Multiple sequence alignment - TraesCS2B01G381700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G381700 chr2B 100.000 3362 0 0 1 3362 545272957 545269596 0.000000e+00 6209.0
1 TraesCS2B01G381700 chr2B 87.970 133 14 2 593 724 751177829 751177960 4.490000e-34 156.0
2 TraesCS2B01G381700 chr2D 92.516 2619 151 17 760 3362 466686031 466683442 0.000000e+00 3709.0
3 TraesCS2B01G381700 chr2A 91.400 2407 133 32 785 3154 607831996 607829627 0.000000e+00 3230.0
4 TraesCS2B01G381700 chr2A 85.315 143 17 4 586 726 40542133 40541993 9.720000e-31 145.0
5 TraesCS2B01G381700 chr1D 87.640 712 52 14 2682 3362 211697980 211698686 0.000000e+00 795.0
6 TraesCS2B01G381700 chr1D 89.600 125 12 1 602 726 49900194 49900071 1.250000e-34 158.0
7 TraesCS2B01G381700 chr7B 90.270 370 32 2 2 368 740684823 740684455 6.520000e-132 481.0
8 TraesCS2B01G381700 chr7B 89.757 371 33 3 1 368 740708021 740707653 1.410000e-128 470.0
9 TraesCS2B01G381700 chr3B 85.270 482 41 14 2900 3351 486885173 486884692 1.410000e-128 470.0
10 TraesCS2B01G381700 chr3B 92.417 211 16 0 2685 2895 486895421 486895211 5.450000e-78 302.0
11 TraesCS2B01G381700 chr3B 89.431 123 11 2 605 726 801234395 801234274 1.620000e-33 154.0
12 TraesCS2B01G381700 chr3B 88.281 128 14 1 602 729 726607423 726607549 5.810000e-33 152.0
13 TraesCS2B01G381700 chr3B 79.630 162 17 12 423 582 66628361 66628214 5.930000e-18 102.0
14 TraesCS2B01G381700 chrUn 88.462 364 40 2 7 368 2566513 2566876 3.980000e-119 438.0
15 TraesCS2B01G381700 chr4D 88.347 369 36 7 4 368 435067013 435066648 1.430000e-118 436.0
16 TraesCS2B01G381700 chr5B 85.753 365 49 3 5 367 458287663 458288026 1.890000e-102 383.0
17 TraesCS2B01G381700 chr1B 90.612 245 20 3 127 370 598649944 598650186 4.180000e-84 322.0
18 TraesCS2B01G381700 chr1B 90.909 99 5 2 1 95 598649849 598649947 2.720000e-26 130.0
19 TraesCS2B01G381700 chr4A 89.552 134 11 3 590 722 604661340 604661209 2.070000e-37 167.0
20 TraesCS2B01G381700 chr4A 85.816 141 17 3 584 722 215247679 215247540 2.700000e-31 147.0
21 TraesCS2B01G381700 chr3A 90.164 122 11 1 604 725 528133366 528133486 1.250000e-34 158.0
22 TraesCS2B01G381700 chr7A 88.095 126 14 1 601 726 4805287 4805163 7.520000e-32 148.0
23 TraesCS2B01G381700 chr5D 87.805 123 13 1 423 543 538755926 538755804 3.500000e-30 143.0
24 TraesCS2B01G381700 chr5A 81.667 120 14 5 485 597 568322331 568322449 3.570000e-15 93.5
25 TraesCS2B01G381700 chr7D 87.879 66 4 2 517 582 550685837 550685776 1.290000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G381700 chr2B 545269596 545272957 3361 True 6209 6209 100.000 1 3362 1 chr2B.!!$R1 3361
1 TraesCS2B01G381700 chr2D 466683442 466686031 2589 True 3709 3709 92.516 760 3362 1 chr2D.!!$R1 2602
2 TraesCS2B01G381700 chr2A 607829627 607831996 2369 True 3230 3230 91.400 785 3154 1 chr2A.!!$R2 2369
3 TraesCS2B01G381700 chr1D 211697980 211698686 706 False 795 795 87.640 2682 3362 1 chr1D.!!$F1 680

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 514 0.030638 CTGGACGTGCTGGGTTTTTG 59.969 55.000 8.99 0.0 0.0 2.44 F
589 590 0.101399 GACGCCGACATCTCACATCT 59.899 55.000 0.00 0.0 0.0 2.90 F
590 591 1.333931 GACGCCGACATCTCACATCTA 59.666 52.381 0.00 0.0 0.0 1.98 F
1106 1112 1.746991 GCCAAGAAGAAGCCTCCGG 60.747 63.158 0.00 0.0 0.0 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1413 1428 0.531200 GAAGAACCACTCGGACCGAT 59.469 55.000 18.71 0.88 34.61 4.18 R
1414 1429 0.538977 AGAAGAACCACTCGGACCGA 60.539 55.000 17.28 17.28 35.59 4.69 R
1418 1433 1.000607 CACGAAGAAGAACCACTCGGA 60.001 52.381 0.00 0.00 35.59 4.55 R
3061 3125 0.109086 CTGTGCTCCCAGTCGTACTG 60.109 60.000 7.72 7.72 45.53 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.753262 CAGGAGGGGATAAGGTCACG 59.247 60.000 0.00 0.00 0.00 4.35
20 21 1.049289 AGGAGGGGATAAGGTCACGC 61.049 60.000 0.00 0.00 0.00 5.34
21 22 1.067582 GAGGGGATAAGGTCACGCG 59.932 63.158 3.53 3.53 0.00 6.01
22 23 1.380785 AGGGGATAAGGTCACGCGA 60.381 57.895 15.93 0.00 0.00 5.87
23 24 1.067582 GGGGATAAGGTCACGCGAG 59.932 63.158 15.93 4.59 0.00 5.03
24 25 1.067582 GGGATAAGGTCACGCGAGG 59.932 63.158 15.93 4.29 0.00 4.63
25 26 1.067582 GGATAAGGTCACGCGAGGG 59.932 63.158 15.93 1.17 0.00 4.30
26 27 1.389609 GGATAAGGTCACGCGAGGGA 61.390 60.000 15.93 4.14 44.68 4.20
32 33 3.760035 TCACGCGAGGGAAGGAGC 61.760 66.667 15.93 0.00 43.28 4.70
33 34 4.821589 CACGCGAGGGAAGGAGCC 62.822 72.222 15.93 0.00 35.60 4.70
36 37 4.214327 GCGAGGGAAGGAGCCGAG 62.214 72.222 0.00 0.00 0.00 4.63
37 38 4.214327 CGAGGGAAGGAGCCGAGC 62.214 72.222 0.00 0.00 0.00 5.03
38 39 4.214327 GAGGGAAGGAGCCGAGCG 62.214 72.222 0.00 0.00 0.00 5.03
39 40 4.761058 AGGGAAGGAGCCGAGCGA 62.761 66.667 0.00 0.00 0.00 4.93
40 41 4.214327 GGGAAGGAGCCGAGCGAG 62.214 72.222 0.00 0.00 0.00 5.03
41 42 4.882396 GGAAGGAGCCGAGCGAGC 62.882 72.222 0.00 0.00 0.00 5.03
59 60 3.403558 GAGGCCTGGGACCCTGTC 61.404 72.222 12.00 4.48 0.00 3.51
62 63 4.083862 GCCTGGGACCCTGTCGTC 62.084 72.222 13.00 0.00 32.65 4.20
68 69 4.115270 GACCCTGTCGTCCTCCTT 57.885 61.111 0.00 0.00 0.00 3.36
69 70 1.891616 GACCCTGTCGTCCTCCTTC 59.108 63.158 0.00 0.00 0.00 3.46
70 71 0.612453 GACCCTGTCGTCCTCCTTCT 60.612 60.000 0.00 0.00 0.00 2.85
71 72 0.900647 ACCCTGTCGTCCTCCTTCTG 60.901 60.000 0.00 0.00 0.00 3.02
72 73 1.608717 CCCTGTCGTCCTCCTTCTGG 61.609 65.000 0.00 0.00 0.00 3.86
73 74 0.612174 CCTGTCGTCCTCCTTCTGGA 60.612 60.000 0.00 0.00 40.69 3.86
79 80 0.382515 GTCCTCCTTCTGGACGATCG 59.617 60.000 14.88 14.88 43.55 3.69
80 81 0.034380 TCCTCCTTCTGGACGATCGT 60.034 55.000 22.97 22.97 37.46 3.73
81 82 0.382515 CCTCCTTCTGGACGATCGTC 59.617 60.000 34.70 34.70 43.87 4.20
89 90 4.194720 GACGATCGTCCTGCGGCT 62.195 66.667 33.06 2.61 41.72 5.52
90 91 4.498520 ACGATCGTCCTGCGGCTG 62.499 66.667 16.60 0.00 41.72 4.85
92 93 3.838271 GATCGTCCTGCGGCTGGA 61.838 66.667 22.80 22.80 41.72 3.86
93 94 4.148825 ATCGTCCTGCGGCTGGAC 62.149 66.667 35.63 35.63 45.13 4.02
96 97 4.148825 GTCCTGCGGCTGGACGAT 62.149 66.667 33.60 0.00 41.27 3.73
97 98 3.390521 TCCTGCGGCTGGACGATT 61.391 61.111 22.80 0.00 35.47 3.34
98 99 3.197790 CCTGCGGCTGGACGATTG 61.198 66.667 20.02 0.00 35.47 2.67
99 100 3.197790 CTGCGGCTGGACGATTGG 61.198 66.667 0.00 0.00 35.47 3.16
100 101 4.776322 TGCGGCTGGACGATTGGG 62.776 66.667 0.00 0.00 35.47 4.12
104 105 4.115199 GCTGGACGATTGGGCCCT 62.115 66.667 25.70 2.15 0.00 5.19
105 106 2.124570 CTGGACGATTGGGCCCTG 60.125 66.667 25.70 12.81 0.00 4.45
106 107 2.933287 TGGACGATTGGGCCCTGT 60.933 61.111 25.70 16.21 0.00 4.00
107 108 2.124695 GGACGATTGGGCCCTGTC 60.125 66.667 25.70 23.05 0.00 3.51
108 109 2.511600 GACGATTGGGCCCTGTCG 60.512 66.667 33.49 33.49 39.78 4.35
109 110 3.319198 ACGATTGGGCCCTGTCGT 61.319 61.111 34.53 34.53 41.90 4.34
110 111 2.511600 CGATTGGGCCCTGTCGTC 60.512 66.667 29.69 17.44 0.00 4.20
111 112 2.990479 GATTGGGCCCTGTCGTCT 59.010 61.111 25.70 0.00 0.00 4.18
112 113 1.450312 GATTGGGCCCTGTCGTCTG 60.450 63.158 25.70 0.00 0.00 3.51
113 114 2.876368 GATTGGGCCCTGTCGTCTGG 62.876 65.000 25.70 0.00 0.00 3.86
118 119 3.775654 CCCTGTCGTCTGGGCCTC 61.776 72.222 11.37 0.00 43.90 4.70
119 120 2.997315 CCTGTCGTCTGGGCCTCA 60.997 66.667 4.53 0.00 0.00 3.86
120 121 2.575993 CTGTCGTCTGGGCCTCAG 59.424 66.667 13.43 13.43 44.68 3.35
121 122 3.655810 CTGTCGTCTGGGCCTCAGC 62.656 68.421 14.49 9.75 43.06 4.26
146 147 4.664677 GGCCGTGCACAGACGAGT 62.665 66.667 18.64 0.00 42.10 4.18
147 148 3.406361 GCCGTGCACAGACGAGTG 61.406 66.667 18.64 0.00 42.10 3.51
148 149 2.734723 CCGTGCACAGACGAGTGG 60.735 66.667 18.64 2.99 42.10 4.00
149 150 2.335011 CGTGCACAGACGAGTGGA 59.665 61.111 18.64 4.09 42.10 4.02
150 151 1.299850 CGTGCACAGACGAGTGGAA 60.300 57.895 18.64 0.00 41.58 3.53
151 152 1.278172 CGTGCACAGACGAGTGGAAG 61.278 60.000 18.64 5.39 41.58 3.46
152 153 1.300931 TGCACAGACGAGTGGAAGC 60.301 57.895 8.86 0.00 36.89 3.86
153 154 2.375766 GCACAGACGAGTGGAAGCG 61.376 63.158 8.86 0.00 39.87 4.68
154 155 2.049063 ACAGACGAGTGGAAGCGC 60.049 61.111 0.00 0.00 0.00 5.92
155 156 2.259818 CAGACGAGTGGAAGCGCT 59.740 61.111 2.64 2.64 0.00 5.92
156 157 2.091112 CAGACGAGTGGAAGCGCTG 61.091 63.158 12.58 0.00 0.00 5.18
157 158 3.482783 GACGAGTGGAAGCGCTGC 61.483 66.667 12.58 9.65 0.00 5.25
160 161 3.482783 GAGTGGAAGCGCTGCGAC 61.483 66.667 28.07 22.01 0.00 5.19
174 175 4.524318 CGACGTGGCCGGGCTAAT 62.524 66.667 29.87 13.92 38.78 1.73
175 176 2.588034 GACGTGGCCGGGCTAATC 60.588 66.667 29.87 18.55 38.78 1.75
176 177 4.524318 ACGTGGCCGGGCTAATCG 62.524 66.667 29.87 26.15 38.78 3.34
177 178 4.524318 CGTGGCCGGGCTAATCGT 62.524 66.667 29.87 0.00 0.00 3.73
178 179 2.588034 GTGGCCGGGCTAATCGTC 60.588 66.667 29.87 6.91 0.00 4.20
179 180 4.215742 TGGCCGGGCTAATCGTCG 62.216 66.667 29.87 0.00 0.00 5.12
180 181 3.908081 GGCCGGGCTAATCGTCGA 61.908 66.667 22.87 0.00 0.00 4.20
181 182 2.657620 GCCGGGCTAATCGTCGAC 60.658 66.667 12.87 5.18 0.00 4.20
182 183 2.027169 CCGGGCTAATCGTCGACC 59.973 66.667 10.58 0.00 0.00 4.79
183 184 2.353145 CGGGCTAATCGTCGACCG 60.353 66.667 10.58 6.81 38.13 4.79
184 185 2.657620 GGGCTAATCGTCGACCGC 60.658 66.667 10.58 5.04 36.19 5.68
185 186 2.657620 GGCTAATCGTCGACCGCC 60.658 66.667 10.58 13.40 36.19 6.13
186 187 2.103538 GCTAATCGTCGACCGCCA 59.896 61.111 10.58 0.00 36.19 5.69
187 188 2.228914 GCTAATCGTCGACCGCCAC 61.229 63.158 10.58 0.00 36.19 5.01
188 189 1.937846 CTAATCGTCGACCGCCACG 60.938 63.158 10.58 0.00 37.36 4.94
189 190 2.588146 CTAATCGTCGACCGCCACGT 62.588 60.000 10.58 0.00 37.30 4.49
190 191 2.854079 TAATCGTCGACCGCCACGTG 62.854 60.000 9.08 9.08 37.30 4.49
195 196 3.740397 CGACCGCCACGTGGAGTA 61.740 66.667 38.30 0.00 36.58 2.59
196 197 2.126189 GACCGCCACGTGGAGTAC 60.126 66.667 38.30 24.28 36.58 2.73
205 206 3.001406 GTGGAGTACGGGCCACCT 61.001 66.667 18.90 0.00 46.91 4.00
206 207 3.000819 TGGAGTACGGGCCACCTG 61.001 66.667 4.39 0.00 35.68 4.00
207 208 3.001406 GGAGTACGGGCCACCTGT 61.001 66.667 4.39 3.17 46.08 4.00
208 209 2.577593 GAGTACGGGCCACCTGTC 59.422 66.667 4.39 0.00 42.88 3.51
209 210 3.352338 GAGTACGGGCCACCTGTCG 62.352 68.421 4.39 0.00 42.88 4.35
210 211 3.688159 GTACGGGCCACCTGTCGT 61.688 66.667 4.39 6.37 42.88 4.34
211 212 3.376078 TACGGGCCACCTGTCGTC 61.376 66.667 4.39 0.00 42.88 4.20
214 215 4.736896 GGGCCACCTGTCGTCGTC 62.737 72.222 4.39 0.00 0.00 4.20
215 216 4.736896 GGCCACCTGTCGTCGTCC 62.737 72.222 0.00 0.00 0.00 4.79
216 217 3.681835 GCCACCTGTCGTCGTCCT 61.682 66.667 0.00 0.00 0.00 3.85
217 218 2.338015 GCCACCTGTCGTCGTCCTA 61.338 63.158 0.00 0.00 0.00 2.94
218 219 1.664321 GCCACCTGTCGTCGTCCTAT 61.664 60.000 0.00 0.00 0.00 2.57
219 220 1.671979 CCACCTGTCGTCGTCCTATA 58.328 55.000 0.00 0.00 0.00 1.31
220 221 1.602851 CCACCTGTCGTCGTCCTATAG 59.397 57.143 0.00 0.00 0.00 1.31
221 222 1.602851 CACCTGTCGTCGTCCTATAGG 59.397 57.143 13.07 13.07 0.00 2.57
222 223 0.592148 CCTGTCGTCGTCCTATAGGC 59.408 60.000 14.50 8.38 34.44 3.93
223 224 0.592148 CTGTCGTCGTCCTATAGGCC 59.408 60.000 14.50 0.92 34.44 5.19
224 225 1.162181 TGTCGTCGTCCTATAGGCCG 61.162 60.000 16.03 16.03 38.01 6.13
225 226 0.882042 GTCGTCGTCCTATAGGCCGA 60.882 60.000 20.44 20.44 43.82 5.54
229 230 2.469274 TCGTCCTATAGGCCGACTAG 57.531 55.000 20.44 3.72 40.95 2.57
230 231 0.803740 CGTCCTATAGGCCGACTAGC 59.196 60.000 17.16 0.00 39.16 3.42
242 243 2.869636 GACTAGCCTCAGTCGTCCA 58.130 57.895 0.00 0.00 35.92 4.02
243 244 0.736053 GACTAGCCTCAGTCGTCCAG 59.264 60.000 0.00 0.00 35.92 3.86
244 245 1.316706 ACTAGCCTCAGTCGTCCAGC 61.317 60.000 0.00 0.00 0.00 4.85
245 246 1.304134 TAGCCTCAGTCGTCCAGCA 60.304 57.895 0.00 0.00 0.00 4.41
246 247 1.315981 TAGCCTCAGTCGTCCAGCAG 61.316 60.000 0.00 0.00 0.00 4.24
247 248 2.936912 GCCTCAGTCGTCCAGCAGT 61.937 63.158 0.00 0.00 0.00 4.40
248 249 1.595993 GCCTCAGTCGTCCAGCAGTA 61.596 60.000 0.00 0.00 0.00 2.74
249 250 0.453793 CCTCAGTCGTCCAGCAGTAG 59.546 60.000 0.00 0.00 0.00 2.57
250 251 0.453793 CTCAGTCGTCCAGCAGTAGG 59.546 60.000 0.00 0.00 0.00 3.18
251 252 0.037734 TCAGTCGTCCAGCAGTAGGA 59.962 55.000 0.00 0.00 0.00 2.94
258 259 1.609555 GTCCAGCAGTAGGACGATAGG 59.390 57.143 0.00 0.00 45.35 2.57
259 260 0.962489 CCAGCAGTAGGACGATAGGG 59.038 60.000 0.00 0.00 43.77 3.53
260 261 1.693627 CAGCAGTAGGACGATAGGGT 58.306 55.000 0.00 0.00 43.77 4.34
261 262 2.032620 CAGCAGTAGGACGATAGGGTT 58.967 52.381 0.00 0.00 43.77 4.11
262 263 2.034812 CAGCAGTAGGACGATAGGGTTC 59.965 54.545 0.00 0.00 43.77 3.62
263 264 2.029623 GCAGTAGGACGATAGGGTTCA 58.970 52.381 0.00 0.00 43.77 3.18
264 265 2.429610 GCAGTAGGACGATAGGGTTCAA 59.570 50.000 0.00 0.00 43.77 2.69
265 266 3.069729 GCAGTAGGACGATAGGGTTCAAT 59.930 47.826 0.00 0.00 43.77 2.57
266 267 4.796618 GCAGTAGGACGATAGGGTTCAATC 60.797 50.000 0.00 0.00 43.77 2.67
272 273 3.014604 CGATAGGGTTCAATCGTCCTC 57.985 52.381 0.00 0.00 40.01 3.71
273 274 2.288273 CGATAGGGTTCAATCGTCCTCC 60.288 54.545 0.00 0.00 40.01 4.30
274 275 2.241281 TAGGGTTCAATCGTCCTCCA 57.759 50.000 0.00 0.00 0.00 3.86
275 276 0.905357 AGGGTTCAATCGTCCTCCAG 59.095 55.000 0.00 0.00 0.00 3.86
276 277 0.744771 GGGTTCAATCGTCCTCCAGC 60.745 60.000 0.00 0.00 0.00 4.85
277 278 0.250513 GGTTCAATCGTCCTCCAGCT 59.749 55.000 0.00 0.00 0.00 4.24
278 279 1.363744 GTTCAATCGTCCTCCAGCTG 58.636 55.000 6.78 6.78 0.00 4.24
279 280 0.250234 TTCAATCGTCCTCCAGCTGG 59.750 55.000 27.87 27.87 0.00 4.85
280 281 0.614697 TCAATCGTCCTCCAGCTGGA 60.615 55.000 33.04 33.04 43.08 3.86
284 285 2.888863 GTCCTCCAGCTGGACGAG 59.111 66.667 32.00 21.35 43.55 4.18
285 286 2.363018 TCCTCCAGCTGGACGAGG 60.363 66.667 32.00 28.86 43.92 4.63
286 287 4.154347 CCTCCAGCTGGACGAGGC 62.154 72.222 32.00 0.00 39.78 4.70
287 288 4.154347 CTCCAGCTGGACGAGGCC 62.154 72.222 32.00 0.00 39.78 5.19
305 306 7.749539 CGAGGCCGTATTATTTTTGAAAAAT 57.250 32.000 18.56 18.56 0.00 1.82
306 307 8.844441 CGAGGCCGTATTATTTTTGAAAAATA 57.156 30.769 16.68 16.68 0.00 1.40
307 308 9.291664 CGAGGCCGTATTATTTTTGAAAAATAA 57.708 29.630 27.89 27.89 36.77 1.40
384 385 2.260844 GCCATAAGCTACATCCAGCA 57.739 50.000 0.00 0.00 44.35 4.41
385 386 1.876156 GCCATAAGCTACATCCAGCAC 59.124 52.381 0.00 0.00 44.35 4.40
386 387 2.138320 CCATAAGCTACATCCAGCACG 58.862 52.381 0.00 0.00 44.35 5.34
387 388 2.138320 CATAAGCTACATCCAGCACGG 58.862 52.381 0.00 0.00 44.35 4.94
388 389 0.179084 TAAGCTACATCCAGCACGGC 60.179 55.000 0.00 0.00 44.35 5.68
389 390 2.125147 GCTACATCCAGCACGGCA 60.125 61.111 0.00 0.00 41.40 5.69
390 391 1.524621 GCTACATCCAGCACGGCAT 60.525 57.895 0.00 0.00 41.40 4.40
391 392 1.502163 GCTACATCCAGCACGGCATC 61.502 60.000 0.00 0.00 41.40 3.91
392 393 1.217585 CTACATCCAGCACGGCATCG 61.218 60.000 0.00 0.00 43.02 3.84
393 394 3.945434 CATCCAGCACGGCATCGC 61.945 66.667 0.00 0.00 40.63 4.58
397 398 4.505217 CAGCACGGCATCGCGAAC 62.505 66.667 15.24 8.67 40.63 3.95
400 401 3.773630 CACGGCATCGCGAACGTT 61.774 61.111 26.56 0.00 41.18 3.99
401 402 3.475774 ACGGCATCGCGAACGTTC 61.476 61.111 24.45 18.47 41.18 3.95
402 403 3.474904 CGGCATCGCGAACGTTCA 61.475 61.111 26.71 9.14 41.18 3.18
403 404 2.798501 CGGCATCGCGAACGTTCAT 61.799 57.895 26.71 11.11 41.18 2.57
404 405 1.012234 GGCATCGCGAACGTTCATC 60.012 57.895 26.71 16.49 41.18 2.92
405 406 1.012234 GCATCGCGAACGTTCATCC 60.012 57.895 26.71 13.57 41.18 3.51
406 407 1.636340 CATCGCGAACGTTCATCCC 59.364 57.895 26.71 11.26 41.18 3.85
407 408 1.520787 ATCGCGAACGTTCATCCCC 60.521 57.895 26.71 8.99 41.18 4.81
408 409 3.550992 CGCGAACGTTCATCCCCG 61.551 66.667 26.71 14.03 33.53 5.73
409 410 2.125832 GCGAACGTTCATCCCCGA 60.126 61.111 26.71 0.00 0.00 5.14
410 411 1.520787 GCGAACGTTCATCCCCGAT 60.521 57.895 26.71 0.00 0.00 4.18
411 412 1.087771 GCGAACGTTCATCCCCGATT 61.088 55.000 26.71 0.00 0.00 3.34
412 413 0.928229 CGAACGTTCATCCCCGATTC 59.072 55.000 26.71 0.00 0.00 2.52
413 414 1.737696 CGAACGTTCATCCCCGATTCA 60.738 52.381 26.71 0.00 0.00 2.57
414 415 1.933853 GAACGTTCATCCCCGATTCAG 59.066 52.381 23.12 0.00 0.00 3.02
415 416 0.462047 ACGTTCATCCCCGATTCAGC 60.462 55.000 0.00 0.00 0.00 4.26
416 417 0.461870 CGTTCATCCCCGATTCAGCA 60.462 55.000 0.00 0.00 0.00 4.41
417 418 1.750193 GTTCATCCCCGATTCAGCAA 58.250 50.000 0.00 0.00 0.00 3.91
418 419 1.401905 GTTCATCCCCGATTCAGCAAC 59.598 52.381 0.00 0.00 0.00 4.17
419 420 0.461870 TCATCCCCGATTCAGCAACG 60.462 55.000 0.00 0.00 0.00 4.10
420 421 1.819632 ATCCCCGATTCAGCAACGC 60.820 57.895 0.00 0.00 0.00 4.84
421 422 3.508840 CCCCGATTCAGCAACGCC 61.509 66.667 0.00 0.00 0.00 5.68
422 423 3.864686 CCCGATTCAGCAACGCCG 61.865 66.667 0.00 0.00 0.00 6.46
423 424 4.520846 CCGATTCAGCAACGCCGC 62.521 66.667 0.00 0.00 0.00 6.53
424 425 3.787676 CGATTCAGCAACGCCGCA 61.788 61.111 0.00 0.00 0.00 5.69
425 426 2.202349 GATTCAGCAACGCCGCAC 60.202 61.111 0.00 0.00 0.00 5.34
426 427 3.667429 GATTCAGCAACGCCGCACC 62.667 63.158 0.00 0.00 0.00 5.01
429 430 4.041917 CAGCAACGCCGCACCATT 62.042 61.111 0.00 0.00 0.00 3.16
430 431 4.041917 AGCAACGCCGCACCATTG 62.042 61.111 0.00 0.00 0.00 2.82
454 455 1.351012 GCATTGTGCAGAGCTAGCG 59.649 57.895 9.55 0.00 44.26 4.26
455 456 1.086067 GCATTGTGCAGAGCTAGCGA 61.086 55.000 9.55 0.00 44.26 4.93
456 457 1.579698 CATTGTGCAGAGCTAGCGAT 58.420 50.000 9.55 0.00 33.85 4.58
457 458 1.526041 CATTGTGCAGAGCTAGCGATC 59.474 52.381 9.55 2.04 33.85 3.69
458 459 0.532115 TTGTGCAGAGCTAGCGATCA 59.468 50.000 9.55 3.54 33.85 2.92
459 460 0.101939 TGTGCAGAGCTAGCGATCAG 59.898 55.000 9.55 0.29 33.85 2.90
460 461 0.383590 GTGCAGAGCTAGCGATCAGA 59.616 55.000 9.55 0.00 33.85 3.27
461 462 1.000385 GTGCAGAGCTAGCGATCAGAT 60.000 52.381 9.55 0.00 33.85 2.90
462 463 2.227626 GTGCAGAGCTAGCGATCAGATA 59.772 50.000 9.55 0.00 33.85 1.98
463 464 3.087781 TGCAGAGCTAGCGATCAGATAT 58.912 45.455 9.55 0.00 33.85 1.63
464 465 4.095632 GTGCAGAGCTAGCGATCAGATATA 59.904 45.833 9.55 0.00 33.85 0.86
465 466 4.095632 TGCAGAGCTAGCGATCAGATATAC 59.904 45.833 9.55 0.00 33.85 1.47
466 467 4.785025 GCAGAGCTAGCGATCAGATATACG 60.785 50.000 9.55 0.00 0.00 3.06
467 468 4.331443 CAGAGCTAGCGATCAGATATACGT 59.669 45.833 9.55 0.00 0.00 3.57
468 469 4.938832 AGAGCTAGCGATCAGATATACGTT 59.061 41.667 9.55 0.00 0.00 3.99
469 470 6.036191 CAGAGCTAGCGATCAGATATACGTTA 59.964 42.308 9.55 0.00 0.00 3.18
470 471 6.594547 AGAGCTAGCGATCAGATATACGTTAA 59.405 38.462 9.55 0.00 0.00 2.01
471 472 6.777101 AGCTAGCGATCAGATATACGTTAAG 58.223 40.000 9.55 0.00 0.00 1.85
472 473 5.966503 GCTAGCGATCAGATATACGTTAAGG 59.033 44.000 0.00 0.00 0.00 2.69
473 474 4.734917 AGCGATCAGATATACGTTAAGGC 58.265 43.478 0.00 0.00 0.00 4.35
474 475 3.858238 GCGATCAGATATACGTTAAGGCC 59.142 47.826 0.00 0.00 0.00 5.19
475 476 4.096311 CGATCAGATATACGTTAAGGCCG 58.904 47.826 0.00 0.00 0.00 6.13
476 477 3.928727 TCAGATATACGTTAAGGCCGG 57.071 47.619 0.00 0.00 0.00 6.13
477 478 3.225104 TCAGATATACGTTAAGGCCGGT 58.775 45.455 1.90 0.00 0.00 5.28
478 479 3.254166 TCAGATATACGTTAAGGCCGGTC 59.746 47.826 0.00 0.00 0.00 4.79
479 480 3.005050 CAGATATACGTTAAGGCCGGTCA 59.995 47.826 9.71 0.00 0.00 4.02
480 481 2.869233 TATACGTTAAGGCCGGTCAC 57.131 50.000 9.71 0.00 0.00 3.67
481 482 0.179129 ATACGTTAAGGCCGGTCACG 60.179 55.000 15.03 15.03 40.55 4.35
482 483 2.817470 TACGTTAAGGCCGGTCACGC 62.817 60.000 16.34 0.00 39.22 5.34
483 484 3.484547 GTTAAGGCCGGTCACGCG 61.485 66.667 9.71 3.53 39.22 6.01
484 485 4.745751 TTAAGGCCGGTCACGCGG 62.746 66.667 9.71 0.00 39.22 6.46
508 509 4.626081 GTGCTGGACGTGCTGGGT 62.626 66.667 15.32 0.00 0.00 4.51
509 510 3.872603 TGCTGGACGTGCTGGGTT 61.873 61.111 15.32 0.00 0.00 4.11
510 511 2.594592 GCTGGACGTGCTGGGTTT 60.595 61.111 15.32 0.00 0.00 3.27
511 512 2.193536 GCTGGACGTGCTGGGTTTT 61.194 57.895 15.32 0.00 0.00 2.43
512 513 1.734388 GCTGGACGTGCTGGGTTTTT 61.734 55.000 15.32 0.00 0.00 1.94
513 514 0.030638 CTGGACGTGCTGGGTTTTTG 59.969 55.000 8.99 0.00 0.00 2.44
514 515 1.362355 GGACGTGCTGGGTTTTTGG 59.638 57.895 0.00 0.00 0.00 3.28
515 516 1.362355 GACGTGCTGGGTTTTTGGG 59.638 57.895 0.00 0.00 0.00 4.12
516 517 2.082629 GACGTGCTGGGTTTTTGGGG 62.083 60.000 0.00 0.00 0.00 4.96
517 518 2.866726 CGTGCTGGGTTTTTGGGGG 61.867 63.158 0.00 0.00 0.00 5.40
536 537 5.159273 GGGGGCTTTGACAAATTAAATCA 57.841 39.130 0.05 0.00 0.00 2.57
537 538 5.555966 GGGGGCTTTGACAAATTAAATCAA 58.444 37.500 0.05 0.00 0.00 2.57
538 539 6.000840 GGGGGCTTTGACAAATTAAATCAAA 58.999 36.000 0.05 9.88 39.42 2.69
539 540 6.072728 GGGGGCTTTGACAAATTAAATCAAAC 60.073 38.462 0.05 5.80 37.41 2.93
540 541 6.484977 GGGGCTTTGACAAATTAAATCAAACA 59.515 34.615 0.05 0.00 37.41 2.83
541 542 7.012799 GGGGCTTTGACAAATTAAATCAAACAA 59.987 33.333 0.05 0.00 37.41 2.83
542 543 8.401709 GGGCTTTGACAAATTAAATCAAACAAA 58.598 29.630 0.05 0.00 37.41 2.83
543 544 9.220635 GGCTTTGACAAATTAAATCAAACAAAC 57.779 29.630 0.05 0.00 37.41 2.93
544 545 9.766277 GCTTTGACAAATTAAATCAAACAAACA 57.234 25.926 0.05 0.00 37.41 2.83
581 582 4.795970 AAAATAAGATGACGCCGACATC 57.204 40.909 19.32 19.32 42.81 3.06
585 586 2.582959 GATGACGCCGACATCTCAC 58.417 57.895 19.58 0.00 40.36 3.51
586 587 0.179137 GATGACGCCGACATCTCACA 60.179 55.000 19.58 0.00 40.36 3.58
587 588 0.461548 ATGACGCCGACATCTCACAT 59.538 50.000 0.00 0.00 0.00 3.21
588 589 0.179137 TGACGCCGACATCTCACATC 60.179 55.000 0.00 0.00 0.00 3.06
589 590 0.101399 GACGCCGACATCTCACATCT 59.899 55.000 0.00 0.00 0.00 2.90
590 591 1.333931 GACGCCGACATCTCACATCTA 59.666 52.381 0.00 0.00 0.00 1.98
591 592 1.957177 ACGCCGACATCTCACATCTAT 59.043 47.619 0.00 0.00 0.00 1.98
592 593 3.146847 ACGCCGACATCTCACATCTATA 58.853 45.455 0.00 0.00 0.00 1.31
593 594 3.759086 ACGCCGACATCTCACATCTATAT 59.241 43.478 0.00 0.00 0.00 0.86
594 595 4.101235 CGCCGACATCTCACATCTATATG 58.899 47.826 0.00 0.00 39.17 1.78
596 597 5.163754 CGCCGACATCTCACATCTATATGTA 60.164 44.000 0.00 0.00 44.70 2.29
597 598 6.030849 GCCGACATCTCACATCTATATGTAC 58.969 44.000 0.00 0.00 44.70 2.90
598 599 6.127869 GCCGACATCTCACATCTATATGTACT 60.128 42.308 0.00 0.00 44.70 2.73
599 600 7.575909 GCCGACATCTCACATCTATATGTACTT 60.576 40.741 0.00 0.00 44.70 2.24
600 601 8.300286 CCGACATCTCACATCTATATGTACTTT 58.700 37.037 0.00 0.00 44.70 2.66
601 602 9.684448 CGACATCTCACATCTATATGTACTTTT 57.316 33.333 0.00 0.00 44.70 2.27
603 604 9.988815 ACATCTCACATCTATATGTACTTTTCC 57.011 33.333 0.00 0.00 44.70 3.13
604 605 9.133627 CATCTCACATCTATATGTACTTTTCCG 57.866 37.037 0.00 0.00 44.70 4.30
605 606 8.234136 TCTCACATCTATATGTACTTTTCCGT 57.766 34.615 0.00 0.00 44.70 4.69
606 607 8.350722 TCTCACATCTATATGTACTTTTCCGTC 58.649 37.037 0.00 0.00 44.70 4.79
607 608 8.234136 TCACATCTATATGTACTTTTCCGTCT 57.766 34.615 0.00 0.00 44.70 4.18
608 609 8.692710 TCACATCTATATGTACTTTTCCGTCTT 58.307 33.333 0.00 0.00 44.70 3.01
609 610 9.961265 CACATCTATATGTACTTTTCCGTCTTA 57.039 33.333 0.00 0.00 44.70 2.10
652 653 9.731819 TTTGTCTAAATACAGATGTATCGAGTC 57.268 33.333 5.97 5.55 40.10 3.36
653 654 8.446599 TGTCTAAATACAGATGTATCGAGTCA 57.553 34.615 5.97 7.58 40.10 3.41
654 655 9.067986 TGTCTAAATACAGATGTATCGAGTCAT 57.932 33.333 5.97 5.06 40.10 3.06
655 656 9.900710 GTCTAAATACAGATGTATCGAGTCATT 57.099 33.333 5.97 0.00 40.10 2.57
701 702 8.074474 CGTATCTAGACGAATCTAAGACAAGA 57.926 38.462 0.00 0.00 45.82 3.02
702 703 8.549548 CGTATCTAGACGAATCTAAGACAAGAA 58.450 37.037 0.00 0.00 45.82 2.52
708 709 8.833231 AGACGAATCTAAGACAAGAATTTTGA 57.167 30.769 0.00 0.00 31.46 2.69
709 710 9.273016 AGACGAATCTAAGACAAGAATTTTGAA 57.727 29.630 0.00 0.00 31.46 2.69
710 711 9.878599 GACGAATCTAAGACAAGAATTTTGAAA 57.121 29.630 0.00 0.00 0.00 2.69
711 712 9.665264 ACGAATCTAAGACAAGAATTTTGAAAC 57.335 29.630 0.00 0.00 0.00 2.78
712 713 8.831372 CGAATCTAAGACAAGAATTTTGAAACG 58.169 33.333 7.18 0.00 0.00 3.60
713 714 8.507470 AATCTAAGACAAGAATTTTGAAACGC 57.493 30.769 7.18 0.00 0.00 4.84
714 715 7.022055 TCTAAGACAAGAATTTTGAAACGCA 57.978 32.000 7.18 0.00 0.00 5.24
715 716 7.132213 TCTAAGACAAGAATTTTGAAACGCAG 58.868 34.615 7.18 0.00 0.00 5.18
716 717 4.610945 AGACAAGAATTTTGAAACGCAGG 58.389 39.130 7.18 0.00 0.00 4.85
717 718 3.716601 ACAAGAATTTTGAAACGCAGGG 58.283 40.909 7.18 0.00 0.00 4.45
718 719 3.383185 ACAAGAATTTTGAAACGCAGGGA 59.617 39.130 7.18 0.00 0.00 4.20
719 720 3.923017 AGAATTTTGAAACGCAGGGAG 57.077 42.857 0.00 0.00 0.00 4.30
720 721 3.222603 AGAATTTTGAAACGCAGGGAGT 58.777 40.909 0.00 0.00 0.00 3.85
721 722 4.394729 AGAATTTTGAAACGCAGGGAGTA 58.605 39.130 0.00 0.00 0.00 2.59
722 723 4.825085 AGAATTTTGAAACGCAGGGAGTAA 59.175 37.500 0.00 0.00 0.00 2.24
723 724 5.476945 AGAATTTTGAAACGCAGGGAGTAAT 59.523 36.000 0.00 0.00 0.00 1.89
724 725 6.657541 AGAATTTTGAAACGCAGGGAGTAATA 59.342 34.615 0.00 0.00 0.00 0.98
725 726 7.339466 AGAATTTTGAAACGCAGGGAGTAATAT 59.661 33.333 0.00 0.00 0.00 1.28
726 727 8.514330 AATTTTGAAACGCAGGGAGTAATATA 57.486 30.769 0.00 0.00 0.00 0.86
727 728 7.548196 TTTTGAAACGCAGGGAGTAATATAG 57.452 36.000 0.00 0.00 0.00 1.31
728 729 6.474140 TTGAAACGCAGGGAGTAATATAGA 57.526 37.500 0.00 0.00 0.00 1.98
729 730 5.839621 TGAAACGCAGGGAGTAATATAGAC 58.160 41.667 0.00 0.00 0.00 2.59
730 731 4.500603 AACGCAGGGAGTAATATAGACG 57.499 45.455 0.00 0.00 0.00 4.18
731 732 2.818432 ACGCAGGGAGTAATATAGACGG 59.182 50.000 0.00 0.00 0.00 4.79
732 733 3.079578 CGCAGGGAGTAATATAGACGGA 58.920 50.000 0.00 0.00 0.00 4.69
733 734 3.695060 CGCAGGGAGTAATATAGACGGAT 59.305 47.826 0.00 0.00 0.00 4.18
734 735 4.201930 CGCAGGGAGTAATATAGACGGATC 60.202 50.000 0.00 0.00 0.00 3.36
735 736 4.098196 GCAGGGAGTAATATAGACGGATCC 59.902 50.000 0.00 0.00 0.00 3.36
736 737 5.511363 CAGGGAGTAATATAGACGGATCCT 58.489 45.833 10.75 0.00 0.00 3.24
737 738 5.952947 CAGGGAGTAATATAGACGGATCCTT 59.047 44.000 10.75 0.00 0.00 3.36
738 739 6.437793 CAGGGAGTAATATAGACGGATCCTTT 59.562 42.308 10.75 0.00 0.00 3.11
739 740 7.017531 AGGGAGTAATATAGACGGATCCTTTT 58.982 38.462 10.75 0.00 0.00 2.27
740 741 8.175431 AGGGAGTAATATAGACGGATCCTTTTA 58.825 37.037 10.75 0.00 0.00 1.52
741 742 8.810041 GGGAGTAATATAGACGGATCCTTTTAA 58.190 37.037 10.75 0.00 0.00 1.52
750 751 7.703058 AGACGGATCCTTTTAAAAATCATGT 57.297 32.000 10.75 10.30 0.00 3.21
751 752 7.762382 AGACGGATCCTTTTAAAAATCATGTC 58.238 34.615 10.75 18.31 0.00 3.06
752 753 7.611855 AGACGGATCCTTTTAAAAATCATGTCT 59.388 33.333 20.51 20.51 33.88 3.41
753 754 8.801882 ACGGATCCTTTTAAAAATCATGTCTA 57.198 30.769 10.75 0.00 0.00 2.59
754 755 9.408648 ACGGATCCTTTTAAAAATCATGTCTAT 57.591 29.630 10.75 0.00 0.00 1.98
755 756 9.884465 CGGATCCTTTTAAAAATCATGTCTATC 57.116 33.333 10.75 2.73 0.00 2.08
759 760 9.753674 TCCTTTTAAAAATCATGTCTATCCTGT 57.246 29.630 1.66 0.00 0.00 4.00
772 773 7.395190 TGTCTATCCTGTTACTAAACGCTAA 57.605 36.000 0.00 0.00 38.53 3.09
781 782 5.127519 TGTTACTAAACGCTAATAGAGGGCA 59.872 40.000 0.00 0.00 41.86 5.36
783 784 2.622064 AAACGCTAATAGAGGGCAGG 57.378 50.000 0.00 0.00 41.86 4.85
801 802 4.452114 GGCAGGTGCTTTCCTTTTAAATTG 59.548 41.667 1.26 0.00 41.70 2.32
1092 1098 3.193469 TTAAACCCTCGCCGGCCAA 62.193 57.895 23.46 8.65 0.00 4.52
1106 1112 1.746991 GCCAAGAAGAAGCCTCCGG 60.747 63.158 0.00 0.00 0.00 5.14
1153 1165 4.180946 CGCGACCTGGAGGAGACG 62.181 72.222 0.00 3.86 38.94 4.18
1156 1168 2.115911 CGACCTGGAGGAGACGGAG 61.116 68.421 0.00 0.00 38.94 4.63
1444 1459 1.566018 GGTTCTTCTTCGTGTGCCGG 61.566 60.000 0.00 0.00 37.11 6.13
1666 1681 0.692476 ACATGGTGGTCTGCAAGCTA 59.308 50.000 0.00 0.00 0.00 3.32
1670 1685 1.905894 TGGTGGTCTGCAAGCTATACA 59.094 47.619 0.00 0.00 0.00 2.29
2057 2072 2.304401 CGCCGCGTGTTCTTGTACA 61.304 57.895 4.92 0.00 0.00 2.90
2123 2138 1.481871 GATGGAGGAGTACGGGTTCA 58.518 55.000 0.00 0.00 0.00 3.18
2125 2140 0.406750 TGGAGGAGTACGGGTTCAGA 59.593 55.000 0.00 0.00 0.00 3.27
2236 2251 1.756408 TTGGTCACCGGCGGTAGAAA 61.756 55.000 33.65 20.03 32.11 2.52
2237 2252 1.004679 GGTCACCGGCGGTAGAAAA 60.005 57.895 33.65 12.11 32.11 2.29
2249 2264 2.157085 CGGTAGAAAACGCTTCCTTCAC 59.843 50.000 0.00 0.00 0.00 3.18
2252 2267 2.222027 AGAAAACGCTTCCTTCACCAG 58.778 47.619 0.00 0.00 0.00 4.00
2301 2316 5.164041 GCACGACTTAGACTGAAACTGAATC 60.164 44.000 0.00 0.00 0.00 2.52
2304 2319 6.433404 ACGACTTAGACTGAAACTGAATCCTA 59.567 38.462 0.00 0.00 0.00 2.94
2318 2333 5.655532 ACTGAATCCTACCTTAAGCGTCTAA 59.344 40.000 0.00 0.00 0.00 2.10
2334 2349 3.674682 CGTCTAAGGTTCTCTTCCAGCAG 60.675 52.174 0.00 0.00 36.93 4.24
2353 2368 3.019564 CAGGGGAAGCAATAAAGAGTGG 58.980 50.000 0.00 0.00 0.00 4.00
2404 2419 5.532406 AGTCATTTGGGGTTTGATGATATCG 59.468 40.000 0.00 0.00 31.85 2.92
2407 2422 1.156736 GGGGTTTGATGATATCGCCG 58.843 55.000 0.00 0.00 0.00 6.46
2409 2424 1.798813 GGGTTTGATGATATCGCCGAC 59.201 52.381 0.00 0.00 0.00 4.79
2418 2433 6.162777 TGATGATATCGCCGACATAATTTGA 58.837 36.000 0.00 0.00 0.00 2.69
2427 2442 7.136119 TCGCCGACATAATTTGATTTATTTCC 58.864 34.615 0.00 0.00 0.00 3.13
2430 2445 9.092876 GCCGACATAATTTGATTTATTTCCAAA 57.907 29.630 0.00 0.00 34.76 3.28
2441 2456 9.829507 TTGATTTATTTCCAAACACAAAGACAT 57.170 25.926 0.00 0.00 0.00 3.06
2448 2463 9.883142 ATTTCCAAACACAAAGACATTTAGAAA 57.117 25.926 0.00 0.00 0.00 2.52
2485 2520 1.892474 GCCCTGAACTTGCCAAACATA 59.108 47.619 0.00 0.00 0.00 2.29
2486 2521 2.497273 GCCCTGAACTTGCCAAACATAT 59.503 45.455 0.00 0.00 0.00 1.78
2493 2528 6.007076 TGAACTTGCCAAACATATCCAACTA 58.993 36.000 0.00 0.00 0.00 2.24
2582 2617 3.133691 CAAACAGAGCTAAGCAGTGACA 58.866 45.455 0.00 0.00 0.00 3.58
2603 2638 2.037381 AGTGGTCTTCGAAGAAGAACCC 59.963 50.000 28.58 23.51 45.90 4.11
2621 2656 2.733945 GAGATCGCTCCAGCCTCC 59.266 66.667 0.00 0.00 37.91 4.30
2937 2974 6.353323 TCGCCTTCATAAAAGATAACATGGA 58.647 36.000 0.00 0.00 0.00 3.41
2997 3034 2.353357 TCCCAATGCAGAGCCAATAG 57.647 50.000 0.00 0.00 0.00 1.73
3061 3125 1.532007 AGCGTAGATGAGTAGTAGCGC 59.468 52.381 0.00 0.00 43.29 5.92
3129 3199 9.938280 ATAGCATGTAAACACTAAAGAGTAACA 57.062 29.630 0.00 0.00 33.32 2.41
3139 3209 6.651225 ACACTAAAGAGTAACAAATCTGAGGC 59.349 38.462 0.00 0.00 33.32 4.70
3154 3224 1.339291 TGAGGCTCTGATGATAGCACG 59.661 52.381 16.72 0.00 40.61 5.34
3161 3231 4.620609 GCTCTGATGATAGCACGTAGATTG 59.379 45.833 0.00 0.00 38.63 2.67
3183 3253 5.368145 TGCATAGTGATTCATAGTTGGGTC 58.632 41.667 0.00 0.00 0.00 4.46
3259 3329 9.793252 CTTTATTGTCTAACCAATCATCAAAGG 57.207 33.333 0.00 0.00 36.48 3.11
3263 3333 5.014123 TGTCTAACCAATCATCAAAGGTCCT 59.986 40.000 0.00 0.00 32.05 3.85
3282 3352 6.098124 AGGTCCTAAGAGATTTGAGATCACAG 59.902 42.308 0.00 0.00 0.00 3.66
3283 3353 5.752955 GTCCTAAGAGATTTGAGATCACAGC 59.247 44.000 0.00 0.00 0.00 4.40
3310 3380 6.758886 ACATCATTACTTAGTGAGCTTACTGC 59.241 38.462 20.67 0.00 43.29 4.40
3332 3402 8.850156 ACTGCTTAGTTACAAAATCATTGTTCT 58.150 29.630 0.00 2.52 34.11 3.01
3346 3416 4.218200 TCATTGTTCTACAAATGGTGCTGG 59.782 41.667 0.00 0.00 41.96 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.753262 CGTGACCTTATCCCCTCCTG 59.247 60.000 0.00 0.00 0.00 3.86
1 2 1.049289 GCGTGACCTTATCCCCTCCT 61.049 60.000 0.00 0.00 0.00 3.69
2 3 1.446366 GCGTGACCTTATCCCCTCC 59.554 63.158 0.00 0.00 0.00 4.30
3 4 1.067582 CGCGTGACCTTATCCCCTC 59.932 63.158 0.00 0.00 0.00 4.30
4 5 1.380785 TCGCGTGACCTTATCCCCT 60.381 57.895 5.77 0.00 0.00 4.79
5 6 1.067582 CTCGCGTGACCTTATCCCC 59.932 63.158 5.77 0.00 0.00 4.81
6 7 1.067582 CCTCGCGTGACCTTATCCC 59.932 63.158 10.21 0.00 0.00 3.85
7 8 1.067582 CCCTCGCGTGACCTTATCC 59.932 63.158 10.21 0.00 0.00 2.59
8 9 0.458669 TTCCCTCGCGTGACCTTATC 59.541 55.000 10.21 0.00 0.00 1.75
9 10 0.460311 CTTCCCTCGCGTGACCTTAT 59.540 55.000 10.21 0.00 0.00 1.73
10 11 1.601419 CCTTCCCTCGCGTGACCTTA 61.601 60.000 10.21 0.00 0.00 2.69
11 12 2.657237 CTTCCCTCGCGTGACCTT 59.343 61.111 10.21 0.00 0.00 3.50
12 13 3.382832 CCTTCCCTCGCGTGACCT 61.383 66.667 10.21 0.00 0.00 3.85
13 14 3.358076 CTCCTTCCCTCGCGTGACC 62.358 68.421 10.21 0.00 0.00 4.02
14 15 2.182030 CTCCTTCCCTCGCGTGAC 59.818 66.667 10.21 0.00 0.00 3.67
15 16 3.760035 GCTCCTTCCCTCGCGTGA 61.760 66.667 10.21 0.00 0.00 4.35
16 17 4.821589 GGCTCCTTCCCTCGCGTG 62.822 72.222 5.77 2.75 0.00 5.34
19 20 4.214327 CTCGGCTCCTTCCCTCGC 62.214 72.222 0.00 0.00 0.00 5.03
20 21 4.214327 GCTCGGCTCCTTCCCTCG 62.214 72.222 0.00 0.00 0.00 4.63
21 22 4.214327 CGCTCGGCTCCTTCCCTC 62.214 72.222 0.00 0.00 0.00 4.30
22 23 4.761058 TCGCTCGGCTCCTTCCCT 62.761 66.667 0.00 0.00 0.00 4.20
23 24 4.214327 CTCGCTCGGCTCCTTCCC 62.214 72.222 0.00 0.00 0.00 3.97
24 25 4.882396 GCTCGCTCGGCTCCTTCC 62.882 72.222 0.00 0.00 0.00 3.46
42 43 3.403558 GACAGGGTCCCAGGCCTC 61.404 72.222 11.55 0.00 0.00 4.70
45 46 4.083862 GACGACAGGGTCCCAGGC 62.084 72.222 11.55 2.55 0.00 4.85
51 52 0.612453 AGAAGGAGGACGACAGGGTC 60.612 60.000 0.00 0.00 36.18 4.46
52 53 0.900647 CAGAAGGAGGACGACAGGGT 60.901 60.000 0.00 0.00 0.00 4.34
53 54 1.608717 CCAGAAGGAGGACGACAGGG 61.609 65.000 0.00 0.00 36.89 4.45
54 55 0.612174 TCCAGAAGGAGGACGACAGG 60.612 60.000 0.00 0.00 39.61 4.00
55 56 0.528470 GTCCAGAAGGAGGACGACAG 59.472 60.000 0.00 0.00 46.92 3.51
56 57 2.654802 GTCCAGAAGGAGGACGACA 58.345 57.895 0.00 0.00 46.92 4.35
62 63 0.382515 GACGATCGTCCAGAAGGAGG 59.617 60.000 33.06 0.00 46.92 4.30
63 64 3.928343 GACGATCGTCCAGAAGGAG 57.072 57.895 33.06 0.00 46.92 3.69
82 83 3.197790 CCAATCGTCCAGCCGCAG 61.198 66.667 0.00 0.00 0.00 5.18
83 84 4.776322 CCCAATCGTCCAGCCGCA 62.776 66.667 0.00 0.00 0.00 5.69
87 88 4.115199 AGGGCCCAATCGTCCAGC 62.115 66.667 27.56 0.00 0.00 4.85
88 89 2.124570 CAGGGCCCAATCGTCCAG 60.125 66.667 27.56 0.00 0.00 3.86
89 90 2.933287 ACAGGGCCCAATCGTCCA 60.933 61.111 27.56 0.00 0.00 4.02
90 91 2.124695 GACAGGGCCCAATCGTCC 60.125 66.667 27.56 6.03 0.00 4.79
91 92 2.511600 CGACAGGGCCCAATCGTC 60.512 66.667 30.13 24.42 0.00 4.20
92 93 3.319198 ACGACAGGGCCCAATCGT 61.319 61.111 35.31 35.31 42.66 3.73
93 94 2.511600 GACGACAGGGCCCAATCG 60.512 66.667 34.19 34.19 40.39 3.34
94 95 1.450312 CAGACGACAGGGCCCAATC 60.450 63.158 27.56 19.82 0.00 2.67
95 96 2.671070 CAGACGACAGGGCCCAAT 59.329 61.111 27.56 11.90 0.00 3.16
96 97 3.636231 CCAGACGACAGGGCCCAA 61.636 66.667 27.56 0.00 0.00 4.12
101 102 3.775654 GAGGCCCAGACGACAGGG 61.776 72.222 10.94 10.94 44.39 4.45
102 103 2.997315 TGAGGCCCAGACGACAGG 60.997 66.667 0.00 0.00 0.00 4.00
103 104 2.575993 CTGAGGCCCAGACGACAG 59.424 66.667 14.21 3.15 45.78 3.51
104 105 3.695606 GCTGAGGCCCAGACGACA 61.696 66.667 21.37 1.86 45.78 4.35
129 130 4.664677 ACTCGTCTGTGCACGGCC 62.665 66.667 21.33 9.00 40.35 6.13
130 131 3.406361 CACTCGTCTGTGCACGGC 61.406 66.667 21.33 14.48 40.35 5.68
131 132 2.693250 TTCCACTCGTCTGTGCACGG 62.693 60.000 20.12 20.12 40.35 4.94
132 133 1.278172 CTTCCACTCGTCTGTGCACG 61.278 60.000 13.13 7.36 41.36 5.34
133 134 1.560860 GCTTCCACTCGTCTGTGCAC 61.561 60.000 10.75 10.75 36.68 4.57
134 135 1.300931 GCTTCCACTCGTCTGTGCA 60.301 57.895 0.00 0.00 36.68 4.57
135 136 2.375766 CGCTTCCACTCGTCTGTGC 61.376 63.158 0.00 0.00 36.68 4.57
136 137 2.375766 GCGCTTCCACTCGTCTGTG 61.376 63.158 0.00 0.00 37.66 3.66
137 138 2.049063 GCGCTTCCACTCGTCTGT 60.049 61.111 0.00 0.00 0.00 3.41
138 139 2.091112 CAGCGCTTCCACTCGTCTG 61.091 63.158 7.50 0.00 0.00 3.51
139 140 2.259818 CAGCGCTTCCACTCGTCT 59.740 61.111 7.50 0.00 0.00 4.18
140 141 3.482783 GCAGCGCTTCCACTCGTC 61.483 66.667 7.50 0.00 0.00 4.20
143 144 3.482783 GTCGCAGCGCTTCCACTC 61.483 66.667 7.50 0.00 0.00 3.51
157 158 4.524318 ATTAGCCCGGCCACGTCG 62.524 66.667 5.55 0.00 38.78 5.12
158 159 2.588034 GATTAGCCCGGCCACGTC 60.588 66.667 5.55 0.00 38.78 4.34
159 160 4.524318 CGATTAGCCCGGCCACGT 62.524 66.667 5.55 0.00 38.78 4.49
160 161 4.524318 ACGATTAGCCCGGCCACG 62.524 66.667 5.55 9.45 40.55 4.94
161 162 2.588034 GACGATTAGCCCGGCCAC 60.588 66.667 5.55 0.00 0.00 5.01
162 163 4.215742 CGACGATTAGCCCGGCCA 62.216 66.667 5.55 0.00 0.00 5.36
163 164 3.908081 TCGACGATTAGCCCGGCC 61.908 66.667 5.55 0.00 0.00 6.13
164 165 2.657620 GTCGACGATTAGCCCGGC 60.658 66.667 0.00 0.00 0.00 6.13
165 166 2.027169 GGTCGACGATTAGCCCGG 59.973 66.667 9.92 0.00 0.00 5.73
178 179 3.740397 TACTCCACGTGGCGGTCG 61.740 66.667 30.25 16.24 34.44 4.79
179 180 2.126189 GTACTCCACGTGGCGGTC 60.126 66.667 30.25 16.47 34.44 4.79
180 181 4.047059 CGTACTCCACGTGGCGGT 62.047 66.667 30.25 28.33 45.82 5.68
189 190 3.000819 CAGGTGGCCCGTACTCCA 61.001 66.667 0.00 0.00 35.12 3.86
190 191 3.001406 ACAGGTGGCCCGTACTCC 61.001 66.667 0.00 0.00 35.12 3.85
191 192 2.577593 GACAGGTGGCCCGTACTC 59.422 66.667 0.00 0.00 35.12 2.59
192 193 3.379445 CGACAGGTGGCCCGTACT 61.379 66.667 0.00 0.00 35.12 2.73
193 194 3.637926 GACGACAGGTGGCCCGTAC 62.638 68.421 0.00 0.00 35.22 3.67
194 195 3.376078 GACGACAGGTGGCCCGTA 61.376 66.667 0.00 0.00 35.22 4.02
197 198 4.736896 GACGACGACAGGTGGCCC 62.737 72.222 0.00 0.00 0.00 5.80
198 199 4.736896 GGACGACGACAGGTGGCC 62.737 72.222 0.00 0.00 0.00 5.36
199 200 1.664321 ATAGGACGACGACAGGTGGC 61.664 60.000 0.00 0.00 0.00 5.01
200 201 1.602851 CTATAGGACGACGACAGGTGG 59.397 57.143 0.00 0.00 0.00 4.61
201 202 1.602851 CCTATAGGACGACGACAGGTG 59.397 57.143 14.11 0.00 37.39 4.00
202 203 1.964552 CCTATAGGACGACGACAGGT 58.035 55.000 14.11 0.00 37.39 4.00
203 204 0.592148 GCCTATAGGACGACGACAGG 59.408 60.000 23.61 0.00 37.39 4.00
204 205 0.592148 GGCCTATAGGACGACGACAG 59.408 60.000 23.61 0.00 37.39 3.51
205 206 2.711711 GGCCTATAGGACGACGACA 58.288 57.895 23.61 0.00 37.39 4.35
224 225 0.736053 CTGGACGACTGAGGCTAGTC 59.264 60.000 11.69 11.69 42.83 2.59
225 226 1.316706 GCTGGACGACTGAGGCTAGT 61.317 60.000 0.00 0.00 0.00 2.57
226 227 1.315981 TGCTGGACGACTGAGGCTAG 61.316 60.000 0.00 0.00 0.00 3.42
227 228 1.304134 TGCTGGACGACTGAGGCTA 60.304 57.895 0.00 0.00 0.00 3.93
228 229 2.601666 TGCTGGACGACTGAGGCT 60.602 61.111 0.00 0.00 0.00 4.58
229 230 1.595993 TACTGCTGGACGACTGAGGC 61.596 60.000 0.00 0.00 0.00 4.70
230 231 0.453793 CTACTGCTGGACGACTGAGG 59.546 60.000 0.00 0.00 0.00 3.86
231 232 0.453793 CCTACTGCTGGACGACTGAG 59.546 60.000 0.00 0.00 0.00 3.35
232 233 0.037734 TCCTACTGCTGGACGACTGA 59.962 55.000 0.00 0.00 0.00 3.41
233 234 0.171455 GTCCTACTGCTGGACGACTG 59.829 60.000 0.00 0.00 43.55 3.51
234 235 2.569183 GTCCTACTGCTGGACGACT 58.431 57.895 0.00 0.00 43.55 4.18
239 240 1.478837 CCCTATCGTCCTACTGCTGGA 60.479 57.143 0.00 0.00 0.00 3.86
240 241 0.962489 CCCTATCGTCCTACTGCTGG 59.038 60.000 0.00 0.00 0.00 4.85
241 242 1.693627 ACCCTATCGTCCTACTGCTG 58.306 55.000 0.00 0.00 0.00 4.41
242 243 2.308690 GAACCCTATCGTCCTACTGCT 58.691 52.381 0.00 0.00 0.00 4.24
243 244 2.029623 TGAACCCTATCGTCCTACTGC 58.970 52.381 0.00 0.00 0.00 4.40
244 245 4.556898 CGATTGAACCCTATCGTCCTACTG 60.557 50.000 0.00 0.00 41.05 2.74
245 246 3.568853 CGATTGAACCCTATCGTCCTACT 59.431 47.826 0.00 0.00 41.05 2.57
246 247 3.898529 CGATTGAACCCTATCGTCCTAC 58.101 50.000 0.00 0.00 41.05 3.18
253 254 2.698797 TGGAGGACGATTGAACCCTATC 59.301 50.000 0.00 0.00 0.00 2.08
254 255 2.700897 CTGGAGGACGATTGAACCCTAT 59.299 50.000 0.00 0.00 0.00 2.57
255 256 2.108168 CTGGAGGACGATTGAACCCTA 58.892 52.381 0.00 0.00 0.00 3.53
256 257 0.905357 CTGGAGGACGATTGAACCCT 59.095 55.000 0.00 0.00 0.00 4.34
257 258 0.744771 GCTGGAGGACGATTGAACCC 60.745 60.000 0.00 0.00 0.00 4.11
258 259 0.250513 AGCTGGAGGACGATTGAACC 59.749 55.000 0.00 0.00 0.00 3.62
259 260 1.363744 CAGCTGGAGGACGATTGAAC 58.636 55.000 5.57 0.00 0.00 3.18
260 261 0.250234 CCAGCTGGAGGACGATTGAA 59.750 55.000 29.88 0.00 37.39 2.69
261 262 0.614697 TCCAGCTGGAGGACGATTGA 60.615 55.000 32.00 5.23 39.78 2.57
262 263 0.460987 GTCCAGCTGGAGGACGATTG 60.461 60.000 35.92 4.17 46.49 2.67
263 264 1.901085 GTCCAGCTGGAGGACGATT 59.099 57.895 35.92 0.00 46.49 3.34
264 265 3.622514 GTCCAGCTGGAGGACGAT 58.377 61.111 35.92 0.00 46.49 3.73
269 270 4.154347 GCCTCGTCCAGCTGGAGG 62.154 72.222 38.30 38.30 46.49 4.30
270 271 4.154347 GGCCTCGTCCAGCTGGAG 62.154 72.222 35.92 26.67 46.49 3.86
281 282 7.749539 ATTTTTCAAAAATAATACGGCCTCG 57.250 32.000 6.29 0.00 43.02 4.63
365 366 1.876156 GTGCTGGATGTAGCTTATGGC 59.124 52.381 0.00 0.00 44.01 4.40
366 367 2.138320 CGTGCTGGATGTAGCTTATGG 58.862 52.381 0.00 0.00 44.01 2.74
367 368 2.138320 CCGTGCTGGATGTAGCTTATG 58.862 52.381 0.00 0.00 44.01 1.90
368 369 1.541233 GCCGTGCTGGATGTAGCTTAT 60.541 52.381 0.00 0.00 44.01 1.73
369 370 0.179084 GCCGTGCTGGATGTAGCTTA 60.179 55.000 0.00 0.00 44.01 3.09
370 371 1.450312 GCCGTGCTGGATGTAGCTT 60.450 57.895 0.00 0.00 44.01 3.74
371 372 1.976132 ATGCCGTGCTGGATGTAGCT 61.976 55.000 0.00 0.00 44.01 3.32
372 373 1.502163 GATGCCGTGCTGGATGTAGC 61.502 60.000 0.00 0.00 42.00 3.58
373 374 1.217585 CGATGCCGTGCTGGATGTAG 61.218 60.000 0.00 0.00 42.00 2.74
374 375 1.227234 CGATGCCGTGCTGGATGTA 60.227 57.895 0.00 0.00 42.00 2.29
375 376 2.512286 CGATGCCGTGCTGGATGT 60.512 61.111 0.00 0.00 42.00 3.06
376 377 3.945434 GCGATGCCGTGCTGGATG 61.945 66.667 0.00 0.00 42.00 3.51
380 381 4.505217 GTTCGCGATGCCGTGCTG 62.505 66.667 10.88 0.00 45.14 4.41
383 384 3.680072 GAACGTTCGCGATGCCGTG 62.680 63.158 23.42 8.48 46.73 4.94
384 385 3.475774 GAACGTTCGCGATGCCGT 61.476 61.111 10.88 16.22 44.71 5.68
385 386 2.665326 GATGAACGTTCGCGATGCCG 62.665 60.000 22.48 15.52 44.71 5.69
386 387 1.012234 GATGAACGTTCGCGATGCC 60.012 57.895 22.48 0.00 44.71 4.40
387 388 1.012234 GGATGAACGTTCGCGATGC 60.012 57.895 22.48 12.50 44.71 3.91
388 389 1.636340 GGGATGAACGTTCGCGATG 59.364 57.895 22.48 8.69 44.71 3.84
389 390 1.520787 GGGGATGAACGTTCGCGAT 60.521 57.895 22.48 11.26 44.71 4.58
390 391 2.125832 GGGGATGAACGTTCGCGA 60.126 61.111 22.48 3.71 44.71 5.87
392 393 1.087771 AATCGGGGATGAACGTTCGC 61.088 55.000 22.48 16.50 0.00 4.70
393 394 0.928229 GAATCGGGGATGAACGTTCG 59.072 55.000 22.48 10.85 0.00 3.95
394 395 1.933853 CTGAATCGGGGATGAACGTTC 59.066 52.381 21.42 21.42 0.00 3.95
395 396 2.012051 GCTGAATCGGGGATGAACGTT 61.012 52.381 0.00 0.00 0.00 3.99
396 397 0.462047 GCTGAATCGGGGATGAACGT 60.462 55.000 0.00 0.00 0.00 3.99
397 398 0.461870 TGCTGAATCGGGGATGAACG 60.462 55.000 0.00 0.00 0.00 3.95
398 399 1.401905 GTTGCTGAATCGGGGATGAAC 59.598 52.381 0.00 0.00 0.00 3.18
399 400 1.750193 GTTGCTGAATCGGGGATGAA 58.250 50.000 0.00 0.00 0.00 2.57
400 401 0.461870 CGTTGCTGAATCGGGGATGA 60.462 55.000 0.00 0.00 0.00 2.92
401 402 2.016961 CGTTGCTGAATCGGGGATG 58.983 57.895 0.00 0.00 0.00 3.51
402 403 1.819632 GCGTTGCTGAATCGGGGAT 60.820 57.895 0.00 0.00 0.00 3.85
403 404 2.435938 GCGTTGCTGAATCGGGGA 60.436 61.111 0.00 0.00 0.00 4.81
404 405 3.508840 GGCGTTGCTGAATCGGGG 61.509 66.667 0.00 0.00 0.00 5.73
405 406 3.864686 CGGCGTTGCTGAATCGGG 61.865 66.667 0.00 0.00 37.02 5.14
406 407 4.520846 GCGGCGTTGCTGAATCGG 62.521 66.667 9.37 0.00 37.02 4.18
407 408 3.787676 TGCGGCGTTGCTGAATCG 61.788 61.111 9.37 0.00 37.02 3.34
408 409 2.202349 GTGCGGCGTTGCTGAATC 60.202 61.111 9.37 0.00 37.02 2.52
409 410 3.737172 GGTGCGGCGTTGCTGAAT 61.737 61.111 9.37 0.00 37.02 2.57
412 413 4.041917 AATGGTGCGGCGTTGCTG 62.042 61.111 9.37 0.00 38.08 4.41
413 414 4.041917 CAATGGTGCGGCGTTGCT 62.042 61.111 9.37 0.00 35.36 3.91
436 437 1.086067 TCGCTAGCTCTGCACAATGC 61.086 55.000 13.93 0.00 45.29 3.56
437 438 1.526041 GATCGCTAGCTCTGCACAATG 59.474 52.381 13.93 0.00 0.00 2.82
438 439 1.137675 TGATCGCTAGCTCTGCACAAT 59.862 47.619 13.93 2.73 0.00 2.71
439 440 0.532115 TGATCGCTAGCTCTGCACAA 59.468 50.000 13.93 0.00 0.00 3.33
440 441 0.101939 CTGATCGCTAGCTCTGCACA 59.898 55.000 13.93 3.80 0.00 4.57
441 442 0.383590 TCTGATCGCTAGCTCTGCAC 59.616 55.000 13.93 0.00 0.00 4.57
442 443 1.326328 ATCTGATCGCTAGCTCTGCA 58.674 50.000 13.93 4.83 0.00 4.41
443 444 3.781079 ATATCTGATCGCTAGCTCTGC 57.219 47.619 13.93 0.00 0.00 4.26
444 445 4.331443 ACGTATATCTGATCGCTAGCTCTG 59.669 45.833 13.93 8.69 0.00 3.35
445 446 4.509616 ACGTATATCTGATCGCTAGCTCT 58.490 43.478 13.93 0.00 0.00 4.09
446 447 4.868450 ACGTATATCTGATCGCTAGCTC 57.132 45.455 13.93 5.01 0.00 4.09
447 448 6.183360 CCTTAACGTATATCTGATCGCTAGCT 60.183 42.308 13.93 0.00 0.00 3.32
448 449 5.966503 CCTTAACGTATATCTGATCGCTAGC 59.033 44.000 4.06 4.06 0.00 3.42
449 450 5.966503 GCCTTAACGTATATCTGATCGCTAG 59.033 44.000 0.00 0.00 0.00 3.42
450 451 5.163683 GGCCTTAACGTATATCTGATCGCTA 60.164 44.000 0.00 0.00 0.00 4.26
451 452 4.380655 GGCCTTAACGTATATCTGATCGCT 60.381 45.833 0.00 0.00 0.00 4.93
452 453 3.858238 GGCCTTAACGTATATCTGATCGC 59.142 47.826 0.00 0.00 0.00 4.58
453 454 4.096311 CGGCCTTAACGTATATCTGATCG 58.904 47.826 0.00 0.00 0.00 3.69
454 455 4.082354 ACCGGCCTTAACGTATATCTGATC 60.082 45.833 0.00 0.00 0.00 2.92
455 456 3.830755 ACCGGCCTTAACGTATATCTGAT 59.169 43.478 0.00 0.00 0.00 2.90
456 457 3.225104 ACCGGCCTTAACGTATATCTGA 58.775 45.455 0.00 0.00 0.00 3.27
457 458 3.005050 TGACCGGCCTTAACGTATATCTG 59.995 47.826 0.00 0.00 0.00 2.90
458 459 3.005155 GTGACCGGCCTTAACGTATATCT 59.995 47.826 0.00 0.00 0.00 1.98
459 460 3.311966 GTGACCGGCCTTAACGTATATC 58.688 50.000 0.00 0.00 0.00 1.63
460 461 2.287788 CGTGACCGGCCTTAACGTATAT 60.288 50.000 0.00 0.00 0.00 0.86
461 462 1.065401 CGTGACCGGCCTTAACGTATA 59.935 52.381 0.00 0.00 0.00 1.47
462 463 0.179129 CGTGACCGGCCTTAACGTAT 60.179 55.000 0.00 0.00 0.00 3.06
463 464 1.212490 CGTGACCGGCCTTAACGTA 59.788 57.895 0.00 0.00 0.00 3.57
464 465 2.048877 CGTGACCGGCCTTAACGT 60.049 61.111 0.00 0.00 0.00 3.99
465 466 3.484547 GCGTGACCGGCCTTAACG 61.485 66.667 0.00 5.96 37.32 3.18
466 467 3.484547 CGCGTGACCGGCCTTAAC 61.485 66.667 0.00 0.00 33.68 2.01
467 468 4.745751 CCGCGTGACCGGCCTTAA 62.746 66.667 4.92 0.00 42.03 1.85
491 492 4.626081 ACCCAGCACGTCCAGCAC 62.626 66.667 0.00 0.00 0.00 4.40
492 493 2.902423 AAAACCCAGCACGTCCAGCA 62.902 55.000 0.00 0.00 0.00 4.41
493 494 1.734388 AAAAACCCAGCACGTCCAGC 61.734 55.000 0.00 0.00 0.00 4.85
494 495 0.030638 CAAAAACCCAGCACGTCCAG 59.969 55.000 0.00 0.00 0.00 3.86
495 496 1.388065 CCAAAAACCCAGCACGTCCA 61.388 55.000 0.00 0.00 0.00 4.02
496 497 1.362355 CCAAAAACCCAGCACGTCC 59.638 57.895 0.00 0.00 0.00 4.79
497 498 1.362355 CCCAAAAACCCAGCACGTC 59.638 57.895 0.00 0.00 0.00 4.34
498 499 2.131067 CCCCAAAAACCCAGCACGT 61.131 57.895 0.00 0.00 0.00 4.49
499 500 2.733945 CCCCAAAAACCCAGCACG 59.266 61.111 0.00 0.00 0.00 5.34
500 501 3.147132 CCCCCAAAAACCCAGCAC 58.853 61.111 0.00 0.00 0.00 4.40
514 515 5.159273 TGATTTAATTTGTCAAAGCCCCC 57.841 39.130 4.03 0.00 0.00 5.40
515 516 6.484977 TGTTTGATTTAATTTGTCAAAGCCCC 59.515 34.615 4.03 3.71 41.09 5.80
516 517 7.489574 TGTTTGATTTAATTTGTCAAAGCCC 57.510 32.000 4.03 3.95 41.09 5.19
517 518 9.220635 GTTTGTTTGATTTAATTTGTCAAAGCC 57.779 29.630 4.03 4.43 41.09 4.35
518 519 9.766277 TGTTTGTTTGATTTAATTTGTCAAAGC 57.234 25.926 4.03 0.00 41.09 3.51
559 560 4.876107 AGATGTCGGCGTCATCTTATTTTT 59.124 37.500 33.31 17.01 46.39 1.94
560 561 4.442706 AGATGTCGGCGTCATCTTATTTT 58.557 39.130 33.31 17.60 46.39 1.82
561 562 4.060038 AGATGTCGGCGTCATCTTATTT 57.940 40.909 33.31 18.20 46.39 1.40
562 563 3.735237 AGATGTCGGCGTCATCTTATT 57.265 42.857 33.31 18.51 46.39 1.40
567 568 0.179137 TGTGAGATGTCGGCGTCATC 60.179 55.000 30.56 30.56 41.11 2.92
568 569 0.461548 ATGTGAGATGTCGGCGTCAT 59.538 50.000 18.97 18.97 33.18 3.06
569 570 0.179137 GATGTGAGATGTCGGCGTCA 60.179 55.000 12.54 9.58 33.18 4.35
570 571 0.101399 AGATGTGAGATGTCGGCGTC 59.899 55.000 6.85 0.00 0.00 5.19
571 572 1.389555 TAGATGTGAGATGTCGGCGT 58.610 50.000 6.85 0.00 0.00 5.68
572 573 2.713895 ATAGATGTGAGATGTCGGCG 57.286 50.000 0.00 0.00 0.00 6.46
573 574 5.065704 ACATATAGATGTGAGATGTCGGC 57.934 43.478 1.31 0.00 44.90 5.54
574 575 7.384439 AGTACATATAGATGTGAGATGTCGG 57.616 40.000 13.22 0.00 46.11 4.79
575 576 9.684448 AAAAGTACATATAGATGTGAGATGTCG 57.316 33.333 13.22 0.00 46.11 4.35
577 578 9.988815 GGAAAAGTACATATAGATGTGAGATGT 57.011 33.333 13.22 0.00 46.11 3.06
578 579 9.133627 CGGAAAAGTACATATAGATGTGAGATG 57.866 37.037 13.22 0.00 46.11 2.90
579 580 8.861086 ACGGAAAAGTACATATAGATGTGAGAT 58.139 33.333 13.22 0.00 46.11 2.75
580 581 8.234136 ACGGAAAAGTACATATAGATGTGAGA 57.766 34.615 13.22 0.00 46.11 3.27
581 582 8.353684 AGACGGAAAAGTACATATAGATGTGAG 58.646 37.037 13.22 0.00 46.11 3.51
582 583 8.234136 AGACGGAAAAGTACATATAGATGTGA 57.766 34.615 13.22 0.00 46.11 3.58
583 584 8.873215 AAGACGGAAAAGTACATATAGATGTG 57.127 34.615 13.22 0.00 46.11 3.21
626 627 9.731819 GACTCGATACATCTGTATTTAGACAAA 57.268 33.333 14.69 0.00 40.99 2.83
627 628 8.899771 TGACTCGATACATCTGTATTTAGACAA 58.100 33.333 14.69 3.52 40.99 3.18
628 629 8.446599 TGACTCGATACATCTGTATTTAGACA 57.553 34.615 14.69 12.64 40.99 3.41
629 630 9.900710 AATGACTCGATACATCTGTATTTAGAC 57.099 33.333 14.69 11.04 40.99 2.59
676 677 8.074474 TCTTGTCTTAGATTCGTCTAGATACG 57.926 38.462 0.00 0.00 44.19 3.06
682 683 9.923143 TCAAAATTCTTGTCTTAGATTCGTCTA 57.077 29.630 0.00 0.00 0.00 2.59
683 684 8.833231 TCAAAATTCTTGTCTTAGATTCGTCT 57.167 30.769 0.00 0.00 0.00 4.18
684 685 9.878599 TTTCAAAATTCTTGTCTTAGATTCGTC 57.121 29.630 0.00 0.00 0.00 4.20
685 686 9.665264 GTTTCAAAATTCTTGTCTTAGATTCGT 57.335 29.630 0.00 0.00 0.00 3.85
686 687 8.831372 CGTTTCAAAATTCTTGTCTTAGATTCG 58.169 33.333 0.00 0.00 0.00 3.34
687 688 8.630840 GCGTTTCAAAATTCTTGTCTTAGATTC 58.369 33.333 0.00 0.00 0.00 2.52
688 689 8.134895 TGCGTTTCAAAATTCTTGTCTTAGATT 58.865 29.630 0.00 0.00 0.00 2.40
689 690 7.648142 TGCGTTTCAAAATTCTTGTCTTAGAT 58.352 30.769 0.00 0.00 0.00 1.98
690 691 7.022055 TGCGTTTCAAAATTCTTGTCTTAGA 57.978 32.000 0.00 0.00 0.00 2.10
691 692 6.360681 CCTGCGTTTCAAAATTCTTGTCTTAG 59.639 38.462 0.00 0.00 0.00 2.18
692 693 6.205784 CCTGCGTTTCAAAATTCTTGTCTTA 58.794 36.000 0.00 0.00 0.00 2.10
693 694 5.043248 CCTGCGTTTCAAAATTCTTGTCTT 58.957 37.500 0.00 0.00 0.00 3.01
694 695 4.499696 CCCTGCGTTTCAAAATTCTTGTCT 60.500 41.667 0.00 0.00 0.00 3.41
695 696 3.735746 CCCTGCGTTTCAAAATTCTTGTC 59.264 43.478 0.00 0.00 0.00 3.18
696 697 3.383185 TCCCTGCGTTTCAAAATTCTTGT 59.617 39.130 0.00 0.00 0.00 3.16
697 698 3.976169 TCCCTGCGTTTCAAAATTCTTG 58.024 40.909 0.00 0.00 0.00 3.02
698 699 3.636764 ACTCCCTGCGTTTCAAAATTCTT 59.363 39.130 0.00 0.00 0.00 2.52
699 700 3.222603 ACTCCCTGCGTTTCAAAATTCT 58.777 40.909 0.00 0.00 0.00 2.40
700 701 3.643159 ACTCCCTGCGTTTCAAAATTC 57.357 42.857 0.00 0.00 0.00 2.17
701 702 5.722021 ATTACTCCCTGCGTTTCAAAATT 57.278 34.783 0.00 0.00 0.00 1.82
702 703 7.990886 TCTATATTACTCCCTGCGTTTCAAAAT 59.009 33.333 0.00 0.00 0.00 1.82
703 704 7.279313 GTCTATATTACTCCCTGCGTTTCAAAA 59.721 37.037 0.00 0.00 0.00 2.44
704 705 6.759827 GTCTATATTACTCCCTGCGTTTCAAA 59.240 38.462 0.00 0.00 0.00 2.69
705 706 6.278363 GTCTATATTACTCCCTGCGTTTCAA 58.722 40.000 0.00 0.00 0.00 2.69
706 707 5.506815 CGTCTATATTACTCCCTGCGTTTCA 60.507 44.000 0.00 0.00 0.00 2.69
707 708 4.916249 CGTCTATATTACTCCCTGCGTTTC 59.084 45.833 0.00 0.00 0.00 2.78
708 709 4.261909 CCGTCTATATTACTCCCTGCGTTT 60.262 45.833 0.00 0.00 0.00 3.60
709 710 3.255149 CCGTCTATATTACTCCCTGCGTT 59.745 47.826 0.00 0.00 0.00 4.84
710 711 2.818432 CCGTCTATATTACTCCCTGCGT 59.182 50.000 0.00 0.00 0.00 5.24
711 712 3.079578 TCCGTCTATATTACTCCCTGCG 58.920 50.000 0.00 0.00 0.00 5.18
712 713 4.098196 GGATCCGTCTATATTACTCCCTGC 59.902 50.000 0.00 0.00 0.00 4.85
713 714 5.511363 AGGATCCGTCTATATTACTCCCTG 58.489 45.833 5.98 0.00 0.00 4.45
714 715 5.799978 AGGATCCGTCTATATTACTCCCT 57.200 43.478 5.98 0.00 0.00 4.20
715 716 6.854091 AAAGGATCCGTCTATATTACTCCC 57.146 41.667 5.98 0.00 0.00 4.30
724 725 9.408648 ACATGATTTTTAAAAGGATCCGTCTAT 57.591 29.630 5.98 0.00 0.00 1.98
725 726 8.801882 ACATGATTTTTAAAAGGATCCGTCTA 57.198 30.769 5.98 0.00 0.00 2.59
726 727 7.611855 AGACATGATTTTTAAAAGGATCCGTCT 59.388 33.333 18.23 18.23 31.18 4.18
727 728 7.762382 AGACATGATTTTTAAAAGGATCCGTC 58.238 34.615 5.98 15.93 0.00 4.79
728 729 7.703058 AGACATGATTTTTAAAAGGATCCGT 57.297 32.000 5.98 0.00 0.00 4.69
729 730 9.884465 GATAGACATGATTTTTAAAAGGATCCG 57.116 33.333 5.98 4.74 0.00 4.18
733 734 9.753674 ACAGGATAGACATGATTTTTAAAAGGA 57.246 29.630 0.00 0.00 34.19 3.36
742 743 9.314321 CGTTTAGTAACAGGATAGACATGATTT 57.686 33.333 0.00 0.00 33.75 2.17
743 744 7.438459 GCGTTTAGTAACAGGATAGACATGATT 59.562 37.037 0.00 0.00 33.75 2.57
744 745 6.924060 GCGTTTAGTAACAGGATAGACATGAT 59.076 38.462 0.00 0.00 33.75 2.45
745 746 6.096423 AGCGTTTAGTAACAGGATAGACATGA 59.904 38.462 0.00 0.00 33.75 3.07
746 747 6.273825 AGCGTTTAGTAACAGGATAGACATG 58.726 40.000 0.00 0.00 33.75 3.21
747 748 6.466885 AGCGTTTAGTAACAGGATAGACAT 57.533 37.500 0.00 0.00 33.75 3.06
748 749 5.909621 AGCGTTTAGTAACAGGATAGACA 57.090 39.130 0.00 0.00 33.75 3.41
749 750 9.609950 CTATTAGCGTTTAGTAACAGGATAGAC 57.390 37.037 0.00 0.00 33.75 2.59
750 751 9.565090 TCTATTAGCGTTTAGTAACAGGATAGA 57.435 33.333 0.00 0.00 33.75 1.98
751 752 9.828852 CTCTATTAGCGTTTAGTAACAGGATAG 57.171 37.037 0.00 0.00 33.75 2.08
752 753 8.790718 CCTCTATTAGCGTTTAGTAACAGGATA 58.209 37.037 0.00 0.00 33.75 2.59
753 754 7.255871 CCCTCTATTAGCGTTTAGTAACAGGAT 60.256 40.741 0.00 0.00 33.75 3.24
754 755 6.040166 CCCTCTATTAGCGTTTAGTAACAGGA 59.960 42.308 0.00 0.00 33.75 3.86
755 756 6.214399 CCCTCTATTAGCGTTTAGTAACAGG 58.786 44.000 0.00 0.00 33.75 4.00
756 757 5.690857 GCCCTCTATTAGCGTTTAGTAACAG 59.309 44.000 0.00 0.00 33.75 3.16
757 758 5.127519 TGCCCTCTATTAGCGTTTAGTAACA 59.872 40.000 0.00 0.00 33.75 2.41
758 759 5.594926 TGCCCTCTATTAGCGTTTAGTAAC 58.405 41.667 0.00 0.00 0.00 2.50
759 760 5.221382 CCTGCCCTCTATTAGCGTTTAGTAA 60.221 44.000 0.00 0.00 0.00 2.24
760 761 4.280174 CCTGCCCTCTATTAGCGTTTAGTA 59.720 45.833 0.00 0.00 0.00 1.82
761 762 3.069729 CCTGCCCTCTATTAGCGTTTAGT 59.930 47.826 0.00 0.00 0.00 2.24
762 763 3.069729 ACCTGCCCTCTATTAGCGTTTAG 59.930 47.826 0.00 0.00 0.00 1.85
772 773 0.548510 GGAAAGCACCTGCCCTCTAT 59.451 55.000 0.00 0.00 43.38 1.98
781 782 8.978874 ATTTTCAATTTAAAAGGAAAGCACCT 57.021 26.923 13.80 0.00 42.69 4.00
801 802 7.637709 AATCTCGTTGCCAGTTTTTATTTTC 57.362 32.000 0.00 0.00 0.00 2.29
835 840 3.435671 CGCTGGGTAAATCTCGTCTTTTT 59.564 43.478 0.00 0.00 0.00 1.94
854 860 2.665185 GAAACACGGCTGGACGCT 60.665 61.111 0.00 0.00 39.13 5.07
916 922 0.106149 GGGTGAACTTGACGTGGAGT 59.894 55.000 0.00 0.00 0.00 3.85
1153 1165 3.148279 ACGATCCAGCCGTCCTCC 61.148 66.667 0.00 0.00 34.97 4.30
1408 1423 1.226603 CCACTCGGACCGATCGTTC 60.227 63.158 18.71 9.55 34.61 3.95
1413 1428 0.531200 GAAGAACCACTCGGACCGAT 59.469 55.000 18.71 0.88 34.61 4.18
1414 1429 0.538977 AGAAGAACCACTCGGACCGA 60.539 55.000 17.28 17.28 35.59 4.69
1418 1433 1.000607 CACGAAGAAGAACCACTCGGA 60.001 52.381 0.00 0.00 35.59 4.55
1726 1741 1.374125 CATGTCTGGACGGTGCGAA 60.374 57.895 0.00 0.00 0.00 4.70
1930 1945 1.296755 TGTCCTCGTCGTTCTCCTCG 61.297 60.000 0.00 0.00 0.00 4.63
2057 2072 4.099170 CGTCGCGTCGTCTTCCCT 62.099 66.667 17.43 0.00 0.00 4.20
2123 2138 1.004918 CGTGCGGGAAGTCCTTTCT 60.005 57.895 0.00 0.00 36.03 2.52
2125 2140 2.032071 CCGTGCGGGAAGTCCTTT 59.968 61.111 2.15 0.00 38.47 3.11
2152 2167 1.243342 CCATTGGTGCCTTCGCTGAA 61.243 55.000 0.00 0.00 35.36 3.02
2153 2168 1.675310 CCATTGGTGCCTTCGCTGA 60.675 57.895 0.00 0.00 35.36 4.26
2236 2251 2.341846 TTTCTGGTGAAGGAAGCGTT 57.658 45.000 0.00 0.00 33.28 4.84
2237 2252 2.554032 CAATTTCTGGTGAAGGAAGCGT 59.446 45.455 0.00 0.00 33.28 5.07
2241 2256 4.460382 GCAGATCAATTTCTGGTGAAGGAA 59.540 41.667 8.80 0.00 42.78 3.36
2247 2262 5.357314 AGAATCTGCAGATCAATTTCTGGTG 59.643 40.000 28.83 0.00 42.78 4.17
2249 2264 5.822278 CAGAATCTGCAGATCAATTTCTGG 58.178 41.667 31.59 20.64 42.78 3.86
2273 2288 2.544480 TCAGTCTAAGTCGTGCATCG 57.456 50.000 0.00 0.00 41.41 3.84
2274 2289 4.090642 CAGTTTCAGTCTAAGTCGTGCATC 59.909 45.833 0.00 0.00 0.00 3.91
2318 2333 1.204113 CCCCTGCTGGAAGAGAACCT 61.204 60.000 11.88 0.00 34.07 3.50
2334 2349 1.751351 GCCACTCTTTATTGCTTCCCC 59.249 52.381 0.00 0.00 0.00 4.81
2353 2368 9.478019 GTCGTTCTTTTGCATATATATACATGC 57.522 33.333 17.37 17.37 46.21 4.06
2365 2380 4.836125 AATGACTGTCGTTCTTTTGCAT 57.164 36.364 9.40 0.00 0.00 3.96
2366 2381 4.350346 CAAATGACTGTCGTTCTTTTGCA 58.650 39.130 15.10 0.00 0.00 4.08
2383 2398 4.549458 GCGATATCATCAAACCCCAAATG 58.451 43.478 3.12 0.00 0.00 2.32
2404 2419 8.641499 TTGGAAATAAATCAAATTATGTCGGC 57.359 30.769 0.00 0.00 32.48 5.54
2434 2449 9.944376 TGCTGTCTAGTATTTCTAAATGTCTTT 57.056 29.630 0.00 0.00 0.00 2.52
2435 2450 9.944376 TTGCTGTCTAGTATTTCTAAATGTCTT 57.056 29.630 0.00 0.00 0.00 3.01
2436 2451 9.372369 GTTGCTGTCTAGTATTTCTAAATGTCT 57.628 33.333 0.00 0.69 0.00 3.41
2437 2452 9.151471 TGTTGCTGTCTAGTATTTCTAAATGTC 57.849 33.333 0.00 0.00 0.00 3.06
2441 2456 7.119262 GGCTTGTTGCTGTCTAGTATTTCTAAA 59.881 37.037 0.00 0.00 42.39 1.85
2443 2458 6.106673 GGCTTGTTGCTGTCTAGTATTTCTA 58.893 40.000 0.00 0.00 42.39 2.10
2447 2462 3.264450 AGGGCTTGTTGCTGTCTAGTATT 59.736 43.478 0.00 0.00 42.39 1.89
2448 2463 2.840651 AGGGCTTGTTGCTGTCTAGTAT 59.159 45.455 0.00 0.00 42.39 2.12
2493 2528 3.322211 TCCCGTGTCATGAAATAACGT 57.678 42.857 15.83 0.00 0.00 3.99
2582 2617 2.037381 GGGTTCTTCTTCGAAGACCACT 59.963 50.000 27.03 0.00 34.32 4.00
2603 2638 2.334653 GAGGCTGGAGCGATCTCG 59.665 66.667 0.00 0.00 43.26 4.04
2621 2656 2.675056 GCTGGTTGCTCTGCTGACG 61.675 63.158 0.00 0.00 38.95 4.35
2937 2974 9.454859 CTTGGGAGAAACTCTTATTGAACTAAT 57.545 33.333 0.00 0.00 0.00 1.73
2997 3034 9.661187 CATGTTCTAAGTTCTAATTGCATCATC 57.339 33.333 0.00 0.00 0.00 2.92
3034 3072 6.314152 GCTACTACTCATCTACGCTCATGATA 59.686 42.308 0.00 0.00 0.00 2.15
3061 3125 0.109086 CTGTGCTCCCAGTCGTACTG 60.109 60.000 7.72 7.72 45.53 2.74
3129 3199 4.347292 TGCTATCATCAGAGCCTCAGATTT 59.653 41.667 0.00 0.00 37.94 2.17
3139 3209 4.620609 GCAATCTACGTGCTATCATCAGAG 59.379 45.833 0.00 0.00 39.00 3.35
3154 3224 8.715998 CCAACTATGAATCACTATGCAATCTAC 58.284 37.037 0.00 0.00 0.00 2.59
3161 3231 4.757149 GGACCCAACTATGAATCACTATGC 59.243 45.833 0.00 0.00 0.00 3.14
3183 3253 3.600388 AGAAGTAATTGAGGTCGCAAGG 58.400 45.455 0.00 0.00 38.47 3.61
3259 3329 5.752955 GCTGTGATCTCAAATCTCTTAGGAC 59.247 44.000 0.00 0.00 0.00 3.85
3263 3333 5.046376 TGTGGCTGTGATCTCAAATCTCTTA 60.046 40.000 0.00 0.00 0.00 2.10
3282 3352 4.446371 AGCTCACTAAGTAATGATGTGGC 58.554 43.478 0.00 0.00 0.00 5.01
3283 3353 7.223582 CAGTAAGCTCACTAAGTAATGATGTGG 59.776 40.741 0.00 0.00 0.00 4.17
3332 3402 6.782082 TTTAATATGCCAGCACCATTTGTA 57.218 33.333 0.00 0.00 0.00 2.41
3334 3404 6.987992 AGAATTTAATATGCCAGCACCATTTG 59.012 34.615 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.