AutoCloner

Multiple sequence alignment - TraesCS2B01G381300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2B01G381300	chr2B	100.000	3182	0	0	1	3182	545232416	545229235	0.000000e+00	5877
1	TraesCS2B01G381300	chr2B	91.202	932	40	13	5	912	666079385	666078472	0.000000e+00	1229
2	TraesCS2B01G381300	chr2D	94.644	1363	56	11	996	2350	462790584	462789231	0.000000e+00	2097
3	TraesCS2B01G381300	chr2D	90.634	1057	66	18	2134	3182	462787852	462786821	0.000000e+00	1373
4	TraesCS2B01G381300	chr2D	86.598	97	11	2	1421	1516	19556095	19556190	4.340000e-19	106
5	TraesCS2B01G381300	chr2A	94.039	1275	54	7	941	2198	607602513	607601244	0.000000e+00	1914
6	TraesCS2B01G381300	chr2A	88.141	936	63	28	2244	3162	607601248	607600344	0.000000e+00	1070
7	TraesCS2B01G381300	chr1A	91.711	941	51	13	4	920	21482271	21481334	0.000000e+00	1280
8	TraesCS2B01G381300	chr1A	89.466	731	50	14	205	911	575504132	575504859	0.000000e+00	898
9	TraesCS2B01G381300	chr5A	91.267	939	51	14	1	911	33001328	33002263	0.000000e+00	1251
10	TraesCS2B01G381300	chr5A	87.189	523	44	11	146	649	575595286	575594768	9.900000e-160	573
11	TraesCS2B01G381300	chr1B	91.812	916	40	13	1	892	494065911	494066815	0.000000e+00	1243
12	TraesCS2B01G381300	chr1B	91.841	478	39	0	1183	1660	630578372	630577895	0.000000e+00	667
13	TraesCS2B01G381300	chrUn	95.992	499	17	2	1	496	213609710	213610208	0.000000e+00	808
14	TraesCS2B01G381300	chrUn	92.388	381	23	3	537	911	35200956	35201336	3.610000e-149	538
15	TraesCS2B01G381300	chrUn	92.388	381	23	3	537	911	236916366	236915986	3.610000e-149	538
16	TraesCS2B01G381300	chr5D	88.145	523	39	11	146	649	457664713	457664195	4.540000e-168	601
17	TraesCS2B01G381300	chr5D	76.700	691	124	34	1325	1995	356189271	356189944	1.820000e-92	350
18	TraesCS2B01G381300	chr5B	87.072	526	45	11	146	652	559764401	559763880	9.900000e-160	573
19	TraesCS2B01G381300	chr4B	84.631	501	53	19	421	912	639238731	639239216	7.990000e-131	477
20	TraesCS2B01G381300	chr4A	90.775	271	19	3	656	921	670535593	670535324	1.090000e-94	357
21	TraesCS2B01G381300	chr3D	86.598	97	11	2	1421	1516	589672847	589672752	4.340000e-19	106

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2B01G381300	chr2B	545229235	545232416	3181	True	5877	5877	100.000	1	3182	1	chr2B.!!$R1	3181
1	TraesCS2B01G381300	chr2B	666078472	666079385	913	True	1229	1229	91.202	5	912	1	chr2B.!!$R2	907
2	TraesCS2B01G381300	chr2D	462786821	462790584	3763	True	1735	2097	92.639	996	3182	2	chr2D.!!$R1	2186
3	TraesCS2B01G381300	chr2A	607600344	607602513	2169	True	1492	1914	91.090	941	3162	2	chr2A.!!$R1	2221
4	TraesCS2B01G381300	chr1A	21481334	21482271	937	True	1280	1280	91.711	4	920	1	chr1A.!!$R1	916
5	TraesCS2B01G381300	chr1A	575504132	575504859	727	False	898	898	89.466	205	911	1	chr1A.!!$F1	706
6	TraesCS2B01G381300	chr5A	33001328	33002263	935	False	1251	1251	91.267	1	911	1	chr5A.!!$F1	910
7	TraesCS2B01G381300	chr5A	575594768	575595286	518	True	573	573	87.189	146	649	1	chr5A.!!$R1	503
8	TraesCS2B01G381300	chr1B	494065911	494066815	904	False	1243	1243	91.812	1	892	1	chr1B.!!$F1	891
9	TraesCS2B01G381300	chr5D	457664195	457664713	518	True	601	601	88.145	146	649	1	chr5D.!!$R1	503
10	TraesCS2B01G381300	chr5D	356189271	356189944	673	False	350	350	76.700	1325	1995	1	chr5D.!!$F1	670
11	TraesCS2B01G381300	chr5B	559763880	559764401	521	True	573	573	87.072	146	652	1	chr5B.!!$R1	506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
917	947	0.103208	AGTGATTTCGGCCTCTAGCG	59.897	55.0	0.0	0.0	45.17	4.26	F
961	991	0.249238	GCTCGCTCGATCATCTTGGT	60.249	55.0	0.0	0.0	0.00	3.67	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2118	2174	0.174617	CTTCTGCGAGAGAGGTTCCC	59.825	60.0	0.0	0.0	30.18	3.97	R
2752	4392	0.179197	CAGCGCTTCAAGCAGTGATG	60.179	55.0	7.5	0.0	42.58	3.07	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
102	103	7.013655	ACTCAACCATGCCTAATATGAATTGAC	59.986	37.037	0.00	0.00	32.26	3.18
126	127	7.851228	ACTGATACAGATTTGAACTGGATACA	58.149	34.615	5.76	0.00	38.81	2.29
166	167	3.408501	CTGCGAGTCGAGGCTGAGG	62.409	68.421	18.61	0.00	0.00	3.86
317	319	2.758089	GCGCCTTCCTGCACATCTG	61.758	63.158	0.00	0.00	0.00	2.90
496	505	4.742201	CGCGGTGGGACTCAGGTG	62.742	72.222	0.00	0.00	0.00	4.00
500	509	2.147387	GGTGGGACTCAGGTGGTGT	61.147	63.158	0.00	0.00	0.00	4.16
525	549	0.392998	CCTTGAGGTTGCCGTATGCT	60.393	55.000	0.00	0.00	42.00	3.79
526	550	1.009829	CTTGAGGTTGCCGTATGCTC	58.990	55.000	0.00	0.00	42.00	4.26
527	551	0.739462	TTGAGGTTGCCGTATGCTCG	60.739	55.000	0.00	0.00	42.00	5.03
528	552	1.153628	GAGGTTGCCGTATGCTCGT	60.154	57.895	0.00	0.00	42.00	4.18
529	553	1.146358	GAGGTTGCCGTATGCTCGTC	61.146	60.000	0.00	0.00	42.00	4.20
531	555	2.883730	TTGCCGTATGCTCGTCGC	60.884	61.111	0.00	0.00	42.00	5.19
534	558	4.547905	CCGTATGCTCGTCGCGGT	62.548	66.667	6.13	0.00	43.27	5.68
535	559	3.312504	CGTATGCTCGTCGCGGTG	61.313	66.667	6.13	0.00	43.27	4.94
731	756	2.917933	CTTGGCGTTTCCATATGGAGA	58.082	47.619	23.35	17.34	46.04	3.71
743	768	6.037786	TCCATATGGAGATAAAACGCTAGG	57.962	41.667	20.98	0.00	39.78	3.02
784	810	0.311165	GCTGAAGCGCGAGATACCTA	59.689	55.000	12.10	0.00	0.00	3.08
811	837	6.772078	CGTTTTTATATGGAGAAGAAACGCT	58.228	36.000	5.68	0.00	40.51	5.07
870	900	5.215160	ACTTTCATGTCGAGTTCATTTTGC	58.785	37.500	0.00	0.00	0.00	3.68
917	947	0.103208	AGTGATTTCGGCCTCTAGCG	59.897	55.000	0.00	0.00	45.17	4.26
920	950	0.669077	GATTTCGGCCTCTAGCGAGA	59.331	55.000	0.00	0.00	45.17	4.04
934	964	3.329114	CGAGAGCAGTGTCGCATAA	57.671	52.632	0.00	0.00	32.03	1.90
935	965	1.629013	CGAGAGCAGTGTCGCATAAA	58.371	50.000	0.00	0.00	32.03	1.40
936	966	1.992667	CGAGAGCAGTGTCGCATAAAA	59.007	47.619	0.00	0.00	32.03	1.52
937	967	2.028523	CGAGAGCAGTGTCGCATAAAAG	59.971	50.000	0.00	0.00	32.03	2.27
938	968	2.349886	GAGAGCAGTGTCGCATAAAAGG	59.650	50.000	0.00	0.00	0.00	3.11
939	969	2.076863	GAGCAGTGTCGCATAAAAGGT	58.923	47.619	0.00	0.00	0.00	3.50
949	979	2.033662	CGCATAAAAGGTTAGCTCGCTC	60.034	50.000	0.00	0.00	0.00	5.03
952	982	2.674796	AAAAGGTTAGCTCGCTCGAT	57.325	45.000	0.00	0.00	0.00	3.59
961	991	0.249238	GCTCGCTCGATCATCTTGGT	60.249	55.000	0.00	0.00	0.00	3.67
970	1000	1.490490	GATCATCTTGGTACCCCTGCA	59.510	52.381	10.07	0.00	0.00	4.41
979	1013	2.072487	TACCCCTGCATCTGCCTCC	61.072	63.158	0.00	0.00	41.18	4.30
994	1028	1.144057	CTCCGCCGCTGAGGTAATT	59.856	57.895	3.97	0.00	43.70	1.40
1288	1328	4.577246	GCCTCTACCTGCCGAGCG	62.577	72.222	0.00	0.00	0.00	5.03
1692	1747	3.083349	ATAGCGCTGCTGGACCCA	61.083	61.111	22.90	0.00	40.10	4.51
1844	1900	3.749064	GGCGAGAGACGAGTGGCA	61.749	66.667	0.00	0.00	45.77	4.92
2118	2174	5.226396	TCGGCCAAATACACAAATTTCTTG	58.774	37.500	2.24	0.00	0.00	3.02
2123	2179	6.073276	GCCAAATACACAAATTTCTTGGGAAC	60.073	38.462	0.00	0.00	0.00	3.62
2141	2197	0.968393	ACCTCTCTCGCAGAAGGACC	60.968	60.000	14.79	0.00	34.09	4.46
2155	2211	1.420430	AGGACCGGAGAAGAACAACA	58.580	50.000	9.46	0.00	0.00	3.33
2156	2212	1.978580	AGGACCGGAGAAGAACAACAT	59.021	47.619	9.46	0.00	0.00	2.71
2161	2217	5.239963	GGACCGGAGAAGAACAACATAAAAA	59.760	40.000	9.46	0.00	0.00	1.94
2186	2242	6.930722	AGGAAATCCAGTTGCAAGTAAAAATG	59.069	34.615	6.43	0.00	38.89	2.32
2187	2243	6.705825	GGAAATCCAGTTGCAAGTAAAAATGT	59.294	34.615	6.43	0.00	35.64	2.71
2209	2265	7.716799	TGTAACAAATTTAGGGAGCATTCAT	57.283	32.000	0.00	0.00	0.00	2.57
2255	2311	4.421058	TCACGTTTGGATCTATCGTTCTG	58.579	43.478	6.99	0.00	32.47	3.02
2257	2313	2.540101	CGTTTGGATCTATCGTTCTGGC	59.460	50.000	0.00	0.00	0.00	4.85
2258	2314	3.531538	GTTTGGATCTATCGTTCTGGCA	58.468	45.455	0.00	0.00	0.00	4.92
2260	2316	4.422073	TTGGATCTATCGTTCTGGCATT	57.578	40.909	0.00	0.00	0.00	3.56
2262	2318	3.244215	TGGATCTATCGTTCTGGCATTCC	60.244	47.826	0.00	0.00	0.00	3.01
2274	3871	5.581126	TCTGGCATTCCATTGTGTTAATC	57.419	39.130	0.00	0.00	42.51	1.75
2277	3874	4.160065	TGGCATTCCATTGTGTTAATCCAG	59.840	41.667	0.00	0.00	37.47	3.86
2278	3875	4.160252	GGCATTCCATTGTGTTAATCCAGT	59.840	41.667	0.00	0.00	0.00	4.00
2306	3941	2.772077	TTTATGTAAGGCACTCCGCA	57.228	45.000	0.00	0.00	45.17	5.69
2443	4081	4.672409	GGCAAAATCTTTCCAGGTTATCG	58.328	43.478	0.00	0.00	0.00	2.92
2474	4112	6.233434	CCAGAGTTATATAGATTTGCCAGCA	58.767	40.000	0.00	0.00	0.00	4.41
2493	4131	3.774066	GCAAAGGGCATAACAACAGATC	58.226	45.455	0.00	0.00	43.97	2.75
2518	4156	9.165287	TCGACTGCGATGGTACATATTACTACC	62.165	44.444	0.00	0.00	42.51	3.18
2752	4392	4.029287	GGAACGCGGATAGAAGGC	57.971	61.111	12.47	0.00	0.00	4.35
2795	4435	5.513141	GCAGCGAAAAAGATTTATTCAGTCC	59.487	40.000	0.00	0.00	0.00	3.85
2815	4457	3.703556	TCCACTGGCATTTCAAACAAGAA	59.296	39.130	0.00	0.00	0.00	2.52
2825	4467	7.391016	GCATTTCAAACAAGAACTACAACAAC	58.609	34.615	0.00	0.00	0.00	3.32
2861	4504	6.575162	AGGTTTGGTTTAACTCACATCATC	57.425	37.500	0.00	0.00	0.00	2.92
2910	4553	0.972883	ATATCTCCTCCCTCGCTTGC	59.027	55.000	0.00	0.00	0.00	4.01
2964	4607	5.695816	CAGCTTTTTAGCACAAATAAGGCAA	59.304	36.000	0.00	0.00	37.25	4.52
3027	4670	5.573296	TGAAACACAAATGCGCATAAAAG	57.427	34.783	25.61	16.37	0.00	2.27
3028	4671	5.046529	TGAAACACAAATGCGCATAAAAGT	58.953	33.333	25.61	17.03	0.00	2.66
3071	4718	8.680903	AGCATCTTCATAACAGGAAATAAACTG	58.319	33.333	0.00	0.00	40.48	3.16
3072	4719	7.917505	GCATCTTCATAACAGGAAATAAACTGG	59.082	37.037	0.00	0.00	39.00	4.00
3074	4721	8.561738	TCTTCATAACAGGAAATAAACTGGAC	57.438	34.615	0.00	0.00	39.00	4.02
3094	4746	5.123820	TGGACTCAATACATAAACTGCAAGC	59.876	40.000	0.00	0.00	37.60	4.01
3096	4748	4.695455	ACTCAATACATAAACTGCAAGCGT	59.305	37.500	0.00	0.00	37.60	5.07
3097	4749	5.163854	ACTCAATACATAAACTGCAAGCGTC	60.164	40.000	0.00	0.00	37.60	5.19
3101	4753	2.666508	ACATAAACTGCAAGCGTCGTAG	59.333	45.455	0.00	0.00	37.60	3.51
3102	4754	1.705256	TAAACTGCAAGCGTCGTAGG	58.295	50.000	0.00	0.00	37.60	3.18
3130	4782	8.088365	TGAAGATATATGACACATTTCCTACCG	58.912	37.037	0.00	0.00	0.00	4.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
2	3	1.470285	GGCCGCAAGTACTCGAATACA	60.470	52.381	6.82	0.00	0.00	2.29
102	103	7.765819	TGTGTATCCAGTTCAAATCTGTATCAG	59.234	37.037	0.00	0.00	0.00	2.90
126	127	0.248907	CTGGACGTGTTCTCGTGTGT	60.249	55.000	0.00	0.00	44.21	3.72
317	319	1.347320	GTTCGACGACTCCAACATCC	58.653	55.000	0.00	0.00	0.00	3.51
492	501	0.033601	TCAAGGTTTGCACACCACCT	60.034	50.000	23.55	11.95	43.17	4.00
525	549	3.636313	GAATGTCCCACCGCGACGA	62.636	63.158	8.23	0.00	32.68	4.20
526	550	3.186047	GAATGTCCCACCGCGACG	61.186	66.667	8.23	0.00	32.68	5.12
527	551	2.818274	GGAATGTCCCACCGCGAC	60.818	66.667	8.23	0.00	0.00	5.19
528	552	4.444838	CGGAATGTCCCACCGCGA	62.445	66.667	8.23	0.00	40.19	5.87
532	556	3.134127	GCAGCGGAATGTCCCACC	61.134	66.667	0.00	0.00	31.13	4.61
533	557	1.675641	AAGCAGCGGAATGTCCCAC	60.676	57.895	0.00	0.00	31.13	4.61
534	558	1.675310	CAAGCAGCGGAATGTCCCA	60.675	57.895	0.00	0.00	31.13	4.37
535	559	1.377202	TCAAGCAGCGGAATGTCCC	60.377	57.895	0.00	0.00	31.13	4.46
540	564	2.094659	CGACGTCAAGCAGCGGAAT	61.095	57.895	17.16	0.00	0.00	3.01
743	768	2.225491	TCCACATTCAAACGCAAGCTAC	59.775	45.455	0.00	0.00	45.62	3.58
784	810	6.183360	CGTTTCTTCTCCATATAAAAACGCCT	60.183	38.462	4.80	0.00	40.33	5.52
870	900	4.222114	GACCTTTTCAGCAATCTTTGTCG	58.778	43.478	0.00	0.00	0.00	4.35
917	947	2.349886	CCTTTTATGCGACACTGCTCTC	59.650	50.000	0.00	0.00	35.36	3.20
920	950	2.185004	ACCTTTTATGCGACACTGCT	57.815	45.000	0.00	0.00	35.36	4.24
921	951	2.989422	AACCTTTTATGCGACACTGC	57.011	45.000	0.00	0.00	0.00	4.40
922	952	3.684788	AGCTAACCTTTTATGCGACACTG	59.315	43.478	0.00	0.00	0.00	3.66
923	953	3.933332	GAGCTAACCTTTTATGCGACACT	59.067	43.478	0.00	0.00	0.00	3.55
924	954	3.241995	CGAGCTAACCTTTTATGCGACAC	60.242	47.826	0.00	0.00	0.00	3.67
925	955	2.927477	CGAGCTAACCTTTTATGCGACA	59.073	45.455	0.00	0.00	0.00	4.35
926	956	2.285660	GCGAGCTAACCTTTTATGCGAC	60.286	50.000	0.00	0.00	0.00	5.19
927	957	1.931172	GCGAGCTAACCTTTTATGCGA	59.069	47.619	0.00	0.00	0.00	5.10
928	958	1.933853	AGCGAGCTAACCTTTTATGCG	59.066	47.619	0.00	0.00	0.00	4.73
929	959	2.033662	CGAGCGAGCTAACCTTTTATGC	60.034	50.000	0.00	0.00	0.00	3.14
930	960	3.444916	TCGAGCGAGCTAACCTTTTATG	58.555	45.455	0.00	0.00	0.00	1.90
931	961	3.795623	TCGAGCGAGCTAACCTTTTAT	57.204	42.857	0.00	0.00	0.00	1.40
932	962	3.129813	TGATCGAGCGAGCTAACCTTTTA	59.870	43.478	9.60	0.00	0.00	1.52
933	963	2.094182	TGATCGAGCGAGCTAACCTTTT	60.094	45.455	9.60	0.00	0.00	2.27
934	964	1.476891	TGATCGAGCGAGCTAACCTTT	59.523	47.619	9.60	0.00	0.00	3.11
935	965	1.103803	TGATCGAGCGAGCTAACCTT	58.896	50.000	9.60	0.00	0.00	3.50
936	966	1.268352	GATGATCGAGCGAGCTAACCT	59.732	52.381	9.60	0.00	0.00	3.50
937	967	1.268352	AGATGATCGAGCGAGCTAACC	59.732	52.381	9.60	0.00	0.00	2.85
938	968	2.697431	AGATGATCGAGCGAGCTAAC	57.303	50.000	9.60	1.59	0.00	2.34
939	969	2.287849	CCAAGATGATCGAGCGAGCTAA	60.288	50.000	9.60	0.00	0.00	3.09
961	991	2.072487	GGAGGCAGATGCAGGGGTA	61.072	63.158	7.19	0.00	44.36	3.69
979	1013	1.062525	GCAAATTACCTCAGCGGCG	59.937	57.895	0.51	0.51	35.61	6.46
991	1025	1.000233	TCCCCGCCATGAGCAAATT	60.000	52.632	0.00	0.00	44.04	1.82
1502	1548	3.810255	TGAGCACCCATCTCAGCA	58.190	55.556	0.00	0.00	35.81	4.41
2093	2149	6.036577	AGAAATTTGTGTATTTGGCCGAAT	57.963	33.333	22.05	22.05	0.00	3.34
2118	2174	0.174617	CTTCTGCGAGAGAGGTTCCC	59.825	60.000	0.00	0.00	30.18	3.97
2123	2179	1.813192	GGTCCTTCTGCGAGAGAGG	59.187	63.158	0.00	0.00	30.18	3.69
2124	2180	1.431440	CGGTCCTTCTGCGAGAGAG	59.569	63.158	0.00	0.00	30.18	3.20
2125	2181	2.046864	CCGGTCCTTCTGCGAGAGA	61.047	63.158	0.00	0.00	0.00	3.10
2141	2197	6.554334	TCCTTTTTATGTTGTTCTTCTCCG	57.446	37.500	0.00	0.00	0.00	4.63
2155	2211	7.066307	ACTTGCAACTGGATTTCCTTTTTAT	57.934	32.000	0.00	0.00	36.82	1.40
2156	2212	6.478512	ACTTGCAACTGGATTTCCTTTTTA	57.521	33.333	0.00	0.00	36.82	1.52
2161	2217	6.478512	TTTTTACTTGCAACTGGATTTCCT	57.521	33.333	0.00	0.00	36.82	3.36
2186	2242	6.980397	CCATGAATGCTCCCTAAATTTGTTAC	59.020	38.462	0.00	0.00	0.00	2.50
2187	2243	6.667414	ACCATGAATGCTCCCTAAATTTGTTA	59.333	34.615	0.00	0.00	0.00	2.41
2199	2255	6.455360	TGAGAATTTAACCATGAATGCTCC	57.545	37.500	9.35	0.00	36.71	4.70
2200	2256	7.977853	ACAATGAGAATTTAACCATGAATGCTC	59.022	33.333	6.07	6.07	37.60	4.26
2255	2311	4.160252	ACTGGATTAACACAATGGAATGCC	59.840	41.667	0.00	0.00	0.00	4.40
2257	2313	8.606040	AAAAACTGGATTAACACAATGGAATG	57.394	30.769	0.00	0.00	0.00	2.67
2293	3928	0.322456	AAGCAATGCGGAGTGCCTTA	60.322	50.000	25.60	0.00	44.45	2.69
2306	3941	3.554934	TCCAGTGTTCAGTGAAAGCAAT	58.445	40.909	7.25	0.00	0.00	3.56
2443	4081	4.768130	TCTATATAACTCTGGCTGCGTC	57.232	45.455	0.00	0.00	0.00	5.19
2474	4112	3.689649	GTCGATCTGTTGTTATGCCCTTT	59.310	43.478	0.00	0.00	0.00	3.11
2493	4131	4.795268	AGTAATATGTACCATCGCAGTCG	58.205	43.478	0.00	0.00	0.00	4.18
2711	4349	1.140312	TCTGTTCTTGCCCTGGTTCT	58.860	50.000	0.00	0.00	0.00	3.01
2746	4386	2.434428	CTTCAAGCAGTGATGCCTTCT	58.566	47.619	0.00	0.00	35.70	2.85
2748	4388	0.886563	GCTTCAAGCAGTGATGCCTT	59.113	50.000	3.89	0.00	46.68	4.35
2752	4392	0.179197	CAGCGCTTCAAGCAGTGATG	60.179	55.000	7.50	0.00	42.58	3.07
2778	4418	5.774690	TGCCAGTGGACTGAATAAATCTTTT	59.225	36.000	15.20	0.00	46.59	2.27
2795	4435	4.685924	AGTTCTTGTTTGAAATGCCAGTG	58.314	39.130	0.00	0.00	0.00	3.66
2815	4457	3.277652	CGTGGTCCGTTGTTGTAGT	57.722	52.632	0.00	0.00	0.00	2.73
2825	4467	1.264826	CCAAACCTTTTACGTGGTCCG	59.735	52.381	0.00	0.00	44.03	4.79
2838	4481	5.181245	CGATGATGTGAGTTAAACCAAACCT	59.819	40.000	0.00	0.00	0.00	3.50
2861	4504	1.672854	TAAGGATGCTCGTGGACCCG	61.673	60.000	0.00	0.00	0.00	5.28
2910	4553	9.323985	ACTTTTGCTTCTATATCTTCAGCTAAG	57.676	33.333	0.00	0.00	36.45	2.18
2924	4567	5.835113	AAAGCTGACAACTTTTGCTTCTA	57.165	34.783	0.00	0.00	42.23	2.10
3071	4718	5.573146	GCTTGCAGTTTATGTATTGAGTCC	58.427	41.667	0.00	0.00	0.00	3.85
3072	4719	5.163854	ACGCTTGCAGTTTATGTATTGAGTC	60.164	40.000	0.00	0.00	0.00	3.36
3074	4721	5.221891	ACGCTTGCAGTTTATGTATTGAG	57.778	39.130	0.00	0.00	0.00	3.02
3094	4746	6.962116	GTGTCATATATCTTCATCCTACGACG	59.038	42.308	0.00	0.00	0.00	5.12
3096	4748	7.996098	TGTGTCATATATCTTCATCCTACGA	57.004	36.000	0.00	0.00	0.00	3.43
3097	4749	9.645059	AAATGTGTCATATATCTTCATCCTACG	57.355	33.333	0.00	0.00	0.00	3.51

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.