Multiple sequence alignment - TraesCS2B01G381100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G381100 chr2B 100.000 4454 0 0 1 4454 545157087 545161540 0.000000e+00 8226.0
1 TraesCS2B01G381100 chr2B 85.851 417 43 7 1957 2364 545227608 545228017 3.180000e-116 429.0
2 TraesCS2B01G381100 chr2B 82.530 332 37 10 1491 1810 545227027 545227349 5.680000e-69 272.0
3 TraesCS2B01G381100 chr2B 82.955 264 39 6 2807 3068 545229045 545229304 2.680000e-57 233.0
4 TraesCS2B01G381100 chr2B 86.256 211 28 1 2477 2686 545228610 545228820 1.250000e-55 228.0
5 TraesCS2B01G381100 chr2B 94.186 86 5 0 1401 1486 545226787 545226872 1.010000e-26 132.0
6 TraesCS2B01G381100 chr2B 87.952 83 10 0 2228 2310 175900006 175900088 1.020000e-16 99.0
7 TraesCS2B01G381100 chr2B 98.148 54 1 0 4399 4452 785884562 785884509 1.320000e-15 95.3
8 TraesCS2B01G381100 chr2D 91.541 1927 123 26 1 1906 462244283 462246190 0.000000e+00 2619.0
9 TraesCS2B01G381100 chr2D 91.569 510 20 7 3187 3673 462248019 462248528 0.000000e+00 682.0
10 TraesCS2B01G381100 chr2D 87.734 481 34 4 1908 2364 462246293 462246772 5.070000e-149 538.0
11 TraesCS2B01G381100 chr2D 86.811 417 44 3 1957 2364 462785193 462785607 5.250000e-124 455.0
12 TraesCS2B01G381100 chr2D 87.324 355 19 3 2473 2802 462247373 462247726 2.510000e-102 383.0
13 TraesCS2B01G381100 chr2D 85.484 372 33 11 3869 4236 462248769 462249123 7.040000e-98 368.0
14 TraesCS2B01G381100 chr2D 83.010 412 49 11 1491 1892 462784608 462785008 1.970000e-93 353.0
15 TraesCS2B01G381100 chr2D 82.890 263 39 6 2807 3068 462786632 462786889 9.630000e-57 231.0
16 TraesCS2B01G381100 chr2D 91.358 162 11 2 3670 3829 462248608 462248768 7.500000e-53 219.0
17 TraesCS2B01G381100 chr2D 84.018 219 29 5 2477 2690 462786195 462786412 5.840000e-49 206.0
18 TraesCS2B01G381100 chr2D 92.857 126 6 2 2934 3058 462247890 462248013 3.540000e-41 180.0
19 TraesCS2B01G381100 chr2D 93.396 106 7 0 2361 2466 462247067 462247172 1.660000e-34 158.0
20 TraesCS2B01G381100 chr2D 93.878 98 4 2 2807 2904 462247795 462247890 3.590000e-31 147.0
21 TraesCS2B01G381100 chr2D 94.186 86 5 0 1401 1486 462784370 462784455 1.010000e-26 132.0
22 TraesCS2B01G381100 chr2D 92.771 83 4 1 3095 3175 13478721 13478803 7.830000e-23 119.0
23 TraesCS2B01G381100 chr2D 96.610 59 1 1 4394 4452 261732542 261732485 3.670000e-16 97.1
24 TraesCS2B01G381100 chr2D 86.842 76 8 2 1410 1484 462784934 462785008 2.850000e-12 84.2
25 TraesCS2B01G381100 chr2A 90.113 1234 62 23 1 1222 607516855 607518040 0.000000e+00 1548.0
26 TraesCS2B01G381100 chr2A 87.030 1411 85 35 2934 4305 607520690 607522041 0.000000e+00 1502.0
27 TraesCS2B01G381100 chr2A 91.989 699 42 6 1219 1906 607518085 607518780 0.000000e+00 968.0
28 TraesCS2B01G381100 chr2A 94.480 471 14 4 507 977 610209547 610210005 0.000000e+00 715.0
29 TraesCS2B01G381100 chr2A 91.412 524 36 4 1392 1906 610210480 610211003 0.000000e+00 710.0
30 TraesCS2B01G381100 chr2A 84.892 556 26 20 3187 3739 610234031 610234531 3.970000e-140 508.0
31 TraesCS2B01G381100 chr2A 93.443 305 11 1 2069 2364 607519138 607519442 1.140000e-120 444.0
32 TraesCS2B01G381100 chr2A 86.750 400 42 3 1974 2364 607598651 607599048 6.840000e-118 435.0
33 TraesCS2B01G381100 chr2A 84.573 363 39 7 1508 1860 607598069 607598424 1.190000e-90 344.0
34 TraesCS2B01G381100 chr2A 93.427 213 13 1 1957 2169 610211171 610211382 9.300000e-82 315.0
35 TraesCS2B01G381100 chr2A 92.694 219 14 1 2473 2689 610226734 610226952 9.300000e-82 315.0
36 TraesCS2B01G381100 chr2A 92.899 169 11 1 2934 3101 610227414 610227582 1.240000e-60 244.0
37 TraesCS2B01G381100 chr2A 83.333 270 20 2 2560 2804 607520258 607520527 4.480000e-55 226.0
38 TraesCS2B01G381100 chr2A 86.111 180 22 3 2807 2986 607600147 607600323 1.640000e-44 191.0
39 TraesCS2B01G381100 chr2A 94.340 106 6 0 2361 2466 607519735 607519840 3.560000e-36 163.0
40 TraesCS2B01G381100 chr2A 98.901 91 1 0 2473 2563 607520039 607520129 3.560000e-36 163.0
41 TraesCS2B01G381100 chr2A 96.939 98 1 2 2807 2904 607520595 607520690 3.560000e-36 163.0
42 TraesCS2B01G381100 chr2A 94.898 98 2 3 2807 2904 610227320 610227414 2.780000e-32 150.0
43 TraesCS2B01G381100 chr2A 93.976 83 5 0 1397 1479 607597822 607597904 4.680000e-25 126.0
44 TraesCS2B01G381100 chr2A 98.305 59 0 1 4394 4452 244316836 244316893 7.880000e-18 102.0
45 TraesCS2B01G381100 chr2A 95.161 62 3 0 1305 1366 610210418 610210479 1.020000e-16 99.0
46 TraesCS2B01G381100 chr2A 96.296 54 2 0 4399 4452 706266718 706266665 6.140000e-14 89.8
47 TraesCS2B01G381100 chr2A 100.000 28 0 0 2689 2716 610226975 610227002 8.000000e-03 52.8
48 TraesCS2B01G381100 chr1B 76.776 366 45 25 1957 2293 656674604 656674958 7.660000e-38 169.0
49 TraesCS2B01G381100 chr1B 91.111 90 5 2 3083 3170 467547255 467547167 7.830000e-23 119.0
50 TraesCS2B01G381100 chr7D 92.771 83 4 2 3090 3171 611742532 611742613 7.830000e-23 119.0
51 TraesCS2B01G381100 chr7D 89.362 94 6 3 3093 3183 218418313 218418405 1.010000e-21 115.0
52 TraesCS2B01G381100 chr6D 92.771 83 4 1 3096 3176 401752496 401752414 7.830000e-23 119.0
53 TraesCS2B01G381100 chr6D 93.220 59 3 1 4394 4452 458532896 458532953 7.940000e-13 86.1
54 TraesCS2B01G381100 chr5D 92.771 83 4 1 3096 3176 310705339 310705257 7.830000e-23 119.0
55 TraesCS2B01G381100 chr5D 96.552 58 1 1 4395 4452 9392044 9392100 1.320000e-15 95.3
56 TraesCS2B01G381100 chr3B 94.805 77 2 2 3096 3171 256200730 256200655 7.830000e-23 119.0
57 TraesCS2B01G381100 chr3B 95.238 42 2 0 4321 4362 649657730 649657771 2.880000e-07 67.6
58 TraesCS2B01G381100 chr3B 90.909 44 4 0 4319 4362 121637094 121637051 4.810000e-05 60.2
59 TraesCS2B01G381100 chr3B 100.000 30 0 0 4332 4361 71118160 71118189 6.220000e-04 56.5
60 TraesCS2B01G381100 chr3A 94.805 77 2 2 3096 3171 217822251 217822176 7.830000e-23 119.0
61 TraesCS2B01G381100 chr3A 90.909 44 4 0 4319 4362 90078136 90078093 4.810000e-05 60.2
62 TraesCS2B01G381100 chr3A 90.909 44 4 0 4319 4362 90115773 90115730 4.810000e-05 60.2
63 TraesCS2B01G381100 chr3A 90.909 44 4 0 4319 4362 90125172 90125129 4.810000e-05 60.2
64 TraesCS2B01G381100 chr3A 100.000 29 0 0 4334 4362 89970333 89970305 2.000000e-03 54.7
65 TraesCS2B01G381100 chrUn 85.567 97 13 1 2108 2203 7643080 7643176 2.830000e-17 100.0
66 TraesCS2B01G381100 chrUn 85.567 97 13 1 2108 2203 290836695 290836599 2.830000e-17 100.0
67 TraesCS2B01G381100 chr4D 92.647 68 4 1 1617 1684 432939932 432939998 3.670000e-16 97.1
68 TraesCS2B01G381100 chr4D 92.647 68 4 1 1617 1684 432943009 432943075 3.670000e-16 97.1
69 TraesCS2B01G381100 chr6B 90.411 73 5 2 1617 1689 121782595 121782525 1.320000e-15 95.3
70 TraesCS2B01G381100 chr5B 98.077 52 1 0 4401 4452 594753692 594753641 1.710000e-14 91.6
71 TraesCS2B01G381100 chr3D 93.443 61 2 2 4395 4454 4927437 4927378 6.140000e-14 89.8
72 TraesCS2B01G381100 chr3D 93.333 45 1 2 4319 4362 75637708 75637665 1.030000e-06 65.8
73 TraesCS2B01G381100 chr1A 96.296 54 2 0 4399 4452 496077504 496077557 6.140000e-14 89.8
74 TraesCS2B01G381100 chr7A 91.489 47 4 0 4316 4362 457794612 457794658 1.030000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G381100 chr2B 545157087 545161540 4453 False 8226.000000 8226 100.000000 1 4454 1 chr2B.!!$F2 4453
1 TraesCS2B01G381100 chr2B 545226787 545229304 2517 False 258.800000 429 86.355600 1401 3068 5 chr2B.!!$F3 1667
2 TraesCS2B01G381100 chr2D 462244283 462249123 4840 False 588.222222 2619 90.571222 1 4236 9 chr2D.!!$F2 4235
3 TraesCS2B01G381100 chr2D 462784370 462786889 2519 False 243.533333 455 86.292833 1401 3068 6 chr2D.!!$F3 1667
4 TraesCS2B01G381100 chr2A 607516855 607522041 5186 False 647.125000 1548 92.011000 1 4305 8 chr2A.!!$F3 4304
5 TraesCS2B01G381100 chr2A 610234031 610234531 500 False 508.000000 508 84.892000 3187 3739 1 chr2A.!!$F2 552
6 TraesCS2B01G381100 chr2A 610209547 610211382 1835 False 459.750000 715 93.620000 507 2169 4 chr2A.!!$F5 1662
7 TraesCS2B01G381100 chr2A 607597822 607600323 2501 False 274.000000 435 87.852500 1397 2986 4 chr2A.!!$F4 1589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
843 847 0.686112 CCACAAATAACCCGGCCCAT 60.686 55.0 0.0 0.0 0.00 4.00 F
1186 1303 0.108945 AGGGTTTCGTCGTTCGGATC 60.109 55.0 0.0 0.0 40.32 3.36 F
2040 2778 0.179015 TTTGCCTTGCCGACTACCAA 60.179 50.0 0.0 0.0 0.00 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2471 3534 0.179045 AAGTGCCACAGCTCGTCTTT 60.179 50.000 0.00 0.00 40.8 2.52 R
2722 4182 1.202806 TCAACAAGCTCCTCACCCAAG 60.203 52.381 0.00 0.00 0.0 3.61 R
3902 5700 0.249238 TTCGGTTGTTTGCATGCCAC 60.249 50.000 16.68 12.63 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 2.860293 CGCTGATCGTGGCGTTTT 59.140 55.556 15.89 0.00 45.34 2.43
167 171 1.344438 TCATCCGAGTTGTTGCTCTGT 59.656 47.619 0.00 0.00 33.55 3.41
175 179 2.623889 AGTTGTTGCTCTGTACTCGACT 59.376 45.455 0.00 0.00 0.00 4.18
236 240 2.156446 CGTGCCGGTGCTACTTACG 61.156 63.158 1.90 0.00 38.71 3.18
243 247 2.164219 CCGGTGCTACTTACGTTAGGAA 59.836 50.000 6.52 0.00 0.00 3.36
244 248 3.432782 CGGTGCTACTTACGTTAGGAAG 58.567 50.000 6.52 4.40 0.00 3.46
259 263 2.122099 AAGAACGGGAGGGTGGGT 60.122 61.111 0.00 0.00 0.00 4.51
356 360 3.400054 GGGGTGGGGAAGGAGTCG 61.400 72.222 0.00 0.00 0.00 4.18
361 365 3.459063 GGGGAAGGAGTCGTCGGG 61.459 72.222 0.00 0.00 0.00 5.14
364 368 2.362120 GAAGGAGTCGTCGGGGGA 60.362 66.667 0.00 0.00 0.00 4.81
411 415 2.907897 GAAGGCGATCACCAGGACGG 62.908 65.000 1.91 0.00 42.50 4.79
429 433 4.399395 CGGAGAAGCAGGCCAGCA 62.399 66.667 23.38 0.00 36.85 4.41
685 689 1.080230 CCTCACTCACTCCAGTGCG 60.080 63.158 1.49 0.00 45.25 5.34
688 692 2.025969 CACTCACTCCAGTGCGCTG 61.026 63.158 20.56 20.56 45.25 5.18
843 847 0.686112 CCACAAATAACCCGGCCCAT 60.686 55.000 0.00 0.00 0.00 4.00
1098 1209 1.201921 GCCAACAAGTAATGCTCGACG 60.202 52.381 0.00 0.00 0.00 5.12
1103 1214 1.614241 AAGTAATGCTCGACGCCCCT 61.614 55.000 4.73 0.00 38.05 4.79
1105 1216 1.153449 TAATGCTCGACGCCCCTTG 60.153 57.895 4.73 0.00 38.05 3.61
1109 1220 4.821589 CTCGACGCCCCTTGCCTC 62.822 72.222 0.00 0.00 36.24 4.70
1118 1229 2.285668 CCTTGCCTCCCTCCCTCA 60.286 66.667 0.00 0.00 0.00 3.86
1119 1230 2.373707 CCTTGCCTCCCTCCCTCAG 61.374 68.421 0.00 0.00 0.00 3.35
1132 1243 1.316266 CCTCAGTCCCTCTCCCCAT 59.684 63.158 0.00 0.00 0.00 4.00
1136 1247 1.364678 TCAGTCCCTCTCCCCATAACA 59.635 52.381 0.00 0.00 0.00 2.41
1137 1248 1.486726 CAGTCCCTCTCCCCATAACAC 59.513 57.143 0.00 0.00 0.00 3.32
1150 1261 8.180165 TCTCCCCATAACACAGATTAGATCTAT 58.820 37.037 2.58 0.00 37.58 1.98
1162 1273 6.315144 CAGATTAGATCTATCCGTCGTCATCT 59.685 42.308 2.58 2.91 37.58 2.90
1164 1275 4.009370 AGATCTATCCGTCGTCATCTCA 57.991 45.455 0.00 0.00 0.00 3.27
1182 1293 3.444642 CGAGGGTTTCGTCGTTCG 58.555 61.111 0.00 0.00 44.27 3.95
1186 1303 0.108945 AGGGTTTCGTCGTTCGGATC 60.109 55.000 0.00 0.00 40.32 3.36
1209 1326 2.508891 GCGCTTCGTCATCTGGTCG 61.509 63.158 0.00 0.00 0.00 4.79
1215 1332 1.183030 TCGTCATCTGGTCGTTGGGT 61.183 55.000 0.00 0.00 0.00 4.51
1260 1425 0.694771 TGCCCTCTCATGTGCTCTTT 59.305 50.000 0.00 0.00 0.00 2.52
1262 1427 1.093159 CCCTCTCATGTGCTCTTTGC 58.907 55.000 0.00 0.00 43.25 3.68
1533 2018 5.863965 TGAGGTGTCATGTGAATTCTGTTA 58.136 37.500 7.05 0.00 0.00 2.41
1563 2048 6.490534 GCTATTGGCTTTGATAGTCTTGTTC 58.509 40.000 0.00 0.00 38.06 3.18
1582 2069 6.075762 TGTTCTGTTTGATTGTCTCATTGG 57.924 37.500 0.00 0.00 32.72 3.16
1591 2078 4.392754 TGATTGTCTCATTGGAATGACGTG 59.607 41.667 0.00 0.00 40.32 4.49
1615 2103 2.636647 TGGCAACAGTGATGAGTTCA 57.363 45.000 4.31 0.00 46.17 3.18
1742 2236 4.082787 CCTATTTGCCCAACAGTTACTGTG 60.083 45.833 19.33 12.40 44.62 3.66
1759 2253 3.572255 ACTGTGTGTGTTTGTGTCCTTTT 59.428 39.130 0.00 0.00 0.00 2.27
1846 2345 9.722056 CAGTTTTAGCAGACATGTAATTATTCC 57.278 33.333 0.00 0.00 0.00 3.01
1853 2352 3.486383 ACATGTAATTATTCCTGCGGGG 58.514 45.455 12.87 0.00 0.00 5.73
1898 2397 8.281531 TCACATCCAAGGGATTGAGTTATAATT 58.718 33.333 0.00 0.00 39.79 1.40
1935 2656 3.452990 TCGCACCCTTTATCTGGATAACA 59.547 43.478 2.90 0.00 33.40 2.41
1937 2658 4.273480 CGCACCCTTTATCTGGATAACAAG 59.727 45.833 2.90 0.35 33.40 3.16
2039 2777 0.887387 GTTTGCCTTGCCGACTACCA 60.887 55.000 0.00 0.00 0.00 3.25
2040 2778 0.179015 TTTGCCTTGCCGACTACCAA 60.179 50.000 0.00 0.00 0.00 3.67
2043 2781 1.173913 GCCTTGCCGACTACCAAAAT 58.826 50.000 0.00 0.00 0.00 1.82
2060 2799 4.097892 CCAAAATTTTCAGTCCCCCTATCG 59.902 45.833 0.00 0.00 0.00 2.92
2084 2823 6.197096 CGCATTATCTTATTGGTTTGCTGTTC 59.803 38.462 0.00 0.00 0.00 3.18
2173 2912 9.970395 TTCATGTGGAAAGCATAATTATCAATC 57.030 29.630 0.00 0.00 30.98 2.67
2250 2990 6.414079 GTGATGATTACAAGTGCATAGTTCG 58.586 40.000 0.00 0.00 0.00 3.95
2350 3099 8.712285 AATTGCATTTGAGAAATCATAACCTG 57.288 30.769 0.00 0.00 0.00 4.00
2368 3431 9.868277 CATAACCTGGCAAATTAAATTAACTGA 57.132 29.630 0.00 0.00 0.00 3.41
2410 3473 0.615331 TGGATGAGGTGGAGCTTGAC 59.385 55.000 0.00 0.00 0.00 3.18
2466 3529 8.868522 TTTTACTCTGATGTTCAGGAATCAAT 57.131 30.769 4.78 0.00 44.39 2.57
2581 4006 6.603237 TTTAGTGTCAGCATTGAATATCCG 57.397 37.500 0.00 0.00 34.49 4.18
2634 4062 3.975312 TCTTAGGTCCCACTTTGGTGTAA 59.025 43.478 0.00 0.00 41.53 2.41
2668 4104 9.604626 GATTGACTTTTGAATCTGACTTTGTAG 57.395 33.333 0.00 0.00 0.00 2.74
2722 4182 0.380378 ATGTGTTTGTGTCGTGTGCC 59.620 50.000 0.00 0.00 0.00 5.01
2727 4187 1.380403 TTTGTGTCGTGTGCCTTGGG 61.380 55.000 0.00 0.00 0.00 4.12
2751 4214 4.999950 TGAGGAGCTTGTTGAGATTTTCTC 59.000 41.667 0.00 0.00 43.65 2.87
2757 4220 4.692135 CTTGTTGAGATTTTCTCGTGTCG 58.308 43.478 0.47 0.00 46.25 4.35
2759 4222 4.116961 TGTTGAGATTTTCTCGTGTCGTT 58.883 39.130 0.47 0.00 46.25 3.85
2807 4277 6.945938 TGGAAGCACTCTTACTATCTACTC 57.054 41.667 0.00 0.00 34.16 2.59
2810 4280 6.768861 GGAAGCACTCTTACTATCTACTCTGA 59.231 42.308 0.00 0.00 31.48 3.27
2812 4282 7.744087 AGCACTCTTACTATCTACTCTGATG 57.256 40.000 0.00 0.00 0.00 3.07
2813 4283 7.287061 AGCACTCTTACTATCTACTCTGATGT 58.713 38.462 0.00 0.00 0.00 3.06
2903 4524 6.673839 TCGAGAATCTCTCATCTAGAGGTA 57.326 41.667 8.77 0.00 45.46 3.08
2904 4525 6.697395 TCGAGAATCTCTCATCTAGAGGTAG 58.303 44.000 8.77 4.00 45.46 3.18
2905 4526 5.351465 CGAGAATCTCTCATCTAGAGGTAGC 59.649 48.000 8.77 0.00 45.46 3.58
2906 4527 5.245531 AGAATCTCTCATCTAGAGGTAGCG 58.754 45.833 4.02 0.00 45.46 4.26
2907 4528 4.331968 AATCTCTCATCTAGAGGTAGCGG 58.668 47.826 4.02 0.00 45.46 5.52
2908 4529 1.810151 CTCTCATCTAGAGGTAGCGGC 59.190 57.143 4.02 0.00 46.98 6.53
2909 4530 1.143073 TCTCATCTAGAGGTAGCGGCA 59.857 52.381 4.02 0.00 44.81 5.69
2910 4531 1.268352 CTCATCTAGAGGTAGCGGCAC 59.732 57.143 4.02 0.00 40.84 5.01
2911 4532 1.133761 TCATCTAGAGGTAGCGGCACT 60.134 52.381 4.02 0.00 0.00 4.40
2912 4533 2.105993 TCATCTAGAGGTAGCGGCACTA 59.894 50.000 4.02 0.00 0.00 2.74
2921 4542 3.935993 AGCGGCACTACACTGATTT 57.064 47.368 1.45 0.00 0.00 2.17
2922 4543 2.185004 AGCGGCACTACACTGATTTT 57.815 45.000 1.45 0.00 0.00 1.82
2923 4544 1.806542 AGCGGCACTACACTGATTTTG 59.193 47.619 1.45 0.00 0.00 2.44
2924 4545 1.535462 GCGGCACTACACTGATTTTGT 59.465 47.619 0.00 0.00 0.00 2.83
2925 4546 2.739913 GCGGCACTACACTGATTTTGTA 59.260 45.455 0.00 0.00 0.00 2.41
2926 4547 3.374058 GCGGCACTACACTGATTTTGTAT 59.626 43.478 0.00 0.00 0.00 2.29
2927 4548 4.142687 GCGGCACTACACTGATTTTGTATT 60.143 41.667 0.00 0.00 0.00 1.89
2928 4549 5.064198 GCGGCACTACACTGATTTTGTATTA 59.936 40.000 0.00 0.00 0.00 0.98
2929 4550 6.475207 CGGCACTACACTGATTTTGTATTAC 58.525 40.000 0.00 0.00 0.00 1.89
2930 4551 6.475207 GGCACTACACTGATTTTGTATTACG 58.525 40.000 0.00 0.00 0.00 3.18
2931 4552 6.091713 GGCACTACACTGATTTTGTATTACGT 59.908 38.462 0.00 0.00 0.00 3.57
2932 4553 6.953743 GCACTACACTGATTTTGTATTACGTG 59.046 38.462 0.00 0.00 30.62 4.49
2982 4662 7.273381 CCAATTTCGGTTGAATATCAGTTTGAC 59.727 37.037 0.00 0.00 33.20 3.18
3005 4685 5.244626 ACAATTTCTTGGCAGAACATTAGCT 59.755 36.000 0.00 0.00 38.86 3.32
3175 4865 9.720769 TTCTTTACAGAGGGAGTAGTTTTTATG 57.279 33.333 0.00 0.00 0.00 1.90
3176 4866 7.822822 TCTTTACAGAGGGAGTAGTTTTTATGC 59.177 37.037 0.00 0.00 0.00 3.14
3177 4867 5.763876 ACAGAGGGAGTAGTTTTTATGCT 57.236 39.130 0.00 0.00 0.00 3.79
3178 4868 5.735766 ACAGAGGGAGTAGTTTTTATGCTC 58.264 41.667 0.00 0.00 0.00 4.26
3179 4869 5.248477 ACAGAGGGAGTAGTTTTTATGCTCA 59.752 40.000 0.00 0.00 31.71 4.26
3180 4870 6.069963 ACAGAGGGAGTAGTTTTTATGCTCAT 60.070 38.462 0.00 0.00 31.71 2.90
3181 4871 6.825721 CAGAGGGAGTAGTTTTTATGCTCATT 59.174 38.462 0.00 0.00 31.71 2.57
3182 4872 7.337942 CAGAGGGAGTAGTTTTTATGCTCATTT 59.662 37.037 0.00 0.00 31.71 2.32
3183 4873 7.337942 AGAGGGAGTAGTTTTTATGCTCATTTG 59.662 37.037 0.00 0.00 31.71 2.32
3184 4874 6.948309 AGGGAGTAGTTTTTATGCTCATTTGT 59.052 34.615 0.00 0.00 31.71 2.83
3185 4875 7.029563 GGGAGTAGTTTTTATGCTCATTTGTG 58.970 38.462 0.00 0.00 31.71 3.33
3228 4918 6.587226 CACCAGTTCACCACATTATTTGAATG 59.413 38.462 0.00 0.00 30.96 2.67
3254 4944 5.977129 GTGGGTTCGATTTTAATGCCTTATG 59.023 40.000 0.00 0.00 0.00 1.90
3293 4983 8.635765 ATCTGGTAATTTTTGCTTCTTACTCA 57.364 30.769 0.00 0.00 0.00 3.41
3307 4997 6.633234 GCTTCTTACTCAACAGTTAAACAAGC 59.367 38.462 0.00 0.00 33.62 4.01
3466 5157 0.528684 GCAGTGATGCCGACTCCTAC 60.529 60.000 0.00 0.00 0.00 3.18
3513 5204 0.975556 TCCTGCTATCAGCGTTCCCA 60.976 55.000 0.00 0.00 46.26 4.37
3514 5205 0.107456 CCTGCTATCAGCGTTCCCAT 59.893 55.000 0.00 0.00 46.26 4.00
3515 5206 1.344438 CCTGCTATCAGCGTTCCCATA 59.656 52.381 0.00 0.00 46.26 2.74
3635 5348 3.445008 TCATTCTACTCCTTGGCTGAGT 58.555 45.455 9.27 9.27 44.85 3.41
3689 5485 1.200519 ACTATGTAGCCTGCCGGAAA 58.799 50.000 5.05 0.00 0.00 3.13
3713 5511 7.516450 AAAATTCTAGAGGGATTCTCCTTGA 57.484 36.000 0.00 0.00 43.44 3.02
3771 5569 7.441760 TGTTTTATGACTAGTTTTTGCGGTCTA 59.558 33.333 0.00 0.00 0.00 2.59
3784 5582 4.729227 TGCGGTCTATCTGTTGTTATGA 57.271 40.909 0.00 0.00 0.00 2.15
3853 5651 6.974622 AGGAAATATCATCGTGTTCATTTTGC 59.025 34.615 0.00 0.00 0.00 3.68
3855 5653 2.610219 TCATCGTGTTCATTTTGCCG 57.390 45.000 0.00 0.00 0.00 5.69
3863 5661 2.854777 TGTTCATTTTGCCGTTTGTTCG 59.145 40.909 0.00 0.00 0.00 3.95
3902 5700 6.817765 TGTAGAAGCTTAGACATTTTTGGG 57.182 37.500 0.00 0.00 0.00 4.12
3907 5705 2.298729 GCTTAGACATTTTTGGGTGGCA 59.701 45.455 0.00 0.00 0.00 4.92
3909 5707 4.497300 CTTAGACATTTTTGGGTGGCATG 58.503 43.478 0.00 0.00 0.00 4.06
3920 5718 1.361993 GTGGCATGCAAACAACCGA 59.638 52.632 21.36 0.00 0.00 4.69
3936 5734 9.620660 CAAACAACCGAAAGCTATATTTTACTT 57.379 29.630 0.00 0.00 0.00 2.24
3940 5740 8.336080 CAACCGAAAGCTATATTTTACTTCCTC 58.664 37.037 0.00 0.00 0.00 3.71
4012 5812 7.119387 GGGTCTTATATTTTGATATGGAGGGG 58.881 42.308 0.00 0.00 0.00 4.79
4130 5931 1.050988 ACCCGGATCTGCACTGCTAT 61.051 55.000 0.73 0.00 0.00 2.97
4136 5937 2.357009 GGATCTGCACTGCTATTGGTTG 59.643 50.000 1.98 0.00 0.00 3.77
4137 5938 1.825090 TCTGCACTGCTATTGGTTGG 58.175 50.000 1.98 0.00 0.00 3.77
4138 5939 0.171903 CTGCACTGCTATTGGTTGGC 59.828 55.000 1.98 0.00 0.00 4.52
4139 5940 1.137404 GCACTGCTATTGGTTGGCG 59.863 57.895 0.00 0.00 0.00 5.69
4140 5941 1.802636 CACTGCTATTGGTTGGCGG 59.197 57.895 0.00 0.00 38.21 6.13
4141 5942 0.676466 CACTGCTATTGGTTGGCGGA 60.676 55.000 0.00 0.00 36.35 5.54
4142 5943 0.676782 ACTGCTATTGGTTGGCGGAC 60.677 55.000 0.00 0.00 36.35 4.79
4143 5944 1.705337 CTGCTATTGGTTGGCGGACG 61.705 60.000 0.00 0.00 34.61 4.79
4144 5945 1.743995 GCTATTGGTTGGCGGACGT 60.744 57.895 0.00 0.00 0.00 4.34
4145 5946 1.977594 GCTATTGGTTGGCGGACGTG 61.978 60.000 0.00 0.00 0.00 4.49
4146 5947 1.366111 CTATTGGTTGGCGGACGTGG 61.366 60.000 0.00 0.00 0.00 4.94
4147 5948 2.806503 TATTGGTTGGCGGACGTGGG 62.807 60.000 0.00 0.00 0.00 4.61
4154 5955 4.090588 GCGGACGTGGGGGAATGA 62.091 66.667 0.00 0.00 0.00 2.57
4155 5956 2.908015 CGGACGTGGGGGAATGAT 59.092 61.111 0.00 0.00 0.00 2.45
4156 5957 1.223487 CGGACGTGGGGGAATGATT 59.777 57.895 0.00 0.00 0.00 2.57
4230 6031 1.202463 ACAAATCCATCTCTCTCCGCG 60.202 52.381 0.00 0.00 0.00 6.46
4232 6033 2.093537 AATCCATCTCTCTCCGCGCC 62.094 60.000 0.00 0.00 0.00 6.53
4242 6043 2.680352 TCCGCGCCTCCTTTCTCT 60.680 61.111 0.00 0.00 0.00 3.10
4245 6046 0.105039 CCGCGCCTCCTTTCTCTTAT 59.895 55.000 0.00 0.00 0.00 1.73
4247 6048 2.395654 CGCGCCTCCTTTCTCTTATAC 58.604 52.381 0.00 0.00 0.00 1.47
4249 6050 3.252701 CGCGCCTCCTTTCTCTTATACTA 59.747 47.826 0.00 0.00 0.00 1.82
4250 6051 4.614078 CGCGCCTCCTTTCTCTTATACTAG 60.614 50.000 0.00 0.00 0.00 2.57
4251 6052 4.278919 GCGCCTCCTTTCTCTTATACTAGT 59.721 45.833 0.00 0.00 0.00 2.57
4252 6053 5.221283 GCGCCTCCTTTCTCTTATACTAGTT 60.221 44.000 0.00 0.00 0.00 2.24
4253 6054 6.683360 GCGCCTCCTTTCTCTTATACTAGTTT 60.683 42.308 0.00 0.00 0.00 2.66
4254 6055 6.919115 CGCCTCCTTTCTCTTATACTAGTTTC 59.081 42.308 0.00 0.00 0.00 2.78
4255 6056 7.201839 CGCCTCCTTTCTCTTATACTAGTTTCT 60.202 40.741 0.00 0.00 0.00 2.52
4256 6057 8.139350 GCCTCCTTTCTCTTATACTAGTTTCTC 58.861 40.741 0.00 0.00 0.00 2.87
4257 6058 9.416284 CCTCCTTTCTCTTATACTAGTTTCTCT 57.584 37.037 0.00 0.00 0.00 3.10
4271 6072 0.612174 TTCTCTCGGTGAGGTGAGGG 60.612 60.000 7.19 0.00 42.86 4.30
4277 6078 2.689034 GTGAGGTGAGGGAGGGGG 60.689 72.222 0.00 0.00 0.00 5.40
4278 6079 3.208592 TGAGGTGAGGGAGGGGGT 61.209 66.667 0.00 0.00 0.00 4.95
4280 6081 4.026357 AGGTGAGGGAGGGGGTCC 62.026 72.222 0.00 0.00 46.10 4.46
4281 6082 4.026357 GGTGAGGGAGGGGGTCCT 62.026 72.222 0.00 0.00 46.06 3.85
4283 6084 2.874245 TGAGGGAGGGGGTCCTGA 60.874 66.667 0.00 0.00 46.06 3.86
4285 6086 1.004891 GAGGGAGGGGGTCCTGATT 59.995 63.158 0.00 0.00 46.06 2.57
4286 6087 1.004891 AGGGAGGGGGTCCTGATTC 59.995 63.158 0.00 0.00 46.06 2.52
4305 6106 8.487028 CCTGATTCCTCCTGTTTATTACTACTT 58.513 37.037 0.00 0.00 0.00 2.24
4306 6107 9.535878 CTGATTCCTCCTGTTTATTACTACTTC 57.464 37.037 0.00 0.00 0.00 3.01
4307 6108 8.195436 TGATTCCTCCTGTTTATTACTACTTCG 58.805 37.037 0.00 0.00 0.00 3.79
4308 6109 7.472334 TTCCTCCTGTTTATTACTACTTCGT 57.528 36.000 0.00 0.00 0.00 3.85
4309 6110 7.093322 TCCTCCTGTTTATTACTACTTCGTC 57.907 40.000 0.00 0.00 0.00 4.20
4310 6111 6.096001 TCCTCCTGTTTATTACTACTTCGTCC 59.904 42.308 0.00 0.00 0.00 4.79
4311 6112 6.212888 TCCTGTTTATTACTACTTCGTCCC 57.787 41.667 0.00 0.00 0.00 4.46
4312 6113 5.716228 TCCTGTTTATTACTACTTCGTCCCA 59.284 40.000 0.00 0.00 0.00 4.37
4313 6114 5.809051 CCTGTTTATTACTACTTCGTCCCAC 59.191 44.000 0.00 0.00 0.00 4.61
4314 6115 6.343716 TGTTTATTACTACTTCGTCCCACA 57.656 37.500 0.00 0.00 0.00 4.17
4315 6116 6.757237 TGTTTATTACTACTTCGTCCCACAA 58.243 36.000 0.00 0.00 0.00 3.33
4316 6117 6.646240 TGTTTATTACTACTTCGTCCCACAAC 59.354 38.462 0.00 0.00 0.00 3.32
4317 6118 4.877378 ATTACTACTTCGTCCCACAACA 57.123 40.909 0.00 0.00 0.00 3.33
4318 6119 4.877378 TTACTACTTCGTCCCACAACAT 57.123 40.909 0.00 0.00 0.00 2.71
4319 6120 3.764237 ACTACTTCGTCCCACAACATT 57.236 42.857 0.00 0.00 0.00 2.71
4320 6121 4.081322 ACTACTTCGTCCCACAACATTT 57.919 40.909 0.00 0.00 0.00 2.32
4321 6122 4.457466 ACTACTTCGTCCCACAACATTTT 58.543 39.130 0.00 0.00 0.00 1.82
4322 6123 4.885325 ACTACTTCGTCCCACAACATTTTT 59.115 37.500 0.00 0.00 0.00 1.94
4323 6124 4.040445 ACTTCGTCCCACAACATTTTTG 57.960 40.909 0.00 0.00 0.00 2.44
4324 6125 2.500509 TCGTCCCACAACATTTTTGC 57.499 45.000 0.00 0.00 0.00 3.68
4325 6126 1.751351 TCGTCCCACAACATTTTTGCA 59.249 42.857 0.00 0.00 0.00 4.08
4326 6127 2.166459 TCGTCCCACAACATTTTTGCAA 59.834 40.909 0.00 0.00 0.00 4.08
4327 6128 2.539274 CGTCCCACAACATTTTTGCAAG 59.461 45.455 0.00 0.00 0.00 4.01
4328 6129 2.287644 GTCCCACAACATTTTTGCAAGC 59.712 45.455 0.00 0.00 0.00 4.01
4329 6130 1.261089 CCCACAACATTTTTGCAAGCG 59.739 47.619 0.00 0.00 0.00 4.68
4330 6131 2.200067 CCACAACATTTTTGCAAGCGA 58.800 42.857 0.00 0.00 0.00 4.93
4331 6132 2.801679 CCACAACATTTTTGCAAGCGAT 59.198 40.909 0.00 0.00 0.00 4.58
4332 6133 3.363182 CCACAACATTTTTGCAAGCGATG 60.363 43.478 13.79 13.79 0.00 3.84
4333 6134 3.245754 CACAACATTTTTGCAAGCGATGT 59.754 39.130 14.76 14.76 32.70 3.06
4334 6135 3.870419 ACAACATTTTTGCAAGCGATGTT 59.130 34.783 21.48 21.48 40.46 2.71
4335 6136 5.046529 ACAACATTTTTGCAAGCGATGTTA 58.953 33.333 24.26 0.00 38.48 2.41
4336 6137 5.175491 ACAACATTTTTGCAAGCGATGTTAG 59.825 36.000 24.26 21.06 38.48 2.34
4337 6138 3.674753 ACATTTTTGCAAGCGATGTTAGC 59.325 39.130 14.76 0.00 0.00 3.09
4346 6147 3.641437 AGCGATGTTAGCTTGCAAAAA 57.359 38.095 0.00 0.00 43.24 1.94
4347 6148 3.308530 AGCGATGTTAGCTTGCAAAAAC 58.691 40.909 0.00 6.33 43.24 2.43
4348 6149 3.049206 GCGATGTTAGCTTGCAAAAACA 58.951 40.909 18.48 18.48 36.37 2.83
4349 6150 3.674753 GCGATGTTAGCTTGCAAAAACAT 59.325 39.130 23.80 23.80 43.36 2.71
4350 6151 4.150451 GCGATGTTAGCTTGCAAAAACATT 59.850 37.500 24.13 14.38 41.37 2.71
4351 6152 5.333263 GCGATGTTAGCTTGCAAAAACATTT 60.333 36.000 24.13 12.31 41.37 2.32
4352 6153 6.648502 CGATGTTAGCTTGCAAAAACATTTT 58.351 32.000 24.13 11.81 41.37 1.82
4353 6154 7.568497 GCGATGTTAGCTTGCAAAAACATTTTA 60.568 33.333 24.13 6.98 41.37 1.52
4354 6155 8.434661 CGATGTTAGCTTGCAAAAACATTTTAT 58.565 29.630 24.13 11.30 41.37 1.40
4362 6163 9.437045 GCTTGCAAAAACATTTTATATTATGGC 57.563 29.630 0.00 0.00 0.00 4.40
4363 6164 9.635632 CTTGCAAAAACATTTTATATTATGGCG 57.364 29.630 0.00 0.00 0.00 5.69
4364 6165 8.136057 TGCAAAAACATTTTATATTATGGCGG 57.864 30.769 0.00 0.00 0.00 6.13
4365 6166 7.225538 TGCAAAAACATTTTATATTATGGCGGG 59.774 33.333 0.00 0.00 0.00 6.13
4366 6167 7.307692 GCAAAAACATTTTATATTATGGCGGGG 60.308 37.037 0.00 0.00 0.00 5.73
4367 6168 6.987403 AAACATTTTATATTATGGCGGGGT 57.013 33.333 0.00 0.00 0.00 4.95
4368 6169 5.975693 ACATTTTATATTATGGCGGGGTG 57.024 39.130 0.00 0.00 0.00 4.61
4369 6170 4.219725 ACATTTTATATTATGGCGGGGTGC 59.780 41.667 0.00 0.00 45.38 5.01
4378 6179 4.449391 GCGGGGTGCGTGTTATAT 57.551 55.556 0.00 0.00 0.00 0.86
4379 6180 2.697819 GCGGGGTGCGTGTTATATT 58.302 52.632 0.00 0.00 0.00 1.28
4380 6181 1.868469 GCGGGGTGCGTGTTATATTA 58.132 50.000 0.00 0.00 0.00 0.98
4381 6182 2.419667 GCGGGGTGCGTGTTATATTAT 58.580 47.619 0.00 0.00 0.00 1.28
4382 6183 2.158841 GCGGGGTGCGTGTTATATTATG 59.841 50.000 0.00 0.00 0.00 1.90
4383 6184 2.739913 CGGGGTGCGTGTTATATTATGG 59.260 50.000 0.00 0.00 0.00 2.74
4384 6185 3.746940 GGGGTGCGTGTTATATTATGGT 58.253 45.455 0.00 0.00 0.00 3.55
4385 6186 3.749609 GGGGTGCGTGTTATATTATGGTC 59.250 47.826 0.00 0.00 0.00 4.02
4386 6187 4.504340 GGGGTGCGTGTTATATTATGGTCT 60.504 45.833 0.00 0.00 0.00 3.85
4387 6188 4.451096 GGGTGCGTGTTATATTATGGTCTG 59.549 45.833 0.00 0.00 0.00 3.51
4388 6189 4.084013 GGTGCGTGTTATATTATGGTCTGC 60.084 45.833 0.00 0.00 0.00 4.26
4389 6190 3.738791 TGCGTGTTATATTATGGTCTGCG 59.261 43.478 0.00 0.00 0.00 5.18
4390 6191 3.122948 GCGTGTTATATTATGGTCTGCGG 59.877 47.826 0.00 0.00 0.00 5.69
4391 6192 4.304110 CGTGTTATATTATGGTCTGCGGT 58.696 43.478 0.00 0.00 0.00 5.68
4392 6193 4.748102 CGTGTTATATTATGGTCTGCGGTT 59.252 41.667 0.00 0.00 0.00 4.44
4393 6194 5.235616 CGTGTTATATTATGGTCTGCGGTTT 59.764 40.000 0.00 0.00 0.00 3.27
4394 6195 6.427150 GTGTTATATTATGGTCTGCGGTTTG 58.573 40.000 0.00 0.00 0.00 2.93
4395 6196 6.259167 GTGTTATATTATGGTCTGCGGTTTGA 59.741 38.462 0.00 0.00 0.00 2.69
4396 6197 6.995686 TGTTATATTATGGTCTGCGGTTTGAT 59.004 34.615 0.00 0.00 0.00 2.57
4397 6198 8.151596 TGTTATATTATGGTCTGCGGTTTGATA 58.848 33.333 0.00 0.00 0.00 2.15
4398 6199 9.162764 GTTATATTATGGTCTGCGGTTTGATAT 57.837 33.333 0.00 0.00 0.00 1.63
4399 6200 5.947228 ATTATGGTCTGCGGTTTGATATG 57.053 39.130 0.00 0.00 0.00 1.78
4400 6201 2.779755 TGGTCTGCGGTTTGATATGT 57.220 45.000 0.00 0.00 0.00 2.29
4401 6202 2.355197 TGGTCTGCGGTTTGATATGTG 58.645 47.619 0.00 0.00 0.00 3.21
4402 6203 2.290008 TGGTCTGCGGTTTGATATGTGT 60.290 45.455 0.00 0.00 0.00 3.72
4403 6204 2.351726 GGTCTGCGGTTTGATATGTGTC 59.648 50.000 0.00 0.00 0.00 3.67
4404 6205 3.000041 GTCTGCGGTTTGATATGTGTCA 59.000 45.455 0.00 0.00 0.00 3.58
4405 6206 3.623060 GTCTGCGGTTTGATATGTGTCAT 59.377 43.478 0.00 0.00 0.00 3.06
4406 6207 3.622612 TCTGCGGTTTGATATGTGTCATG 59.377 43.478 0.00 0.00 0.00 3.07
4407 6208 2.682352 TGCGGTTTGATATGTGTCATGG 59.318 45.455 0.00 0.00 0.00 3.66
4408 6209 2.942376 GCGGTTTGATATGTGTCATGGA 59.058 45.455 0.00 0.00 0.00 3.41
4409 6210 3.376859 GCGGTTTGATATGTGTCATGGAA 59.623 43.478 0.00 0.00 0.00 3.53
4410 6211 4.496341 GCGGTTTGATATGTGTCATGGAAG 60.496 45.833 0.00 0.00 0.00 3.46
4411 6212 4.875536 CGGTTTGATATGTGTCATGGAAGA 59.124 41.667 0.00 0.00 0.00 2.87
4412 6213 5.353956 CGGTTTGATATGTGTCATGGAAGAA 59.646 40.000 0.00 0.00 0.00 2.52
4413 6214 6.457392 CGGTTTGATATGTGTCATGGAAGAAG 60.457 42.308 0.00 0.00 0.00 2.85
4414 6215 6.599244 GGTTTGATATGTGTCATGGAAGAAGA 59.401 38.462 0.00 0.00 0.00 2.87
4415 6216 7.121168 GGTTTGATATGTGTCATGGAAGAAGAA 59.879 37.037 0.00 0.00 0.00 2.52
4416 6217 8.514594 GTTTGATATGTGTCATGGAAGAAGAAA 58.485 33.333 0.00 0.00 0.00 2.52
4417 6218 7.854557 TGATATGTGTCATGGAAGAAGAAAG 57.145 36.000 0.00 0.00 0.00 2.62
4418 6219 7.623630 TGATATGTGTCATGGAAGAAGAAAGA 58.376 34.615 0.00 0.00 0.00 2.52
4419 6220 7.767659 TGATATGTGTCATGGAAGAAGAAAGAG 59.232 37.037 0.00 0.00 0.00 2.85
4420 6221 5.296151 TGTGTCATGGAAGAAGAAAGAGT 57.704 39.130 0.00 0.00 0.00 3.24
4421 6222 5.684704 TGTGTCATGGAAGAAGAAAGAGTT 58.315 37.500 0.00 0.00 0.00 3.01
4422 6223 6.122277 TGTGTCATGGAAGAAGAAAGAGTTT 58.878 36.000 0.00 0.00 0.00 2.66
4423 6224 6.038603 TGTGTCATGGAAGAAGAAAGAGTTTG 59.961 38.462 0.00 0.00 0.00 2.93
4424 6225 6.260936 GTGTCATGGAAGAAGAAAGAGTTTGA 59.739 38.462 0.00 0.00 0.00 2.69
4425 6226 6.828273 TGTCATGGAAGAAGAAAGAGTTTGAA 59.172 34.615 0.00 0.00 0.00 2.69
4426 6227 7.012704 TGTCATGGAAGAAGAAAGAGTTTGAAG 59.987 37.037 0.00 0.00 0.00 3.02
4427 6228 7.227512 GTCATGGAAGAAGAAAGAGTTTGAAGA 59.772 37.037 0.00 0.00 0.00 2.87
4428 6229 7.941238 TCATGGAAGAAGAAAGAGTTTGAAGAT 59.059 33.333 0.00 0.00 0.00 2.40
4429 6230 7.736447 TGGAAGAAGAAAGAGTTTGAAGATC 57.264 36.000 0.00 0.00 0.00 2.75
4430 6231 7.512992 TGGAAGAAGAAAGAGTTTGAAGATCT 58.487 34.615 0.00 0.00 0.00 2.75
4431 6232 7.659390 TGGAAGAAGAAAGAGTTTGAAGATCTC 59.341 37.037 0.00 0.00 0.00 2.75
4432 6233 7.148656 GGAAGAAGAAAGAGTTTGAAGATCTCG 60.149 40.741 0.00 0.00 33.96 4.04
4433 6234 6.987386 AGAAGAAAGAGTTTGAAGATCTCGA 58.013 36.000 0.00 0.00 33.96 4.04
4434 6235 7.437748 AGAAGAAAGAGTTTGAAGATCTCGAA 58.562 34.615 0.00 0.00 33.96 3.71
4435 6236 7.598493 AGAAGAAAGAGTTTGAAGATCTCGAAG 59.402 37.037 0.00 0.00 33.96 3.79
4436 6237 6.987386 AGAAAGAGTTTGAAGATCTCGAAGA 58.013 36.000 0.00 0.00 33.96 2.87
4437 6238 7.610865 AGAAAGAGTTTGAAGATCTCGAAGAT 58.389 34.615 0.00 0.00 37.73 2.40
4438 6239 8.093927 AGAAAGAGTTTGAAGATCTCGAAGATT 58.906 33.333 0.00 0.00 34.53 2.40
4439 6240 8.614469 AAAGAGTTTGAAGATCTCGAAGATTT 57.386 30.769 0.00 0.00 34.53 2.17
4440 6241 7.593875 AGAGTTTGAAGATCTCGAAGATTTG 57.406 36.000 0.00 0.00 34.53 2.32
4441 6242 6.091986 AGAGTTTGAAGATCTCGAAGATTTGC 59.908 38.462 0.00 0.00 34.53 3.68
4442 6243 5.936956 AGTTTGAAGATCTCGAAGATTTGCT 59.063 36.000 0.00 0.00 34.53 3.91
4443 6244 6.091986 AGTTTGAAGATCTCGAAGATTTGCTC 59.908 38.462 0.00 0.00 34.53 4.26
4444 6245 4.108336 TGAAGATCTCGAAGATTTGCTCG 58.892 43.478 0.00 0.00 34.53 5.03
4445 6246 3.791973 AGATCTCGAAGATTTGCTCGT 57.208 42.857 0.00 0.00 34.53 4.18
4446 6247 4.116747 AGATCTCGAAGATTTGCTCGTT 57.883 40.909 0.00 0.00 34.53 3.85
4447 6248 4.499183 AGATCTCGAAGATTTGCTCGTTT 58.501 39.130 0.00 0.00 34.53 3.60
4448 6249 4.564769 AGATCTCGAAGATTTGCTCGTTTC 59.435 41.667 0.00 0.00 34.53 2.78
4449 6250 3.914312 TCTCGAAGATTTGCTCGTTTCT 58.086 40.909 0.00 0.00 33.89 2.52
4450 6251 4.307432 TCTCGAAGATTTGCTCGTTTCTT 58.693 39.130 0.00 0.00 33.89 2.52
4451 6252 4.750098 TCTCGAAGATTTGCTCGTTTCTTT 59.250 37.500 0.00 0.00 33.89 2.52
4452 6253 5.924254 TCTCGAAGATTTGCTCGTTTCTTTA 59.076 36.000 0.00 0.00 33.89 1.85
4453 6254 6.089551 TCTCGAAGATTTGCTCGTTTCTTTAG 59.910 38.462 0.00 0.00 33.89 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 0.825010 GGTCCCCTCTATAACGCCGA 60.825 60.000 0.00 0.00 0.00 5.54
167 171 2.393768 GGTGTCGCCGAGTCGAGTA 61.394 63.158 15.64 0.00 39.34 2.59
236 240 1.066358 CACCCTCCCGTTCTTCCTAAC 60.066 57.143 0.00 0.00 0.00 2.34
243 247 1.305887 CTACCCACCCTCCCGTTCT 60.306 63.158 0.00 0.00 0.00 3.01
244 248 2.364780 CCTACCCACCCTCCCGTTC 61.365 68.421 0.00 0.00 0.00 3.95
379 383 1.676529 TCGCCTTCTTCTACATCTCCG 59.323 52.381 0.00 0.00 0.00 4.63
385 389 2.166459 CTGGTGATCGCCTTCTTCTACA 59.834 50.000 25.23 1.54 0.00 2.74
429 433 4.988598 CGTGAGCACCAAGGCCGT 62.989 66.667 0.00 0.00 0.00 5.68
511 515 4.075793 CCCCGTCCTCCTCCTCCA 62.076 72.222 0.00 0.00 0.00 3.86
688 692 0.032952 TAACCGTCACACTGACCAGC 59.967 55.000 0.00 0.00 44.20 4.85
843 847 0.395862 CTAGGAAGCGAGGGACCTGA 60.396 60.000 0.00 0.00 34.42 3.86
1103 1214 1.613630 GACTGAGGGAGGGAGGCAA 60.614 63.158 0.00 0.00 0.00 4.52
1105 1216 2.766229 GGACTGAGGGAGGGAGGC 60.766 72.222 0.00 0.00 0.00 4.70
1106 1217 2.041405 GGGACTGAGGGAGGGAGG 60.041 72.222 0.00 0.00 0.00 4.30
1107 1218 1.075600 GAGGGACTGAGGGAGGGAG 60.076 68.421 0.00 0.00 41.55 4.30
1108 1219 1.547755 AGAGGGACTGAGGGAGGGA 60.548 63.158 0.00 0.00 41.55 4.20
1109 1220 1.075600 GAGAGGGACTGAGGGAGGG 60.076 68.421 0.00 0.00 41.55 4.30
1110 1221 1.075600 GGAGAGGGACTGAGGGAGG 60.076 68.421 0.00 0.00 41.55 4.30
1111 1222 1.075600 GGGAGAGGGACTGAGGGAG 60.076 68.421 0.00 0.00 41.55 4.30
1119 1230 1.486726 CTGTGTTATGGGGAGAGGGAC 59.513 57.143 0.00 0.00 0.00 4.46
1132 1243 6.709397 ACGACGGATAGATCTAATCTGTGTTA 59.291 38.462 21.49 0.00 40.51 2.41
1136 1247 5.306394 TGACGACGGATAGATCTAATCTGT 58.694 41.667 18.69 18.69 40.51 3.41
1137 1248 5.864628 TGACGACGGATAGATCTAATCTG 57.135 43.478 6.52 11.77 40.51 2.90
1150 1261 1.366854 CCTCGTGAGATGACGACGGA 61.367 60.000 0.00 0.00 43.26 4.69
1180 1291 2.719979 GAAGCGCTACCGATCCGA 59.280 61.111 12.05 0.00 36.29 4.55
1181 1292 2.726180 CGAAGCGCTACCGATCCG 60.726 66.667 22.58 9.43 36.29 4.18
1182 1293 1.657794 GACGAAGCGCTACCGATCC 60.658 63.158 30.23 17.96 36.29 3.36
1186 1303 1.064296 AGATGACGAAGCGCTACCG 59.936 57.895 24.45 24.45 37.57 4.02
1209 1326 0.037605 AACGAGACGATCCACCCAAC 60.038 55.000 0.00 0.00 0.00 3.77
1215 1332 2.011947 ACGATACAACGAGACGATCCA 58.988 47.619 0.00 0.00 37.03 3.41
1268 1433 0.108585 CGCCCTGCACCATAGGTAAT 59.891 55.000 0.00 0.00 32.11 1.89
1563 2048 6.805271 GTCATTCCAATGAGACAATCAAACAG 59.195 38.462 2.07 0.00 45.38 3.16
1582 2069 1.594194 TTGCCATGCCCACGTCATTC 61.594 55.000 0.00 0.00 0.00 2.67
1591 2078 0.966875 TCATCACTGTTGCCATGCCC 60.967 55.000 0.00 0.00 0.00 5.36
1615 2103 7.050377 CCACAAGAATCATTACAGGTCTGTAT 58.950 38.462 11.11 0.00 44.54 2.29
1638 2126 2.777094 TGAACTGTGCGATCATTTCCA 58.223 42.857 0.00 0.00 0.00 3.53
1706 2194 5.248020 TGGGCAAATAGGAAATGAAACACAT 59.752 36.000 0.00 0.00 41.45 3.21
1742 2236 5.227152 ACAAGAAAAAGGACACAAACACAC 58.773 37.500 0.00 0.00 0.00 3.82
1759 2253 4.973168 ACCAGCTCATAGTCAAACAAGAA 58.027 39.130 0.00 0.00 0.00 2.52
1813 2312 5.048504 ACATGTCTGCTAAAACTGTCATTGG 60.049 40.000 0.00 0.00 0.00 3.16
1820 2319 9.722056 GGAATAATTACATGTCTGCTAAAACTG 57.278 33.333 0.00 0.00 0.00 3.16
1846 2345 0.679505 TCTTCCGATTATCCCCGCAG 59.320 55.000 0.00 0.00 0.00 5.18
1853 2352 8.233190 GGATGTGATTTGAATCTTCCGATTATC 58.767 37.037 5.42 0.00 39.89 1.75
1898 2397 3.531538 GGTGCGATCAAGGTAATTCTCA 58.468 45.455 0.00 0.00 0.00 3.27
1988 2726 5.803967 AGTTATGACGAACGAGACCAAATAC 59.196 40.000 0.14 0.00 34.36 1.89
2039 2777 3.699538 GCGATAGGGGGACTGAAAATTTT 59.300 43.478 2.28 2.28 0.00 1.82
2040 2778 3.288092 GCGATAGGGGGACTGAAAATTT 58.712 45.455 0.00 0.00 0.00 1.82
2043 2781 1.281419 TGCGATAGGGGGACTGAAAA 58.719 50.000 0.00 0.00 0.00 2.29
2060 2799 7.260603 AGAACAGCAAACCAATAAGATAATGC 58.739 34.615 0.00 0.00 0.00 3.56
2084 2823 5.226396 TCATCGGCCAAACAAACAAAATAG 58.774 37.500 2.24 0.00 0.00 1.73
2142 2881 7.707624 AATTATGCTTTCCACATGAAGAGAA 57.292 32.000 0.00 0.00 33.63 2.87
2173 2912 5.106157 ACAAAGACAAACAGAGTTTGACCTG 60.106 40.000 24.45 19.39 33.31 4.00
2250 2990 3.679389 AGTCATCACAGTTTGGTCATCC 58.321 45.455 0.00 0.00 0.00 3.51
2318 3067 8.259049 TGATTTCTCAAATGCAATTTCAATCC 57.741 30.769 0.00 0.00 44.81 3.01
2350 3099 8.986477 ACTCACATCAGTTAATTTAATTTGCC 57.014 30.769 0.00 0.00 0.00 4.52
2368 3431 6.183360 CCAAAGTACAGAACACAAACTCACAT 60.183 38.462 0.00 0.00 0.00 3.21
2462 3525 2.300152 ACAGCTCGTCTTTCAGGATTGA 59.700 45.455 0.00 0.00 0.00 2.57
2466 3529 0.318441 CCACAGCTCGTCTTTCAGGA 59.682 55.000 0.00 0.00 0.00 3.86
2468 3531 0.601046 TGCCACAGCTCGTCTTTCAG 60.601 55.000 0.00 0.00 40.80 3.02
2469 3532 0.880278 GTGCCACAGCTCGTCTTTCA 60.880 55.000 0.00 0.00 40.80 2.69
2470 3533 0.601311 AGTGCCACAGCTCGTCTTTC 60.601 55.000 0.00 0.00 40.80 2.62
2471 3534 0.179045 AAGTGCCACAGCTCGTCTTT 60.179 50.000 0.00 0.00 40.80 2.52
2557 3849 6.992123 TCGGATATTCAATGCTGACACTAAAT 59.008 34.615 0.00 0.00 0.00 1.40
2581 4006 6.035866 GCGACATATGAAATCATCATCCTCTC 59.964 42.308 10.38 0.00 45.91 3.20
2634 4062 5.533903 AGATTCAAAAGTCAATCAGCACAGT 59.466 36.000 0.00 0.00 32.28 3.55
2722 4182 1.202806 TCAACAAGCTCCTCACCCAAG 60.203 52.381 0.00 0.00 0.00 3.61
2727 4187 4.759183 AGAAAATCTCAACAAGCTCCTCAC 59.241 41.667 0.00 0.00 0.00 3.51
2773 4236 3.262660 AGAGTGCTTCCATGACATCAGAA 59.737 43.478 0.00 0.00 0.00 3.02
2784 4247 6.544197 CAGAGTAGATAGTAAGAGTGCTTCCA 59.456 42.308 0.00 0.00 35.56 3.53
2903 4524 1.806542 CAAAATCAGTGTAGTGCCGCT 59.193 47.619 0.00 0.00 0.00 5.52
2904 4525 1.535462 ACAAAATCAGTGTAGTGCCGC 59.465 47.619 0.00 0.00 0.00 6.53
2905 4526 5.545658 AATACAAAATCAGTGTAGTGCCG 57.454 39.130 0.00 0.00 35.04 5.69
2906 4527 6.091713 ACGTAATACAAAATCAGTGTAGTGCC 59.908 38.462 0.00 0.00 35.04 5.01
2907 4528 6.953743 CACGTAATACAAAATCAGTGTAGTGC 59.046 38.462 0.00 0.00 35.04 4.40
2908 4529 8.234887 TCACGTAATACAAAATCAGTGTAGTG 57.765 34.615 0.00 0.00 35.04 2.74
2909 4530 8.821147 TTCACGTAATACAAAATCAGTGTAGT 57.179 30.769 0.00 0.00 35.04 2.73
2910 4531 9.689075 CATTCACGTAATACAAAATCAGTGTAG 57.311 33.333 0.00 0.00 35.04 2.74
2911 4532 9.210329 ACATTCACGTAATACAAAATCAGTGTA 57.790 29.630 0.00 0.00 35.98 2.90
2912 4533 8.094798 ACATTCACGTAATACAAAATCAGTGT 57.905 30.769 0.00 0.00 0.00 3.55
2913 4534 8.839914 CAACATTCACGTAATACAAAATCAGTG 58.160 33.333 0.00 0.00 0.00 3.66
2914 4535 7.537306 GCAACATTCACGTAATACAAAATCAGT 59.463 33.333 0.00 0.00 0.00 3.41
2915 4536 7.750458 AGCAACATTCACGTAATACAAAATCAG 59.250 33.333 0.00 0.00 0.00 2.90
2916 4537 7.589395 AGCAACATTCACGTAATACAAAATCA 58.411 30.769 0.00 0.00 0.00 2.57
2917 4538 7.748683 TGAGCAACATTCACGTAATACAAAATC 59.251 33.333 0.00 0.00 0.00 2.17
2918 4539 7.589395 TGAGCAACATTCACGTAATACAAAAT 58.411 30.769 0.00 0.00 0.00 1.82
2919 4540 6.960468 TGAGCAACATTCACGTAATACAAAA 58.040 32.000 0.00 0.00 0.00 2.44
2920 4541 6.546972 TGAGCAACATTCACGTAATACAAA 57.453 33.333 0.00 0.00 0.00 2.83
2921 4542 6.735678 ATGAGCAACATTCACGTAATACAA 57.264 33.333 0.00 0.00 35.45 2.41
2922 4543 6.735678 AATGAGCAACATTCACGTAATACA 57.264 33.333 0.00 0.00 44.77 2.29
2923 4544 9.716507 ATTAAATGAGCAACATTCACGTAATAC 57.283 29.630 9.03 0.00 46.90 1.89
2924 4545 9.715123 CATTAAATGAGCAACATTCACGTAATA 57.285 29.630 9.03 0.00 46.90 0.98
2925 4546 8.243426 ACATTAAATGAGCAACATTCACGTAAT 58.757 29.630 9.03 7.25 46.90 1.89
2926 4547 7.589395 ACATTAAATGAGCAACATTCACGTAA 58.411 30.769 9.03 5.68 46.90 3.18
2927 4548 7.139896 ACATTAAATGAGCAACATTCACGTA 57.860 32.000 9.03 0.00 46.90 3.57
2928 4549 6.012658 ACATTAAATGAGCAACATTCACGT 57.987 33.333 9.03 0.00 46.90 4.49
2929 4550 6.932901 AACATTAAATGAGCAACATTCACG 57.067 33.333 9.03 0.00 46.90 4.35
2930 4551 8.216453 GTGAAACATTAAATGAGCAACATTCAC 58.784 33.333 9.03 0.00 41.91 3.18
2931 4552 7.384660 GGTGAAACATTAAATGAGCAACATTCA 59.615 33.333 9.03 0.00 43.26 2.57
2932 4553 7.384660 TGGTGAAACATTAAATGAGCAACATTC 59.615 33.333 9.03 0.00 43.26 2.67
2982 4662 5.717119 AGCTAATGTTCTGCCAAGAAATTG 58.283 37.500 0.00 0.00 44.01 2.32
3167 4857 7.946237 CGATGAAACACAAATGAGCATAAAAAC 59.054 33.333 0.00 0.00 0.00 2.43
3169 4859 7.144661 ACGATGAAACACAAATGAGCATAAAA 58.855 30.769 0.00 0.00 0.00 1.52
3170 4860 6.676950 ACGATGAAACACAAATGAGCATAAA 58.323 32.000 0.00 0.00 0.00 1.40
3171 4861 6.252967 ACGATGAAACACAAATGAGCATAA 57.747 33.333 0.00 0.00 0.00 1.90
3172 4862 5.878332 ACGATGAAACACAAATGAGCATA 57.122 34.783 0.00 0.00 0.00 3.14
3173 4863 4.771590 ACGATGAAACACAAATGAGCAT 57.228 36.364 0.00 0.00 0.00 3.79
3174 4864 4.202000 ACAACGATGAAACACAAATGAGCA 60.202 37.500 0.00 0.00 0.00 4.26
3175 4865 4.146961 CACAACGATGAAACACAAATGAGC 59.853 41.667 0.00 0.00 0.00 4.26
3176 4866 4.676471 CCACAACGATGAAACACAAATGAG 59.324 41.667 0.00 0.00 0.00 2.90
3177 4867 4.605968 CCACAACGATGAAACACAAATGA 58.394 39.130 0.00 0.00 0.00 2.57
3178 4868 3.182173 GCCACAACGATGAAACACAAATG 59.818 43.478 0.00 0.00 0.00 2.32
3179 4869 3.181482 TGCCACAACGATGAAACACAAAT 60.181 39.130 0.00 0.00 0.00 2.32
3180 4870 2.164422 TGCCACAACGATGAAACACAAA 59.836 40.909 0.00 0.00 0.00 2.83
3181 4871 1.745653 TGCCACAACGATGAAACACAA 59.254 42.857 0.00 0.00 0.00 3.33
3182 4872 1.383523 TGCCACAACGATGAAACACA 58.616 45.000 0.00 0.00 0.00 3.72
3183 4873 2.031245 TGATGCCACAACGATGAAACAC 60.031 45.455 0.00 0.00 0.00 3.32
3184 4874 2.031245 GTGATGCCACAACGATGAAACA 60.031 45.455 0.00 0.00 42.72 2.83
3185 4875 2.584791 GTGATGCCACAACGATGAAAC 58.415 47.619 0.00 0.00 42.72 2.78
3228 4918 3.192633 AGGCATTAAAATCGAACCCACAC 59.807 43.478 0.00 0.00 0.00 3.82
3254 4944 9.855021 AAAATTACCAGATTAATGTTAGCACAC 57.145 29.630 0.00 0.00 35.03 3.82
3288 4978 4.748102 CCTCGCTTGTTTAACTGTTGAGTA 59.252 41.667 2.69 0.00 0.00 2.59
3293 4983 3.139077 CTCCCTCGCTTGTTTAACTGTT 58.861 45.455 0.00 0.00 0.00 3.16
3307 4997 1.000771 TCTGACACCTCCTCCCTCG 60.001 63.158 0.00 0.00 0.00 4.63
3515 5206 9.981460 ATCCAAAACTAGGATAAGAAAAGATGT 57.019 29.630 0.00 0.00 43.90 3.06
3605 5296 2.502947 AGGAGTAGAATGATGCTGTGCA 59.497 45.455 0.00 0.00 44.86 4.57
3609 5322 2.877168 GCCAAGGAGTAGAATGATGCTG 59.123 50.000 0.00 0.00 0.00 4.41
3615 5328 3.450457 AGACTCAGCCAAGGAGTAGAATG 59.550 47.826 0.00 0.00 45.21 2.67
3635 5348 7.550551 CCAGCATAGAAATTTGTAGAACTGAGA 59.449 37.037 16.92 0.00 0.00 3.27
3771 5569 4.012374 CAGCCAAGGTCATAACAACAGAT 58.988 43.478 0.00 0.00 0.00 2.90
3784 5582 2.834638 ATAGATTTGGCAGCCAAGGT 57.165 45.000 25.98 18.85 44.84 3.50
3824 5622 5.739959 TGAACACGATGATATTTCCTGGAA 58.260 37.500 4.68 4.68 0.00 3.53
3853 5651 0.859232 CTGGTCAGACGAACAAACGG 59.141 55.000 0.00 0.00 38.74 4.44
3855 5653 5.473796 TTAAACTGGTCAGACGAACAAAC 57.526 39.130 4.84 0.00 38.74 2.93
3863 5661 6.651225 AGCTTCTACATTTAAACTGGTCAGAC 59.349 38.462 4.84 0.00 0.00 3.51
3902 5700 0.249238 TTCGGTTGTTTGCATGCCAC 60.249 50.000 16.68 12.63 0.00 5.01
3907 5705 5.835113 ATATAGCTTTCGGTTGTTTGCAT 57.165 34.783 0.00 0.00 0.00 3.96
3909 5707 6.944557 AAAATATAGCTTTCGGTTGTTTGC 57.055 33.333 0.00 0.00 0.00 3.68
3968 5768 6.362248 AGACCCATTTTAACACTACAACAGT 58.638 36.000 0.00 0.00 38.32 3.55
3969 5769 6.877611 AGACCCATTTTAACACTACAACAG 57.122 37.500 0.00 0.00 0.00 3.16
3970 5770 8.927675 ATAAGACCCATTTTAACACTACAACA 57.072 30.769 0.00 0.00 0.00 3.33
3986 5786 7.257382 CCCCTCCATATCAAAATATAAGACCCA 60.257 40.741 0.00 0.00 0.00 4.51
4036 5837 9.547279 AAACCATAGAAGAATCCCACTTAAATT 57.453 29.630 0.00 0.00 0.00 1.82
4130 5931 4.939368 CCCACGTCCGCCAACCAA 62.939 66.667 0.00 0.00 0.00 3.67
4137 5938 2.886730 AATCATTCCCCCACGTCCGC 62.887 60.000 0.00 0.00 0.00 5.54
4138 5939 0.814010 GAATCATTCCCCCACGTCCG 60.814 60.000 0.00 0.00 0.00 4.79
4139 5940 0.465642 GGAATCATTCCCCCACGTCC 60.466 60.000 4.89 0.00 44.30 4.79
4140 5941 3.095922 GGAATCATTCCCCCACGTC 57.904 57.895 4.89 0.00 44.30 4.34
4149 5950 6.151817 AGAGTTAGCAAAACCAGGAATCATTC 59.848 38.462 0.00 0.00 0.00 2.67
4151 5952 5.574188 AGAGTTAGCAAAACCAGGAATCAT 58.426 37.500 0.00 0.00 0.00 2.45
4152 5953 4.985538 AGAGTTAGCAAAACCAGGAATCA 58.014 39.130 0.00 0.00 0.00 2.57
4153 5954 5.938125 TGTAGAGTTAGCAAAACCAGGAATC 59.062 40.000 0.00 0.00 0.00 2.52
4154 5955 5.876357 TGTAGAGTTAGCAAAACCAGGAAT 58.124 37.500 0.00 0.00 0.00 3.01
4155 5956 5.298989 TGTAGAGTTAGCAAAACCAGGAA 57.701 39.130 0.00 0.00 0.00 3.36
4156 5957 4.967084 TGTAGAGTTAGCAAAACCAGGA 57.033 40.909 0.00 0.00 0.00 3.86
4220 6021 2.621371 GAAAGGAGGCGCGGAGAGAG 62.621 65.000 8.83 0.00 0.00 3.20
4230 6031 8.014070 AGAAACTAGTATAAGAGAAAGGAGGC 57.986 38.462 0.00 0.00 0.00 4.70
4254 6055 1.000771 TCCCTCACCTCACCGAGAG 60.001 63.158 0.00 0.00 44.31 3.20
4255 6056 1.000771 CTCCCTCACCTCACCGAGA 60.001 63.158 0.00 0.00 0.00 4.04
4256 6057 2.055042 CCTCCCTCACCTCACCGAG 61.055 68.421 0.00 0.00 0.00 4.63
4257 6058 2.037367 CCTCCCTCACCTCACCGA 59.963 66.667 0.00 0.00 0.00 4.69
4258 6059 3.077556 CCCTCCCTCACCTCACCG 61.078 72.222 0.00 0.00 0.00 4.94
4271 6072 1.057275 GGAGGAATCAGGACCCCCTC 61.057 65.000 0.00 0.00 42.02 4.30
4277 6078 6.890293 AGTAATAAACAGGAGGAATCAGGAC 58.110 40.000 0.00 0.00 0.00 3.85
4278 6079 7.844779 AGTAGTAATAAACAGGAGGAATCAGGA 59.155 37.037 0.00 0.00 0.00 3.86
4280 6081 9.535878 GAAGTAGTAATAAACAGGAGGAATCAG 57.464 37.037 0.00 0.00 0.00 2.90
4281 6082 8.195436 CGAAGTAGTAATAAACAGGAGGAATCA 58.805 37.037 0.00 0.00 0.00 2.57
4283 6084 8.075761 ACGAAGTAGTAATAAACAGGAGGAAT 57.924 34.615 0.00 0.00 41.94 3.01
4305 6106 1.751351 TGCAAAAATGTTGTGGGACGA 59.249 42.857 0.00 0.00 0.00 4.20
4306 6107 2.215907 TGCAAAAATGTTGTGGGACG 57.784 45.000 0.00 0.00 0.00 4.79
4307 6108 2.287644 GCTTGCAAAAATGTTGTGGGAC 59.712 45.455 0.00 0.00 0.00 4.46
4308 6109 2.559440 GCTTGCAAAAATGTTGTGGGA 58.441 42.857 0.00 0.00 0.00 4.37
4309 6110 1.261089 CGCTTGCAAAAATGTTGTGGG 59.739 47.619 0.00 0.00 0.00 4.61
4310 6111 2.200067 TCGCTTGCAAAAATGTTGTGG 58.800 42.857 0.00 0.00 0.00 4.17
4311 6112 3.245754 ACATCGCTTGCAAAAATGTTGTG 59.754 39.130 12.71 1.99 0.00 3.33
4312 6113 3.456280 ACATCGCTTGCAAAAATGTTGT 58.544 36.364 12.71 6.51 0.00 3.32
4313 6114 4.455917 AACATCGCTTGCAAAAATGTTG 57.544 36.364 22.77 11.86 38.69 3.33
4314 6115 4.150451 GCTAACATCGCTTGCAAAAATGTT 59.850 37.500 24.91 24.91 41.83 2.71
4315 6116 3.674753 GCTAACATCGCTTGCAAAAATGT 59.325 39.130 12.71 12.71 32.15 2.71
4316 6117 3.922240 AGCTAACATCGCTTGCAAAAATG 59.078 39.130 0.00 7.16 32.98 2.32
4317 6118 4.178545 AGCTAACATCGCTTGCAAAAAT 57.821 36.364 0.00 0.00 32.98 1.82
4318 6119 3.641437 AGCTAACATCGCTTGCAAAAA 57.359 38.095 0.00 0.00 32.98 1.94
4319 6120 3.641437 AAGCTAACATCGCTTGCAAAA 57.359 38.095 0.00 0.00 45.30 2.44
4326 6127 3.243367 TGTTTTTGCAAGCTAACATCGCT 60.243 39.130 15.53 0.00 39.94 4.93
4327 6128 3.049206 TGTTTTTGCAAGCTAACATCGC 58.951 40.909 15.53 0.00 0.00 4.58
4328 6129 5.827568 AATGTTTTTGCAAGCTAACATCG 57.172 34.783 24.44 0.00 39.55 3.84
4336 6137 9.437045 GCCATAATATAAAATGTTTTTGCAAGC 57.563 29.630 0.00 0.00 0.00 4.01
4337 6138 9.635632 CGCCATAATATAAAATGTTTTTGCAAG 57.364 29.630 0.00 0.00 0.00 4.01
4338 6139 8.607459 CCGCCATAATATAAAATGTTTTTGCAA 58.393 29.630 0.00 0.00 0.00 4.08
4339 6140 7.225538 CCCGCCATAATATAAAATGTTTTTGCA 59.774 33.333 0.00 0.00 0.00 4.08
4340 6141 7.307692 CCCCGCCATAATATAAAATGTTTTTGC 60.308 37.037 0.00 0.00 0.00 3.68
4341 6142 7.713073 ACCCCGCCATAATATAAAATGTTTTTG 59.287 33.333 0.00 0.00 0.00 2.44
4342 6143 7.713073 CACCCCGCCATAATATAAAATGTTTTT 59.287 33.333 0.00 0.00 0.00 1.94
4343 6144 7.213678 CACCCCGCCATAATATAAAATGTTTT 58.786 34.615 0.00 0.00 0.00 2.43
4344 6145 6.740122 GCACCCCGCCATAATATAAAATGTTT 60.740 38.462 0.00 0.00 32.94 2.83
4345 6146 5.279256 GCACCCCGCCATAATATAAAATGTT 60.279 40.000 0.00 0.00 32.94 2.71
4346 6147 4.219725 GCACCCCGCCATAATATAAAATGT 59.780 41.667 0.00 0.00 32.94 2.71
4347 6148 4.674101 CGCACCCCGCCATAATATAAAATG 60.674 45.833 0.00 0.00 37.30 2.32
4348 6149 3.442273 CGCACCCCGCCATAATATAAAAT 59.558 43.478 0.00 0.00 37.30 1.82
4349 6150 2.814919 CGCACCCCGCCATAATATAAAA 59.185 45.455 0.00 0.00 37.30 1.52
4350 6151 2.224572 ACGCACCCCGCCATAATATAAA 60.225 45.455 0.00 0.00 41.76 1.40
4351 6152 1.348366 ACGCACCCCGCCATAATATAA 59.652 47.619 0.00 0.00 41.76 0.98
4352 6153 0.978151 ACGCACCCCGCCATAATATA 59.022 50.000 0.00 0.00 41.76 0.86
4353 6154 0.605319 CACGCACCCCGCCATAATAT 60.605 55.000 0.00 0.00 41.76 1.28
4354 6155 1.227704 CACGCACCCCGCCATAATA 60.228 57.895 0.00 0.00 41.76 0.98
4355 6156 2.515991 CACGCACCCCGCCATAAT 60.516 61.111 0.00 0.00 41.76 1.28
4356 6157 2.181445 TAACACGCACCCCGCCATAA 62.181 55.000 0.00 0.00 41.76 1.90
4357 6158 1.973816 ATAACACGCACCCCGCCATA 61.974 55.000 0.00 0.00 41.76 2.74
4358 6159 1.973816 TATAACACGCACCCCGCCAT 61.974 55.000 0.00 0.00 41.76 4.40
4359 6160 1.973816 ATATAACACGCACCCCGCCA 61.974 55.000 0.00 0.00 41.76 5.69
4360 6161 0.816421 AATATAACACGCACCCCGCC 60.816 55.000 0.00 0.00 41.76 6.13
4361 6162 1.868469 TAATATAACACGCACCCCGC 58.132 50.000 0.00 0.00 41.76 6.13
4362 6163 2.739913 CCATAATATAACACGCACCCCG 59.260 50.000 0.00 0.00 44.21 5.73
4363 6164 3.746940 ACCATAATATAACACGCACCCC 58.253 45.455 0.00 0.00 0.00 4.95
4364 6165 4.451096 CAGACCATAATATAACACGCACCC 59.549 45.833 0.00 0.00 0.00 4.61
4365 6166 4.084013 GCAGACCATAATATAACACGCACC 60.084 45.833 0.00 0.00 0.00 5.01
4366 6167 4.376008 CGCAGACCATAATATAACACGCAC 60.376 45.833 0.00 0.00 0.00 5.34
4367 6168 3.738791 CGCAGACCATAATATAACACGCA 59.261 43.478 0.00 0.00 0.00 5.24
4368 6169 3.122948 CCGCAGACCATAATATAACACGC 59.877 47.826 0.00 0.00 0.00 5.34
4369 6170 4.304110 ACCGCAGACCATAATATAACACG 58.696 43.478 0.00 0.00 0.00 4.49
4370 6171 6.259167 TCAAACCGCAGACCATAATATAACAC 59.741 38.462 0.00 0.00 0.00 3.32
4371 6172 6.350103 TCAAACCGCAGACCATAATATAACA 58.650 36.000 0.00 0.00 0.00 2.41
4372 6173 6.854496 TCAAACCGCAGACCATAATATAAC 57.146 37.500 0.00 0.00 0.00 1.89
4373 6174 9.161629 CATATCAAACCGCAGACCATAATATAA 57.838 33.333 0.00 0.00 0.00 0.98
4374 6175 8.318412 ACATATCAAACCGCAGACCATAATATA 58.682 33.333 0.00 0.00 0.00 0.86
4375 6176 7.119699 CACATATCAAACCGCAGACCATAATAT 59.880 37.037 0.00 0.00 0.00 1.28
4376 6177 6.426633 CACATATCAAACCGCAGACCATAATA 59.573 38.462 0.00 0.00 0.00 0.98
4377 6178 5.239306 CACATATCAAACCGCAGACCATAAT 59.761 40.000 0.00 0.00 0.00 1.28
4378 6179 4.574421 CACATATCAAACCGCAGACCATAA 59.426 41.667 0.00 0.00 0.00 1.90
4379 6180 4.126437 CACATATCAAACCGCAGACCATA 58.874 43.478 0.00 0.00 0.00 2.74
4380 6181 2.945008 CACATATCAAACCGCAGACCAT 59.055 45.455 0.00 0.00 0.00 3.55
4381 6182 2.290008 ACACATATCAAACCGCAGACCA 60.290 45.455 0.00 0.00 0.00 4.02
4382 6183 2.351726 GACACATATCAAACCGCAGACC 59.648 50.000 0.00 0.00 0.00 3.85
4383 6184 3.000041 TGACACATATCAAACCGCAGAC 59.000 45.455 0.00 0.00 0.00 3.51
4384 6185 3.326836 TGACACATATCAAACCGCAGA 57.673 42.857 0.00 0.00 0.00 4.26
4385 6186 3.242837 CCATGACACATATCAAACCGCAG 60.243 47.826 0.00 0.00 30.82 5.18
4386 6187 2.682352 CCATGACACATATCAAACCGCA 59.318 45.455 0.00 0.00 30.82 5.69
4387 6188 2.942376 TCCATGACACATATCAAACCGC 59.058 45.455 0.00 0.00 30.82 5.68
4388 6189 4.875536 TCTTCCATGACACATATCAAACCG 59.124 41.667 0.00 0.00 30.82 4.44
4389 6190 6.599244 TCTTCTTCCATGACACATATCAAACC 59.401 38.462 0.00 0.00 30.82 3.27
4390 6191 7.615582 TCTTCTTCCATGACACATATCAAAC 57.384 36.000 0.00 0.00 30.82 2.93
4391 6192 8.634335 TTTCTTCTTCCATGACACATATCAAA 57.366 30.769 0.00 0.00 30.82 2.69
4392 6193 8.102676 TCTTTCTTCTTCCATGACACATATCAA 58.897 33.333 0.00 0.00 30.82 2.57
4393 6194 7.623630 TCTTTCTTCTTCCATGACACATATCA 58.376 34.615 0.00 0.00 0.00 2.15
4394 6195 7.768120 ACTCTTTCTTCTTCCATGACACATATC 59.232 37.037 0.00 0.00 0.00 1.63
4395 6196 7.628234 ACTCTTTCTTCTTCCATGACACATAT 58.372 34.615 0.00 0.00 0.00 1.78
4396 6197 7.009179 ACTCTTTCTTCTTCCATGACACATA 57.991 36.000 0.00 0.00 0.00 2.29
4397 6198 5.874093 ACTCTTTCTTCTTCCATGACACAT 58.126 37.500 0.00 0.00 0.00 3.21
4398 6199 5.296151 ACTCTTTCTTCTTCCATGACACA 57.704 39.130 0.00 0.00 0.00 3.72
4399 6200 6.260936 TCAAACTCTTTCTTCTTCCATGACAC 59.739 38.462 0.00 0.00 0.00 3.67
4400 6201 6.356556 TCAAACTCTTTCTTCTTCCATGACA 58.643 36.000 0.00 0.00 0.00 3.58
4401 6202 6.867662 TCAAACTCTTTCTTCTTCCATGAC 57.132 37.500 0.00 0.00 0.00 3.06
4402 6203 7.282585 TCTTCAAACTCTTTCTTCTTCCATGA 58.717 34.615 0.00 0.00 0.00 3.07
4403 6204 7.502120 TCTTCAAACTCTTTCTTCTTCCATG 57.498 36.000 0.00 0.00 0.00 3.66
4404 6205 8.162746 AGATCTTCAAACTCTTTCTTCTTCCAT 58.837 33.333 0.00 0.00 0.00 3.41
4405 6206 7.512992 AGATCTTCAAACTCTTTCTTCTTCCA 58.487 34.615 0.00 0.00 0.00 3.53
4406 6207 7.148656 CGAGATCTTCAAACTCTTTCTTCTTCC 60.149 40.741 0.00 0.00 0.00 3.46
4407 6208 7.596995 TCGAGATCTTCAAACTCTTTCTTCTTC 59.403 37.037 0.00 0.00 0.00 2.87
4408 6209 7.437748 TCGAGATCTTCAAACTCTTTCTTCTT 58.562 34.615 0.00 0.00 0.00 2.52
4409 6210 6.987386 TCGAGATCTTCAAACTCTTTCTTCT 58.013 36.000 0.00 0.00 0.00 2.85
4410 6211 7.596995 TCTTCGAGATCTTCAAACTCTTTCTTC 59.403 37.037 0.00 0.00 0.00 2.87
4411 6212 7.437748 TCTTCGAGATCTTCAAACTCTTTCTT 58.562 34.615 0.00 0.00 0.00 2.52
4412 6213 6.987386 TCTTCGAGATCTTCAAACTCTTTCT 58.013 36.000 0.00 0.00 0.00 2.52
4413 6214 7.826260 ATCTTCGAGATCTTCAAACTCTTTC 57.174 36.000 0.00 0.00 25.75 2.62
4414 6215 8.502387 CAAATCTTCGAGATCTTCAAACTCTTT 58.498 33.333 0.00 0.00 32.89 2.52
4415 6216 7.360776 GCAAATCTTCGAGATCTTCAAACTCTT 60.361 37.037 0.00 0.00 32.89 2.85
4416 6217 6.091986 GCAAATCTTCGAGATCTTCAAACTCT 59.908 38.462 0.00 0.00 32.89 3.24
4417 6218 6.091986 AGCAAATCTTCGAGATCTTCAAACTC 59.908 38.462 0.00 0.00 32.89 3.01
4418 6219 5.936956 AGCAAATCTTCGAGATCTTCAAACT 59.063 36.000 0.00 0.00 32.89 2.66
4419 6220 6.175712 AGCAAATCTTCGAGATCTTCAAAC 57.824 37.500 0.00 0.00 32.89 2.93
4420 6221 5.062683 CGAGCAAATCTTCGAGATCTTCAAA 59.937 40.000 0.00 0.00 32.89 2.69
4421 6222 4.564372 CGAGCAAATCTTCGAGATCTTCAA 59.436 41.667 0.00 0.00 32.89 2.69
4422 6223 4.108336 CGAGCAAATCTTCGAGATCTTCA 58.892 43.478 0.00 0.00 32.89 3.02
4423 6224 4.109050 ACGAGCAAATCTTCGAGATCTTC 58.891 43.478 0.00 0.00 32.89 2.87
4424 6225 4.116747 ACGAGCAAATCTTCGAGATCTT 57.883 40.909 0.00 0.00 32.89 2.40
4425 6226 3.791973 ACGAGCAAATCTTCGAGATCT 57.208 42.857 0.00 0.00 32.89 2.75
4426 6227 4.564769 AGAAACGAGCAAATCTTCGAGATC 59.435 41.667 0.51 0.00 32.89 2.75
4427 6228 4.499183 AGAAACGAGCAAATCTTCGAGAT 58.501 39.130 0.51 0.00 36.28 2.75
4428 6229 3.914312 AGAAACGAGCAAATCTTCGAGA 58.086 40.909 0.51 0.00 0.00 4.04
4429 6230 4.653806 AAGAAACGAGCAAATCTTCGAG 57.346 40.909 0.51 0.00 0.00 4.04
4430 6231 6.153212 CTAAAGAAACGAGCAAATCTTCGA 57.847 37.500 0.51 0.00 31.20 3.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.