Multiple sequence alignment - TraesCS2B01G381600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G381600 chr2B 100.000 4090 0 0 1 4090 545267298 545271387 0.000000e+00 7553.0
1 TraesCS2B01G381600 chr2B 96.491 57 1 1 1815 1871 545269029 545269084 4.350000e-15 93.5
2 TraesCS2B01G381600 chr2B 96.491 57 1 1 1732 1787 545269112 545269168 4.350000e-15 93.5
3 TraesCS2B01G381600 chr2B 93.220 59 4 0 1666 1724 545268840 545268898 2.030000e-13 87.9
4 TraesCS2B01G381600 chr2B 93.220 59 4 0 1543 1601 545268963 545269021 2.030000e-13 87.9
5 TraesCS2B01G381600 chr2D 92.392 1827 114 14 2276 4090 466683420 466685233 0.000000e+00 2580.0
6 TraesCS2B01G381600 chr2D 87.657 875 49 18 858 1724 466682048 466682871 0.000000e+00 963.0
7 TraesCS2B01G381600 chr2D 88.976 635 39 12 1546 2179 466682816 466683420 0.000000e+00 756.0
8 TraesCS2B01G381600 chr2D 88.498 313 16 11 1 301 463879598 463879902 1.080000e-95 361.0
9 TraesCS2B01G381600 chr2D 91.716 169 10 3 646 814 466681581 466681745 8.840000e-57 231.0
10 TraesCS2B01G381600 chr2D 93.651 63 4 0 1543 1605 466682936 466682998 1.210000e-15 95.3
11 TraesCS2B01G381600 chr2A 90.491 1609 92 24 2507 4089 607829627 607831200 0.000000e+00 2067.0
12 TraesCS2B01G381600 chr2A 86.826 1169 64 34 643 1787 607827711 607828813 0.000000e+00 1223.0
13 TraesCS2B01G381600 chr2A 86.733 701 58 17 1803 2498 607828746 607829416 0.000000e+00 747.0
14 TraesCS2B01G381600 chr2A 87.736 318 21 8 1 303 607827180 607827494 5.030000e-94 355.0
15 TraesCS2B01G381600 chr2A 90.000 220 16 4 409 626 607827517 607827732 3.110000e-71 279.0
16 TraesCS2B01G381600 chr2A 94.915 59 3 0 1666 1724 607828569 607828627 4.350000e-15 93.5
17 TraesCS2B01G381600 chr1D 87.731 921 72 15 2091 2979 211698891 211697980 0.000000e+00 1037.0
18 TraesCS2B01G381600 chr3B 84.473 702 69 19 2092 2761 486884480 486885173 0.000000e+00 656.0
19 TraesCS2B01G381600 chr3B 92.417 211 16 0 2766 2976 486895211 486895421 6.640000e-78 302.0
20 TraesCS2B01G381600 chr5D 97.872 47 1 0 313 359 496216347 496216301 9.420000e-12 82.4
21 TraesCS2B01G381600 chr6D 100.000 43 0 0 318 360 36627757 36627715 3.390000e-11 80.5
22 TraesCS2B01G381600 chr5A 100.000 43 0 0 318 360 596034751 596034709 3.390000e-11 80.5
23 TraesCS2B01G381600 chr1B 97.826 46 1 0 315 360 539573256 539573301 3.390000e-11 80.5
24 TraesCS2B01G381600 chr1B 100.000 42 0 0 318 359 164963062 164963021 1.220000e-10 78.7
25 TraesCS2B01G381600 chr7A 97.826 46 0 1 314 359 195397887 195397843 1.220000e-10 78.7
26 TraesCS2B01G381600 chr4D 97.778 45 1 0 316 360 486767932 486767976 1.220000e-10 78.7
27 TraesCS2B01G381600 chr4A 97.778 45 1 0 315 359 251904019 251904063 1.220000e-10 78.7
28 TraesCS2B01G381600 chr4A 95.833 48 2 0 313 360 342445729 342445776 1.220000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G381600 chr2B 545267298 545271387 4089 False 1583.160000 7553 95.884400 1 4090 5 chr2B.!!$F1 4089
1 TraesCS2B01G381600 chr2D 466681581 466685233 3652 False 925.060000 2580 90.878400 646 4090 5 chr2D.!!$F2 3444
2 TraesCS2B01G381600 chr2A 607827180 607831200 4020 False 794.083333 2067 89.450167 1 4089 6 chr2A.!!$F1 4088
3 TraesCS2B01G381600 chr1D 211697980 211698891 911 True 1037.000000 1037 87.731000 2091 2979 1 chr1D.!!$R1 888
4 TraesCS2B01G381600 chr3B 486884480 486885173 693 False 656.000000 656 84.473000 2092 2761 1 chr3B.!!$F1 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
857 1151 0.249911 GAGTGGAACGTGCCAGACTT 60.250 55.0 18.11 1.43 45.86 3.01 F
2155 2665 0.099436 GCATTCGGATGTTCCTGTGC 59.901 55.0 5.39 0.00 35.63 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2283 2796 0.185901 TCTTTTCCAGGCCACAGCTT 59.814 50.0 5.01 0.0 39.73 3.74 R
3534 4303 0.406750 TGGAGGAGTACGGGTTCAGA 59.593 55.0 0.00 0.0 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.853831 CAAATTCACTATGGCTGTGCA 57.146 42.857 0.00 0.00 35.58 4.57
57 58 9.064706 GTATTTTGATTGAGATGATGAGATGGT 57.935 33.333 0.00 0.00 0.00 3.55
63 64 3.581770 TGAGATGATGAGATGGTGGATCC 59.418 47.826 4.20 4.20 0.00 3.36
67 68 2.564504 TGATGAGATGGTGGATCCGATC 59.435 50.000 7.39 8.54 39.52 3.69
80 81 0.669318 TCCGATCCAGTTGCGTTGTC 60.669 55.000 0.00 0.00 0.00 3.18
132 133 9.982651 ACTTCGTGTTAATAATCTGCTATATGT 57.017 29.630 0.00 0.00 0.00 2.29
146 147 7.789026 TCTGCTATATGTGATCATATCCCTTG 58.211 38.462 8.38 0.00 43.59 3.61
173 174 5.047943 CGTTTGTTGGGTAAATAATGGTCCA 60.048 40.000 0.00 0.00 0.00 4.02
179 180 4.667858 TGGGTAAATAATGGTCCATAGGCT 59.332 41.667 4.33 0.00 0.00 4.58
180 181 5.852807 TGGGTAAATAATGGTCCATAGGCTA 59.147 40.000 4.33 0.00 0.00 3.93
181 182 6.333168 TGGGTAAATAATGGTCCATAGGCTAA 59.667 38.462 4.33 0.00 0.00 3.09
182 183 7.147105 TGGGTAAATAATGGTCCATAGGCTAAA 60.147 37.037 4.33 0.00 0.00 1.85
183 184 7.393515 GGGTAAATAATGGTCCATAGGCTAAAG 59.606 40.741 4.33 0.00 0.00 1.85
184 185 7.942894 GGTAAATAATGGTCCATAGGCTAAAGT 59.057 37.037 4.33 0.00 0.00 2.66
185 186 9.350951 GTAAATAATGGTCCATAGGCTAAAGTT 57.649 33.333 4.33 0.00 0.00 2.66
237 245 7.902087 AGTAGATTATTAGCCTTCTGTCCATC 58.098 38.462 0.00 0.00 0.00 3.51
247 255 3.523564 CCTTCTGTCCATCTCCCCTTTTA 59.476 47.826 0.00 0.00 0.00 1.52
255 263 5.039645 TCCATCTCCCCTTTTATCACTTCT 58.960 41.667 0.00 0.00 0.00 2.85
258 266 6.126768 CCATCTCCCCTTTTATCACTTCTACA 60.127 42.308 0.00 0.00 0.00 2.74
260 268 7.510675 TCTCCCCTTTTATCACTTCTACATT 57.489 36.000 0.00 0.00 0.00 2.71
261 269 7.338710 TCTCCCCTTTTATCACTTCTACATTG 58.661 38.462 0.00 0.00 0.00 2.82
262 270 5.885912 TCCCCTTTTATCACTTCTACATTGC 59.114 40.000 0.00 0.00 0.00 3.56
291 305 5.286438 TCGTTTCTCACTTCTGATCGAAAA 58.714 37.500 0.00 0.00 27.89 2.29
295 309 7.587757 CGTTTCTCACTTCTGATCGAAAATTTT 59.412 33.333 2.28 2.28 27.89 1.82
296 310 8.685536 GTTTCTCACTTCTGATCGAAAATTTTG 58.314 33.333 8.47 1.31 27.89 2.44
297 311 6.373779 TCTCACTTCTGATCGAAAATTTTGC 58.626 36.000 8.47 0.00 0.00 3.68
299 313 4.321745 CACTTCTGATCGAAAATTTTGCGG 59.678 41.667 8.47 0.75 0.00 5.69
300 314 4.023193 ACTTCTGATCGAAAATTTTGCGGT 60.023 37.500 8.47 8.08 0.00 5.68
302 316 2.916716 CTGATCGAAAATTTTGCGGTGG 59.083 45.455 8.47 1.04 0.00 4.61
303 317 2.294791 TGATCGAAAATTTTGCGGTGGT 59.705 40.909 8.47 0.89 0.00 4.16
304 318 2.126914 TCGAAAATTTTGCGGTGGTG 57.873 45.000 8.47 0.00 0.00 4.17
305 319 1.405821 TCGAAAATTTTGCGGTGGTGT 59.594 42.857 8.47 0.00 0.00 4.16
309 323 3.802948 AAATTTTGCGGTGGTGTGTTA 57.197 38.095 0.00 0.00 0.00 2.41
310 324 4.329462 AAATTTTGCGGTGGTGTGTTAT 57.671 36.364 0.00 0.00 0.00 1.89
311 325 2.783828 TTTTGCGGTGGTGTGTTATG 57.216 45.000 0.00 0.00 0.00 1.90
312 326 1.968704 TTTGCGGTGGTGTGTTATGA 58.031 45.000 0.00 0.00 0.00 2.15
313 327 1.968704 TTGCGGTGGTGTGTTATGAA 58.031 45.000 0.00 0.00 0.00 2.57
314 328 1.968704 TGCGGTGGTGTGTTATGAAA 58.031 45.000 0.00 0.00 0.00 2.69
315 329 2.298610 TGCGGTGGTGTGTTATGAAAA 58.701 42.857 0.00 0.00 0.00 2.29
316 330 2.292016 TGCGGTGGTGTGTTATGAAAAG 59.708 45.455 0.00 0.00 0.00 2.27
317 331 2.292292 GCGGTGGTGTGTTATGAAAAGT 59.708 45.455 0.00 0.00 0.00 2.66
318 332 3.499157 GCGGTGGTGTGTTATGAAAAGTA 59.501 43.478 0.00 0.00 0.00 2.24
319 333 4.612033 GCGGTGGTGTGTTATGAAAAGTAC 60.612 45.833 0.00 0.00 0.00 2.73
320 334 4.753107 CGGTGGTGTGTTATGAAAAGTACT 59.247 41.667 0.00 0.00 0.00 2.73
321 335 5.107220 CGGTGGTGTGTTATGAAAAGTACTC 60.107 44.000 0.00 0.00 0.00 2.59
322 336 5.180680 GGTGGTGTGTTATGAAAAGTACTCC 59.819 44.000 0.00 0.00 0.00 3.85
323 337 5.180680 GTGGTGTGTTATGAAAAGTACTCCC 59.819 44.000 0.00 0.00 0.00 4.30
324 338 5.072600 TGGTGTGTTATGAAAAGTACTCCCT 59.927 40.000 0.00 0.00 0.00 4.20
325 339 5.642491 GGTGTGTTATGAAAAGTACTCCCTC 59.358 44.000 0.00 0.00 0.00 4.30
326 340 5.642491 GTGTGTTATGAAAAGTACTCCCTCC 59.358 44.000 0.00 0.00 0.00 4.30
327 341 4.868734 GTGTTATGAAAAGTACTCCCTCCG 59.131 45.833 0.00 0.00 0.00 4.63
328 342 4.529377 TGTTATGAAAAGTACTCCCTCCGT 59.471 41.667 0.00 0.00 0.00 4.69
329 343 5.012354 TGTTATGAAAAGTACTCCCTCCGTT 59.988 40.000 0.00 0.00 0.00 4.44
330 344 3.672767 TGAAAAGTACTCCCTCCGTTC 57.327 47.619 0.00 0.00 0.00 3.95
331 345 2.301009 TGAAAAGTACTCCCTCCGTTCC 59.699 50.000 0.00 0.00 0.00 3.62
332 346 2.019807 AAAGTACTCCCTCCGTTCCA 57.980 50.000 0.00 0.00 0.00 3.53
333 347 2.249309 AAGTACTCCCTCCGTTCCAT 57.751 50.000 0.00 0.00 0.00 3.41
334 348 3.393426 AAGTACTCCCTCCGTTCCATA 57.607 47.619 0.00 0.00 0.00 2.74
335 349 3.614568 AGTACTCCCTCCGTTCCATAT 57.385 47.619 0.00 0.00 0.00 1.78
336 350 3.924922 AGTACTCCCTCCGTTCCATATT 58.075 45.455 0.00 0.00 0.00 1.28
337 351 5.070823 AGTACTCCCTCCGTTCCATATTA 57.929 43.478 0.00 0.00 0.00 0.98
338 352 4.831710 AGTACTCCCTCCGTTCCATATTAC 59.168 45.833 0.00 0.00 0.00 1.89
339 353 3.924922 ACTCCCTCCGTTCCATATTACT 58.075 45.455 0.00 0.00 0.00 2.24
340 354 3.896272 ACTCCCTCCGTTCCATATTACTC 59.104 47.826 0.00 0.00 0.00 2.59
341 355 2.889045 TCCCTCCGTTCCATATTACTCG 59.111 50.000 0.00 0.00 0.00 4.18
342 356 2.626743 CCCTCCGTTCCATATTACTCGT 59.373 50.000 0.00 0.00 0.00 4.18
343 357 3.069158 CCCTCCGTTCCATATTACTCGTT 59.931 47.826 0.00 0.00 0.00 3.85
344 358 4.049186 CCTCCGTTCCATATTACTCGTTG 58.951 47.826 0.00 0.00 0.00 4.10
345 359 3.450578 TCCGTTCCATATTACTCGTTGC 58.549 45.455 0.00 0.00 0.00 4.17
346 360 3.131577 TCCGTTCCATATTACTCGTTGCT 59.868 43.478 0.00 0.00 0.00 3.91
347 361 3.245284 CCGTTCCATATTACTCGTTGCTG 59.755 47.826 0.00 0.00 0.00 4.41
348 362 4.109766 CGTTCCATATTACTCGTTGCTGA 58.890 43.478 0.00 0.00 0.00 4.26
349 363 4.745125 CGTTCCATATTACTCGTTGCTGAT 59.255 41.667 0.00 0.00 0.00 2.90
350 364 5.234329 CGTTCCATATTACTCGTTGCTGATT 59.766 40.000 0.00 0.00 0.00 2.57
351 365 6.238103 CGTTCCATATTACTCGTTGCTGATTT 60.238 38.462 0.00 0.00 0.00 2.17
352 366 7.042992 CGTTCCATATTACTCGTTGCTGATTTA 60.043 37.037 0.00 0.00 0.00 1.40
353 367 7.946655 TCCATATTACTCGTTGCTGATTTAG 57.053 36.000 0.00 0.00 0.00 1.85
354 368 7.497595 TCCATATTACTCGTTGCTGATTTAGT 58.502 34.615 0.00 0.00 0.00 2.24
355 369 8.635328 TCCATATTACTCGTTGCTGATTTAGTA 58.365 33.333 0.00 0.00 0.00 1.82
356 370 8.700644 CCATATTACTCGTTGCTGATTTAGTAC 58.299 37.037 0.00 0.00 0.00 2.73
357 371 9.244799 CATATTACTCGTTGCTGATTTAGTACA 57.755 33.333 0.00 0.00 0.00 2.90
358 372 9.811995 ATATTACTCGTTGCTGATTTAGTACAA 57.188 29.630 0.00 0.00 0.00 2.41
359 373 7.949903 TTACTCGTTGCTGATTTAGTACAAA 57.050 32.000 0.00 0.00 0.00 2.83
360 374 8.542497 TTACTCGTTGCTGATTTAGTACAAAT 57.458 30.769 0.00 0.00 0.00 2.32
361 375 6.831769 ACTCGTTGCTGATTTAGTACAAATG 58.168 36.000 7.66 0.00 0.00 2.32
362 376 6.128282 ACTCGTTGCTGATTTAGTACAAATGG 60.128 38.462 7.66 3.59 0.00 3.16
363 377 5.703592 TCGTTGCTGATTTAGTACAAATGGT 59.296 36.000 7.66 0.00 0.00 3.55
364 378 6.205853 TCGTTGCTGATTTAGTACAAATGGTT 59.794 34.615 7.66 0.00 0.00 3.67
384 398 5.883673 TGGTTTATACTTGCATTGGTCCTAC 59.116 40.000 0.00 0.00 0.00 3.18
388 402 0.447801 CTTGCATTGGTCCTACGTGC 59.552 55.000 0.00 0.00 36.39 5.34
392 406 1.676014 GCATTGGTCCTACGTGCTCTT 60.676 52.381 0.00 0.00 33.25 2.85
393 407 2.699954 CATTGGTCCTACGTGCTCTTT 58.300 47.619 0.00 0.00 0.00 2.52
394 408 2.922740 TTGGTCCTACGTGCTCTTTT 57.077 45.000 0.00 0.00 0.00 2.27
395 409 2.922740 TGGTCCTACGTGCTCTTTTT 57.077 45.000 0.00 0.00 0.00 1.94
416 430 2.373540 TTTTGCGCATAGTCCTACGT 57.626 45.000 12.75 0.00 0.00 3.57
417 431 1.635844 TTTGCGCATAGTCCTACGTG 58.364 50.000 12.75 0.00 0.00 4.49
418 432 0.804544 TTGCGCATAGTCCTACGTGC 60.805 55.000 12.75 0.00 35.59 5.34
419 433 1.065928 GCGCATAGTCCTACGTGCT 59.934 57.895 0.30 0.00 32.73 4.40
420 434 0.935366 GCGCATAGTCCTACGTGCTC 60.935 60.000 0.30 0.00 32.73 4.26
434 448 6.206634 TCCTACGTGCTCTTTGATTTGAAAAT 59.793 34.615 0.00 0.00 0.00 1.82
454 468 9.965824 TGAAAATTTCTTGTATCTTCTGGAAAC 57.034 29.630 7.29 0.00 0.00 2.78
462 476 9.712305 TCTTGTATCTTCTGGAAACTAAAGAAG 57.288 33.333 5.49 5.49 45.42 2.85
467 481 6.760291 TCTTCTGGAAACTAAAGAAGTCTCC 58.240 40.000 10.51 0.00 44.59 3.71
486 500 5.049680 GTCTCCTTCGCTGTAAAATTGTTCA 60.050 40.000 0.00 0.00 0.00 3.18
506 520 6.529829 TGTTCAAAAACATGTGAGTAGCAAAC 59.470 34.615 0.00 0.00 40.45 2.93
509 523 2.543777 ACATGTGAGTAGCAAACGGT 57.456 45.000 0.00 0.00 0.00 4.83
510 524 2.143122 ACATGTGAGTAGCAAACGGTG 58.857 47.619 0.00 0.00 0.00 4.94
512 526 0.466543 TGTGAGTAGCAAACGGTGGT 59.533 50.000 0.00 0.00 41.93 4.16
513 527 1.145803 GTGAGTAGCAAACGGTGGTC 58.854 55.000 0.00 0.00 39.22 4.02
514 528 0.319211 TGAGTAGCAAACGGTGGTCG 60.319 55.000 0.00 0.00 45.88 4.79
515 529 1.005394 AGTAGCAAACGGTGGTCGG 60.005 57.895 0.00 0.00 44.45 4.79
516 530 2.357760 TAGCAAACGGTGGTCGGC 60.358 61.111 0.00 0.00 44.45 5.54
519 533 4.973055 CAAACGGTGGTCGGCGGA 62.973 66.667 7.21 0.00 44.45 5.54
526 541 0.319641 GGTGGTCGGCGGAGATTATC 60.320 60.000 7.21 0.00 0.00 1.75
574 589 2.034066 CCATGGTGTGAAGGCGGT 59.966 61.111 2.57 0.00 0.00 5.68
608 623 3.359523 CCGTCACGTCTCCGGTGA 61.360 66.667 0.00 0.06 38.78 4.02
609 624 2.176055 CGTCACGTCTCCGGTGAG 59.824 66.667 6.43 4.13 40.17 3.51
610 625 2.567049 GTCACGTCTCCGGTGAGG 59.433 66.667 21.24 21.24 39.23 3.86
611 626 2.114625 TCACGTCTCCGGTGAGGT 59.885 61.111 22.45 22.45 41.99 3.85
612 627 1.970114 TCACGTCTCCGGTGAGGTC 60.970 63.158 24.61 5.81 41.99 3.85
613 628 3.054503 ACGTCTCCGGTGAGGTCG 61.055 66.667 22.45 17.07 41.99 4.79
614 629 4.477975 CGTCTCCGGTGAGGTCGC 62.478 72.222 16.14 0.21 41.99 5.19
615 630 4.131088 GTCTCCGGTGAGGTCGCC 62.131 72.222 6.43 0.00 42.91 5.54
616 631 4.361971 TCTCCGGTGAGGTCGCCT 62.362 66.667 0.00 0.00 44.11 5.52
617 632 3.382832 CTCCGGTGAGGTCGCCTT 61.383 66.667 0.00 0.00 44.11 4.35
618 633 3.358076 CTCCGGTGAGGTCGCCTTC 62.358 68.421 0.00 0.00 44.11 3.46
619 634 3.382832 CCGGTGAGGTCGCCTTCT 61.383 66.667 7.94 0.00 44.11 2.85
620 635 2.050350 CCGGTGAGGTCGCCTTCTA 61.050 63.158 7.94 0.00 44.11 2.10
621 636 1.139095 CGGTGAGGTCGCCTTCTAC 59.861 63.158 7.94 1.51 44.11 2.59
622 637 1.313812 CGGTGAGGTCGCCTTCTACT 61.314 60.000 7.94 0.00 44.11 2.57
623 638 0.896226 GGTGAGGTCGCCTTCTACTT 59.104 55.000 2.10 0.00 43.02 2.24
624 639 1.275573 GGTGAGGTCGCCTTCTACTTT 59.724 52.381 2.10 0.00 43.02 2.66
625 640 2.289506 GGTGAGGTCGCCTTCTACTTTT 60.290 50.000 2.10 0.00 43.02 2.27
626 641 3.400255 GTGAGGTCGCCTTCTACTTTTT 58.600 45.455 0.00 0.00 31.76 1.94
814 835 4.321601 CGGAGCAAGAGAAGAGAAAGAGAA 60.322 45.833 0.00 0.00 0.00 2.87
815 836 5.170748 GGAGCAAGAGAAGAGAAAGAGAAG 58.829 45.833 0.00 0.00 0.00 2.85
816 837 5.047377 GGAGCAAGAGAAGAGAAAGAGAAGA 60.047 44.000 0.00 0.00 0.00 2.87
817 838 6.029346 AGCAAGAGAAGAGAAAGAGAAGAG 57.971 41.667 0.00 0.00 0.00 2.85
818 839 5.774690 AGCAAGAGAAGAGAAAGAGAAGAGA 59.225 40.000 0.00 0.00 0.00 3.10
830 1124 1.470890 GAGAAGAGAGTCTCCACACGG 59.529 57.143 16.74 0.00 38.51 4.94
853 1147 2.310233 CGTGAGTGGAACGTGCCAG 61.310 63.158 18.11 0.00 45.86 4.85
854 1148 1.069090 GTGAGTGGAACGTGCCAGA 59.931 57.895 18.11 0.00 45.86 3.86
855 1149 1.069090 TGAGTGGAACGTGCCAGAC 59.931 57.895 18.11 13.68 45.86 3.51
856 1150 1.367840 GAGTGGAACGTGCCAGACT 59.632 57.895 18.11 11.00 45.86 3.24
857 1151 0.249911 GAGTGGAACGTGCCAGACTT 60.250 55.000 18.11 1.43 45.86 3.01
858 1152 0.532862 AGTGGAACGTGCCAGACTTG 60.533 55.000 18.11 0.00 45.86 3.16
859 1153 0.814010 GTGGAACGTGCCAGACTTGT 60.814 55.000 18.11 0.00 38.95 3.16
860 1154 0.531974 TGGAACGTGCCAGACTTGTC 60.532 55.000 12.64 0.00 33.10 3.18
861 1155 0.531974 GGAACGTGCCAGACTTGTCA 60.532 55.000 8.05 0.00 0.00 3.58
910 1204 1.153647 CACTGATTACGCGAGCCCA 60.154 57.895 15.93 4.38 0.00 5.36
911 1205 1.141881 ACTGATTACGCGAGCCCAG 59.858 57.895 15.93 16.52 0.00 4.45
912 1206 2.202878 TGATTACGCGAGCCCAGC 60.203 61.111 15.93 0.00 0.00 4.85
913 1207 2.967615 GATTACGCGAGCCCAGCC 60.968 66.667 15.93 0.00 0.00 4.85
914 1208 4.547367 ATTACGCGAGCCCAGCCC 62.547 66.667 15.93 0.00 0.00 5.19
1020 1325 2.864114 GGGTACCGCTTTTTCCTCC 58.136 57.895 5.65 0.00 40.86 4.30
1123 1435 2.887783 GTCTTCAGGTCTGTGTCTCTCA 59.112 50.000 0.00 0.00 0.00 3.27
1132 1444 0.251832 TGTGTCTCTCACCCCTCTCC 60.252 60.000 0.00 0.00 45.61 3.71
1133 1445 0.973496 GTGTCTCTCACCCCTCTCCC 60.973 65.000 0.00 0.00 40.84 4.30
1134 1446 1.382009 GTCTCTCACCCCTCTCCCC 60.382 68.421 0.00 0.00 0.00 4.81
1135 1447 1.547755 TCTCTCACCCCTCTCCCCT 60.548 63.158 0.00 0.00 0.00 4.79
1136 1448 1.075600 CTCTCACCCCTCTCCCCTC 60.076 68.421 0.00 0.00 0.00 4.30
1137 1449 1.547755 TCTCACCCCTCTCCCCTCT 60.548 63.158 0.00 0.00 0.00 3.69
1138 1450 1.075600 CTCACCCCTCTCCCCTCTC 60.076 68.421 0.00 0.00 0.00 3.20
1139 1451 2.041405 CACCCCTCTCCCCTCTCC 60.041 72.222 0.00 0.00 0.00 3.71
1140 1452 3.369388 ACCCCTCTCCCCTCTCCC 61.369 72.222 0.00 0.00 0.00 4.30
1141 1453 4.179599 CCCCTCTCCCCTCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
1146 1458 2.015726 TCTCCCCTCTCCCCTCTCC 61.016 68.421 0.00 0.00 0.00 3.71
1153 1465 0.267356 CTCTCCCCTCTCCCCATCTT 59.733 60.000 0.00 0.00 0.00 2.40
1167 1479 1.212616 CATCTTTCTCACCGATCGCC 58.787 55.000 10.32 0.00 0.00 5.54
1178 1490 2.281345 GATCGCCCCTGCCATGAG 60.281 66.667 0.00 0.00 0.00 2.90
1202 1514 3.793144 CCGCTGAACTCGCCTTGC 61.793 66.667 0.00 0.00 0.00 4.01
1208 1520 2.863704 GCTGAACTCGCCTTGCAAATTT 60.864 45.455 0.00 0.00 0.00 1.82
1209 1521 3.383761 CTGAACTCGCCTTGCAAATTTT 58.616 40.909 0.00 0.00 0.00 1.82
1210 1522 4.545610 CTGAACTCGCCTTGCAAATTTTA 58.454 39.130 0.00 0.00 0.00 1.52
1236 1548 3.055094 TGTGATAAGAACTGAGAAGGGGC 60.055 47.826 0.00 0.00 0.00 5.80
1239 1551 1.439543 AAGAACTGAGAAGGGGCTGT 58.560 50.000 0.00 0.00 0.00 4.40
1285 1603 5.992217 ACACTATTTCCGCATCTTATCCTTC 59.008 40.000 0.00 0.00 0.00 3.46
1297 1615 4.995124 TCTTATCCTTCGTCTTCTTTCCG 58.005 43.478 0.00 0.00 0.00 4.30
1326 1644 6.071896 TCCCTATGAGTAGAGCATATTCGTTG 60.072 42.308 0.00 0.00 0.00 4.10
1327 1645 5.574830 CCTATGAGTAGAGCATATTCGTTGC 59.425 44.000 0.00 0.00 40.45 4.17
1382 1700 0.321671 CGGTGGAGGAAGAAAGCTGA 59.678 55.000 0.00 0.00 0.00 4.26
1385 1703 2.421619 GTGGAGGAAGAAAGCTGACTG 58.578 52.381 0.00 0.00 0.00 3.51
1442 1762 4.222810 ACCCAAATCCTATTGGCTTGTTTC 59.777 41.667 0.49 0.00 46.97 2.78
1457 1777 1.160137 GTTTCAACTCTGGATGCGCT 58.840 50.000 9.73 0.00 0.00 5.92
1482 1802 2.879026 GCCGTGAAATTAAGGATCCTCC 59.121 50.000 16.52 1.28 36.58 4.30
1511 1838 4.219944 GGGATTCAAAAGTTGTTAGGGGAC 59.780 45.833 0.00 0.00 0.00 4.46
1525 1852 0.179702 GGGGACTACGGGGATGTTTC 59.820 60.000 0.00 0.00 0.00 2.78
1541 1868 4.689612 TGTTTCCATGGATCTACTAGCC 57.310 45.455 17.06 0.00 0.00 3.93
1650 2096 7.193377 TCCGTTCCAAAGTAAATTAAGTGTC 57.807 36.000 0.00 0.00 0.00 3.67
1682 2128 3.907894 TCAAGTTTTATGTTGCGTCCC 57.092 42.857 0.00 0.00 0.00 4.46
1740 2250 9.395707 CTGTTCCGATCAAATATGTAGTAGTAC 57.604 37.037 0.37 0.37 0.00 2.73
1741 2251 9.128404 TGTTCCGATCAAATATGTAGTAGTACT 57.872 33.333 8.14 8.14 0.00 2.73
1742 2252 9.395707 GTTCCGATCAAATATGTAGTAGTACTG 57.604 37.037 13.29 0.00 0.00 2.74
1743 2253 8.687292 TCCGATCAAATATGTAGTAGTACTGT 57.313 34.615 13.29 1.94 0.00 3.55
1744 2254 9.783081 TCCGATCAAATATGTAGTAGTACTGTA 57.217 33.333 13.29 2.11 0.00 2.74
1755 2265 9.994432 ATGTAGTAGTACTGTATTTGTAACGAC 57.006 33.333 13.29 0.00 0.00 4.34
1756 2266 8.998377 TGTAGTAGTACTGTATTTGTAACGACA 58.002 33.333 13.29 2.24 0.00 4.35
1757 2267 9.994432 GTAGTAGTACTGTATTTGTAACGACAT 57.006 33.333 13.29 0.00 34.86 3.06
1758 2268 8.906636 AGTAGTACTGTATTTGTAACGACATG 57.093 34.615 5.39 0.00 34.86 3.21
1759 2269 8.517878 AGTAGTACTGTATTTGTAACGACATGT 58.482 33.333 5.39 0.00 34.86 3.21
1760 2270 9.132521 GTAGTACTGTATTTGTAACGACATGTT 57.867 33.333 5.39 0.00 44.78 2.71
1761 2271 8.597662 AGTACTGTATTTGTAACGACATGTTT 57.402 30.769 0.00 0.00 42.09 2.83
1762 2272 8.492748 AGTACTGTATTTGTAACGACATGTTTG 58.507 33.333 0.00 0.00 42.09 2.93
1763 2273 7.485418 ACTGTATTTGTAACGACATGTTTGA 57.515 32.000 0.00 0.00 42.09 2.69
1764 2274 8.094798 ACTGTATTTGTAACGACATGTTTGAT 57.905 30.769 0.00 0.00 42.09 2.57
1765 2275 8.015087 ACTGTATTTGTAACGACATGTTTGATG 58.985 33.333 0.00 0.00 42.09 3.07
1766 2276 6.799441 TGTATTTGTAACGACATGTTTGATGC 59.201 34.615 0.00 0.00 42.09 3.91
1767 2277 3.822594 TGTAACGACATGTTTGATGCC 57.177 42.857 0.00 0.00 42.09 4.40
1768 2278 2.486203 TGTAACGACATGTTTGATGCCC 59.514 45.455 0.00 0.00 42.09 5.36
1769 2279 1.614996 AACGACATGTTTGATGCCCA 58.385 45.000 0.00 0.00 37.59 5.36
1770 2280 1.614996 ACGACATGTTTGATGCCCAA 58.385 45.000 0.00 0.00 0.00 4.12
1771 2281 2.170166 ACGACATGTTTGATGCCCAAT 58.830 42.857 0.00 0.00 34.23 3.16
1772 2282 2.094597 ACGACATGTTTGATGCCCAATG 60.095 45.455 0.00 0.00 34.23 2.82
1773 2283 2.273557 GACATGTTTGATGCCCAATGC 58.726 47.619 0.00 0.00 41.77 3.56
1774 2284 1.903860 ACATGTTTGATGCCCAATGCT 59.096 42.857 0.00 0.00 42.00 3.79
1775 2285 3.098377 ACATGTTTGATGCCCAATGCTA 58.902 40.909 0.00 0.00 42.00 3.49
1776 2286 3.119029 ACATGTTTGATGCCCAATGCTAC 60.119 43.478 0.00 0.00 42.00 3.58
1777 2287 2.523245 TGTTTGATGCCCAATGCTACA 58.477 42.857 0.00 0.00 42.00 2.74
1778 2288 3.098377 TGTTTGATGCCCAATGCTACAT 58.902 40.909 0.00 0.00 42.00 2.29
1779 2289 3.119065 TGTTTGATGCCCAATGCTACATG 60.119 43.478 0.00 0.00 42.00 3.21
1780 2290 1.034356 TGATGCCCAATGCTACATGC 58.966 50.000 0.00 0.00 42.00 4.06
1781 2291 0.316204 GATGCCCAATGCTACATGCC 59.684 55.000 0.00 0.00 42.00 4.40
1782 2292 1.117142 ATGCCCAATGCTACATGCCC 61.117 55.000 0.00 0.00 42.00 5.36
1783 2293 1.456331 GCCCAATGCTACATGCCCT 60.456 57.895 0.00 0.00 42.00 5.19
1784 2294 1.741327 GCCCAATGCTACATGCCCTG 61.741 60.000 0.00 0.00 42.00 4.45
1785 2295 0.396139 CCCAATGCTACATGCCCTGT 60.396 55.000 0.00 0.00 42.00 4.00
1786 2296 1.477553 CCAATGCTACATGCCCTGTT 58.522 50.000 0.00 0.00 42.00 3.16
1787 2297 2.653726 CCAATGCTACATGCCCTGTTA 58.346 47.619 0.00 0.00 42.00 2.41
1788 2298 3.023119 CCAATGCTACATGCCCTGTTAA 58.977 45.455 0.00 0.00 42.00 2.01
1789 2299 3.638160 CCAATGCTACATGCCCTGTTAAT 59.362 43.478 0.00 0.00 42.00 1.40
1790 2300 4.099881 CCAATGCTACATGCCCTGTTAATT 59.900 41.667 0.00 0.00 42.00 1.40
1791 2301 4.924305 ATGCTACATGCCCTGTTAATTG 57.076 40.909 0.00 0.00 42.00 2.32
1792 2302 3.961849 TGCTACATGCCCTGTTAATTGA 58.038 40.909 0.00 0.00 42.00 2.57
1793 2303 3.694072 TGCTACATGCCCTGTTAATTGAC 59.306 43.478 0.00 0.00 42.00 3.18
1794 2304 3.694072 GCTACATGCCCTGTTAATTGACA 59.306 43.478 2.77 2.77 39.39 3.58
1795 2305 4.438744 GCTACATGCCCTGTTAATTGACAC 60.439 45.833 0.00 0.00 39.39 3.67
1796 2306 3.495331 ACATGCCCTGTTAATTGACACA 58.505 40.909 0.00 0.00 32.90 3.72
1797 2307 3.507233 ACATGCCCTGTTAATTGACACAG 59.493 43.478 0.00 3.47 40.23 3.66
1805 2315 6.558771 CTGTTAATTGACACAGGAACATCA 57.441 37.500 0.00 0.00 37.37 3.07
1806 2316 6.951062 TGTTAATTGACACAGGAACATCAA 57.049 33.333 0.00 0.00 35.64 2.57
1807 2317 6.969366 TGTTAATTGACACAGGAACATCAAG 58.031 36.000 0.00 0.00 34.71 3.02
1808 2318 4.510038 AATTGACACAGGAACATCAAGC 57.490 40.909 0.00 0.00 34.71 4.01
1809 2319 2.636647 TGACACAGGAACATCAAGCA 57.363 45.000 0.00 0.00 0.00 3.91
1810 2320 3.144657 TGACACAGGAACATCAAGCAT 57.855 42.857 0.00 0.00 0.00 3.79
1811 2321 2.815503 TGACACAGGAACATCAAGCATG 59.184 45.455 0.00 0.00 38.64 4.06
1813 2323 4.002982 GACACAGGAACATCAAGCATGTA 58.997 43.478 0.00 0.00 45.77 2.29
1814 2324 4.005650 ACACAGGAACATCAAGCATGTAG 58.994 43.478 0.00 0.00 45.77 2.74
1815 2325 4.005650 CACAGGAACATCAAGCATGTAGT 58.994 43.478 0.00 0.00 45.77 2.73
1816 2326 5.178061 CACAGGAACATCAAGCATGTAGTA 58.822 41.667 0.00 0.00 45.77 1.82
1817 2327 5.063944 CACAGGAACATCAAGCATGTAGTAC 59.936 44.000 0.00 0.00 45.77 2.73
1818 2328 4.268644 CAGGAACATCAAGCATGTAGTACG 59.731 45.833 0.00 0.00 45.77 3.67
1819 2329 4.081642 AGGAACATCAAGCATGTAGTACGT 60.082 41.667 0.00 0.00 45.77 3.57
1820 2330 5.126545 AGGAACATCAAGCATGTAGTACGTA 59.873 40.000 0.00 0.00 45.77 3.57
1856 2366 2.562298 ACGACATGTTTGATGCCCAATT 59.438 40.909 0.00 0.00 34.23 2.32
1884 2394 0.736325 CCTGTTGACGCTAACTCCGG 60.736 60.000 0.00 0.00 0.00 5.14
1890 2400 1.274167 TGACGCTAACTCCGGTTCATT 59.726 47.619 0.00 0.00 36.92 2.57
1891 2401 1.659098 GACGCTAACTCCGGTTCATTG 59.341 52.381 0.00 0.00 36.92 2.82
1892 2402 1.274167 ACGCTAACTCCGGTTCATTGA 59.726 47.619 0.00 0.00 36.92 2.57
1934 2444 2.481289 AGTCTTACTGCCCTTTCTGC 57.519 50.000 0.00 0.00 0.00 4.26
2035 2545 5.687166 TGTCCCGTCTCTTGGTTATTTAT 57.313 39.130 0.00 0.00 0.00 1.40
2037 2547 7.185318 TGTCCCGTCTCTTGGTTATTTATAA 57.815 36.000 0.00 0.00 0.00 0.98
2038 2548 7.622713 TGTCCCGTCTCTTGGTTATTTATAAA 58.377 34.615 0.00 0.00 0.00 1.40
2039 2549 8.269317 TGTCCCGTCTCTTGGTTATTTATAAAT 58.731 33.333 14.86 14.86 0.00 1.40
2040 2550 9.117183 GTCCCGTCTCTTGGTTATTTATAAATT 57.883 33.333 15.64 1.43 0.00 1.82
2041 2551 9.689501 TCCCGTCTCTTGGTTATTTATAAATTT 57.310 29.630 15.64 0.00 0.00 1.82
2042 2552 9.946165 CCCGTCTCTTGGTTATTTATAAATTTC 57.054 33.333 15.64 9.22 0.00 2.17
2073 2583 2.834549 ACTTGAGTAGGCTGTATGCACT 59.165 45.455 0.00 0.00 45.15 4.40
2089 2599 1.539827 GCACTTAAGTTTCACGGCCAT 59.460 47.619 5.07 0.00 0.00 4.40
2107 2617 3.181483 GCCATGAGCTCCCAACAATTTAG 60.181 47.826 12.15 0.00 38.99 1.85
2108 2618 4.272489 CCATGAGCTCCCAACAATTTAGA 58.728 43.478 12.15 0.00 0.00 2.10
2111 2621 6.718454 CCATGAGCTCCCAACAATTTAGATAT 59.282 38.462 12.15 0.00 0.00 1.63
2140 2650 8.823220 AATAATAACCTTAACTGTCCTGCATT 57.177 30.769 0.00 0.00 0.00 3.56
2149 2659 1.667724 CTGTCCTGCATTCGGATGTTC 59.332 52.381 5.39 0.00 35.63 3.18
2155 2665 0.099436 GCATTCGGATGTTCCTGTGC 59.901 55.000 5.39 0.00 35.63 4.57
2160 2670 1.878775 GGATGTTCCTGTGCACTGC 59.121 57.895 19.41 5.68 32.53 4.40
2171 2681 0.317020 GTGCACTGCTCCGTTGAAAC 60.317 55.000 10.32 0.00 0.00 2.78
2179 2689 2.206750 GCTCCGTTGAAACAGTGTACA 58.793 47.619 0.00 0.00 0.00 2.90
2180 2690 2.033151 GCTCCGTTGAAACAGTGTACAC 60.033 50.000 18.56 18.56 0.00 2.90
2212 2724 9.290483 GTTTAAGAGCTTAATGCAGGTTATTTC 57.710 33.333 3.74 0.00 45.94 2.17
2229 2741 3.591196 TTTCCCTGCATTTGGATTTCG 57.409 42.857 1.08 0.00 0.00 3.46
2236 2748 1.987770 GCATTTGGATTTCGCTGTGTG 59.012 47.619 0.00 0.00 0.00 3.82
2259 2771 9.062524 TGTGCTGTTTTGTTGAAATACTATACT 57.937 29.630 0.00 0.00 0.00 2.12
2283 2796 8.107095 ACTTATTGGGTTTAAGAGCTTCATACA 58.893 33.333 0.00 0.00 32.25 2.29
2284 2797 8.871629 TTATTGGGTTTAAGAGCTTCATACAA 57.128 30.769 0.00 0.00 0.00 2.41
2313 2826 6.479990 GTGGCCTGGAAAAGAATTTAATATGC 59.520 38.462 3.32 0.00 37.28 3.14
2325 2838 6.987992 AGAATTTAATATGCCAGCACCATTTG 59.012 34.615 0.00 0.00 0.00 2.32
2327 2840 6.782082 TTTAATATGCCAGCACCATTTGTA 57.218 33.333 0.00 0.00 0.00 2.41
2376 2889 7.223582 CAGTAAGCTCACTAAGTAATGATGTGG 59.776 40.741 0.00 0.00 0.00 4.17
2377 2890 4.446371 AGCTCACTAAGTAATGATGTGGC 58.554 43.478 0.00 0.00 0.00 5.01
2396 2909 5.046376 TGTGGCTGTGATCTCAAATCTCTTA 60.046 40.000 0.00 0.00 0.00 2.10
2400 2913 5.752955 GCTGTGATCTCAAATCTCTTAGGAC 59.247 44.000 0.00 0.00 0.00 3.85
2498 3012 4.757149 GGACCCAACTATGAATCACTATGC 59.243 45.833 0.00 0.00 0.00 3.14
2505 3221 8.715998 CCAACTATGAATCACTATGCAATCTAC 58.284 37.037 0.00 0.00 0.00 2.59
2520 3236 4.620609 GCAATCTACGTGCTATCATCAGAG 59.379 45.833 0.00 0.00 39.00 3.35
2530 3246 4.347292 TGCTATCATCAGAGCCTCAGATTT 59.653 41.667 0.00 0.00 37.94 2.17
2598 3320 0.109086 CTGTGCTCCCAGTCGTACTG 60.109 60.000 7.72 7.72 45.53 2.74
2625 3373 6.314152 GCTACTACTCATCTACGCTCATGATA 59.686 42.308 0.00 0.00 0.00 2.15
2662 3411 9.661187 CATGTTCTAAGTTCTAATTGCATCATC 57.339 33.333 0.00 0.00 0.00 2.92
2722 3471 9.454859 CTTGGGAGAAACTCTTATTGAACTAAT 57.545 33.333 0.00 0.00 0.00 1.73
3038 3789 2.675056 GCTGGTTGCTCTGCTGACG 61.675 63.158 0.00 0.00 38.95 4.35
3056 3807 2.334653 GAGGCTGGAGCGATCTCG 59.665 66.667 0.00 0.00 43.26 4.04
3077 3828 2.037381 GGGTTCTTCTTCGAAGACCACT 59.963 50.000 27.03 0.00 34.32 4.00
3166 3917 3.322211 TCCCGTGTCATGAAATAACGT 57.678 42.857 15.83 0.00 0.00 3.99
3209 3960 1.059913 AGGGCTTGTTGCTGTCTAGT 58.940 50.000 0.00 0.00 42.39 2.57
3212 3963 3.264450 AGGGCTTGTTGCTGTCTAGTATT 59.736 43.478 0.00 0.00 42.39 1.89
3215 3966 4.938226 GGCTTGTTGCTGTCTAGTATTTCT 59.062 41.667 0.00 0.00 42.39 2.52
3216 3967 6.106673 GGCTTGTTGCTGTCTAGTATTTCTA 58.893 40.000 0.00 0.00 42.39 2.10
3217 3968 6.594159 GGCTTGTTGCTGTCTAGTATTTCTAA 59.406 38.462 0.00 0.00 42.39 2.10
3219 3970 8.669243 GCTTGTTGCTGTCTAGTATTTCTAAAT 58.331 33.333 0.00 0.00 38.95 1.40
3220 3971 9.979270 CTTGTTGCTGTCTAGTATTTCTAAATG 57.021 33.333 0.00 0.00 0.00 2.32
3221 3972 9.502091 TTGTTGCTGTCTAGTATTTCTAAATGT 57.498 29.630 0.00 0.00 0.00 2.71
3222 3973 9.151471 TGTTGCTGTCTAGTATTTCTAAATGTC 57.849 33.333 0.00 0.00 0.00 3.06
3223 3974 9.372369 GTTGCTGTCTAGTATTTCTAAATGTCT 57.628 33.333 0.00 0.69 0.00 3.41
3225 3976 9.944376 TGCTGTCTAGTATTTCTAAATGTCTTT 57.056 29.630 0.00 0.00 0.00 2.52
3255 4024 8.641499 TTGGAAATAAATCAAATTATGTCGGC 57.359 30.769 0.00 0.00 32.48 5.54
3276 4045 4.549458 GCGATATCATCAAACCCCAAATG 58.451 43.478 3.12 0.00 0.00 2.32
3296 4065 6.500684 AATGACTGTCGTTCTTTTGCATAT 57.499 33.333 9.40 0.00 0.00 1.78
3297 4066 7.609760 AATGACTGTCGTTCTTTTGCATATA 57.390 32.000 9.40 0.00 0.00 0.86
3306 4075 9.478019 GTCGTTCTTTTGCATATATATACATGC 57.522 33.333 17.37 17.37 46.21 4.06
3325 4094 1.751351 GCCACTCTTTATTGCTTCCCC 59.249 52.381 0.00 0.00 0.00 4.81
3341 4110 1.204113 CCCCTGCTGGAAGAGAACCT 61.204 60.000 11.88 0.00 34.07 3.50
3385 4154 4.090642 CAGTTTCAGTCTAAGTCGTGCATC 59.909 45.833 0.00 0.00 0.00 3.91
3386 4155 2.544480 TCAGTCTAAGTCGTGCATCG 57.456 50.000 0.00 0.00 41.41 3.84
3410 4179 5.822278 CAGAATCTGCAGATCAATTTCTGG 58.178 41.667 31.59 20.64 42.78 3.86
3412 4181 5.357314 AGAATCTGCAGATCAATTTCTGGTG 59.643 40.000 28.83 0.00 42.78 4.17
3418 4187 4.460382 GCAGATCAATTTCTGGTGAAGGAA 59.540 41.667 8.80 0.00 42.78 3.36
3422 4191 2.554032 CAATTTCTGGTGAAGGAAGCGT 59.446 45.455 0.00 0.00 33.28 5.07
3423 4192 2.341846 TTTCTGGTGAAGGAAGCGTT 57.658 45.000 0.00 0.00 33.28 4.84
3506 4275 1.675310 CCATTGGTGCCTTCGCTGA 60.675 57.895 0.00 0.00 35.36 4.26
3507 4276 1.243342 CCATTGGTGCCTTCGCTGAA 61.243 55.000 0.00 0.00 35.36 3.02
3534 4303 2.032071 CCGTGCGGGAAGTCCTTT 59.968 61.111 2.15 0.00 38.47 3.11
3536 4305 1.004918 CGTGCGGGAAGTCCTTTCT 60.005 57.895 0.00 0.00 36.03 2.52
3602 4371 4.099170 CGTCGCGTCGTCTTCCCT 62.099 66.667 17.43 0.00 0.00 4.20
3729 4498 1.296755 TGTCCTCGTCGTTCTCCTCG 61.297 60.000 0.00 0.00 0.00 4.63
3933 4702 1.374125 CATGTCTGGACGGTGCGAA 60.374 57.895 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.495155 TGTGCACAGCCATAGTGAAT 57.505 45.000 17.42 0.00 39.30 2.57
10 11 0.606130 TGACGAATGTGCACAGCCAT 60.606 50.000 25.84 10.84 0.00 4.40
20 21 6.367695 TCTCAATCAAAATACGTGACGAATGT 59.632 34.615 13.70 0.00 0.00 2.71
63 64 0.439985 CAGACAACGCAACTGGATCG 59.560 55.000 0.00 0.00 0.00 3.69
75 76 6.200854 CCTTACAAAAATTGCTTCCAGACAAC 59.799 38.462 0.00 0.00 0.00 3.32
80 81 3.996363 GGCCTTACAAAAATTGCTTCCAG 59.004 43.478 0.00 0.00 0.00 3.86
131 132 1.072331 ACGCCCAAGGGATATGATCAC 59.928 52.381 9.92 0.00 37.50 3.06
132 133 1.434188 ACGCCCAAGGGATATGATCA 58.566 50.000 9.92 0.00 37.50 2.92
135 136 1.283613 ACAAACGCCCAAGGGATATGA 59.716 47.619 9.92 0.00 37.50 2.15
146 147 3.938289 TTATTTACCCAACAAACGCCC 57.062 42.857 0.00 0.00 0.00 6.13
210 212 8.179509 TGGACAGAAGGCTAATAATCTACTAC 57.820 38.462 0.00 0.00 0.00 2.73
213 215 7.902087 AGATGGACAGAAGGCTAATAATCTAC 58.098 38.462 0.00 0.00 0.00 2.59
214 216 7.179338 GGAGATGGACAGAAGGCTAATAATCTA 59.821 40.741 0.00 0.00 0.00 1.98
215 217 6.013812 GGAGATGGACAGAAGGCTAATAATCT 60.014 42.308 0.00 0.00 0.00 2.40
216 218 6.169800 GGAGATGGACAGAAGGCTAATAATC 58.830 44.000 0.00 0.00 0.00 1.75
217 219 5.013599 GGGAGATGGACAGAAGGCTAATAAT 59.986 44.000 0.00 0.00 0.00 1.28
218 220 4.348168 GGGAGATGGACAGAAGGCTAATAA 59.652 45.833 0.00 0.00 0.00 1.40
220 222 2.708325 GGGAGATGGACAGAAGGCTAAT 59.292 50.000 0.00 0.00 0.00 1.73
221 223 2.119495 GGGAGATGGACAGAAGGCTAA 58.881 52.381 0.00 0.00 0.00 3.09
237 245 6.038714 GCAATGTAGAAGTGATAAAAGGGGAG 59.961 42.308 0.00 0.00 0.00 4.30
286 300 1.520590 CACACCACCGCAAAATTTTCG 59.479 47.619 0.00 7.93 0.00 3.46
291 305 2.887783 TCATAACACACCACCGCAAAAT 59.112 40.909 0.00 0.00 0.00 1.82
295 309 1.968704 TTTCATAACACACCACCGCA 58.031 45.000 0.00 0.00 0.00 5.69
296 310 2.292292 ACTTTTCATAACACACCACCGC 59.708 45.455 0.00 0.00 0.00 5.68
297 311 4.753107 AGTACTTTTCATAACACACCACCG 59.247 41.667 0.00 0.00 0.00 4.94
299 313 5.180680 GGGAGTACTTTTCATAACACACCAC 59.819 44.000 0.00 0.00 0.00 4.16
300 314 5.072600 AGGGAGTACTTTTCATAACACACCA 59.927 40.000 0.00 0.00 0.00 4.17
302 316 5.642491 GGAGGGAGTACTTTTCATAACACAC 59.358 44.000 0.00 0.00 0.00 3.82
303 317 5.568023 CGGAGGGAGTACTTTTCATAACACA 60.568 44.000 0.00 0.00 0.00 3.72
304 318 4.868734 CGGAGGGAGTACTTTTCATAACAC 59.131 45.833 0.00 0.00 0.00 3.32
305 319 4.529377 ACGGAGGGAGTACTTTTCATAACA 59.471 41.667 0.00 0.00 0.00 2.41
309 323 3.055312 GGAACGGAGGGAGTACTTTTCAT 60.055 47.826 0.00 0.00 0.00 2.57
310 324 2.301009 GGAACGGAGGGAGTACTTTTCA 59.699 50.000 0.00 0.00 0.00 2.69
311 325 2.301009 TGGAACGGAGGGAGTACTTTTC 59.699 50.000 0.00 0.00 0.00 2.29
312 326 2.332117 TGGAACGGAGGGAGTACTTTT 58.668 47.619 0.00 0.00 0.00 2.27
313 327 2.019807 TGGAACGGAGGGAGTACTTT 57.980 50.000 0.00 0.00 0.00 2.66
314 328 2.249309 ATGGAACGGAGGGAGTACTT 57.751 50.000 0.00 0.00 0.00 2.24
315 329 3.614568 ATATGGAACGGAGGGAGTACT 57.385 47.619 0.00 0.00 0.00 2.73
316 330 4.831710 AGTAATATGGAACGGAGGGAGTAC 59.168 45.833 0.00 0.00 0.00 2.73
317 331 5.070823 AGTAATATGGAACGGAGGGAGTA 57.929 43.478 0.00 0.00 0.00 2.59
318 332 3.896272 GAGTAATATGGAACGGAGGGAGT 59.104 47.826 0.00 0.00 0.00 3.85
319 333 3.057456 CGAGTAATATGGAACGGAGGGAG 60.057 52.174 0.00 0.00 0.00 4.30
320 334 2.889045 CGAGTAATATGGAACGGAGGGA 59.111 50.000 0.00 0.00 0.00 4.20
321 335 2.626743 ACGAGTAATATGGAACGGAGGG 59.373 50.000 0.00 0.00 0.00 4.30
322 336 4.049186 CAACGAGTAATATGGAACGGAGG 58.951 47.826 0.00 0.00 0.00 4.30
323 337 3.489785 GCAACGAGTAATATGGAACGGAG 59.510 47.826 0.00 0.00 0.00 4.63
324 338 3.131577 AGCAACGAGTAATATGGAACGGA 59.868 43.478 0.00 0.00 0.00 4.69
325 339 3.245284 CAGCAACGAGTAATATGGAACGG 59.755 47.826 0.00 0.00 0.00 4.44
326 340 4.109766 TCAGCAACGAGTAATATGGAACG 58.890 43.478 0.00 0.00 0.00 3.95
327 341 6.604735 AATCAGCAACGAGTAATATGGAAC 57.395 37.500 0.00 0.00 0.00 3.62
328 342 7.985184 ACTAAATCAGCAACGAGTAATATGGAA 59.015 33.333 0.00 0.00 0.00 3.53
329 343 7.497595 ACTAAATCAGCAACGAGTAATATGGA 58.502 34.615 0.00 0.00 0.00 3.41
330 344 7.715265 ACTAAATCAGCAACGAGTAATATGG 57.285 36.000 0.00 0.00 0.00 2.74
331 345 9.244799 TGTACTAAATCAGCAACGAGTAATATG 57.755 33.333 0.00 0.00 0.00 1.78
332 346 9.811995 TTGTACTAAATCAGCAACGAGTAATAT 57.188 29.630 0.00 0.00 0.00 1.28
333 347 9.642327 TTTGTACTAAATCAGCAACGAGTAATA 57.358 29.630 0.00 0.00 0.00 0.98
334 348 8.542497 TTTGTACTAAATCAGCAACGAGTAAT 57.458 30.769 0.00 0.00 0.00 1.89
335 349 7.949903 TTTGTACTAAATCAGCAACGAGTAA 57.050 32.000 0.00 0.00 0.00 2.24
336 350 7.064134 CCATTTGTACTAAATCAGCAACGAGTA 59.936 37.037 0.00 0.00 0.00 2.59
337 351 6.128282 CCATTTGTACTAAATCAGCAACGAGT 60.128 38.462 0.00 0.00 0.00 4.18
338 352 6.128282 ACCATTTGTACTAAATCAGCAACGAG 60.128 38.462 0.00 0.00 0.00 4.18
339 353 5.703592 ACCATTTGTACTAAATCAGCAACGA 59.296 36.000 0.00 0.00 0.00 3.85
340 354 5.938322 ACCATTTGTACTAAATCAGCAACG 58.062 37.500 0.00 0.00 0.00 4.10
341 355 9.855021 ATAAACCATTTGTACTAAATCAGCAAC 57.145 29.630 0.00 0.00 0.00 4.17
352 366 8.250332 CCAATGCAAGTATAAACCATTTGTACT 58.750 33.333 5.25 5.25 45.62 2.73
353 367 8.032451 ACCAATGCAAGTATAAACCATTTGTAC 58.968 33.333 0.00 1.26 37.46 2.90
354 368 8.128322 ACCAATGCAAGTATAAACCATTTGTA 57.872 30.769 0.00 0.00 0.00 2.41
355 369 7.003402 ACCAATGCAAGTATAAACCATTTGT 57.997 32.000 0.00 0.00 0.00 2.83
356 370 6.534793 GGACCAATGCAAGTATAAACCATTTG 59.465 38.462 0.00 0.00 0.00 2.32
357 371 6.440328 AGGACCAATGCAAGTATAAACCATTT 59.560 34.615 0.00 0.00 0.00 2.32
358 372 5.957774 AGGACCAATGCAAGTATAAACCATT 59.042 36.000 0.00 0.00 0.00 3.16
359 373 5.518865 AGGACCAATGCAAGTATAAACCAT 58.481 37.500 0.00 0.00 0.00 3.55
360 374 4.929479 AGGACCAATGCAAGTATAAACCA 58.071 39.130 0.00 0.00 0.00 3.67
361 375 5.007332 CGTAGGACCAATGCAAGTATAAACC 59.993 44.000 0.00 0.00 0.00 3.27
362 376 5.583457 ACGTAGGACCAATGCAAGTATAAAC 59.417 40.000 0.00 0.00 0.00 2.01
363 377 5.583061 CACGTAGGACCAATGCAAGTATAAA 59.417 40.000 0.00 0.00 0.00 1.40
364 378 5.113383 CACGTAGGACCAATGCAAGTATAA 58.887 41.667 0.00 0.00 0.00 0.98
372 386 0.108138 AGAGCACGTAGGACCAATGC 60.108 55.000 0.00 0.00 36.52 3.56
396 410 2.413796 CACGTAGGACTATGCGCAAAAA 59.586 45.455 17.11 1.52 0.00 1.94
397 411 1.996898 CACGTAGGACTATGCGCAAAA 59.003 47.619 17.11 4.61 0.00 2.44
398 412 1.635844 CACGTAGGACTATGCGCAAA 58.364 50.000 17.11 0.00 0.00 3.68
399 413 0.804544 GCACGTAGGACTATGCGCAA 60.805 55.000 17.11 2.72 32.17 4.85
400 414 1.226859 GCACGTAGGACTATGCGCA 60.227 57.895 14.96 14.96 32.17 6.09
401 415 0.935366 GAGCACGTAGGACTATGCGC 60.935 60.000 0.00 0.00 42.98 6.09
402 416 0.663688 AGAGCACGTAGGACTATGCG 59.336 55.000 0.00 0.00 42.98 4.73
403 417 2.860735 CAAAGAGCACGTAGGACTATGC 59.139 50.000 0.00 0.00 38.39 3.14
404 418 4.371855 TCAAAGAGCACGTAGGACTATG 57.628 45.455 0.00 0.00 0.00 2.23
405 419 5.599999 AATCAAAGAGCACGTAGGACTAT 57.400 39.130 0.00 0.00 0.00 2.12
406 420 5.047590 TCAAATCAAAGAGCACGTAGGACTA 60.048 40.000 0.00 0.00 0.00 2.59
407 421 3.963428 AATCAAAGAGCACGTAGGACT 57.037 42.857 0.00 0.00 0.00 3.85
408 422 3.994392 TCAAATCAAAGAGCACGTAGGAC 59.006 43.478 0.00 0.00 0.00 3.85
409 423 4.265904 TCAAATCAAAGAGCACGTAGGA 57.734 40.909 0.00 0.00 0.00 2.94
410 424 5.356882 TTTCAAATCAAAGAGCACGTAGG 57.643 39.130 0.00 0.00 0.00 3.18
411 425 7.858052 AATTTTCAAATCAAAGAGCACGTAG 57.142 32.000 0.00 0.00 0.00 3.51
412 426 8.134895 AGAAATTTTCAAATCAAAGAGCACGTA 58.865 29.630 11.53 0.00 0.00 3.57
413 427 6.980397 AGAAATTTTCAAATCAAAGAGCACGT 59.020 30.769 11.53 0.00 0.00 4.49
414 428 7.398834 AGAAATTTTCAAATCAAAGAGCACG 57.601 32.000 11.53 0.00 0.00 5.34
415 429 8.606602 ACAAGAAATTTTCAAATCAAAGAGCAC 58.393 29.630 11.53 0.00 0.00 4.40
416 430 8.721019 ACAAGAAATTTTCAAATCAAAGAGCA 57.279 26.923 11.53 0.00 0.00 4.26
462 476 5.049680 TGAACAATTTTACAGCGAAGGAGAC 60.050 40.000 0.00 0.00 0.00 3.36
467 481 7.670916 TGTTTTTGAACAATTTTACAGCGAAG 58.329 30.769 0.00 0.00 0.00 3.79
486 500 4.097286 ACCGTTTGCTACTCACATGTTTTT 59.903 37.500 0.00 0.00 0.00 1.94
506 520 2.083835 ATAATCTCCGCCGACCACCG 62.084 60.000 0.00 0.00 38.18 4.94
509 523 2.046938 GGATAATCTCCGCCGACCA 58.953 57.895 0.00 0.00 33.29 4.02
510 524 4.990288 GGATAATCTCCGCCGACC 57.010 61.111 0.00 0.00 33.29 4.79
517 531 5.574970 ATGACCTTCCTTGGATAATCTCC 57.425 43.478 0.00 0.00 45.19 3.71
519 533 6.944862 GCATAATGACCTTCCTTGGATAATCT 59.055 38.462 0.00 0.00 0.00 2.40
526 541 2.355756 CACGCATAATGACCTTCCTTGG 59.644 50.000 0.00 0.00 0.00 3.61
563 578 1.375396 CGAATCCACCGCCTTCACA 60.375 57.895 0.00 0.00 0.00 3.58
574 589 2.506217 GCGACGACTGCGAATCCA 60.506 61.111 0.00 0.00 41.64 3.41
606 621 3.764237 AAAAAGTAGAAGGCGACCTCA 57.236 42.857 0.00 0.00 30.89 3.86
630 645 2.737039 GCGACCTGCCTTGTTTCAAAAA 60.737 45.455 0.00 0.00 37.76 1.94
631 646 1.202359 GCGACCTGCCTTGTTTCAAAA 60.202 47.619 0.00 0.00 37.76 2.44
632 647 0.383949 GCGACCTGCCTTGTTTCAAA 59.616 50.000 0.00 0.00 37.76 2.69
633 648 2.029743 GCGACCTGCCTTGTTTCAA 58.970 52.632 0.00 0.00 37.76 2.69
634 649 3.744559 GCGACCTGCCTTGTTTCA 58.255 55.556 0.00 0.00 37.76 2.69
643 658 1.739067 AAATGTAGAAGGCGACCTGC 58.261 50.000 0.00 0.00 45.38 4.85
644 659 3.458189 CCTAAATGTAGAAGGCGACCTG 58.542 50.000 0.00 0.00 32.13 4.00
732 753 2.681848 GTCAGGCCTCAGATCACAAATG 59.318 50.000 0.00 0.00 0.00 2.32
814 835 1.768349 TCCCGTGTGGAGACTCTCT 59.232 57.895 6.02 0.00 38.61 3.10
815 836 4.417641 TCCCGTGTGGAGACTCTC 57.582 61.111 1.74 0.00 38.61 3.20
830 1124 4.554163 CGTTCCACTCACGTCTCC 57.446 61.111 0.00 0.00 32.80 3.71
853 1147 3.712881 GCGTGGGCGTGACAAGTC 61.713 66.667 0.00 0.00 40.81 3.01
971 1276 2.158928 ACGGGCGCCTTGTATTTATACA 60.159 45.455 28.56 0.00 41.19 2.29
996 1301 1.664151 GAAAAAGCGGTACCCATCTCG 59.336 52.381 6.25 0.00 0.00 4.04
1005 1310 1.553704 GAGGAGGAGGAAAAAGCGGTA 59.446 52.381 0.00 0.00 0.00 4.02
1015 1320 0.930726 GAAGAGGAGGAGGAGGAGGA 59.069 60.000 0.00 0.00 0.00 3.71
1016 1321 0.105709 GGAAGAGGAGGAGGAGGAGG 60.106 65.000 0.00 0.00 0.00 4.30
1017 1322 0.633921 TGGAAGAGGAGGAGGAGGAG 59.366 60.000 0.00 0.00 0.00 3.69
1018 1323 0.336737 GTGGAAGAGGAGGAGGAGGA 59.663 60.000 0.00 0.00 0.00 3.71
1019 1324 0.689412 GGTGGAAGAGGAGGAGGAGG 60.689 65.000 0.00 0.00 0.00 4.30
1020 1325 0.689412 GGGTGGAAGAGGAGGAGGAG 60.689 65.000 0.00 0.00 0.00 3.69
1123 1435 3.369388 GGGAGAGGGGAGAGGGGT 61.369 72.222 0.00 0.00 0.00 4.95
1132 1444 2.687909 GATGGGGAGAGGGGAGAGGG 62.688 70.000 0.00 0.00 0.00 4.30
1133 1445 1.152139 GATGGGGAGAGGGGAGAGG 60.152 68.421 0.00 0.00 0.00 3.69
1134 1446 0.267356 AAGATGGGGAGAGGGGAGAG 59.733 60.000 0.00 0.00 0.00 3.20
1135 1447 0.725133 AAAGATGGGGAGAGGGGAGA 59.275 55.000 0.00 0.00 0.00 3.71
1136 1448 1.135960 GAAAGATGGGGAGAGGGGAG 58.864 60.000 0.00 0.00 0.00 4.30
1137 1449 0.725133 AGAAAGATGGGGAGAGGGGA 59.275 55.000 0.00 0.00 0.00 4.81
1138 1450 1.135960 GAGAAAGATGGGGAGAGGGG 58.864 60.000 0.00 0.00 0.00 4.79
1139 1451 1.488393 GTGAGAAAGATGGGGAGAGGG 59.512 57.143 0.00 0.00 0.00 4.30
1140 1452 1.488393 GGTGAGAAAGATGGGGAGAGG 59.512 57.143 0.00 0.00 0.00 3.69
1141 1453 1.137872 CGGTGAGAAAGATGGGGAGAG 59.862 57.143 0.00 0.00 0.00 3.20
1146 1458 1.858091 CGATCGGTGAGAAAGATGGG 58.142 55.000 7.38 0.00 0.00 4.00
1153 1465 2.363795 AGGGGCGATCGGTGAGAA 60.364 61.111 18.30 0.00 0.00 2.87
1178 1490 3.482783 GAGTTCAGCGGCGTCTGC 61.483 66.667 21.12 11.65 41.71 4.26
1197 1509 8.514594 TCTTATCACAGACTAAAATTTGCAAGG 58.485 33.333 0.00 0.00 0.00 3.61
1208 1520 7.093727 CCCTTCTCAGTTCTTATCACAGACTAA 60.094 40.741 0.00 0.00 0.00 2.24
1209 1521 6.378564 CCCTTCTCAGTTCTTATCACAGACTA 59.621 42.308 0.00 0.00 0.00 2.59
1210 1522 5.186797 CCCTTCTCAGTTCTTATCACAGACT 59.813 44.000 0.00 0.00 0.00 3.24
1229 1541 0.466922 CCATCATCCACAGCCCCTTC 60.467 60.000 0.00 0.00 0.00 3.46
1236 1548 5.338219 GGGATCTATTCTCCATCATCCACAG 60.338 48.000 0.00 0.00 34.24 3.66
1239 1551 4.533707 GTGGGATCTATTCTCCATCATCCA 59.466 45.833 0.00 0.00 34.24 3.41
1285 1603 1.090052 GGGATGGCGGAAAGAAGACG 61.090 60.000 0.00 0.00 0.00 4.18
1297 1615 2.251818 TGCTCTACTCATAGGGATGGC 58.748 52.381 0.00 0.00 29.10 4.40
1399 1719 7.038154 TGGGTACAGATTCAAAACTTTCTTG 57.962 36.000 0.00 0.00 0.00 3.02
1406 1726 6.590234 AGGATTTGGGTACAGATTCAAAAC 57.410 37.500 0.00 0.00 33.62 2.43
1442 1762 1.148157 CCGTAGCGCATCCAGAGTTG 61.148 60.000 11.47 0.00 0.00 3.16
1457 1777 3.460103 GATCCTTAATTTCACGGCCGTA 58.540 45.455 33.70 17.44 0.00 4.02
1482 1802 4.326504 ACAACTTTTGAATCCCTTGCAG 57.673 40.909 0.00 0.00 0.00 4.41
1494 1821 3.749609 CCGTAGTCCCCTAACAACTTTTG 59.250 47.826 0.00 0.00 0.00 2.44
1495 1822 3.244665 CCCGTAGTCCCCTAACAACTTTT 60.245 47.826 0.00 0.00 0.00 2.27
1525 1852 2.614259 ACCTGGCTAGTAGATCCATGG 58.386 52.381 4.97 4.97 0.00 3.66
1650 2096 5.808030 ACATAAAACTTGAACCAAAACCACG 59.192 36.000 0.00 0.00 0.00 4.94
1682 2128 8.561738 ACAGTAGTAGTTGGACCAAATATTTG 57.438 34.615 16.84 19.40 37.90 2.32
1740 2250 7.007367 GCATCAAACATGTCGTTACAAATACAG 59.993 37.037 0.00 0.00 39.58 2.74
1741 2251 6.799441 GCATCAAACATGTCGTTACAAATACA 59.201 34.615 0.00 0.00 39.58 2.29
1742 2252 6.250527 GGCATCAAACATGTCGTTACAAATAC 59.749 38.462 0.00 0.00 39.58 1.89
1743 2253 6.318628 GGCATCAAACATGTCGTTACAAATA 58.681 36.000 0.00 0.00 39.58 1.40
1744 2254 5.160641 GGCATCAAACATGTCGTTACAAAT 58.839 37.500 0.00 0.00 39.58 2.32
1745 2255 4.541779 GGCATCAAACATGTCGTTACAAA 58.458 39.130 0.00 0.00 39.58 2.83
1746 2256 3.057876 GGGCATCAAACATGTCGTTACAA 60.058 43.478 0.00 0.00 39.58 2.41
1747 2257 2.486203 GGGCATCAAACATGTCGTTACA 59.514 45.455 0.00 0.00 36.59 2.41
1748 2258 2.486203 TGGGCATCAAACATGTCGTTAC 59.514 45.455 0.00 0.00 36.59 2.50
1749 2259 2.784347 TGGGCATCAAACATGTCGTTA 58.216 42.857 0.00 0.00 36.59 3.18
1750 2260 1.614996 TGGGCATCAAACATGTCGTT 58.385 45.000 0.00 0.00 40.50 3.85
1751 2261 1.614996 TTGGGCATCAAACATGTCGT 58.385 45.000 0.00 0.00 31.46 4.34
1752 2262 2.532235 CATTGGGCATCAAACATGTCG 58.468 47.619 0.00 0.00 39.05 4.35
1753 2263 2.273557 GCATTGGGCATCAAACATGTC 58.726 47.619 0.00 0.00 43.97 3.06
1754 2264 2.389962 GCATTGGGCATCAAACATGT 57.610 45.000 0.00 0.00 43.97 3.21
1772 2282 3.694072 TGTCAATTAACAGGGCATGTAGC 59.306 43.478 4.75 0.00 43.00 3.58
1773 2283 4.699735 TGTGTCAATTAACAGGGCATGTAG 59.300 41.667 4.75 0.00 43.00 2.74
1774 2284 4.657013 TGTGTCAATTAACAGGGCATGTA 58.343 39.130 4.75 0.00 43.00 2.29
1775 2285 3.495331 TGTGTCAATTAACAGGGCATGT 58.505 40.909 0.00 0.00 46.97 3.21
1776 2286 4.100707 CTGTGTCAATTAACAGGGCATG 57.899 45.455 0.00 0.00 40.12 4.06
1782 2292 6.558771 TGATGTTCCTGTGTCAATTAACAG 57.441 37.500 7.72 7.72 42.83 3.16
1783 2293 6.514870 GCTTGATGTTCCTGTGTCAATTAACA 60.515 38.462 0.00 0.00 30.97 2.41
1784 2294 5.858581 GCTTGATGTTCCTGTGTCAATTAAC 59.141 40.000 0.00 0.00 30.97 2.01
1785 2295 5.534278 TGCTTGATGTTCCTGTGTCAATTAA 59.466 36.000 0.00 0.00 30.97 1.40
1786 2296 5.069318 TGCTTGATGTTCCTGTGTCAATTA 58.931 37.500 0.00 0.00 30.97 1.40
1787 2297 3.890756 TGCTTGATGTTCCTGTGTCAATT 59.109 39.130 0.00 0.00 30.97 2.32
1788 2298 3.489355 TGCTTGATGTTCCTGTGTCAAT 58.511 40.909 0.00 0.00 30.97 2.57
1789 2299 2.929641 TGCTTGATGTTCCTGTGTCAA 58.070 42.857 0.00 0.00 0.00 3.18
1790 2300 2.636647 TGCTTGATGTTCCTGTGTCA 57.363 45.000 0.00 0.00 0.00 3.58
1791 2301 2.816087 ACATGCTTGATGTTCCTGTGTC 59.184 45.455 6.60 0.00 43.20 3.67
1792 2302 2.867624 ACATGCTTGATGTTCCTGTGT 58.132 42.857 6.60 0.00 43.20 3.72
1793 2303 4.005650 ACTACATGCTTGATGTTCCTGTG 58.994 43.478 6.60 0.00 43.20 3.66
1794 2304 4.292186 ACTACATGCTTGATGTTCCTGT 57.708 40.909 6.60 0.00 43.20 4.00
1795 2305 4.268644 CGTACTACATGCTTGATGTTCCTG 59.731 45.833 6.60 0.00 43.20 3.86
1796 2306 4.081642 ACGTACTACATGCTTGATGTTCCT 60.082 41.667 6.60 0.00 43.20 3.36
1797 2307 4.181578 ACGTACTACATGCTTGATGTTCC 58.818 43.478 6.60 0.00 43.20 3.62
1798 2308 6.034591 ACTACGTACTACATGCTTGATGTTC 58.965 40.000 6.60 2.35 43.20 3.18
1799 2309 5.962433 ACTACGTACTACATGCTTGATGTT 58.038 37.500 6.60 0.00 43.20 2.71
1800 2310 6.318144 AGTACTACGTACTACATGCTTGATGT 59.682 38.462 6.60 6.97 45.99 3.06
1801 2311 6.633234 CAGTACTACGTACTACATGCTTGATG 59.367 42.308 6.60 1.32 46.08 3.07
1802 2312 6.318144 ACAGTACTACGTACTACATGCTTGAT 59.682 38.462 6.60 0.00 46.08 2.57
1803 2313 5.645067 ACAGTACTACGTACTACATGCTTGA 59.355 40.000 6.60 0.00 46.08 3.02
1804 2314 5.877031 ACAGTACTACGTACTACATGCTTG 58.123 41.667 12.88 0.00 46.08 4.01
1805 2315 7.798596 ATACAGTACTACGTACTACATGCTT 57.201 36.000 12.88 0.00 46.08 3.91
1806 2316 7.798596 AATACAGTACTACGTACTACATGCT 57.201 36.000 12.88 0.00 46.08 3.79
1807 2317 7.912250 ACAAATACAGTACTACGTACTACATGC 59.088 37.037 12.88 0.00 46.08 4.06
1811 2321 9.409949 CGTTACAAATACAGTACTACGTACTAC 57.590 37.037 6.38 0.00 46.08 2.73
1812 2322 9.361315 TCGTTACAAATACAGTACTACGTACTA 57.639 33.333 6.38 0.00 46.08 1.82
1814 2324 7.955324 TGTCGTTACAAATACAGTACTACGTAC 59.045 37.037 0.00 0.84 34.46 3.67
1815 2325 8.024146 TGTCGTTACAAATACAGTACTACGTA 57.976 34.615 0.00 0.00 31.32 3.57
1816 2326 6.898041 TGTCGTTACAAATACAGTACTACGT 58.102 36.000 0.00 0.00 31.32 3.57
1817 2327 7.482743 ACATGTCGTTACAAATACAGTACTACG 59.517 37.037 0.00 0.00 39.58 3.51
1818 2328 8.679288 ACATGTCGTTACAAATACAGTACTAC 57.321 34.615 0.00 0.00 39.58 2.73
1819 2329 9.695526 AAACATGTCGTTACAAATACAGTACTA 57.304 29.630 0.00 0.00 39.58 1.82
1820 2330 8.492748 CAAACATGTCGTTACAAATACAGTACT 58.507 33.333 0.00 0.00 39.58 2.73
1856 2366 0.391130 GCGTCAACAGGGCATGTAGA 60.391 55.000 4.75 0.00 43.00 2.59
1884 2394 6.976925 CAGATAGCCCAAAGAATTCAATGAAC 59.023 38.462 8.44 2.20 0.00 3.18
1890 2400 3.949754 CTGCAGATAGCCCAAAGAATTCA 59.050 43.478 8.42 0.00 44.83 2.57
1891 2401 3.243334 GCTGCAGATAGCCCAAAGAATTC 60.243 47.826 20.43 0.00 44.83 2.17
1892 2402 2.692041 GCTGCAGATAGCCCAAAGAATT 59.308 45.455 20.43 0.00 44.83 2.17
1934 2444 5.490213 GTGAACAACTTCTTCACTTGTACG 58.510 41.667 3.39 0.00 42.85 3.67
2045 2555 4.623932 ACAGCCTACTCAAGTGAATTGA 57.376 40.909 0.00 0.00 45.79 2.57
2046 2556 5.220739 GCATACAGCCTACTCAAGTGAATTG 60.221 44.000 0.00 0.00 37.49 2.32
2047 2557 4.878397 GCATACAGCCTACTCAAGTGAATT 59.122 41.667 0.00 0.00 37.23 2.17
2048 2558 4.080919 TGCATACAGCCTACTCAAGTGAAT 60.081 41.667 0.00 0.00 44.83 2.57
2056 2566 5.012328 ACTTAAGTGCATACAGCCTACTC 57.988 43.478 7.48 0.00 44.83 2.59
2062 2572 4.394795 CGTGAAACTTAAGTGCATACAGC 58.605 43.478 9.34 0.00 38.30 4.40
2073 2583 1.810151 GCTCATGGCCGTGAAACTTAA 59.190 47.619 27.33 4.61 34.27 1.85
2089 2599 8.659527 TCATATATCTAAATTGTTGGGAGCTCA 58.340 33.333 17.19 0.00 0.00 4.26
2111 2621 9.555727 GCAGGACAGTTAAGGTTATTATTCATA 57.444 33.333 0.00 0.00 0.00 2.15
2129 2639 1.667724 GAACATCCGAATGCAGGACAG 59.332 52.381 0.00 0.00 41.10 3.51
2131 2641 1.017387 GGAACATCCGAATGCAGGAC 58.983 55.000 0.00 0.00 41.10 3.85
2140 2650 0.320683 CAGTGCACAGGAACATCCGA 60.321 55.000 21.04 0.00 42.75 4.55
2149 2659 2.281070 AACGGAGCAGTGCACAGG 60.281 61.111 21.04 11.97 0.00 4.00
2155 2665 1.003545 CACTGTTTCAACGGAGCAGTG 60.004 52.381 5.07 5.07 44.45 3.66
2160 2670 2.217847 CGTGTACACTGTTTCAACGGAG 59.782 50.000 23.01 0.12 38.65 4.63
2171 2681 2.157834 TAAACCCAGCGTGTACACTG 57.842 50.000 23.01 15.17 0.00 3.66
2179 2689 3.412237 TTAAGCTCTTAAACCCAGCGT 57.588 42.857 0.00 0.00 38.26 5.07
2180 2690 3.487544 GCATTAAGCTCTTAAACCCAGCG 60.488 47.826 6.22 0.00 38.38 5.18
2212 2724 0.819582 AGCGAAATCCAAATGCAGGG 59.180 50.000 0.00 0.00 0.00 4.45
2229 2741 2.276472 TCAACAAAACAGCACACAGC 57.724 45.000 0.00 0.00 46.19 4.40
2259 2771 8.871629 TTGTATGAAGCTCTTAAACCCAATAA 57.128 30.769 0.00 0.00 0.00 1.40
2283 2796 0.185901 TCTTTTCCAGGCCACAGCTT 59.814 50.000 5.01 0.00 39.73 3.74
2284 2797 0.185901 TTCTTTTCCAGGCCACAGCT 59.814 50.000 5.01 0.00 39.73 4.24
2313 2826 4.218200 TCATTGTTCTACAAATGGTGCTGG 59.782 41.667 0.00 0.00 41.96 4.85
2327 2840 8.850156 ACTGCTTAGTTACAAAATCATTGTTCT 58.150 29.630 0.00 2.52 34.11 3.01
2349 2862 6.758886 ACATCATTACTTAGTGAGCTTACTGC 59.241 38.462 20.67 0.00 43.29 4.40
2376 2889 5.752955 GTCCTAAGAGATTTGAGATCACAGC 59.247 44.000 0.00 0.00 0.00 4.40
2377 2890 6.098124 AGGTCCTAAGAGATTTGAGATCACAG 59.902 42.308 0.00 0.00 0.00 3.66
2396 2909 5.014123 TGTCTAACCAATCATCAAAGGTCCT 59.986 40.000 0.00 0.00 32.05 3.85
2400 2913 9.793252 CTTTATTGTCTAACCAATCATCAAAGG 57.207 33.333 0.00 0.00 36.48 3.11
2498 3012 4.620609 GCTCTGATGATAGCACGTAGATTG 59.379 45.833 0.00 0.00 38.63 2.67
2505 3221 1.339291 TGAGGCTCTGATGATAGCACG 59.661 52.381 16.72 0.00 40.61 5.34
2520 3236 6.651225 ACACTAAAGAGTAACAAATCTGAGGC 59.349 38.462 0.00 0.00 33.32 4.70
2530 3246 9.938280 ATAGCATGTAAACACTAAAGAGTAACA 57.062 29.630 0.00 0.00 33.32 2.41
2598 3320 1.532007 AGCGTAGATGAGTAGTAGCGC 59.468 52.381 0.00 0.00 43.29 5.92
2662 3411 2.353357 TCCCAATGCAGAGCCAATAG 57.647 50.000 0.00 0.00 0.00 1.73
2722 3471 6.353323 TCGCCTTCATAAAAGATAACATGGA 58.647 36.000 0.00 0.00 0.00 3.41
3038 3789 2.733945 GAGATCGCTCCAGCCTCC 59.266 66.667 0.00 0.00 37.91 4.30
3056 3807 2.037381 AGTGGTCTTCGAAGAAGAACCC 59.963 50.000 28.58 23.51 45.90 4.11
3077 3828 3.133691 CAAACAGAGCTAAGCAGTGACA 58.866 45.455 0.00 0.00 0.00 3.58
3166 3917 6.007076 TGAACTTGCCAAACATATCCAACTA 58.993 36.000 0.00 0.00 0.00 2.24
3175 3926 0.681175 GCCCTGAACTTGCCAAACAT 59.319 50.000 0.00 0.00 0.00 2.71
3217 3968 9.829507 TGATTTATTTCCAAACACAAAGACATT 57.170 25.926 0.00 0.00 0.00 2.71
3219 3970 9.658799 TTTGATTTATTTCCAAACACAAAGACA 57.341 25.926 0.00 0.00 30.68 3.41
3229 3980 9.092876 GCCGACATAATTTGATTTATTTCCAAA 57.907 29.630 0.00 0.00 34.76 3.28
3232 4001 7.136119 TCGCCGACATAATTTGATTTATTTCC 58.864 34.615 0.00 0.00 0.00 3.13
3241 4010 6.162777 TGATGATATCGCCGACATAATTTGA 58.837 36.000 0.00 0.00 0.00 2.69
3250 4019 1.798813 GGGTTTGATGATATCGCCGAC 59.201 52.381 0.00 0.00 0.00 4.79
3252 4021 1.156736 GGGGTTTGATGATATCGCCG 58.843 55.000 0.00 0.00 0.00 6.46
3255 4024 5.532406 AGTCATTTGGGGTTTGATGATATCG 59.468 40.000 0.00 0.00 31.85 2.92
3296 4065 9.219603 GAAGCAATAAAGAGTGGCATGTATATA 57.780 33.333 0.00 0.00 0.00 0.86
3297 4066 7.175641 GGAAGCAATAAAGAGTGGCATGTATAT 59.824 37.037 0.00 0.00 0.00 0.86
3306 4075 3.019564 CAGGGGAAGCAATAAAGAGTGG 58.980 50.000 0.00 0.00 0.00 4.00
3325 4094 3.674682 CGTCTAAGGTTCTCTTCCAGCAG 60.675 52.174 0.00 0.00 36.93 4.24
3341 4110 5.655532 ACTGAATCCTACCTTAAGCGTCTAA 59.344 40.000 0.00 0.00 0.00 2.10
3355 4124 6.433404 ACGACTTAGACTGAAACTGAATCCTA 59.567 38.462 0.00 0.00 0.00 2.94
3358 4127 5.164041 GCACGACTTAGACTGAAACTGAATC 60.164 44.000 0.00 0.00 0.00 2.52
3407 4176 2.222027 AGAAAACGCTTCCTTCACCAG 58.778 47.619 0.00 0.00 0.00 4.00
3410 4179 2.157085 CGGTAGAAAACGCTTCCTTCAC 59.843 50.000 0.00 0.00 0.00 3.18
3422 4191 1.004679 GGTCACCGGCGGTAGAAAA 60.005 57.895 33.65 12.11 32.11 2.29
3423 4192 1.756408 TTGGTCACCGGCGGTAGAAA 61.756 55.000 33.65 20.03 32.11 2.52
3534 4303 0.406750 TGGAGGAGTACGGGTTCAGA 59.593 55.000 0.00 0.00 0.00 3.27
3536 4305 1.481871 GATGGAGGAGTACGGGTTCA 58.518 55.000 0.00 0.00 0.00 3.18
3602 4371 2.304401 CGCCGCGTGTTCTTGTACA 61.304 57.895 4.92 0.00 0.00 2.90
3989 4758 1.905894 TGGTGGTCTGCAAGCTATACA 59.094 47.619 0.00 0.00 0.00 2.29
3993 4762 0.692476 ACATGGTGGTCTGCAAGCTA 59.308 50.000 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.