2106 6.273825 ACGAATAACAAGAGATCGCAGTATT 58.726 36.000 0.00 0.00 37.03 1.89
1925 2107 6.199154 ACGAATAACAAGAGATCGCAGTATTG 59.801 38.462 0.00 0.00 37.03 1.90
1926 2108 6.417930 CGAATAACAAGAGATCGCAGTATTGA 59.582 38.462 0.00 0.00 0.00 2.57
1927 2109 7.115520 CGAATAACAAGAGATCGCAGTATTGAT 59.884 37.037 0.00 0.00 0.00 2.57
1928 2110 9.411801 GAATAACAAGAGATCGCAGTATTGATA 57.588 33.333 0.00 0.00 0.00 2.15
1929 2111 9.764363 AATAACAAGAGATCGCAGTATTGATAA 57.236 29.630 0.00 0.00 0.00 1.75
1930 2112 7.706281 AACAAGAGATCGCAGTATTGATAAG 57.294 36.000 0.00 0.00 0.00 1.73
1931 2113 5.694006 ACAAGAGATCGCAGTATTGATAAGC 59.306 40.000 0.00 0.00 0.00 3.09
1932 2114 4.815269 AGAGATCGCAGTATTGATAAGCC 58.185 43.478 0.00 0.00 0.00 4.35
1933 2115 3.929610 GAGATCGCAGTATTGATAAGCCC 59.070 47.826 0.00 0.00 0.00 5.19
1934 2116 3.580458 AGATCGCAGTATTGATAAGCCCT 59.420 43.478 0.00 0.00 0.00 5.19
1935 2117 4.772624 AGATCGCAGTATTGATAAGCCCTA 59.227 41.667 0.00 0.00 0.00 3.53
1936 2118 4.521130 TCGCAGTATTGATAAGCCCTAG 57.479 45.455 0.00 0.00 0.00 3.02
1937 2119 3.895656 TCGCAGTATTGATAAGCCCTAGT 59.104 43.478 0.00 0.00 0.00 2.57
1938 2120 4.022242 TCGCAGTATTGATAAGCCCTAGTC 60.022 45.833 0.00 0.00 0.00 2.59
1939 2121 4.262036 CGCAGTATTGATAAGCCCTAGTCA 60.262 45.833 0.00 0.00 0.00 3.41
1940 2122 5.567623 CGCAGTATTGATAAGCCCTAGTCAT 60.568 44.000 0.00 0.00 0.00 3.06
1941 2123 6.350194 CGCAGTATTGATAAGCCCTAGTCATA 60.350 42.308 0.00 0.00 0.00 2.15
1942 2124 7.386851 GCAGTATTGATAAGCCCTAGTCATAA 58.613 38.462 0.00 0.00 0.00 1.90
1943 2125 7.878127 GCAGTATTGATAAGCCCTAGTCATAAA 59.122 37.037 0.00 0.00 0.00 1.40
1944 2126 9.778741 CAGTATTGATAAGCCCTAGTCATAAAA 57.221 33.333 0.00 0.00 0.00 1.52
1946 2128 9.220767 GTATTGATAAGCCCTAGTCATAAAAGG 57.779 37.037 0.00 0.00 0.00 3.11
1954 2136 5.024785 CCTAGTCATAAAAGGGAGTGTCC 57.975 47.826 0.00 0.00 35.23 4.02
1955 2137 4.469945 CCTAGTCATAAAAGGGAGTGTCCA 59.530 45.833 0.00 0.00 38.64 4.02
1956 2138 5.131142 CCTAGTCATAAAAGGGAGTGTCCAT 59.869 44.000 0.00 0.00 38.64 3.41
1957 2139 6.326583 CCTAGTCATAAAAGGGAGTGTCCATA 59.673 42.308 0.00 0.00 38.64 2.74
1958 2140 6.636454 AGTCATAAAAGGGAGTGTCCATAA 57.364 37.500 0.00 0.00 38.64 1.90
1959 2141 7.213178 AGTCATAAAAGGGAGTGTCCATAAT 57.787 36.000 0.00 0.00 38.64 1.28
1960 2142 7.643123 AGTCATAAAAGGGAGTGTCCATAATT 58.357 34.615 0.00 0.00 38.64 1.40
1961 2143 8.116026 AGTCATAAAAGGGAGTGTCCATAATTT 58.884 33.333 0.00 0.00 38.64 1.82
1962 2144 8.749354 GTCATAAAAGGGAGTGTCCATAATTTT 58.251 33.333 0.00 0.37 38.64 1.82
1963 2145 8.748412 TCATAAAAGGGAGTGTCCATAATTTTG 58.252 33.333 0.00 0.00 38.64 2.44
1964 2146 5.405935 AAAGGGAGTGTCCATAATTTTGC 57.594 39.130 0.00 0.00 38.64 3.68
1965 2147 4.046286 AGGGAGTGTCCATAATTTTGCA 57.954 40.909 0.00 0.00 38.64 4.08
1966 2148 4.415596 AGGGAGTGTCCATAATTTTGCAA 58.584 39.130 0.00 0.00 38.64 4.08
1967 2149 4.837860 AGGGAGTGTCCATAATTTTGCAAA 59.162 37.500 8.05 8.05 38.64 3.68
1968 2150 5.306678 AGGGAGTGTCCATAATTTTGCAAAA 59.693 36.000 25.76 25.76 38.64 2.44
1969 2151 6.013466 AGGGAGTGTCCATAATTTTGCAAAAT 60.013 34.615 27.73 27.73 38.64 1.82
1970 2152 6.313658 GGGAGTGTCCATAATTTTGCAAAATC 59.686 38.462 31.78 20.51 38.64 2.17
1971 2153 7.099120 GGAGTGTCCATAATTTTGCAAAATCT 58.901 34.615 31.78 22.62 35.63 2.40
1972 2154 7.063780 GGAGTGTCCATAATTTTGCAAAATCTG 59.936 37.037 31.78 28.30 35.63 2.90
1973 2155 7.669427 AGTGTCCATAATTTTGCAAAATCTGA 58.331 30.769 31.78 22.60 37.62 3.27
1976 2158 7.930325 TGTCCATAATTTTGCAAAATCTGAACA 59.070 29.630 31.78 27.00 37.62 3.18
2028 2296 6.574350 AGTATCTTGTCAGTTGGCTATGTAC 58.426 40.000 0.00 0.00 0.00 2.90
2031 2299 4.041075 TCTTGTCAGTTGGCTATGTACCAA 59.959 41.667 0.00 0.00 44.86 3.67
2041 2309 5.765510 TGGCTATGTACCAAATGGAAAGAT 58.234 37.500 6.42 1.01 38.94 2.40
2051 2320 6.458210 ACCAAATGGAAAGATTTAGCACTTG 58.542 36.000 6.42 0.00 38.94 3.16
2115 2394 1.220529 ATGCCGACATCAACTATGCG 58.779 50.000 0.00 0.00 39.39 4.73
2167 2446 2.465813 TGCATTGGGGTTAATCCAAGG 58.534 47.619 7.18 12.82 46.05 3.61
2207 2492 0.031515 TATCTTTCTCCCCGGGCTCA 60.032 55.000 17.73 0.00 0.00 4.26
2232 2521 3.505480 TTTGGGTAAAGCCGTAAAGGA 57.495 42.857 0.00 0.00 45.00 3.36
2233 2522 2.773993 TGGGTAAAGCCGTAAAGGAG 57.226 50.000 0.00 0.00 45.00 3.69
2238 2527 4.067192 GGTAAAGCCGTAAAGGAGTGAAA 58.933 43.478 0.00 0.00 45.00 2.69
2273 2562 6.549433 AAATGAGGCAAATGACACCAATAT 57.451 33.333 0.00 0.00 0.00 1.28
2274 2563 4.987408 TGAGGCAAATGACACCAATATG 57.013 40.909 0.00 0.00 0.00 1.78
2275 2564 4.598022 TGAGGCAAATGACACCAATATGA 58.402 39.130 0.00 0.00 0.00 2.15
2276 2565 4.398988 TGAGGCAAATGACACCAATATGAC 59.601 41.667 0.00 0.00 0.00 3.06
2277 2566 4.603131 AGGCAAATGACACCAATATGACT 58.397 39.130 0.00 0.00 0.00 3.41
2278 2567 5.754782 AGGCAAATGACACCAATATGACTA 58.245 37.500 0.00 0.00 0.00 2.59
2279 2568 6.367983 AGGCAAATGACACCAATATGACTAT 58.632 36.000 0.00 0.00 0.00 2.12
2280 2569 7.517320 AGGCAAATGACACCAATATGACTATA 58.483 34.615 0.00 0.00 0.00 1.31
2281 2570 7.663081 AGGCAAATGACACCAATATGACTATAG 59.337 37.037 0.00 0.00 0.00 1.31
2328 2647 1.335132 CCACCCCTGCGTGGTAGTAT 61.335 60.000 0.00 0.00 46.97 2.12
2329 2648 1.405872 CACCCCTGCGTGGTAGTATA 58.594 55.000 0.00 0.00 33.84 1.47
2330 2649 1.340248 CACCCCTGCGTGGTAGTATAG 59.660 57.143 0.00 0.00 33.84 1.31
2363 2682 6.489675 CACATGTGGTAATCTAATCACTTGC 58.510 40.000 18.51 0.00 38.21 4.01
2368 2687 3.181458 GGTAATCTAATCACTTGCCCCGA 60.181 47.826 0.00 0.00 0.00 5.14
2374 2693 4.047125 CACTTGCCCCGACCCCAT 62.047 66.667 0.00 0.00 0.00 4.00
2375 2694 3.264845 ACTTGCCCCGACCCCATT 61.265 61.111 0.00 0.00 0.00 3.16
2377 2696 2.036572 TTGCCCCGACCCCATTTC 59.963 61.111 0.00 0.00 0.00 2.17
2378 2697 2.499303 CTTGCCCCGACCCCATTTCT 62.499 60.000 0.00 0.00 0.00 2.52
2379 2698 2.087857 TTGCCCCGACCCCATTTCTT 62.088 55.000 0.00 0.00 0.00 2.52
2380 2699 1.208844 TGCCCCGACCCCATTTCTTA 61.209 55.000 0.00 0.00 0.00 2.10
2383 2702 2.158579 GCCCCGACCCCATTTCTTATTA 60.159 50.000 0.00 0.00 0.00 0.98
2394 2718 8.825774 ACCCCATTTCTTATTAATTTGAGCTTT 58.174 29.630 0.00 0.00 0.00 3.51
2396 2721 9.657419 CCCATTTCTTATTAATTTGAGCTTTGT 57.343 29.630 0.00 0.00 0.00 2.83
2463 2788 3.195182 GGGTTAACTACCTCAGACCTGAC 59.805 52.174 5.42 0.00 46.86 3.51
2551 2876 6.183360 GGGAAACAGGTAAAATATACACTGGC 60.183 42.308 0.00 0.00 0.00 4.85
2555 2880 6.113411 ACAGGTAAAATATACACTGGCACTC 58.887 40.000 0.00 0.00 0.00 3.51
2583 2908 5.873712 ACTGATCAGCTGAAACAATAGACTG 59.126 40.000 22.50 11.91 0.00 3.51
2587 2912 5.620206 TCAGCTGAAACAATAGACTGGAAA 58.380 37.500 15.67 0.00 0.00 3.13
2588 2913 5.470098 TCAGCTGAAACAATAGACTGGAAAC 59.530 40.000 15.67 0.00 0.00 2.78
2592 2917 6.623767 GCTGAAACAATAGACTGGAAACATCC 60.624 42.308 0.00 0.00 41.51 3.51
2605 2930 6.024552 TGGAAACATCCAGCTAAAATTCAC 57.975 37.500 0.00 0.00 34.33 3.18
2607 2932 6.071952 TGGAAACATCCAGCTAAAATTCACTC 60.072 38.462 0.00 0.00 34.33 3.51
3204 3560 1.676529 CCTTCTGATAGCGAACGGAGA 59.323 52.381 0.00 0.00 0.00 3.71
3207 3563 2.214347 TCTGATAGCGAACGGAGAGAG 58.786 52.381 0.00 0.00 0.00 3.20
3221 3577 2.294074 GAGAGAGGCGAGAGTACATGT 58.706 52.381 2.69 2.69 0.00 3.21
3246 3602 4.517832 GCTGAAGTGATGGATAATGATGCA 59.482 41.667 0.00 0.00 37.85 3.96
3323 3685 2.627515 AGCTCTGTTGCACTTTCTCA 57.372 45.000 0.00 0.00 34.99 3.27
3335 3697 3.555966 CACTTTCTCAAGGGGAAACTGT 58.444 45.455 0.00 0.00 33.82 3.55
3417 3785 3.243737 GGGACAAGGGTGTGTTGAAATTC 60.244 47.826 0.00 0.00 38.41 2.17
3542 3910 7.279750 TGGTCTGTTTAACCACCTATTTTTC 57.720 36.000 12.62 0.00 41.84 2.29
3545 3913 7.865889 GGTCTGTTTAACCACCTATTTTTCAAG 59.134 37.037 6.18 0.00 36.75 3.02
3551 3919 8.698973 TTAACCACCTATTTTTCAAGACATGA 57.301 30.769 0.00 0.00 35.85 3.07
3559 3934 4.916983 TTTTCAAGACATGACACCCTTG 57.083 40.909 0.00 5.14 37.92 3.61
3561 4121 1.073763 TCAAGACATGACACCCTTGGG 59.926 52.381 0.00 3.77 37.27 4.12
3579 4139 7.489239 CCTTGGGGGTTTATTTTCATAGAAA 57.511 36.000 0.00 0.00 0.00 2.52
3627 4187 1.566018 GGAACTCGAACGCTTGGTGG 61.566 60.000 0.00 0.00 0.00 4.61
3631 4191 0.041312 CTCGAACGCTTGGTGGTTTG 60.041 55.000 0.00 0.00 0.00 2.93
3669 4237 3.199071 AGAAACACTGTGAGTACCCAACA 59.801 43.478 15.86 0.00 0.00 3.33
3672 4240 3.302161 ACACTGTGAGTACCCAACACTA 58.698 45.455 15.86 0.00 35.83 2.74
3695 4263 0.607217 TCAGGACTCGAACGCTGGTA 60.607 55.000 0.00 0.00 0.00 3.25
3725 4293 3.465403 ACTCGCCCAGCTAGCCAG 61.465 66.667 12.13 4.25 0.00 4.85
3735 4303 1.069765 GCTAGCCAGCCAAGCGATA 59.930 57.895 2.29 0.00 42.37 2.92
3738 4306 0.830648 TAGCCAGCCAAGCGATACTT 59.169 50.000 0.00 0.00 40.05 2.24
3766 4334 5.118664 GCTCTAACCGGCTTTTTCATTTTTC 59.881 40.000 0.00 0.00 0.00 2.29
3767 4335 6.399639 TCTAACCGGCTTTTTCATTTTTCT 57.600 33.333 0.00 0.00 0.00 2.52
3768 4336 7.513371 TCTAACCGGCTTTTTCATTTTTCTA 57.487 32.000 0.00 0.00 0.00 2.10
3775 4343 8.026607 CCGGCTTTTTCATTTTTCTATACTTCA 58.973 33.333 0.00 0.00 0.00 3.02
3818 6842 6.384305 ACCAGACTATGAAGTAGGTTTAGCAT 59.616 38.462 0.00 0.00 39.82 3.79
3819 6843 7.092846 ACCAGACTATGAAGTAGGTTTAGCATT 60.093 37.037 0.00 0.00 39.82 3.56
3836 6868 9.190858 GTTTAGCATTACACAATTCAACAATCA 57.809 29.630 0.00 0.00 0.00 2.57
3910 6946 2.028420 TCACATGGCTGAAAGATCCG 57.972 50.000 0.00 0.00 34.07 4.18
3919 6955 0.811219 TGAAAGATCCGGCATCAGCG 60.811 55.000 13.95 0.00 43.41 5.18
3997 7033 5.810080 AGGCCTCATACCTTGTCTAATAC 57.190 43.478 0.00 0.00 31.87 1.89
4008 7044 7.540474 ACCTTGTCTAATACCGTGATATGAT 57.460 36.000 0.00 0.00 0.00 2.45
4019 7055 4.039730 ACCGTGATATGATGAAGAGGAAGG 59.960 45.833 0.00 0.00 0.00 3.46
4020 7056 4.281941 CCGTGATATGATGAAGAGGAAGGA 59.718 45.833 0.00 0.00 0.00 3.36
4021 7057 5.046735 CCGTGATATGATGAAGAGGAAGGAT 60.047 44.000 0.00 0.00 0.00 3.24
4030 7066 3.453717 TGAAGAGGAAGGATGAGGACATG 59.546 47.826 0.00 0.00 36.82 3.21
4041 7077 0.179124 GAGGACATGAGACGCTGACC 60.179 60.000 0.00 0.00 0.00 4.02
4057 7093 2.973899 CCGGTGAGGTGAGGTCTG 59.026 66.667 0.00 0.00 34.51 3.51
4058 7094 1.908793 CCGGTGAGGTGAGGTCTGT 60.909 63.158 0.00 0.00 34.51 3.41
4059 7095 1.472662 CCGGTGAGGTGAGGTCTGTT 61.473 60.000 0.00 0.00 34.51 3.16
4060 7096 1.254026 CGGTGAGGTGAGGTCTGTTA 58.746 55.000 0.00 0.00 0.00 2.41
4061 7097 1.202582 CGGTGAGGTGAGGTCTGTTAG 59.797 57.143 0.00 0.00 0.00 2.34
4062 7098 2.526432 GGTGAGGTGAGGTCTGTTAGA 58.474 52.381 0.00 0.00 0.00 2.10
4063 7099 2.897969 GGTGAGGTGAGGTCTGTTAGAA 59.102 50.000 0.00 0.00 0.00 2.10
4064 7100 3.515901 GGTGAGGTGAGGTCTGTTAGAAT 59.484 47.826 0.00 0.00 0.00 2.40
4065 7101 4.710375 GGTGAGGTGAGGTCTGTTAGAATA 59.290 45.833 0.00 0.00 0.00 1.75
4066 7102 5.187186 GGTGAGGTGAGGTCTGTTAGAATAA 59.813 44.000 0.00 0.00 0.00 1.40
4067 7103 6.295688 GGTGAGGTGAGGTCTGTTAGAATAAA 60.296 42.308 0.00 0.00 0.00 1.40
4068 7104 7.331791 GTGAGGTGAGGTCTGTTAGAATAAAT 58.668 38.462 0.00 0.00 0.00 1.40
4069 7105 7.492994 GTGAGGTGAGGTCTGTTAGAATAAATC 59.507 40.741 0.00 0.00 0.00 2.17
4070 7106 6.890293 AGGTGAGGTCTGTTAGAATAAATCC 58.110 40.000 0.00 0.00 0.00 3.01
4071 7107 5.753921 GGTGAGGTCTGTTAGAATAAATCCG 59.246 44.000 0.00 0.00 0.00 4.18
4072 7108 6.406624 GGTGAGGTCTGTTAGAATAAATCCGA 60.407 42.308 0.00 0.00 0.00 4.55
4073 7109 6.697892 GTGAGGTCTGTTAGAATAAATCCGAG 59.302 42.308 0.00 0.00 0.00 4.63
4074 7110 6.163135 AGGTCTGTTAGAATAAATCCGAGG 57.837 41.667 0.00 0.00 0.00 4.63
4075 7111 4.750598 GGTCTGTTAGAATAAATCCGAGGC 59.249 45.833 0.00 0.00 0.00 4.70
4076 7112 4.750598 GTCTGTTAGAATAAATCCGAGGCC 59.249 45.833 0.00 0.00 0.00 5.19
4077 7113 4.407621 TCTGTTAGAATAAATCCGAGGCCA 59.592 41.667 5.01 0.00 0.00 5.36
4078 7114 5.071788 TCTGTTAGAATAAATCCGAGGCCAT 59.928 40.000 5.01 0.00 0.00 4.40
4079 7115 5.305585 TGTTAGAATAAATCCGAGGCCATC 58.694 41.667 5.01 0.00 0.00 3.51
4089 7125 3.114558 GAGGCCATCGTCGATCATC 57.885 57.895 5.01 0.00 0.00 2.92
4090 7126 0.389166 GAGGCCATCGTCGATCATCC 60.389 60.000 5.01 6.78 0.00 3.51
4091 7127 1.734477 GGCCATCGTCGATCATCCG 60.734 63.158 4.34 0.00 0.00 4.18
4092 7128 1.285950 GCCATCGTCGATCATCCGA 59.714 57.895 4.34 0.00 36.06 4.55
4093 7129 0.730834 GCCATCGTCGATCATCCGAG 60.731 60.000 4.34 0.00 39.43 4.63
4094 7130 0.109551 CCATCGTCGATCATCCGAGG 60.110 60.000 4.34 0.00 43.32 4.63
4095 7131 4.870190 TCGTCGATCATCCGAGGA 57.130 55.556 0.00 0.00 46.68 3.71
4096 7132 3.324207 TCGTCGATCATCCGAGGAT 57.676 52.632 0.00 0.00 44.89 3.24
4097 7133 1.157585 TCGTCGATCATCCGAGGATC 58.842 55.000 12.16 12.16 44.89 3.36
4098 7134 0.875059 CGTCGATCATCCGAGGATCA 59.125 55.000 20.01 7.27 44.30 2.92
4099 7135 1.266989 CGTCGATCATCCGAGGATCAA 59.733 52.381 20.01 1.90 44.30 2.57
4100 7136 2.287608 CGTCGATCATCCGAGGATCAAA 60.288 50.000 20.01 7.27 44.30 2.69
4101 7137 3.053455 GTCGATCATCCGAGGATCAAAC 58.947 50.000 20.01 14.07 40.93 2.93
4102 7138 2.693074 TCGATCATCCGAGGATCAAACA 59.307 45.455 20.01 1.56 40.93 2.83
4103 7139 3.132111 TCGATCATCCGAGGATCAAACAA 59.868 43.478 20.01 0.94 40.93 2.83
4104 7140 4.060900 CGATCATCCGAGGATCAAACAAT 58.939 43.478 20.01 0.00 40.93 2.71
4105 7141 4.151335 CGATCATCCGAGGATCAAACAATC 59.849 45.833 20.01 0.00 40.93 2.67
4106 7142 4.486125 TCATCCGAGGATCAAACAATCA 57.514 40.909 0.85 0.00 31.62 2.57
4107 7143 5.039920 TCATCCGAGGATCAAACAATCAT 57.960 39.130 0.85 0.00 31.62 2.45
4108 7144 5.059161 TCATCCGAGGATCAAACAATCATC 58.941 41.667 0.85 0.00 34.06 2.92
4109 7145 4.486125 TCCGAGGATCAAACAATCATCA 57.514 40.909 0.00 0.00 36.50 3.07
4110 7146 4.191544 TCCGAGGATCAAACAATCATCAC 58.808 43.478 0.00 0.00 36.50 3.06
4111 7147 3.940852 CCGAGGATCAAACAATCATCACA 59.059 43.478 0.00 0.00 36.50 3.58
4112 7148 4.201851 CCGAGGATCAAACAATCATCACAC 60.202 45.833 0.00 0.00 36.50 3.82
4113 7149 4.493057 CGAGGATCAAACAATCATCACACG 60.493 45.833 0.00 0.00 36.50 4.49
4114 7150 4.578871 AGGATCAAACAATCATCACACGA 58.421 39.130 0.00 0.00 0.00 4.35
4115 7151 4.633126 AGGATCAAACAATCATCACACGAG 59.367 41.667 0.00 0.00 0.00 4.18
4116 7152 3.811722 TCAAACAATCATCACACGAGC 57.188 42.857 0.00 0.00 0.00 5.03
4117 7153 3.137533 TCAAACAATCATCACACGAGCA 58.862 40.909 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.124736 GCCCGCTTCAGCCACATA 60.125 61.111 0.00 0.00 37.91 2.29
12 13 3.730761 CACAGTGCCCGCTTCAGC 61.731 66.667 0.00 0.00 37.78 4.26
64 65 8.922237 TGCATGGCATCCTAGAATTATTAAAAA 58.078 29.630 0.00 0.00 31.71 1.94
65 66 8.476064 TGCATGGCATCCTAGAATTATTAAAA 57.524 30.769 0.00 0.00 31.71 1.52
66 67 7.725397 ACTGCATGGCATCCTAGAATTATTAAA 59.275 33.333 0.00 0.00 38.13 1.52
67 68 7.233632 ACTGCATGGCATCCTAGAATTATTAA 58.766 34.615 0.00 0.00 38.13 1.40
68 69 6.782986 ACTGCATGGCATCCTAGAATTATTA 58.217 36.000 0.00 0.00 38.13 0.98
71 74 4.712051 ACTGCATGGCATCCTAGAATTA 57.288 40.909 0.00 0.00 38.13 1.40
82 85 2.492881 CAAGACCATAAACTGCATGGCA 59.507 45.455 3.12 0.00 45.85 4.92
144 157 7.371159 GGAGGAGTCTTTTATTGGAAAAAGTG 58.629 38.462 8.46 0.00 43.72 3.16
163 177 9.471084 AAAATTTTATTTACACAAACGGAGGAG 57.529 29.630 0.37 0.00 0.00 3.69
173 187 9.137459 TGAGGTCCTCAAAATTTTATTTACACA 57.863 29.630 19.75 3.03 37.57 3.72
188 202 2.571653 ACGAATTCCATGAGGTCCTCAA 59.428 45.455 25.37 9.56 44.04 3.02
214 228 5.304778 TGCACGTTAGGCACATTATATCAT 58.695 37.500 0.00 0.00 36.11 2.45
215 229 4.698575 TGCACGTTAGGCACATTATATCA 58.301 39.130 0.00 0.00 36.11 2.15
219 233 4.217550 AGTTTTGCACGTTAGGCACATTAT 59.782 37.500 0.00 0.00 41.75 1.28
223 237 1.332375 GAGTTTTGCACGTTAGGCACA 59.668 47.619 0.00 0.00 41.75 4.57
225 239 1.332375 GTGAGTTTTGCACGTTAGGCA 59.668 47.619 0.00 0.00 40.00 4.75
228 242 3.131396 AGAGGTGAGTTTTGCACGTTAG 58.869 45.455 0.00 0.00 37.13 2.34
234 248 2.102420 TCGAAGAGAGGTGAGTTTTGCA 59.898 45.455 0.00 0.00 0.00 4.08
241 255 6.090088 CACATTAGTTTTCGAAGAGAGGTGAG 59.910 42.308 0.00 0.00 38.43 3.51
258 272 8.319057 TGGTATAAATGAGTCCTCACATTAGT 57.681 34.615 0.00 0.00 43.11 2.24
259 273 9.613428 TTTGGTATAAATGAGTCCTCACATTAG 57.387 33.333 0.00 0.00 43.11 1.73
261 275 7.888021 TGTTTGGTATAAATGAGTCCTCACATT 59.112 33.333 0.00 1.35 43.11 2.71
265 279 8.739039 CAAATGTTTGGTATAAATGAGTCCTCA 58.261 33.333 0.00 0.00 37.99 3.86
269 283 8.243426 TCTGCAAATGTTTGGTATAAATGAGTC 58.757 33.333 7.51 0.00 38.57 3.36
278 292 8.584157 TGTTAGAATTCTGCAAATGTTTGGTAT 58.416 29.630 18.47 0.00 38.57 2.73
281 295 7.712264 TTGTTAGAATTCTGCAAATGTTTGG 57.288 32.000 18.47 0.00 38.57 3.28
344 358 3.963383 AGCAACGACTAAAAACACTGG 57.037 42.857 0.00 0.00 0.00 4.00
350 364 5.790593 AGACCATCTAGCAACGACTAAAAA 58.209 37.500 0.00 0.00 0.00 1.94
353 367 4.945543 TGTAGACCATCTAGCAACGACTAA 59.054 41.667 0.00 0.00 28.01 2.24
393 415 8.337532 ACAGTACAATGAACGTTAAAAGTAACC 58.662 33.333 0.00 0.00 36.96 2.85
401 423 7.899178 ATCATGACAGTACAATGAACGTTAA 57.101 32.000 0.00 0.00 0.00 2.01
403 425 7.097192 ACTATCATGACAGTACAATGAACGTT 58.903 34.615 4.42 0.00 0.00 3.99
405 427 7.275560 TCAACTATCATGACAGTACAATGAACG 59.724 37.037 7.15 0.00 0.00 3.95
456 483 6.376299 GGAGGAATCCACCGTAGTTTTAATTT 59.624 38.462 0.61 0.00 34.73 1.82
459 486 4.835678 GGAGGAATCCACCGTAGTTTTAA 58.164 43.478 0.61 0.00 34.73 1.52
460 487 4.476628 GGAGGAATCCACCGTAGTTTTA 57.523 45.455 0.61 0.00 34.73 1.52
535 562 7.094291 ACTCTCTTAAGATAAGTTACTGCGTGT 60.094 37.037 5.44 0.00 0.00 4.49
556 583 3.448686 CGTCTCTCTCTCTCTCACTCTC 58.551 54.545 0.00 0.00 0.00 3.20
577 620 6.432936 CCACGGTAAGTTTTACTTTTCTTCC 58.567 40.000 0.00 0.00 39.51 3.46
587 630 4.320348 CGAAAATGCCCACGGTAAGTTTTA 60.320 41.667 0.00 0.00 0.00 1.52
592 635 0.450184 CCGAAAATGCCCACGGTAAG 59.550 55.000 0.00 0.00 40.42 2.34
609 652 0.745845 CCTTGCCTGTGGAGATTCCG 60.746 60.000 0.00 0.00 40.17 4.30
626 670 2.689034 GCTCCACTACCCCTGCCT 60.689 66.667 0.00 0.00 0.00 4.75
627 671 2.689034 AGCTCCACTACCCCTGCC 60.689 66.667 0.00 0.00 0.00 4.85
628 672 2.586792 CAGCTCCACTACCCCTGC 59.413 66.667 0.00 0.00 0.00 4.85
629 673 0.909610 TTCCAGCTCCACTACCCCTG 60.910 60.000 0.00 0.00 0.00 4.45
630 674 0.044855 ATTCCAGCTCCACTACCCCT 59.955 55.000 0.00 0.00 0.00 4.79
631 675 0.919710 AATTCCAGCTCCACTACCCC 59.080 55.000 0.00 0.00 0.00 4.95
651 695 1.527433 CTCTGCGTCACTGTCAGGGA 61.527 60.000 0.00 0.00 30.05 4.20
781 830 0.031817 ATCAAATCCAAGGCAGGGGG 60.032 55.000 0.00 0.00 0.00 5.40
824 873 2.915349 CTGGTAGGACAGAGCGTACTA 58.085 52.381 0.00 0.00 40.33 1.82
826 875 0.100861 GCTGGTAGGACAGAGCGTAC 59.899 60.000 0.00 0.00 40.97 3.67
855 904 7.042389 CCGCTCTTCTCTTGGAGATATTTTTAC 60.042 40.741 0.00 0.00 38.56 2.01
1074 1134 1.239968 GCAGCTTGTCTTCCTGGGTG 61.240 60.000 0.00 0.00 0.00 4.61
1083 1143 1.676384 GTCCAGGAGCAGCTTGTCT 59.324 57.895 0.00 0.00 0.00 3.41
1098 1158 4.408821 TGCTGGGCGACATGGTCC 62.409 66.667 0.00 0.00 0.00 4.46
1180 1240 4.024670 ACCTCGAGTTAATTAGGAGTGCT 58.975 43.478 12.31 0.00 33.16 4.40
1182 1242 5.127356 AGGAACCTCGAGTTAATTAGGAGTG 59.873 44.000 12.31 0.00 39.40 3.51
1226 1290 6.174049 AGAGCAGGACAAGAAAAATAGTACC 58.826 40.000 0.00 0.00 0.00 3.34
1319 1391 3.622455 CGGATTAGTTGGAAAAGGAGGCT 60.622 47.826 0.00 0.00 0.00 4.58
1338 1410 2.867855 AAGTTGCAGACGAGCCGGA 61.868 57.895 5.05 0.00 0.00 5.14
1365 1441 1.971481 CAGGCCGGATCAATCATTCA 58.029 50.000 5.05 0.00 0.00 2.57
1408 1484 6.265876 GGTACTTGAAGATCCTCCTAAGGTAG 59.734 46.154 0.00 0.00 43.82 3.18
1419 1495 2.007608 GTTGCCGGTACTTGAAGATCC 58.992 52.381 1.90 0.00 0.00 3.36
1420 1496 2.973945 AGTTGCCGGTACTTGAAGATC 58.026 47.619 1.90 0.00 0.00 2.75
1421 1497 3.418684 AAGTTGCCGGTACTTGAAGAT 57.581 42.857 19.19 0.00 34.68 2.40
1536 1626 1.355005 GAAAGAGAGCTTCCGTCAGC 58.645 55.000 0.00 0.00 40.44 4.26
1539 1629 0.109039 AGCGAAAGAGAGCTTCCGTC 60.109 55.000 0.00 0.00 41.52 4.79
1542 1632 1.417577 GCGAGCGAAAGAGAGCTTCC 61.418 60.000 0.00 0.00 44.69 3.46
1543 1633 1.738144 CGCGAGCGAAAGAGAGCTTC 61.738 60.000 12.58 0.00 44.69 3.86
1544 1634 1.803519 CGCGAGCGAAAGAGAGCTT 60.804 57.895 12.58 0.00 44.69 3.74
1560 1650 3.836949 TCTCCAAGAAATTTCAATGCGC 58.163 40.909 19.99 0.00 0.00 6.09
1608 1698 9.558396 GAGTTGAAGAATTGATGATTAGGATCT 57.442 33.333 0.00 0.00 33.28 2.75
1609 1699 8.782144 GGAGTTGAAGAATTGATGATTAGGATC 58.218 37.037 0.00 0.00 0.00 3.36
1610 1700 7.443575 CGGAGTTGAAGAATTGATGATTAGGAT 59.556 37.037 0.00 0.00 0.00 3.24
1612 1702 6.540189 ACGGAGTTGAAGAATTGATGATTAGG 59.460 38.462 0.00 0.00 37.78 2.69
1614 1704 7.222031 CGTACGGAGTTGAAGAATTGATGATTA 59.778 37.037 7.57 0.00 37.78 1.75
1635 1725 2.578495 ACGTGAAAGCTAGTTCGTACG 58.422 47.619 9.53 9.53 34.71 3.67
1636 1726 5.149977 ACTTACGTGAAAGCTAGTTCGTAC 58.850 41.667 0.00 0.00 34.42 3.67
1637 1727 5.362556 ACTTACGTGAAAGCTAGTTCGTA 57.637 39.130 0.00 9.07 33.70 3.43
1650 1740 5.826737 AGCTAATAGGCTTCTACTTACGTGA 59.173 40.000 0.00 0.00 39.86 4.35
1676 1766 4.030913 AGTAGGTATGCAAACCAGAGCTA 58.969 43.478 0.00 0.00 41.32 3.32
1677 1767 2.840651 AGTAGGTATGCAAACCAGAGCT 59.159 45.455 0.00 0.00 44.79 4.09
1684 1774 5.449177 GCATCTTCCAAGTAGGTATGCAAAC 60.449 44.000 0.00 0.00 42.88 2.93
1688 1778 2.802816 CGCATCTTCCAAGTAGGTATGC 59.197 50.000 0.00 0.00 41.45 3.14
1694 1784 1.009829 GCCACGCATCTTCCAAGTAG 58.990 55.000 0.00 0.00 0.00 2.57
1695 1785 0.613260 AGCCACGCATCTTCCAAGTA 59.387 50.000 0.00 0.00 0.00 2.24
1696 1786 0.613260 TAGCCACGCATCTTCCAAGT 59.387 50.000 0.00 0.00 0.00 3.16
1697 1787 1.959042 ATAGCCACGCATCTTCCAAG 58.041 50.000 0.00 0.00 0.00 3.61
1699 1789 3.402110 CAATATAGCCACGCATCTTCCA 58.598 45.455 0.00 0.00 0.00 3.53
1700 1790 2.160417 GCAATATAGCCACGCATCTTCC 59.840 50.000 0.00 0.00 0.00 3.46
1701 1791 3.070018 AGCAATATAGCCACGCATCTTC 58.930 45.455 0.00 0.00 34.23 2.87
1702 1792 2.810274 CAGCAATATAGCCACGCATCTT 59.190 45.455 0.00 0.00 34.23 2.40
1703 1793 2.420642 CAGCAATATAGCCACGCATCT 58.579 47.619 0.00 0.00 34.23 2.90
1713 1810 3.900601 AGGAGTCAGGACCAGCAATATAG 59.099 47.826 0.00 0.00 0.00 1.31
1740 1837 1.664873 CTCCTCTAGCTCGCCCATG 59.335 63.158 0.00 0.00 0.00 3.66
1742 1839 2.123683 CCTCCTCTAGCTCGCCCA 60.124 66.667 0.00 0.00 0.00 5.36
1743 1840 2.123640 ACCTCCTCTAGCTCGCCC 60.124 66.667 0.00 0.00 0.00 6.13
1744 1841 2.197605 GGACCTCCTCTAGCTCGCC 61.198 68.421 0.00 0.00 0.00 5.54
1745 1842 1.152839 AGGACCTCCTCTAGCTCGC 60.153 63.158 0.00 0.00 44.77 5.03
1748 1845 1.075600 GCCAGGACCTCCTCTAGCT 60.076 63.158 0.00 0.00 46.65 3.32
1750 1847 1.388065 CGTGCCAGGACCTCCTCTAG 61.388 65.000 0.00 0.00 46.65 2.43
1751 1848 1.379977 CGTGCCAGGACCTCCTCTA 60.380 63.158 0.00 0.00 46.65 2.43
1752 1849 2.681778 CGTGCCAGGACCTCCTCT 60.682 66.667 0.00 0.00 46.65 3.69
1768 1865 3.131396 GTTTATCAGTAGCCCATGGACG 58.869 50.000 15.22 0.00 0.00 4.79
1786 1884 8.877864 TGATGGGTGTCTTGATTAAATAGTTT 57.122 30.769 0.00 0.00 0.00 2.66
1810 1908 2.286831 CGGGATGTACGTACACTAGCTG 60.287 54.545 29.54 13.95 39.30 4.24
1831 1935 3.127533 GATGCACACAGACGGGCC 61.128 66.667 0.00 0.00 0.00 5.80
1832 1936 3.127533 GGATGCACACAGACGGGC 61.128 66.667 0.00 0.00 0.00 6.13
1840 2022 3.490759 CGCGAGGTGGATGCACAC 61.491 66.667 19.67 11.15 40.60 3.82
1857 2039 2.930682 GACGACTAGTCTTGCCAATTCC 59.069 50.000 20.34 0.00 46.13 3.01
1869 2051 2.174360 GTACCCCCTTTGACGACTAGT 58.826 52.381 0.00 0.00 0.00 2.57
1871 2053 2.173519 CAGTACCCCCTTTGACGACTA 58.826 52.381 0.00 0.00 0.00 2.59
1873 2055 0.036671 CCAGTACCCCCTTTGACGAC 60.037 60.000 0.00 0.00 0.00 4.34
1874 2056 1.833787 GCCAGTACCCCCTTTGACGA 61.834 60.000 0.00 0.00 0.00 4.20
1875 2057 1.376812 GCCAGTACCCCCTTTGACG 60.377 63.158 0.00 0.00 0.00 4.35
1877 2059 1.128809 TTCGCCAGTACCCCCTTTGA 61.129 55.000 0.00 0.00 0.00 2.69
1878 2060 0.676782 CTTCGCCAGTACCCCCTTTG 60.677 60.000 0.00 0.00 0.00 2.77
1879 2061 1.131928 ACTTCGCCAGTACCCCCTTT 61.132 55.000 0.00 0.00 31.97 3.11
1880 2062 1.538135 ACTTCGCCAGTACCCCCTT 60.538 57.895 0.00 0.00 31.97 3.95
1881 2063 2.122056 ACTTCGCCAGTACCCCCT 59.878 61.111 0.00 0.00 31.97 4.79
1882 2064 2.267961 CACTTCGCCAGTACCCCC 59.732 66.667 0.00 0.00 32.76 5.40
1883 2065 1.079336 GTCACTTCGCCAGTACCCC 60.079 63.158 0.00 0.00 32.76 4.95
1886 2068 1.992170 ATTCGTCACTTCGCCAGTAC 58.008 50.000 0.00 0.00 32.76 2.73
1887 2069 3.057386 TGTTATTCGTCACTTCGCCAGTA 60.057 43.478 0.00 0.00 32.76 2.74
1888 2070 2.288579 TGTTATTCGTCACTTCGCCAGT 60.289 45.455 0.00 0.00 35.35 4.00
1889 2071 2.333926 TGTTATTCGTCACTTCGCCAG 58.666 47.619 0.00 0.00 0.00 4.85
1890 2072 2.442212 TGTTATTCGTCACTTCGCCA 57.558 45.000 0.00 0.00 0.00 5.69
1891 2073 2.991190 TCTTGTTATTCGTCACTTCGCC 59.009 45.455 0.00 0.00 0.00 5.54
1892 2074 3.918591 TCTCTTGTTATTCGTCACTTCGC 59.081 43.478 0.00 0.00 0.00 4.70
1893 2075 5.052960 CGATCTCTTGTTATTCGTCACTTCG 60.053 44.000 0.00 0.00 0.00 3.79
1894 2076 5.275974 GCGATCTCTTGTTATTCGTCACTTC 60.276 44.000 0.00 0.00 32.65 3.01
1895 2077 4.563184 GCGATCTCTTGTTATTCGTCACTT 59.437 41.667 0.00 0.00 32.65 3.16
1896 2078 4.106197 GCGATCTCTTGTTATTCGTCACT 58.894 43.478 0.00 0.00 32.65 3.41
1897 2079 3.857665 TGCGATCTCTTGTTATTCGTCAC 59.142 43.478 0.00 0.00 32.65 3.67
1898 2080 4.104696 TGCGATCTCTTGTTATTCGTCA 57.895 40.909 0.00 0.00 32.65 4.35
1899 2081 4.106197 ACTGCGATCTCTTGTTATTCGTC 58.894 43.478 0.00 0.00 32.65 4.20
1900 2082 4.111375 ACTGCGATCTCTTGTTATTCGT 57.889 40.909 0.00 0.00 32.65 3.85
1901 2083 6.417930 TCAATACTGCGATCTCTTGTTATTCG 59.582 38.462 0.00 0.00 0.00 3.34
1902 2084 7.700322 TCAATACTGCGATCTCTTGTTATTC 57.300 36.000 0.00 0.00 0.00 1.75
1903 2085 9.764363 TTATCAATACTGCGATCTCTTGTTATT 57.236 29.630 0.00 0.00 0.00 1.40
1904 2086 9.416794 CTTATCAATACTGCGATCTCTTGTTAT 57.583 33.333 0.00 0.00 0.00 1.89
1905 2087 7.382488 GCTTATCAATACTGCGATCTCTTGTTA 59.618 37.037 0.00 0.00 0.00 2.41
1906 2088 6.201806 GCTTATCAATACTGCGATCTCTTGTT 59.798 38.462 0.00 0.00 0.00 2.83
1907 2089 5.694006 GCTTATCAATACTGCGATCTCTTGT 59.306 40.000 0.00 0.00 0.00 3.16
1908 2090 5.119898 GGCTTATCAATACTGCGATCTCTTG 59.880 44.000 0.00 0.00 0.00 3.02
1909 2091 5.233988 GGCTTATCAATACTGCGATCTCTT 58.766 41.667 0.00 0.00 0.00 2.85
1910 2092 4.322349 GGGCTTATCAATACTGCGATCTCT 60.322 45.833 0.00 0.00 0.00 3.10
1911 2093 3.929610 GGGCTTATCAATACTGCGATCTC 59.070 47.826 0.00 0.00 0.00 2.75
1912 2094 3.580458 AGGGCTTATCAATACTGCGATCT 59.420 43.478 0.00 0.00 0.00 2.75
1913 2095 3.931578 AGGGCTTATCAATACTGCGATC 58.068 45.455 0.00 0.00 0.00 3.69
1914 2096 4.528596 ACTAGGGCTTATCAATACTGCGAT 59.471 41.667 0.00 0.00 0.00 4.58
1915 2097 3.895656 ACTAGGGCTTATCAATACTGCGA 59.104 43.478 0.00 0.00 0.00 5.10
1916 2098 4.238514 GACTAGGGCTTATCAATACTGCG 58.761 47.826 0.00 0.00 0.00 5.18
1917 2099 5.215252 TGACTAGGGCTTATCAATACTGC 57.785 43.478 0.00 0.00 0.00 4.40
1918 2100 9.778741 TTTTATGACTAGGGCTTATCAATACTG 57.221 33.333 0.00 0.00 0.00 2.74
1920 2102 9.220767 CCTTTTATGACTAGGGCTTATCAATAC 57.779 37.037 0.00 0.00 0.00 1.89
1921 2103 8.383175 CCCTTTTATGACTAGGGCTTATCAATA 58.617 37.037 0.00 0.00 42.04 1.90
1922 2104 7.073725 TCCCTTTTATGACTAGGGCTTATCAAT 59.926 37.037 0.00 0.00 46.82 2.57
1923 2105 6.388689 TCCCTTTTATGACTAGGGCTTATCAA 59.611 38.462 0.00 0.00 46.82 2.57
1924 2106 5.908831 TCCCTTTTATGACTAGGGCTTATCA 59.091 40.000 0.00 0.00 46.82 2.15
1925 2107 6.043358 ACTCCCTTTTATGACTAGGGCTTATC 59.957 42.308 0.00 0.00 46.82 1.75
1926 2108 5.911766 ACTCCCTTTTATGACTAGGGCTTAT 59.088 40.000 0.00 0.00 46.82 1.73
1927 2109 5.130477 CACTCCCTTTTATGACTAGGGCTTA 59.870 44.000 0.00 0.00 46.82 3.09
1928 2110 4.080299 CACTCCCTTTTATGACTAGGGCTT 60.080 45.833 0.00 0.00 46.82 4.35
1929 2111 3.456277 CACTCCCTTTTATGACTAGGGCT 59.544 47.826 0.00 0.00 46.82 5.19
1930 2112 3.200165 ACACTCCCTTTTATGACTAGGGC 59.800 47.826 0.00 0.00 46.82 5.19
1932 2114 4.469945 TGGACACTCCCTTTTATGACTAGG 59.530 45.833 0.00 0.00 35.03 3.02
1933 2115 5.677319 TGGACACTCCCTTTTATGACTAG 57.323 43.478 0.00 0.00 35.03 2.57
1934 2116 7.743116 TTATGGACACTCCCTTTTATGACTA 57.257 36.000 0.00 0.00 35.03 2.59
1935 2117 6.636454 TTATGGACACTCCCTTTTATGACT 57.364 37.500 0.00 0.00 35.03 3.41
1936 2118 7.881775 AATTATGGACACTCCCTTTTATGAC 57.118 36.000 0.00 0.00 35.03 3.06
1937 2119 8.748412 CAAAATTATGGACACTCCCTTTTATGA 58.252 33.333 0.00 0.00 35.03 2.15
1938 2120 7.492344 GCAAAATTATGGACACTCCCTTTTATG 59.508 37.037 0.00 0.00 35.03 1.90
1939 2121 7.180051 TGCAAAATTATGGACACTCCCTTTTAT 59.820 33.333 0.00 0.00 35.03 1.40
1940 2122 6.495181 TGCAAAATTATGGACACTCCCTTTTA 59.505 34.615 0.00 0.00 35.03 1.52
1941 2123 5.306678 TGCAAAATTATGGACACTCCCTTTT 59.693 36.000 0.00 0.00 35.03 2.27
1942 2124 4.837860 TGCAAAATTATGGACACTCCCTTT 59.162 37.500 0.00 0.00 35.03 3.11
1943 2125 4.415596 TGCAAAATTATGGACACTCCCTT 58.584 39.130 0.00 0.00 35.03 3.95
1944 2126 4.046286 TGCAAAATTATGGACACTCCCT 57.954 40.909 0.00 0.00 35.03 4.20
1945 2127 4.799564 TTGCAAAATTATGGACACTCCC 57.200 40.909 0.00 0.00 35.03 4.30
1946 2128 7.063780 CAGATTTTGCAAAATTATGGACACTCC 59.936 37.037 32.09 17.64 38.64 3.85
1947 2129 7.814107 TCAGATTTTGCAAAATTATGGACACTC 59.186 33.333 32.09 18.99 38.64 3.51
1948 2130 7.669427 TCAGATTTTGCAAAATTATGGACACT 58.331 30.769 32.09 20.87 38.64 3.55
1949 2131 7.887996 TCAGATTTTGCAAAATTATGGACAC 57.112 32.000 32.09 19.27 38.64 3.67
1950 2132 7.930325 TGTTCAGATTTTGCAAAATTATGGACA 59.070 29.630 34.25 34.25 39.25 4.02
1951 2133 8.309163 TGTTCAGATTTTGCAAAATTATGGAC 57.691 30.769 31.72 31.72 38.64 4.02
1952 2134 8.899427 TTGTTCAGATTTTGCAAAATTATGGA 57.101 26.923 32.09 25.46 38.64 3.41
1953 2135 9.947669 TTTTGTTCAGATTTTGCAAAATTATGG 57.052 25.926 32.09 22.22 38.64 2.74
1996 2261 7.831193 AGCCAACTGACAAGATACTTTTCATAT 59.169 33.333 0.00 0.00 0.00 1.78
2005 2270 5.753921 GGTACATAGCCAACTGACAAGATAC 59.246 44.000 0.00 0.00 0.00 2.24
2011 2279 4.359434 TTTGGTACATAGCCAACTGACA 57.641 40.909 0.00 0.00 44.70 3.58
2028 2296 6.458210 ACAAGTGCTAAATCTTTCCATTTGG 58.542 36.000 12.03 0.00 30.68 3.28
2031 2299 8.903820 GGTATACAAGTGCTAAATCTTTCCATT 58.096 33.333 5.01 0.00 0.00 3.16
2070 2343 4.814224 ATGTTGGCCTGGGTATTAATCT 57.186 40.909 3.32 0.00 0.00 2.40
2076 2349 2.487775 TCACTATGTTGGCCTGGGTAT 58.512 47.619 3.32 0.00 0.00 2.73
2079 2352 1.683943 CATCACTATGTTGGCCTGGG 58.316 55.000 3.32 0.00 0.00 4.45
2080 2353 1.027357 GCATCACTATGTTGGCCTGG 58.973 55.000 3.32 0.00 35.38 4.45
2081 2354 1.027357 GGCATCACTATGTTGGCCTG 58.973 55.000 3.32 0.00 36.86 4.85
2082 2355 0.464373 CGGCATCACTATGTTGGCCT 60.464 55.000 3.32 0.00 38.82 5.19
2083 2356 0.463654 TCGGCATCACTATGTTGGCC 60.464 55.000 0.00 0.00 38.82 5.36
2084 2357 0.657840 GTCGGCATCACTATGTTGGC 59.342 55.000 3.93 3.93 38.70 4.52
2085 2358 2.022764 TGTCGGCATCACTATGTTGG 57.977 50.000 0.00 0.00 35.38 3.77
2126 2405 1.750930 CCTGGATGCTGGATACGCT 59.249 57.895 3.91 0.00 42.51 5.07
2167 2446 2.888834 ATTTCAACATATTGGCCGGC 57.111 45.000 21.18 21.18 36.39 6.13
2168 2447 7.630242 AGATATATTTCAACATATTGGCCGG 57.370 36.000 0.00 0.00 36.39 6.13
2200 2485 0.608035 TACCCAAAAGCTTGAGCCCG 60.608 55.000 0.00 0.00 43.38 6.13
2232 2521 9.331282 GCCTCATTTAGTAATACTGATTTCACT 57.669 33.333 2.68 0.00 0.00 3.41
2233 2522 9.109393 TGCCTCATTTAGTAATACTGATTTCAC 57.891 33.333 2.68 0.00 0.00 3.18
2238 2527 9.851686 TCATTTGCCTCATTTAGTAATACTGAT 57.148 29.630 2.68 0.00 0.00 2.90
2273 2562 8.534333 CGTACCCGTATAAACTACTATAGTCA 57.466 38.462 9.12 0.00 38.26 3.41
2291 2580 2.677524 TCCAGGACCACGTACCCG 60.678 66.667 0.00 0.00 40.83 5.28
2328 2647 6.605995 AGATTACCACATGTGCAGTACTACTA 59.394 38.462 20.81 3.60 0.00 1.82
2329 2648 5.422331 AGATTACCACATGTGCAGTACTACT 59.578 40.000 20.81 12.56 0.00 2.57
2330 2649 5.661458 AGATTACCACATGTGCAGTACTAC 58.339 41.667 20.81 10.87 0.00 2.73
2363 2682 2.748209 AATAAGAAATGGGGTCGGGG 57.252 50.000 0.00 0.00 0.00 5.73
2368 2687 7.978099 AGCTCAAATTAATAAGAAATGGGGT 57.022 32.000 0.00 0.00 0.00 4.95
2374 2693 9.762933 AGCAACAAAGCTCAAATTAATAAGAAA 57.237 25.926 0.00 0.00 42.18 2.52
2375 2694 9.195411 CAGCAACAAAGCTCAAATTAATAAGAA 57.805 29.630 0.00 0.00 44.54 2.52
2377 2696 7.116662 TGCAGCAACAAAGCTCAAATTAATAAG 59.883 33.333 0.00 0.00 44.54 1.73
2378 2697 6.927936 TGCAGCAACAAAGCTCAAATTAATAA 59.072 30.769 0.00 0.00 44.54 1.40
2379 2698 6.453943 TGCAGCAACAAAGCTCAAATTAATA 58.546 32.000 0.00 0.00 44.54 0.98
2380 2699 5.299148 TGCAGCAACAAAGCTCAAATTAAT 58.701 33.333 0.00 0.00 44.54 1.40
2383 2702 3.128349 CTGCAGCAACAAAGCTCAAATT 58.872 40.909 0.00 0.00 44.54 1.82
2394 2718 0.469494 TCTTCAGACCTGCAGCAACA 59.531 50.000 8.66 0.00 0.00 3.33
2396 2721 1.051008 TCTCTTCAGACCTGCAGCAA 58.949 50.000 8.66 0.00 0.00 3.91
2463 2788 4.187694 GTGTCATCTTGCCTCTCTTTAGG 58.812 47.826 0.00 0.00 39.87 2.69
2529 2854 6.946009 AGTGCCAGTGTATATTTTACCTGTTT 59.054 34.615 0.00 0.00 0.00 2.83
2551 2876 1.823610 TCAGCTGATCAGTCTGGAGTG 59.176 52.381 30.11 16.26 35.10 3.51
2555 2880 3.049708 TGTTTCAGCTGATCAGTCTGG 57.950 47.619 30.11 19.36 35.10 3.86
2583 2908 6.151817 AGAGTGAATTTTAGCTGGATGTTTCC 59.848 38.462 0.00 0.00 42.94 3.13
2587 2912 5.645497 GTGAGAGTGAATTTTAGCTGGATGT 59.355 40.000 0.00 0.00 0.00 3.06
2588 2913 5.220548 CGTGAGAGTGAATTTTAGCTGGATG 60.221 44.000 0.00 0.00 0.00 3.51
2592 2917 5.597813 AACGTGAGAGTGAATTTTAGCTG 57.402 39.130 0.00 0.00 0.00 4.24
2605 2930 3.738282 CACCTGAAGAAGAAACGTGAGAG 59.262 47.826 0.00 0.00 0.00 3.20
2607 2932 2.802816 CCACCTGAAGAAGAAACGTGAG 59.197 50.000 0.00 0.00 0.00 3.51
2712 3059 1.746727 CGCGCTCGATGTTCTTGGAG 61.747 60.000 5.56 0.00 38.10 3.86
2807 3160 2.341101 GGGAGCTCGACGTCCTTGA 61.341 63.158 10.58 0.30 32.90 3.02
2910 3263 0.468648 CCTGCATGATCAGCTCCTCA 59.531 55.000 15.20 0.00 32.87 3.86
3204 3560 1.134965 GCAACATGTACTCTCGCCTCT 60.135 52.381 0.00 0.00 0.00 3.69
3207 3563 1.002366 CAGCAACATGTACTCTCGCC 58.998 55.000 0.00 0.00 0.00 5.54
3221 3577 5.009310 GCATCATTATCCATCACTTCAGCAA 59.991 40.000 0.00 0.00 0.00 3.91
3323 3685 4.724279 AACACATCTACAGTTTCCCCTT 57.276 40.909 0.00 0.00 0.00 3.95
3335 3697 3.761897 CCAACCAGGGAAAACACATCTA 58.238 45.455 0.00 0.00 0.00 1.98
3417 3785 9.741168 CAGACAGTTAATATTAACACAGAAACG 57.259 33.333 30.54 15.33 44.14 3.60
3469 3837 7.121382 ACAAACAGGATCATCATAATCCAACT 58.879 34.615 5.05 0.00 44.39 3.16
3472 3840 6.903516 AGACAAACAGGATCATCATAATCCA 58.096 36.000 5.05 0.00 44.39 3.41
3483 3851 8.999431 TCAAAATACAGTTAGACAAACAGGATC 58.001 33.333 0.00 0.00 40.83 3.36
3532 3900 5.476945 GGGTGTCATGTCTTGAAAAATAGGT 59.523 40.000 0.00 0.00 35.70 3.08
3542 3910 1.538047 CCCAAGGGTGTCATGTCTTG 58.462 55.000 0.00 0.00 37.09 3.02
3545 3913 4.743018 CCCCAAGGGTGTCATGTC 57.257 61.111 4.11 0.00 38.25 3.06
3655 4223 4.406326 TGAACTTAGTGTTGGGTACTCACA 59.594 41.667 0.00 0.00 39.30 3.58
3661 4229 4.228824 AGTCCTGAACTTAGTGTTGGGTA 58.771 43.478 0.00 0.00 39.30 3.69
3664 4232 3.005472 TCGAGTCCTGAACTTAGTGTTGG 59.995 47.826 0.00 0.00 38.74 3.77
3669 4237 2.351544 GCGTTCGAGTCCTGAACTTAGT 60.352 50.000 8.63 0.00 42.73 2.24
3672 4240 0.674534 AGCGTTCGAGTCCTGAACTT 59.325 50.000 8.63 0.00 42.73 2.66
3728 4296 3.522553 GTTAGAGCACCAAGTATCGCTT 58.477 45.455 0.00 0.00 38.08 4.68
3735 4303 1.003718 GCCGGTTAGAGCACCAAGT 60.004 57.895 1.90 0.00 36.49 3.16
3738 4306 0.109723 AAAAGCCGGTTAGAGCACCA 59.890 50.000 1.90 0.00 36.49 4.17
3768 4336 8.987890 GTGCAAAAATAAAACCATGTGAAGTAT 58.012 29.630 0.00 0.00 0.00 2.12
3775 4343 5.757808 GTCTGGTGCAAAAATAAAACCATGT 59.242 36.000 0.00 0.00 40.04 3.21
3819 6843 9.729023 CTTAGTTTGTGATTGTTGAATTGTGTA 57.271 29.630 0.00 0.00 0.00 2.90
3836 6868 8.848474 ATGTAGTTGAGTAATGCTTAGTTTGT 57.152 30.769 0.00 0.00 0.00 2.83
3843 6875 7.042456 CGCTGATTATGTAGTTGAGTAATGCTT 60.042 37.037 0.00 0.00 0.00 3.91
3910 6946 2.858729 CGCAATAAACGCTGATGCC 58.141 52.632 0.00 0.00 33.55 4.40
3919 6955 2.014128 TCTAGGCCTTGCGCAATAAAC 58.986 47.619 25.26 14.09 40.31 2.01
3997 7033 4.281941 TCCTTCCTCTTCATCATATCACGG 59.718 45.833 0.00 0.00 0.00 4.94
4008 7044 3.190383 TGTCCTCATCCTTCCTCTTCA 57.810 47.619 0.00 0.00 0.00 3.02
4019 7055 1.406898 TCAGCGTCTCATGTCCTCATC 59.593 52.381 0.00 0.00 31.15 2.92
4020 7056 1.135915 GTCAGCGTCTCATGTCCTCAT 59.864 52.381 0.00 0.00 34.21 2.90
4021 7057 0.528017 GTCAGCGTCTCATGTCCTCA 59.472 55.000 0.00 0.00 0.00 3.86
4030 7066 2.179517 CTCACCGGTCAGCGTCTC 59.820 66.667 2.59 0.00 0.00 3.36
4041 7077 1.202582 CTAACAGACCTCACCTCACCG 59.797 57.143 0.00 0.00 0.00 4.94
4056 7092 4.764050 TGGCCTCGGATTTATTCTAACA 57.236 40.909 3.32 0.00 0.00 2.41
4057 7093 4.389077 CGATGGCCTCGGATTTATTCTAAC 59.611 45.833 14.53 0.00 43.82 2.34
4058 7094 4.566004 CGATGGCCTCGGATTTATTCTAA 58.434 43.478 14.53 0.00 43.82 2.10
4059 7095 4.188247 CGATGGCCTCGGATTTATTCTA 57.812 45.455 14.53 0.00 43.82 2.10
4060 7096 3.045601 CGATGGCCTCGGATTTATTCT 57.954 47.619 14.53 0.00 43.82 2.40
4071 7107 0.389166 GGATGATCGACGATGGCCTC 60.389 60.000 16.49 1.34 0.00 4.70
4072 7108 1.668294 GGATGATCGACGATGGCCT 59.332 57.895 16.49 0.00 0.00 5.19
4073 7109 1.734477 CGGATGATCGACGATGGCC 60.734 63.158 16.49 11.96 0.00 5.36
4074 7110 0.730834 CTCGGATGATCGACGATGGC 60.731 60.000 16.49 2.04 35.93 4.40
4075 7111 0.109551 CCTCGGATGATCGACGATGG 60.110 60.000 16.49 4.35 35.93 3.51
4076 7112 0.875059 TCCTCGGATGATCGACGATG 59.125 55.000 16.49 0.00 35.93 3.84
4077 7113 1.740585 GATCCTCGGATGATCGACGAT 59.259 52.381 10.78 10.78 37.52 3.73
4078 7114 1.157585 GATCCTCGGATGATCGACGA 58.842 55.000 2.58 0.00 34.60 4.20
4079 7115 0.875059 TGATCCTCGGATGATCGACG 59.125 55.000 15.49 0.00 41.22 5.12
4080 7116 3.053455 GTTTGATCCTCGGATGATCGAC 58.947 50.000 15.49 13.10 41.22 4.20
4081 7117 2.693074 TGTTTGATCCTCGGATGATCGA 59.307 45.455 15.49 12.20 41.22 3.59
4082 7118 3.097877 TGTTTGATCCTCGGATGATCG 57.902 47.619 15.49 0.00 41.22 3.69
4083 7119 5.059161 TGATTGTTTGATCCTCGGATGATC 58.941 41.667 14.18 14.18 39.25 2.92
4084 7120 5.039920 TGATTGTTTGATCCTCGGATGAT 57.960 39.130 2.58 0.00 34.60 2.45
4085 7121 4.486125 TGATTGTTTGATCCTCGGATGA 57.514 40.909 2.58 0.00 34.60 2.92
4086 7122 4.818005 TGATGATTGTTTGATCCTCGGATG 59.182 41.667 2.58 0.00 34.60 3.51
4087 7123 4.818546 GTGATGATTGTTTGATCCTCGGAT 59.181 41.667 0.00 0.00 37.59 4.18
4088 7124 4.191544 GTGATGATTGTTTGATCCTCGGA 58.808 43.478 0.00 0.00 0.00 4.55
4089 7125 3.940852 TGTGATGATTGTTTGATCCTCGG 59.059 43.478 0.00 0.00 0.00 4.63
4090 7126 4.493057 CGTGTGATGATTGTTTGATCCTCG 60.493 45.833 0.00 0.00 0.00 4.63
4091 7127 4.631377 TCGTGTGATGATTGTTTGATCCTC 59.369 41.667 0.00 0.00 0.00 3.71
4092 7128 4.578871 TCGTGTGATGATTGTTTGATCCT 58.421 39.130 0.00 0.00 0.00 3.24
4093 7129 4.728882 GCTCGTGTGATGATTGTTTGATCC 60.729 45.833 0.00 0.00 0.00 3.36
4094 7130 4.142838 TGCTCGTGTGATGATTGTTTGATC 60.143 41.667 0.00 0.00 0.00 2.92
4095 7131 3.752747 TGCTCGTGTGATGATTGTTTGAT 59.247 39.130 0.00 0.00 0.00 2.57
4096 7132 3.137533 TGCTCGTGTGATGATTGTTTGA 58.862 40.909 0.00 0.00 0.00 2.69
4097 7133 3.541071 TGCTCGTGTGATGATTGTTTG 57.459 42.857 0.00 0.00 0.00 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.