Multiple sequence alignment - TraesCS2B01G380400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G380400 chr2B 100.000 3387 0 0 1 3387 544712235 544708849 0.000000e+00 6255.0
1 TraesCS2B01G380400 chr2B 94.605 1631 58 21 735 2363 544282211 544280609 0.000000e+00 2497.0
2 TraesCS2B01G380400 chr2B 92.940 1629 84 22 735 2361 543852086 543850487 0.000000e+00 2342.0
3 TraesCS2B01G380400 chr2B 99.116 1018 9 0 2370 3387 544280440 544279423 0.000000e+00 1831.0
4 TraesCS2B01G380400 chr2B 96.774 31 1 0 1660 1690 318883 318853 6.000000e-03 52.8
5 TraesCS2B01G380400 chr2D 90.416 2066 118 39 333 2362 461803672 461801651 0.000000e+00 2645.0
6 TraesCS2B01G380400 chr2D 87.344 719 58 24 735 1451 461674193 461673506 0.000000e+00 793.0
7 TraesCS2B01G380400 chr2D 92.520 508 34 3 1553 2058 461673445 461672940 0.000000e+00 725.0
8 TraesCS2B01G380400 chr2D 93.204 309 21 0 2053 2361 461660005 461659697 3.980000e-124 455.0
9 TraesCS2B01G380400 chr2A 91.201 1648 103 20 724 2362 606814929 606813315 0.000000e+00 2202.0
10 TraesCS2B01G380400 chr2A 95.238 819 38 1 1545 2362 606712073 606711255 0.000000e+00 1295.0
11 TraesCS2B01G380400 chr2A 89.637 772 45 11 700 1455 606712965 606712213 0.000000e+00 950.0
12 TraesCS2B01G380400 chr2A 87.336 229 18 5 332 550 606816534 606816307 5.610000e-63 252.0
13 TraesCS2B01G380400 chr2A 85.542 83 10 2 469 550 606776008 606775927 6.020000e-13 86.1
14 TraesCS2B01G380400 chr5B 97.872 329 7 0 1 329 399398599 399398927 1.360000e-158 569.0
15 TraesCS2B01G380400 chr5B 94.207 328 19 0 1 328 350371590 350371263 5.050000e-138 501.0
16 TraesCS2B01G380400 chr7A 96.646 328 10 1 1 328 567442079 567442405 8.270000e-151 544.0
17 TraesCS2B01G380400 chr7A 93.137 102 6 1 2478 2578 608390524 608390625 7.570000e-32 148.0
18 TraesCS2B01G380400 chr7A 91.262 103 8 1 2477 2578 102037248 102037350 4.560000e-29 139.0
19 TraesCS2B01G380400 chr4B 87.826 460 56 0 996 1455 661122079 661121620 1.070000e-149 540.0
20 TraesCS2B01G380400 chr4B 79.211 558 79 23 2577 3131 622614468 622613945 1.500000e-93 353.0
21 TraesCS2B01G380400 chr4B 96.875 32 1 0 3137 3168 622613852 622613821 2.000000e-03 54.7
22 TraesCS2B01G380400 chr3D 96.853 286 8 1 43 328 11783040 11782756 8.500000e-131 477.0
23 TraesCS2B01G380400 chr3D 80.901 555 82 16 2581 3134 362019822 362019291 1.880000e-112 416.0
24 TraesCS2B01G380400 chr3D 78.261 161 21 12 156 308 556612791 556612945 1.290000e-14 91.6
25 TraesCS2B01G380400 chr7B 95.652 253 10 1 77 329 750142303 750142554 4.070000e-109 405.0
26 TraesCS2B01G380400 chr7B 97.778 225 5 0 3163 3387 340547800 340547576 4.100000e-104 388.0
27 TraesCS2B01G380400 chr7B 78.771 179 26 10 156 328 626584224 626584052 3.570000e-20 110.0
28 TraesCS2B01G380400 chr7B 97.436 39 1 0 3096 3134 63372747 63372709 2.180000e-07 67.6
29 TraesCS2B01G380400 chrUn 96.957 230 7 0 3158 3387 6622871 6622642 1.470000e-103 387.0
30 TraesCS2B01G380400 chrUn 96.203 237 6 3 3153 3387 13991202 13991437 5.300000e-103 385.0
31 TraesCS2B01G380400 chr3B 96.970 231 5 2 3159 3387 357749263 357749493 1.470000e-103 387.0
32 TraesCS2B01G380400 chr3B 90.090 111 7 4 2470 2578 473859678 473859786 1.270000e-29 141.0
33 TraesCS2B01G380400 chr1B 96.970 231 5 2 3159 3387 213533520 213533750 1.470000e-103 387.0
34 TraesCS2B01G380400 chr1D 96.137 233 9 0 3155 3387 159660566 159660334 6.860000e-102 381.0
35 TraesCS2B01G380400 chr1D 92.727 110 7 1 2370 2479 481307739 481307847 1.260000e-34 158.0
36 TraesCS2B01G380400 chr1D 90.000 110 10 1 2470 2578 169806130 169806239 1.270000e-29 141.0
37 TraesCS2B01G380400 chr1D 96.875 32 1 0 3137 3168 364126926 364126957 2.000000e-03 54.7
38 TraesCS2B01G380400 chr6D 95.021 241 10 2 3147 3387 307541889 307541651 8.870000e-101 377.0
39 TraesCS2B01G380400 chr3A 94.024 251 11 2 3137 3387 717167822 717167576 8.870000e-101 377.0
40 TraesCS2B01G380400 chr3A 90.566 106 8 2 2474 2578 22046454 22046350 4.560000e-29 139.0
41 TraesCS2B01G380400 chr6A 94.167 240 14 0 88 327 73447084 73446845 1.920000e-97 366.0
42 TraesCS2B01G380400 chr6A 92.157 102 7 1 2478 2578 572408032 572408133 3.520000e-30 143.0
43 TraesCS2B01G380400 chr7D 93.204 103 6 1 2477 2578 59727208 59727310 2.110000e-32 150.0
44 TraesCS2B01G380400 chr6B 92.233 103 6 2 2478 2578 63366849 63366747 9.800000e-31 145.0
45 TraesCS2B01G380400 chr1A 86.022 93 12 1 236 328 585391984 585391893 7.730000e-17 99.0
46 TraesCS2B01G380400 chr4A 90.411 73 7 0 38 110 727745436 727745364 2.780000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G380400 chr2B 544708849 544712235 3386 True 6255.00 6255 100.0000 1 3387 1 chr2B.!!$R3 3386
1 TraesCS2B01G380400 chr2B 543850487 543852086 1599 True 2342.00 2342 92.9400 735 2361 1 chr2B.!!$R2 1626
2 TraesCS2B01G380400 chr2B 544279423 544282211 2788 True 2164.00 2497 96.8605 735 3387 2 chr2B.!!$R4 2652
3 TraesCS2B01G380400 chr2D 461801651 461803672 2021 True 2645.00 2645 90.4160 333 2362 1 chr2D.!!$R2 2029
4 TraesCS2B01G380400 chr2D 461672940 461674193 1253 True 759.00 793 89.9320 735 2058 2 chr2D.!!$R3 1323
5 TraesCS2B01G380400 chr2A 606813315 606816534 3219 True 1227.00 2202 89.2685 332 2362 2 chr2A.!!$R3 2030
6 TraesCS2B01G380400 chr2A 606711255 606712965 1710 True 1122.50 1295 92.4375 700 2362 2 chr2A.!!$R2 1662
7 TraesCS2B01G380400 chr4B 622613821 622614468 647 True 203.85 353 88.0430 2577 3168 2 chr4B.!!$R2 591
8 TraesCS2B01G380400 chr3D 362019291 362019822 531 True 416.00 416 80.9010 2581 3134 1 chr3D.!!$R2 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
837 2079 0.037975 GAAGCCGTAAACTCGACCCA 60.038 55.0 0.0 0.0 0.0 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2799 4285 0.526211 GGGCTTCTTAACGGGCAAAG 59.474 55.0 0.0 0.0 0.0 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.050852 CTTAGCTGGGAAAATTGGATGC 57.949 45.455 0.00 0.00 0.00 3.91
22 23 1.941377 AGCTGGGAAAATTGGATGCA 58.059 45.000 0.00 0.00 0.00 3.96
23 24 2.259012 AGCTGGGAAAATTGGATGCAA 58.741 42.857 0.79 0.79 0.00 4.08
24 25 2.027837 AGCTGGGAAAATTGGATGCAAC 60.028 45.455 0.12 0.00 0.00 4.17
25 26 2.289569 GCTGGGAAAATTGGATGCAACA 60.290 45.455 0.12 0.00 0.00 3.33
26 27 3.806507 GCTGGGAAAATTGGATGCAACAA 60.807 43.478 0.12 9.27 0.00 2.83
27 28 4.387598 CTGGGAAAATTGGATGCAACAAA 58.612 39.130 0.12 0.00 0.00 2.83
28 29 4.387598 TGGGAAAATTGGATGCAACAAAG 58.612 39.130 0.12 0.00 0.00 2.77
29 30 4.141528 TGGGAAAATTGGATGCAACAAAGT 60.142 37.500 0.12 0.00 0.00 2.66
30 31 4.213906 GGGAAAATTGGATGCAACAAAGTG 59.786 41.667 0.12 0.00 0.00 3.16
31 32 4.815846 GGAAAATTGGATGCAACAAAGTGT 59.184 37.500 0.12 0.00 0.00 3.55
32 33 5.296531 GGAAAATTGGATGCAACAAAGTGTT 59.703 36.000 0.12 4.04 42.08 3.32
42 43 1.663695 ACAAAGTGTTGGTGGAGTCG 58.336 50.000 0.00 0.00 39.22 4.18
43 44 0.944386 CAAAGTGTTGGTGGAGTCGG 59.056 55.000 0.00 0.00 0.00 4.79
44 45 0.834612 AAAGTGTTGGTGGAGTCGGA 59.165 50.000 0.00 0.00 0.00 4.55
45 46 1.056660 AAGTGTTGGTGGAGTCGGAT 58.943 50.000 0.00 0.00 0.00 4.18
46 47 1.933021 AGTGTTGGTGGAGTCGGATA 58.067 50.000 0.00 0.00 0.00 2.59
47 48 2.253610 AGTGTTGGTGGAGTCGGATAA 58.746 47.619 0.00 0.00 0.00 1.75
48 49 2.838202 AGTGTTGGTGGAGTCGGATAAT 59.162 45.455 0.00 0.00 0.00 1.28
49 50 4.028131 AGTGTTGGTGGAGTCGGATAATA 58.972 43.478 0.00 0.00 0.00 0.98
50 51 4.099573 AGTGTTGGTGGAGTCGGATAATAG 59.900 45.833 0.00 0.00 0.00 1.73
51 52 3.181469 TGTTGGTGGAGTCGGATAATAGC 60.181 47.826 0.00 0.00 0.00 2.97
52 53 2.958818 TGGTGGAGTCGGATAATAGCT 58.041 47.619 0.00 0.00 0.00 3.32
53 54 3.305720 TGGTGGAGTCGGATAATAGCTT 58.694 45.455 0.00 0.00 0.00 3.74
54 55 3.709653 TGGTGGAGTCGGATAATAGCTTT 59.290 43.478 0.00 0.00 0.00 3.51
55 56 4.058817 GGTGGAGTCGGATAATAGCTTTG 58.941 47.826 0.00 0.00 0.00 2.77
56 57 4.443034 GGTGGAGTCGGATAATAGCTTTGT 60.443 45.833 0.00 0.00 0.00 2.83
57 58 4.508124 GTGGAGTCGGATAATAGCTTTGTG 59.492 45.833 0.00 0.00 0.00 3.33
58 59 4.058817 GGAGTCGGATAATAGCTTTGTGG 58.941 47.826 0.00 0.00 0.00 4.17
59 60 4.443034 GGAGTCGGATAATAGCTTTGTGGT 60.443 45.833 0.00 0.00 0.00 4.16
60 61 4.442706 AGTCGGATAATAGCTTTGTGGTG 58.557 43.478 0.00 0.00 0.00 4.17
61 62 3.560068 GTCGGATAATAGCTTTGTGGTGG 59.440 47.826 0.00 0.00 0.00 4.61
62 63 3.452990 TCGGATAATAGCTTTGTGGTGGA 59.547 43.478 0.00 0.00 0.00 4.02
63 64 4.080807 TCGGATAATAGCTTTGTGGTGGAA 60.081 41.667 0.00 0.00 0.00 3.53
64 65 4.035208 CGGATAATAGCTTTGTGGTGGAAC 59.965 45.833 0.00 0.00 0.00 3.62
65 66 5.193679 GGATAATAGCTTTGTGGTGGAACT 58.806 41.667 0.00 0.00 36.74 3.01
66 67 6.354130 GGATAATAGCTTTGTGGTGGAACTA 58.646 40.000 0.00 0.00 36.74 2.24
67 68 6.483640 GGATAATAGCTTTGTGGTGGAACTAG 59.516 42.308 0.00 0.00 36.74 2.57
68 69 4.910458 ATAGCTTTGTGGTGGAACTAGT 57.090 40.909 0.00 0.00 36.74 2.57
69 70 2.851195 AGCTTTGTGGTGGAACTAGTG 58.149 47.619 0.00 0.00 36.74 2.74
70 71 1.266989 GCTTTGTGGTGGAACTAGTGC 59.733 52.381 0.00 0.00 36.74 4.40
71 72 2.571212 CTTTGTGGTGGAACTAGTGCA 58.429 47.619 2.51 0.00 36.74 4.57
72 73 2.719531 TTGTGGTGGAACTAGTGCAA 57.280 45.000 2.51 0.00 36.74 4.08
73 74 2.719531 TGTGGTGGAACTAGTGCAAA 57.280 45.000 2.51 0.00 36.74 3.68
74 75 3.006112 TGTGGTGGAACTAGTGCAAAA 57.994 42.857 2.51 0.00 36.74 2.44
75 76 3.561143 TGTGGTGGAACTAGTGCAAAAT 58.439 40.909 2.51 0.00 36.74 1.82
76 77 3.568007 TGTGGTGGAACTAGTGCAAAATC 59.432 43.478 2.51 0.00 36.74 2.17
77 78 3.057526 GTGGTGGAACTAGTGCAAAATCC 60.058 47.826 2.51 2.54 36.74 3.01
78 79 3.153919 GGTGGAACTAGTGCAAAATCCA 58.846 45.455 7.50 7.50 36.74 3.41
79 80 3.191371 GGTGGAACTAGTGCAAAATCCAG 59.809 47.826 11.23 0.00 37.62 3.86
80 81 4.072131 GTGGAACTAGTGCAAAATCCAGA 58.928 43.478 11.23 0.00 37.62 3.86
81 82 4.702131 GTGGAACTAGTGCAAAATCCAGAT 59.298 41.667 11.23 0.00 37.62 2.90
82 83 4.701651 TGGAACTAGTGCAAAATCCAGATG 59.298 41.667 7.50 0.00 33.30 2.90
83 84 4.439289 GGAACTAGTGCAAAATCCAGATGC 60.439 45.833 2.51 0.00 40.45 3.91
84 85 3.689347 ACTAGTGCAAAATCCAGATGCA 58.311 40.909 0.00 0.00 46.97 3.96
90 91 4.939271 TGCAAAATCCAGATGCATATGTG 58.061 39.130 19.36 11.71 44.52 3.21
91 92 4.202172 TGCAAAATCCAGATGCATATGTGG 60.202 41.667 19.36 16.30 46.42 4.17
92 93 4.798263 GCAAAATCCAGATGCATATGTGGG 60.798 45.833 19.36 5.25 45.41 4.61
93 94 2.893215 ATCCAGATGCATATGTGGGG 57.107 50.000 19.36 4.89 45.41 4.96
94 95 0.111061 TCCAGATGCATATGTGGGGC 59.889 55.000 19.36 0.00 45.41 5.80
95 96 1.239296 CCAGATGCATATGTGGGGCG 61.239 60.000 19.36 0.00 42.51 6.13
96 97 0.535780 CAGATGCATATGTGGGGCGT 60.536 55.000 13.23 0.00 0.00 5.68
97 98 0.535780 AGATGCATATGTGGGGCGTG 60.536 55.000 0.00 0.00 0.00 5.34
98 99 0.534877 GATGCATATGTGGGGCGTGA 60.535 55.000 0.00 0.00 0.00 4.35
99 100 0.819259 ATGCATATGTGGGGCGTGAC 60.819 55.000 0.00 0.00 0.00 3.67
100 101 1.451207 GCATATGTGGGGCGTGACA 60.451 57.895 4.29 0.00 0.00 3.58
101 102 0.819259 GCATATGTGGGGCGTGACAT 60.819 55.000 4.29 0.00 36.72 3.06
102 103 1.679139 CATATGTGGGGCGTGACATT 58.321 50.000 0.00 0.00 34.60 2.71
103 104 1.334556 CATATGTGGGGCGTGACATTG 59.665 52.381 0.00 0.00 34.60 2.82
104 105 1.029408 TATGTGGGGCGTGACATTGC 61.029 55.000 0.00 0.00 34.60 3.56
105 106 2.672996 GTGGGGCGTGACATTGCT 60.673 61.111 3.12 0.00 0.00 3.91
106 107 1.376683 GTGGGGCGTGACATTGCTA 60.377 57.895 3.12 0.00 0.00 3.49
107 108 1.376683 TGGGGCGTGACATTGCTAC 60.377 57.895 3.12 0.00 0.00 3.58
108 109 1.078426 GGGGCGTGACATTGCTACT 60.078 57.895 3.12 0.00 0.00 2.57
109 110 1.369091 GGGGCGTGACATTGCTACTG 61.369 60.000 3.12 0.00 0.00 2.74
110 111 0.673644 GGGCGTGACATTGCTACTGT 60.674 55.000 3.12 0.00 0.00 3.55
111 112 1.404986 GGGCGTGACATTGCTACTGTA 60.405 52.381 3.12 0.00 0.00 2.74
112 113 1.659098 GGCGTGACATTGCTACTGTAC 59.341 52.381 3.12 0.00 0.00 2.90
113 114 2.607187 GCGTGACATTGCTACTGTACT 58.393 47.619 0.00 0.00 0.00 2.73
114 115 3.428452 GGCGTGACATTGCTACTGTACTA 60.428 47.826 0.00 0.00 0.00 1.82
115 116 3.791887 GCGTGACATTGCTACTGTACTAG 59.208 47.826 0.00 0.00 0.00 2.57
116 117 4.438336 GCGTGACATTGCTACTGTACTAGA 60.438 45.833 0.00 0.00 0.00 2.43
117 118 5.637809 CGTGACATTGCTACTGTACTAGAA 58.362 41.667 0.00 0.00 0.00 2.10
118 119 6.266323 CGTGACATTGCTACTGTACTAGAAT 58.734 40.000 0.00 0.00 0.00 2.40
119 120 6.197282 CGTGACATTGCTACTGTACTAGAATG 59.803 42.308 0.00 0.00 0.00 2.67
120 121 6.019479 GTGACATTGCTACTGTACTAGAATGC 60.019 42.308 0.00 0.00 0.00 3.56
121 122 5.977635 ACATTGCTACTGTACTAGAATGCA 58.022 37.500 0.00 0.00 0.00 3.96
122 123 6.406370 ACATTGCTACTGTACTAGAATGCAA 58.594 36.000 9.74 9.74 40.43 4.08
123 124 6.536582 ACATTGCTACTGTACTAGAATGCAAG 59.463 38.462 12.02 8.12 39.98 4.01
124 125 4.433615 TGCTACTGTACTAGAATGCAAGC 58.566 43.478 0.00 0.00 31.10 4.01
125 126 4.081697 TGCTACTGTACTAGAATGCAAGCA 60.082 41.667 0.00 0.00 34.14 3.91
126 127 4.870426 GCTACTGTACTAGAATGCAAGCAA 59.130 41.667 0.00 0.00 0.00 3.91
127 128 5.525378 GCTACTGTACTAGAATGCAAGCAAT 59.475 40.000 0.00 0.00 0.00 3.56
128 129 6.037610 GCTACTGTACTAGAATGCAAGCAATT 59.962 38.462 0.00 0.00 0.00 2.32
129 130 7.224753 GCTACTGTACTAGAATGCAAGCAATTA 59.775 37.037 0.00 0.00 0.00 1.40
130 131 9.265901 CTACTGTACTAGAATGCAAGCAATTAT 57.734 33.333 0.00 0.00 0.00 1.28
131 132 8.147642 ACTGTACTAGAATGCAAGCAATTATC 57.852 34.615 0.00 0.00 0.00 1.75
132 133 7.989741 ACTGTACTAGAATGCAAGCAATTATCT 59.010 33.333 0.00 3.87 0.00 1.98
133 134 8.737168 TGTACTAGAATGCAAGCAATTATCTT 57.263 30.769 0.00 0.00 0.00 2.40
134 135 9.177608 TGTACTAGAATGCAAGCAATTATCTTT 57.822 29.630 0.00 0.00 0.00 2.52
135 136 9.443283 GTACTAGAATGCAAGCAATTATCTTTG 57.557 33.333 0.00 1.70 0.00 2.77
136 137 7.486647 ACTAGAATGCAAGCAATTATCTTTGG 58.513 34.615 0.00 0.00 0.00 3.28
137 138 6.534475 AGAATGCAAGCAATTATCTTTGGA 57.466 33.333 0.00 0.00 0.00 3.53
138 139 6.335777 AGAATGCAAGCAATTATCTTTGGAC 58.664 36.000 0.00 0.00 0.00 4.02
139 140 5.927281 ATGCAAGCAATTATCTTTGGACT 57.073 34.783 0.00 0.00 0.00 3.85
140 141 5.726980 TGCAAGCAATTATCTTTGGACTT 57.273 34.783 0.00 0.00 0.00 3.01
141 142 6.100404 TGCAAGCAATTATCTTTGGACTTT 57.900 33.333 0.00 0.00 0.00 2.66
142 143 5.927689 TGCAAGCAATTATCTTTGGACTTTG 59.072 36.000 0.00 0.00 0.00 2.77
143 144 5.163923 GCAAGCAATTATCTTTGGACTTTGC 60.164 40.000 0.00 0.00 35.76 3.68
144 145 4.737054 AGCAATTATCTTTGGACTTTGCG 58.263 39.130 0.00 0.00 38.16 4.85
145 146 4.218417 AGCAATTATCTTTGGACTTTGCGT 59.782 37.500 0.00 0.00 38.16 5.24
146 147 4.558860 GCAATTATCTTTGGACTTTGCGTC 59.441 41.667 0.00 0.00 42.07 5.19
147 148 5.619981 GCAATTATCTTTGGACTTTGCGTCT 60.620 40.000 0.00 0.00 42.44 4.18
148 149 5.551760 ATTATCTTTGGACTTTGCGTCTG 57.448 39.130 0.00 0.00 42.44 3.51
149 150 2.325583 TCTTTGGACTTTGCGTCTGT 57.674 45.000 0.00 0.00 42.44 3.41
150 151 1.939934 TCTTTGGACTTTGCGTCTGTG 59.060 47.619 0.00 0.00 42.44 3.66
151 152 1.002468 CTTTGGACTTTGCGTCTGTGG 60.002 52.381 0.00 0.00 42.44 4.17
152 153 0.179234 TTGGACTTTGCGTCTGTGGA 59.821 50.000 0.00 0.00 42.44 4.02
153 154 0.249868 TGGACTTTGCGTCTGTGGAG 60.250 55.000 0.00 0.00 42.44 3.86
154 155 0.249911 GGACTTTGCGTCTGTGGAGT 60.250 55.000 0.00 0.00 42.44 3.85
155 156 1.000506 GGACTTTGCGTCTGTGGAGTA 59.999 52.381 0.00 0.00 42.44 2.59
156 157 2.353803 GGACTTTGCGTCTGTGGAGTAT 60.354 50.000 0.00 0.00 42.44 2.12
157 158 3.326747 GACTTTGCGTCTGTGGAGTATT 58.673 45.455 0.00 0.00 39.61 1.89
158 159 3.326747 ACTTTGCGTCTGTGGAGTATTC 58.673 45.455 0.00 0.00 0.00 1.75
159 160 3.006967 ACTTTGCGTCTGTGGAGTATTCT 59.993 43.478 0.00 0.00 0.00 2.40
160 161 2.941453 TGCGTCTGTGGAGTATTCTC 57.059 50.000 0.00 0.00 39.76 2.87
161 162 2.167662 TGCGTCTGTGGAGTATTCTCA 58.832 47.619 1.51 0.00 42.05 3.27
162 163 2.094700 TGCGTCTGTGGAGTATTCTCAC 60.095 50.000 1.51 0.00 42.05 3.51
163 164 2.164624 GCGTCTGTGGAGTATTCTCACT 59.835 50.000 1.51 0.00 42.05 3.41
164 165 3.763902 CGTCTGTGGAGTATTCTCACTG 58.236 50.000 1.51 7.46 42.05 3.66
165 166 3.516615 GTCTGTGGAGTATTCTCACTGC 58.483 50.000 1.51 0.00 42.05 4.40
166 167 2.497675 TCTGTGGAGTATTCTCACTGCC 59.502 50.000 1.51 0.00 42.05 4.85
167 168 2.499289 CTGTGGAGTATTCTCACTGCCT 59.501 50.000 1.51 0.00 42.05 4.75
168 169 3.701542 CTGTGGAGTATTCTCACTGCCTA 59.298 47.826 1.51 0.00 42.05 3.93
169 170 3.447586 TGTGGAGTATTCTCACTGCCTAC 59.552 47.826 1.51 0.00 42.05 3.18
170 171 2.688446 TGGAGTATTCTCACTGCCTACG 59.312 50.000 1.51 0.00 42.05 3.51
171 172 2.688958 GGAGTATTCTCACTGCCTACGT 59.311 50.000 1.51 0.00 42.05 3.57
172 173 3.489398 GGAGTATTCTCACTGCCTACGTG 60.489 52.174 0.00 0.00 42.05 4.49
173 174 3.353557 AGTATTCTCACTGCCTACGTGA 58.646 45.455 0.00 0.00 38.94 4.35
174 175 3.762288 AGTATTCTCACTGCCTACGTGAA 59.238 43.478 0.00 0.00 40.53 3.18
175 176 2.724977 TTCTCACTGCCTACGTGAAG 57.275 50.000 0.00 0.00 40.53 3.02
176 177 0.243907 TCTCACTGCCTACGTGAAGC 59.756 55.000 0.00 0.00 40.53 3.86
177 178 0.038251 CTCACTGCCTACGTGAAGCA 60.038 55.000 0.00 3.31 40.53 3.91
178 179 0.391228 TCACTGCCTACGTGAAGCAA 59.609 50.000 0.00 0.00 38.36 3.91
179 180 1.202592 TCACTGCCTACGTGAAGCAAA 60.203 47.619 0.00 0.00 38.36 3.68
180 181 1.806542 CACTGCCTACGTGAAGCAAAT 59.193 47.619 0.00 0.00 35.79 2.32
181 182 3.000041 CACTGCCTACGTGAAGCAAATA 59.000 45.455 0.00 0.00 35.79 1.40
182 183 3.623060 CACTGCCTACGTGAAGCAAATAT 59.377 43.478 0.00 0.00 35.79 1.28
183 184 3.623060 ACTGCCTACGTGAAGCAAATATG 59.377 43.478 0.00 0.00 35.79 1.78
184 185 2.942376 TGCCTACGTGAAGCAAATATGG 59.058 45.455 0.00 0.00 32.56 2.74
185 186 2.943033 GCCTACGTGAAGCAAATATGGT 59.057 45.455 0.00 0.00 39.43 3.55
186 187 3.242739 GCCTACGTGAAGCAAATATGGTG 60.243 47.826 0.00 0.00 37.35 4.17
187 188 3.312421 CCTACGTGAAGCAAATATGGTGG 59.688 47.826 0.00 0.00 37.35 4.61
188 189 1.472480 ACGTGAAGCAAATATGGTGGC 59.528 47.619 0.00 0.00 37.35 5.01
189 190 1.745087 CGTGAAGCAAATATGGTGGCT 59.255 47.619 0.00 0.00 37.35 4.75
190 191 2.223340 CGTGAAGCAAATATGGTGGCTC 60.223 50.000 0.00 0.00 37.35 4.70
191 192 2.754552 GTGAAGCAAATATGGTGGCTCA 59.245 45.455 0.00 0.00 37.35 4.26
192 193 3.382546 GTGAAGCAAATATGGTGGCTCAT 59.617 43.478 0.00 0.00 37.35 2.90
193 194 3.382227 TGAAGCAAATATGGTGGCTCATG 59.618 43.478 4.59 0.00 37.35 3.07
194 195 3.301794 AGCAAATATGGTGGCTCATGA 57.698 42.857 0.00 0.00 35.55 3.07
195 196 3.220110 AGCAAATATGGTGGCTCATGAG 58.780 45.455 18.84 18.84 35.55 2.90
196 197 2.954318 GCAAATATGGTGGCTCATGAGT 59.046 45.455 23.38 5.58 0.00 3.41
197 198 3.382546 GCAAATATGGTGGCTCATGAGTT 59.617 43.478 23.38 4.94 0.00 3.01
198 199 4.580167 GCAAATATGGTGGCTCATGAGTTA 59.420 41.667 23.38 10.42 0.00 2.24
199 200 5.278169 GCAAATATGGTGGCTCATGAGTTAG 60.278 44.000 23.38 0.00 0.00 2.34
200 201 2.338577 ATGGTGGCTCATGAGTTAGC 57.661 50.000 23.38 20.16 38.03 3.09
201 202 0.983467 TGGTGGCTCATGAGTTAGCA 59.017 50.000 23.38 22.18 40.61 3.49
202 203 1.339055 TGGTGGCTCATGAGTTAGCAC 60.339 52.381 23.38 10.52 40.61 4.40
203 204 1.339055 GGTGGCTCATGAGTTAGCACA 60.339 52.381 23.38 10.53 40.61 4.57
204 205 2.426522 GTGGCTCATGAGTTAGCACAA 58.573 47.619 23.38 0.00 40.61 3.33
205 206 3.012518 GTGGCTCATGAGTTAGCACAAT 58.987 45.455 23.38 0.00 40.61 2.71
206 207 3.011818 TGGCTCATGAGTTAGCACAATG 58.988 45.455 23.38 0.00 40.61 2.82
207 208 3.012518 GGCTCATGAGTTAGCACAATGT 58.987 45.455 23.38 0.00 40.61 2.71
208 209 3.441572 GGCTCATGAGTTAGCACAATGTT 59.558 43.478 23.38 0.00 40.61 2.71
209 210 4.437930 GGCTCATGAGTTAGCACAATGTTC 60.438 45.833 23.38 1.94 40.61 3.18
210 211 4.394300 GCTCATGAGTTAGCACAATGTTCT 59.606 41.667 23.38 0.00 38.63 3.01
211 212 5.106396 GCTCATGAGTTAGCACAATGTTCTT 60.106 40.000 23.38 0.00 38.63 2.52
212 213 6.569226 GCTCATGAGTTAGCACAATGTTCTTT 60.569 38.462 23.38 0.00 38.63 2.52
213 214 7.275888 TCATGAGTTAGCACAATGTTCTTTT 57.724 32.000 0.00 0.00 0.00 2.27
214 215 8.389779 TCATGAGTTAGCACAATGTTCTTTTA 57.610 30.769 0.00 0.00 0.00 1.52
215 216 8.506437 TCATGAGTTAGCACAATGTTCTTTTAG 58.494 33.333 0.00 0.00 0.00 1.85
216 217 8.506437 CATGAGTTAGCACAATGTTCTTTTAGA 58.494 33.333 0.00 0.00 0.00 2.10
217 218 8.087982 TGAGTTAGCACAATGTTCTTTTAGAG 57.912 34.615 0.00 0.00 0.00 2.43
218 219 7.931407 TGAGTTAGCACAATGTTCTTTTAGAGA 59.069 33.333 0.00 0.00 0.00 3.10
219 220 8.677148 AGTTAGCACAATGTTCTTTTAGAGAA 57.323 30.769 0.00 0.00 42.03 2.87
220 221 9.289782 AGTTAGCACAATGTTCTTTTAGAGAAT 57.710 29.630 0.00 0.00 45.66 2.40
245 246 9.927081 ATATTCTTCTATGTTTTGGGATTCTGT 57.073 29.630 0.00 0.00 0.00 3.41
246 247 7.687941 TTCTTCTATGTTTTGGGATTCTGTC 57.312 36.000 0.00 0.00 0.00 3.51
247 248 6.778821 TCTTCTATGTTTTGGGATTCTGTCA 58.221 36.000 0.00 0.00 0.00 3.58
248 249 7.405292 TCTTCTATGTTTTGGGATTCTGTCAT 58.595 34.615 0.00 0.00 0.00 3.06
249 250 7.554118 TCTTCTATGTTTTGGGATTCTGTCATC 59.446 37.037 0.00 0.00 0.00 2.92
250 251 6.122277 TCTATGTTTTGGGATTCTGTCATCC 58.878 40.000 0.00 0.00 42.09 3.51
267 268 6.670077 GTCATCCCTGACTTTATTTCTCAC 57.330 41.667 0.00 0.00 46.84 3.51
268 269 6.410540 GTCATCCCTGACTTTATTTCTCACT 58.589 40.000 0.00 0.00 46.84 3.41
269 270 6.536941 GTCATCCCTGACTTTATTTCTCACTC 59.463 42.308 0.00 0.00 46.84 3.51
270 271 6.441924 TCATCCCTGACTTTATTTCTCACTCT 59.558 38.462 0.00 0.00 0.00 3.24
271 272 6.688073 TCCCTGACTTTATTTCTCACTCTT 57.312 37.500 0.00 0.00 0.00 2.85
272 273 7.792364 TCCCTGACTTTATTTCTCACTCTTA 57.208 36.000 0.00 0.00 0.00 2.10
273 274 8.380742 TCCCTGACTTTATTTCTCACTCTTAT 57.619 34.615 0.00 0.00 0.00 1.73
274 275 8.260818 TCCCTGACTTTATTTCTCACTCTTATG 58.739 37.037 0.00 0.00 0.00 1.90
275 276 8.043710 CCCTGACTTTATTTCTCACTCTTATGT 58.956 37.037 0.00 0.00 0.00 2.29
285 286 8.912787 TTTCTCACTCTTATGTAAACGATCTC 57.087 34.615 0.00 0.00 0.00 2.75
286 287 6.716438 TCTCACTCTTATGTAAACGATCTCG 58.284 40.000 0.00 0.00 46.33 4.04
287 288 5.271625 TCACTCTTATGTAAACGATCTCGC 58.728 41.667 0.00 0.00 44.43 5.03
288 289 5.066117 TCACTCTTATGTAAACGATCTCGCT 59.934 40.000 0.00 0.00 44.43 4.93
289 290 6.259387 TCACTCTTATGTAAACGATCTCGCTA 59.741 38.462 0.00 0.00 44.43 4.26
290 291 7.041303 TCACTCTTATGTAAACGATCTCGCTAT 60.041 37.037 0.00 0.00 44.43 2.97
291 292 7.591795 CACTCTTATGTAAACGATCTCGCTATT 59.408 37.037 0.00 0.00 44.43 1.73
292 293 8.781196 ACTCTTATGTAAACGATCTCGCTATTA 58.219 33.333 0.00 0.00 44.43 0.98
293 294 9.776158 CTCTTATGTAAACGATCTCGCTATTAT 57.224 33.333 0.00 0.00 44.43 1.28
297 298 8.812147 ATGTAAACGATCTCGCTATTATTTGA 57.188 30.769 0.00 0.00 44.43 2.69
298 299 8.282124 TGTAAACGATCTCGCTATTATTTGAG 57.718 34.615 0.00 0.00 44.43 3.02
299 300 6.771188 AAACGATCTCGCTATTATTTGAGG 57.229 37.500 0.00 0.00 44.43 3.86
300 301 5.707242 ACGATCTCGCTATTATTTGAGGA 57.293 39.130 0.00 0.00 44.43 3.71
301 302 6.085555 ACGATCTCGCTATTATTTGAGGAA 57.914 37.500 0.00 0.00 44.43 3.36
302 303 6.692486 ACGATCTCGCTATTATTTGAGGAAT 58.308 36.000 0.00 0.00 44.43 3.01
303 304 7.827701 ACGATCTCGCTATTATTTGAGGAATA 58.172 34.615 0.00 0.00 44.43 1.75
304 305 8.304596 ACGATCTCGCTATTATTTGAGGAATAA 58.695 33.333 0.00 0.00 42.09 1.40
305 306 9.140286 CGATCTCGCTATTATTTGAGGAATAAA 57.860 33.333 0.00 0.00 42.01 1.40
308 309 9.477484 TCTCGCTATTATTTGAGGAATAAAGTC 57.523 33.333 0.00 0.00 42.01 3.01
309 310 9.261180 CTCGCTATTATTTGAGGAATAAAGTCA 57.739 33.333 0.00 0.00 42.01 3.41
310 311 9.607988 TCGCTATTATTTGAGGAATAAAGTCAA 57.392 29.630 0.00 0.00 42.01 3.18
388 389 7.464358 ACGTTAGATAGTCAACAAAATCATGC 58.536 34.615 0.00 0.00 0.00 4.06
453 462 3.674410 CGTCTAATCAGCACTCAAGCAGA 60.674 47.826 0.00 0.00 36.85 4.26
459 468 2.874701 TCAGCACTCAAGCAGAACTTTC 59.125 45.455 0.00 0.00 36.04 2.62
465 474 3.065925 ACTCAAGCAGAACTTTCAACAGC 59.934 43.478 0.00 0.00 36.04 4.40
521 531 0.591236 CAACCACAGCCGTGAAAACG 60.591 55.000 0.37 0.00 46.80 3.60
527 537 2.353030 GCCGTGAAAACGTGCCAC 60.353 61.111 0.00 0.00 0.00 5.01
562 595 9.326413 CCTACTTCTTTCTCTTGTGAAAAGTTA 57.674 33.333 7.40 0.00 35.79 2.24
692 744 0.041090 ATCCTCGGCCCAACCAAAAT 59.959 50.000 0.00 0.00 39.03 1.82
706 758 1.727880 CCAAAATCATGTTTGCCGCAG 59.272 47.619 3.79 0.00 37.20 5.18
708 760 2.068837 AAATCATGTTTGCCGCAGTG 57.931 45.000 0.00 0.00 0.00 3.66
709 1940 0.388907 AATCATGTTTGCCGCAGTGC 60.389 50.000 4.58 4.58 0.00 4.40
754 1989 0.512952 ACGCGCTGAACAATTCTCAC 59.487 50.000 5.73 0.00 0.00 3.51
764 2005 5.614308 TGAACAATTCTCACATCACACTCT 58.386 37.500 0.00 0.00 0.00 3.24
775 2016 4.630505 CACATCACACTCTCATCTTCTTGG 59.369 45.833 0.00 0.00 0.00 3.61
837 2079 0.037975 GAAGCCGTAAACTCGACCCA 60.038 55.000 0.00 0.00 0.00 4.51
838 2080 0.320160 AAGCCGTAAACTCGACCCAC 60.320 55.000 0.00 0.00 0.00 4.61
839 2081 1.739196 GCCGTAAACTCGACCCACC 60.739 63.158 0.00 0.00 0.00 4.61
840 2082 1.667151 CCGTAAACTCGACCCACCA 59.333 57.895 0.00 0.00 0.00 4.17
841 2083 0.668401 CCGTAAACTCGACCCACCAC 60.668 60.000 0.00 0.00 0.00 4.16
842 2084 0.668401 CGTAAACTCGACCCACCACC 60.668 60.000 0.00 0.00 0.00 4.61
867 2109 7.038017 CCACCACTCCTATATATCTGGATGTTT 60.038 40.741 7.56 0.00 0.00 2.83
869 2111 6.820656 CCACTCCTATATATCTGGATGTTTGC 59.179 42.308 7.56 0.00 0.00 3.68
881 2123 3.684305 TGGATGTTTGCACGTTCATAGAG 59.316 43.478 0.00 0.00 0.00 2.43
882 2124 3.932710 GGATGTTTGCACGTTCATAGAGA 59.067 43.478 0.00 0.00 0.00 3.10
936 2185 0.948623 GCCATTTTCCAACGGCCAAC 60.949 55.000 2.24 0.00 38.67 3.77
955 2204 2.417719 ACACTAACTAAGCAGCAGCAC 58.582 47.619 3.17 0.00 45.49 4.40
1157 2413 0.263765 ATCTACTTCTACCGGGGCCA 59.736 55.000 6.32 0.00 0.00 5.36
1200 2456 1.144057 GGCCAGGGTCATACGTCAG 59.856 63.158 0.00 0.00 0.00 3.51
2475 3950 3.091022 GGTGCGCGCTGAAAAACG 61.091 61.111 33.29 0.00 0.00 3.60
2483 3958 0.442699 CGCTGAAAAACGCTACTCCC 59.557 55.000 0.00 0.00 0.00 4.30
2522 3997 3.821033 GGGCCTAATGCGTATTTCAAGAT 59.179 43.478 3.47 0.00 42.61 2.40
3236 4810 2.542618 CGATCAAGATCAGGGACTCACG 60.543 54.545 10.39 0.00 34.60 4.35
3237 4811 1.186200 TCAAGATCAGGGACTCACGG 58.814 55.000 0.00 0.00 34.60 4.94
3244 4818 1.550524 TCAGGGACTCACGGAAAGATG 59.449 52.381 0.00 0.00 34.60 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.448301 TGCATCCAATTTTCCCAGCTAAG 59.552 43.478 0.00 0.00 0.00 2.18
2 3 3.098774 TGCATCCAATTTTCCCAGCTA 57.901 42.857 0.00 0.00 0.00 3.32
4 5 2.289569 TGTTGCATCCAATTTTCCCAGC 60.290 45.455 0.00 0.00 32.75 4.85
5 6 3.681593 TGTTGCATCCAATTTTCCCAG 57.318 42.857 0.00 0.00 32.75 4.45
6 7 4.141528 ACTTTGTTGCATCCAATTTTCCCA 60.142 37.500 0.00 0.00 32.75 4.37
7 8 4.213906 CACTTTGTTGCATCCAATTTTCCC 59.786 41.667 0.00 0.00 32.75 3.97
8 9 4.815846 ACACTTTGTTGCATCCAATTTTCC 59.184 37.500 0.00 0.00 32.75 3.13
9 10 5.989551 ACACTTTGTTGCATCCAATTTTC 57.010 34.783 0.00 0.00 32.75 2.29
22 23 2.014128 CGACTCCACCAACACTTTGTT 58.986 47.619 0.00 0.00 42.08 2.83
23 24 1.663695 CGACTCCACCAACACTTTGT 58.336 50.000 0.00 0.00 0.00 2.83
24 25 0.944386 CCGACTCCACCAACACTTTG 59.056 55.000 0.00 0.00 0.00 2.77
25 26 0.834612 TCCGACTCCACCAACACTTT 59.165 50.000 0.00 0.00 0.00 2.66
26 27 1.056660 ATCCGACTCCACCAACACTT 58.943 50.000 0.00 0.00 0.00 3.16
27 28 1.933021 TATCCGACTCCACCAACACT 58.067 50.000 0.00 0.00 0.00 3.55
28 29 2.754946 TTATCCGACTCCACCAACAC 57.245 50.000 0.00 0.00 0.00 3.32
29 30 3.181469 GCTATTATCCGACTCCACCAACA 60.181 47.826 0.00 0.00 0.00 3.33
30 31 3.069729 AGCTATTATCCGACTCCACCAAC 59.930 47.826 0.00 0.00 0.00 3.77
31 32 3.305720 AGCTATTATCCGACTCCACCAA 58.694 45.455 0.00 0.00 0.00 3.67
32 33 2.958818 AGCTATTATCCGACTCCACCA 58.041 47.619 0.00 0.00 0.00 4.17
33 34 4.058817 CAAAGCTATTATCCGACTCCACC 58.941 47.826 0.00 0.00 0.00 4.61
34 35 4.508124 CACAAAGCTATTATCCGACTCCAC 59.492 45.833 0.00 0.00 0.00 4.02
35 36 4.442893 CCACAAAGCTATTATCCGACTCCA 60.443 45.833 0.00 0.00 0.00 3.86
36 37 4.058817 CCACAAAGCTATTATCCGACTCC 58.941 47.826 0.00 0.00 0.00 3.85
37 38 4.508124 CACCACAAAGCTATTATCCGACTC 59.492 45.833 0.00 0.00 0.00 3.36
38 39 4.442706 CACCACAAAGCTATTATCCGACT 58.557 43.478 0.00 0.00 0.00 4.18
39 40 3.560068 CCACCACAAAGCTATTATCCGAC 59.440 47.826 0.00 0.00 0.00 4.79
40 41 3.452990 TCCACCACAAAGCTATTATCCGA 59.547 43.478 0.00 0.00 0.00 4.55
41 42 3.804036 TCCACCACAAAGCTATTATCCG 58.196 45.455 0.00 0.00 0.00 4.18
42 43 5.193679 AGTTCCACCACAAAGCTATTATCC 58.806 41.667 0.00 0.00 0.00 2.59
43 44 7.011482 CACTAGTTCCACCACAAAGCTATTATC 59.989 40.741 0.00 0.00 0.00 1.75
44 45 6.823689 CACTAGTTCCACCACAAAGCTATTAT 59.176 38.462 0.00 0.00 0.00 1.28
45 46 6.170506 CACTAGTTCCACCACAAAGCTATTA 58.829 40.000 0.00 0.00 0.00 0.98
46 47 5.003804 CACTAGTTCCACCACAAAGCTATT 58.996 41.667 0.00 0.00 0.00 1.73
47 48 4.579869 CACTAGTTCCACCACAAAGCTAT 58.420 43.478 0.00 0.00 0.00 2.97
48 49 3.805807 GCACTAGTTCCACCACAAAGCTA 60.806 47.826 0.00 0.00 0.00 3.32
49 50 2.851195 CACTAGTTCCACCACAAAGCT 58.149 47.619 0.00 0.00 0.00 3.74
50 51 1.266989 GCACTAGTTCCACCACAAAGC 59.733 52.381 0.00 0.00 0.00 3.51
51 52 2.571212 TGCACTAGTTCCACCACAAAG 58.429 47.619 0.00 0.00 0.00 2.77
52 53 2.719531 TGCACTAGTTCCACCACAAA 57.280 45.000 0.00 0.00 0.00 2.83
53 54 2.719531 TTGCACTAGTTCCACCACAA 57.280 45.000 0.00 0.00 0.00 3.33
54 55 2.719531 TTTGCACTAGTTCCACCACA 57.280 45.000 0.00 0.00 0.00 4.17
55 56 3.057526 GGATTTTGCACTAGTTCCACCAC 60.058 47.826 4.46 0.00 0.00 4.16
56 57 3.153919 GGATTTTGCACTAGTTCCACCA 58.846 45.455 4.46 0.00 0.00 4.17
57 58 3.153919 TGGATTTTGCACTAGTTCCACC 58.846 45.455 7.50 0.70 0.00 4.61
58 59 4.072131 TCTGGATTTTGCACTAGTTCCAC 58.928 43.478 7.50 0.00 0.00 4.02
59 60 4.365514 TCTGGATTTTGCACTAGTTCCA 57.634 40.909 10.56 10.56 0.00 3.53
60 61 4.439289 GCATCTGGATTTTGCACTAGTTCC 60.439 45.833 0.00 0.00 36.40 3.62
61 62 4.156556 TGCATCTGGATTTTGCACTAGTTC 59.843 41.667 0.00 0.00 41.18 3.01
62 63 4.081406 TGCATCTGGATTTTGCACTAGTT 58.919 39.130 0.00 0.00 41.18 2.24
63 64 3.689347 TGCATCTGGATTTTGCACTAGT 58.311 40.909 0.00 0.00 41.18 2.57
69 70 4.304110 CCACATATGCATCTGGATTTTGC 58.696 43.478 15.67 0.00 36.91 3.68
70 71 4.262292 CCCCACATATGCATCTGGATTTTG 60.262 45.833 15.67 5.13 0.00 2.44
71 72 3.899360 CCCCACATATGCATCTGGATTTT 59.101 43.478 15.67 0.00 0.00 1.82
72 73 3.503365 CCCCACATATGCATCTGGATTT 58.497 45.455 15.67 0.00 0.00 2.17
73 74 2.820485 GCCCCACATATGCATCTGGATT 60.820 50.000 15.67 0.00 0.00 3.01
74 75 1.272313 GCCCCACATATGCATCTGGAT 60.272 52.381 15.67 0.00 0.00 3.41
75 76 0.111061 GCCCCACATATGCATCTGGA 59.889 55.000 15.67 0.00 0.00 3.86
76 77 1.239296 CGCCCCACATATGCATCTGG 61.239 60.000 15.67 12.61 0.00 3.86
77 78 0.535780 ACGCCCCACATATGCATCTG 60.536 55.000 0.19 6.48 0.00 2.90
78 79 0.535780 CACGCCCCACATATGCATCT 60.536 55.000 0.19 0.00 0.00 2.90
79 80 0.534877 TCACGCCCCACATATGCATC 60.535 55.000 0.19 0.00 0.00 3.91
80 81 0.819259 GTCACGCCCCACATATGCAT 60.819 55.000 3.79 3.79 0.00 3.96
81 82 1.451207 GTCACGCCCCACATATGCA 60.451 57.895 1.58 0.00 0.00 3.96
82 83 0.819259 ATGTCACGCCCCACATATGC 60.819 55.000 1.58 0.00 31.20 3.14
83 84 1.334556 CAATGTCACGCCCCACATATG 59.665 52.381 0.00 0.00 32.74 1.78
84 85 1.679139 CAATGTCACGCCCCACATAT 58.321 50.000 0.00 0.00 32.74 1.78
85 86 1.029408 GCAATGTCACGCCCCACATA 61.029 55.000 0.00 0.00 32.74 2.29
86 87 2.342650 GCAATGTCACGCCCCACAT 61.343 57.895 0.00 0.00 34.58 3.21
87 88 2.118233 TAGCAATGTCACGCCCCACA 62.118 55.000 0.00 0.00 0.00 4.17
88 89 1.376683 TAGCAATGTCACGCCCCAC 60.377 57.895 0.00 0.00 0.00 4.61
89 90 1.376683 GTAGCAATGTCACGCCCCA 60.377 57.895 0.00 0.00 0.00 4.96
90 91 1.078426 AGTAGCAATGTCACGCCCC 60.078 57.895 0.00 0.00 0.00 5.80
91 92 0.673644 ACAGTAGCAATGTCACGCCC 60.674 55.000 0.00 0.00 0.00 6.13
92 93 1.659098 GTACAGTAGCAATGTCACGCC 59.341 52.381 0.00 0.00 32.02 5.68
93 94 2.607187 AGTACAGTAGCAATGTCACGC 58.393 47.619 0.00 0.00 32.02 5.34
94 95 5.231265 TCTAGTACAGTAGCAATGTCACG 57.769 43.478 0.00 0.00 32.02 4.35
95 96 6.019479 GCATTCTAGTACAGTAGCAATGTCAC 60.019 42.308 0.00 0.00 32.02 3.67
96 97 6.042777 GCATTCTAGTACAGTAGCAATGTCA 58.957 40.000 0.00 0.00 32.02 3.58
97 98 6.042777 TGCATTCTAGTACAGTAGCAATGTC 58.957 40.000 0.00 1.10 32.02 3.06
98 99 5.977635 TGCATTCTAGTACAGTAGCAATGT 58.022 37.500 0.00 0.00 34.62 2.71
99 100 6.510799 GCTTGCATTCTAGTACAGTAGCAATG 60.511 42.308 9.69 8.96 36.52 2.82
100 101 5.525378 GCTTGCATTCTAGTACAGTAGCAAT 59.475 40.000 9.69 0.00 36.52 3.56
101 102 4.870426 GCTTGCATTCTAGTACAGTAGCAA 59.130 41.667 0.00 0.00 36.10 3.91
102 103 4.081697 TGCTTGCATTCTAGTACAGTAGCA 60.082 41.667 0.00 0.00 33.03 3.49
103 104 4.433615 TGCTTGCATTCTAGTACAGTAGC 58.566 43.478 0.00 0.00 0.00 3.58
104 105 7.545362 AATTGCTTGCATTCTAGTACAGTAG 57.455 36.000 0.00 0.00 0.00 2.57
105 106 9.261180 GATAATTGCTTGCATTCTAGTACAGTA 57.739 33.333 0.00 0.00 0.00 2.74
106 107 7.989741 AGATAATTGCTTGCATTCTAGTACAGT 59.010 33.333 0.00 0.00 0.00 3.55
107 108 8.375608 AGATAATTGCTTGCATTCTAGTACAG 57.624 34.615 0.00 0.00 0.00 2.74
108 109 8.737168 AAGATAATTGCTTGCATTCTAGTACA 57.263 30.769 0.00 0.00 0.00 2.90
109 110 9.443283 CAAAGATAATTGCTTGCATTCTAGTAC 57.557 33.333 0.00 0.00 0.00 2.73
110 111 8.623903 CCAAAGATAATTGCTTGCATTCTAGTA 58.376 33.333 0.00 0.00 0.00 1.82
111 112 7.340232 TCCAAAGATAATTGCTTGCATTCTAGT 59.660 33.333 0.00 0.00 0.00 2.57
112 113 7.646922 GTCCAAAGATAATTGCTTGCATTCTAG 59.353 37.037 0.00 0.00 0.00 2.43
113 114 7.340232 AGTCCAAAGATAATTGCTTGCATTCTA 59.660 33.333 0.00 0.00 0.00 2.10
114 115 6.154021 AGTCCAAAGATAATTGCTTGCATTCT 59.846 34.615 0.00 0.00 0.00 2.40
115 116 6.335777 AGTCCAAAGATAATTGCTTGCATTC 58.664 36.000 0.00 0.00 0.00 2.67
116 117 6.290294 AGTCCAAAGATAATTGCTTGCATT 57.710 33.333 0.00 0.00 0.00 3.56
117 118 5.927281 AGTCCAAAGATAATTGCTTGCAT 57.073 34.783 0.00 0.00 0.00 3.96
118 119 5.726980 AAGTCCAAAGATAATTGCTTGCA 57.273 34.783 0.00 0.00 0.00 4.08
119 120 5.163923 GCAAAGTCCAAAGATAATTGCTTGC 60.164 40.000 0.00 0.00 36.02 4.01
120 121 5.061311 CGCAAAGTCCAAAGATAATTGCTTG 59.939 40.000 0.00 0.00 36.41 4.01
121 122 5.163513 CGCAAAGTCCAAAGATAATTGCTT 58.836 37.500 0.00 0.00 36.41 3.91
122 123 4.218417 ACGCAAAGTCCAAAGATAATTGCT 59.782 37.500 0.00 0.00 36.41 3.91
123 124 4.485163 ACGCAAAGTCCAAAGATAATTGC 58.515 39.130 0.00 0.00 35.79 3.56
136 137 6.632309 GAGAATACTCCACAGACGCAAAGTC 61.632 48.000 0.00 0.00 42.14 3.01
137 138 3.006967 AGAATACTCCACAGACGCAAAGT 59.993 43.478 0.00 0.00 0.00 2.66
138 139 3.589988 AGAATACTCCACAGACGCAAAG 58.410 45.455 0.00 0.00 0.00 2.77
139 140 3.006430 TGAGAATACTCCACAGACGCAAA 59.994 43.478 0.00 0.00 41.99 3.68
140 141 2.560981 TGAGAATACTCCACAGACGCAA 59.439 45.455 0.00 0.00 41.99 4.85
141 142 2.094700 GTGAGAATACTCCACAGACGCA 60.095 50.000 0.00 0.00 41.99 5.24
142 143 2.164624 AGTGAGAATACTCCACAGACGC 59.835 50.000 0.00 0.00 41.99 5.19
143 144 3.763902 CAGTGAGAATACTCCACAGACG 58.236 50.000 0.00 0.00 41.99 4.18
144 145 3.516615 GCAGTGAGAATACTCCACAGAC 58.483 50.000 0.00 0.00 41.99 3.51
145 146 2.497675 GGCAGTGAGAATACTCCACAGA 59.502 50.000 0.00 0.00 41.99 3.41
146 147 2.499289 AGGCAGTGAGAATACTCCACAG 59.501 50.000 0.00 0.00 41.99 3.66
147 148 2.540383 AGGCAGTGAGAATACTCCACA 58.460 47.619 0.00 0.00 41.99 4.17
148 149 3.489398 CGTAGGCAGTGAGAATACTCCAC 60.489 52.174 0.00 0.00 41.99 4.02
149 150 2.688446 CGTAGGCAGTGAGAATACTCCA 59.312 50.000 0.00 0.00 41.99 3.86
150 151 2.688958 ACGTAGGCAGTGAGAATACTCC 59.311 50.000 0.00 0.00 41.99 3.85
151 152 3.377485 TCACGTAGGCAGTGAGAATACTC 59.623 47.826 0.00 0.00 42.91 2.59
152 153 3.353557 TCACGTAGGCAGTGAGAATACT 58.646 45.455 0.00 0.00 42.91 2.12
153 154 3.777465 TCACGTAGGCAGTGAGAATAC 57.223 47.619 0.00 0.00 42.91 1.89
159 160 0.391228 TTGCTTCACGTAGGCAGTGA 59.609 50.000 0.00 6.41 45.68 3.41
160 161 1.225855 TTTGCTTCACGTAGGCAGTG 58.774 50.000 8.75 2.08 40.71 3.66
161 162 2.185004 ATTTGCTTCACGTAGGCAGT 57.815 45.000 8.75 1.78 37.28 4.40
162 163 3.002656 CCATATTTGCTTCACGTAGGCAG 59.997 47.826 8.75 0.00 37.28 4.85
163 164 2.942376 CCATATTTGCTTCACGTAGGCA 59.058 45.455 5.38 5.38 0.00 4.75
164 165 2.943033 ACCATATTTGCTTCACGTAGGC 59.057 45.455 0.00 0.00 0.00 3.93
165 166 3.312421 CCACCATATTTGCTTCACGTAGG 59.688 47.826 0.00 0.00 0.00 3.18
166 167 3.242739 GCCACCATATTTGCTTCACGTAG 60.243 47.826 0.00 0.00 0.00 3.51
167 168 2.680841 GCCACCATATTTGCTTCACGTA 59.319 45.455 0.00 0.00 0.00 3.57
168 169 1.472480 GCCACCATATTTGCTTCACGT 59.528 47.619 0.00 0.00 0.00 4.49
169 170 1.745087 AGCCACCATATTTGCTTCACG 59.255 47.619 0.00 0.00 0.00 4.35
170 171 2.754552 TGAGCCACCATATTTGCTTCAC 59.245 45.455 0.00 0.00 33.41 3.18
171 172 3.084536 TGAGCCACCATATTTGCTTCA 57.915 42.857 0.00 0.00 33.41 3.02
172 173 3.633525 TCATGAGCCACCATATTTGCTTC 59.366 43.478 0.00 0.00 33.41 3.86
173 174 3.634504 TCATGAGCCACCATATTTGCTT 58.365 40.909 0.00 0.00 33.41 3.91
174 175 3.220110 CTCATGAGCCACCATATTTGCT 58.780 45.455 10.38 0.00 36.62 3.91
175 176 2.954318 ACTCATGAGCCACCATATTTGC 59.046 45.455 22.83 0.00 0.00 3.68
176 177 5.278169 GCTAACTCATGAGCCACCATATTTG 60.278 44.000 22.83 8.71 32.25 2.32
177 178 4.823989 GCTAACTCATGAGCCACCATATTT 59.176 41.667 22.83 8.47 32.25 1.40
178 179 4.141413 TGCTAACTCATGAGCCACCATATT 60.141 41.667 22.83 9.16 37.94 1.28
179 180 3.392285 TGCTAACTCATGAGCCACCATAT 59.608 43.478 22.83 0.00 37.94 1.78
180 181 2.771372 TGCTAACTCATGAGCCACCATA 59.229 45.455 22.83 5.84 37.94 2.74
181 182 1.561076 TGCTAACTCATGAGCCACCAT 59.439 47.619 22.83 0.00 37.94 3.55
182 183 0.983467 TGCTAACTCATGAGCCACCA 59.017 50.000 22.83 11.95 37.94 4.17
183 184 1.339055 TGTGCTAACTCATGAGCCACC 60.339 52.381 22.83 9.52 37.94 4.61
184 185 2.099141 TGTGCTAACTCATGAGCCAC 57.901 50.000 22.83 21.39 37.94 5.01
185 186 2.857186 TTGTGCTAACTCATGAGCCA 57.143 45.000 22.83 11.61 37.94 4.75
186 187 3.012518 ACATTGTGCTAACTCATGAGCC 58.987 45.455 22.83 9.18 37.94 4.70
187 188 4.394300 AGAACATTGTGCTAACTCATGAGC 59.606 41.667 22.83 10.16 39.25 4.26
188 189 6.492007 AAGAACATTGTGCTAACTCATGAG 57.508 37.500 21.37 21.37 0.00 2.90
189 190 6.882610 AAAGAACATTGTGCTAACTCATGA 57.117 33.333 0.00 0.00 0.00 3.07
190 191 8.506437 TCTAAAAGAACATTGTGCTAACTCATG 58.494 33.333 0.00 0.00 0.00 3.07
191 192 8.621532 TCTAAAAGAACATTGTGCTAACTCAT 57.378 30.769 0.00 0.00 0.00 2.90
192 193 7.931407 TCTCTAAAAGAACATTGTGCTAACTCA 59.069 33.333 0.00 0.00 0.00 3.41
193 194 8.311650 TCTCTAAAAGAACATTGTGCTAACTC 57.688 34.615 0.00 0.00 0.00 3.01
194 195 8.677148 TTCTCTAAAAGAACATTGTGCTAACT 57.323 30.769 0.00 0.00 39.12 2.24
219 220 9.927081 ACAGAATCCCAAAACATAGAAGAATAT 57.073 29.630 0.00 0.00 0.00 1.28
220 221 9.396022 GACAGAATCCCAAAACATAGAAGAATA 57.604 33.333 0.00 0.00 0.00 1.75
221 222 7.890127 TGACAGAATCCCAAAACATAGAAGAAT 59.110 33.333 0.00 0.00 0.00 2.40
222 223 7.230747 TGACAGAATCCCAAAACATAGAAGAA 58.769 34.615 0.00 0.00 0.00 2.52
223 224 6.778821 TGACAGAATCCCAAAACATAGAAGA 58.221 36.000 0.00 0.00 0.00 2.87
224 225 7.201767 GGATGACAGAATCCCAAAACATAGAAG 60.202 40.741 0.00 0.00 40.36 2.85
225 226 6.603201 GGATGACAGAATCCCAAAACATAGAA 59.397 38.462 0.00 0.00 40.36 2.10
226 227 6.122277 GGATGACAGAATCCCAAAACATAGA 58.878 40.000 0.00 0.00 40.36 1.98
227 228 6.382869 GGATGACAGAATCCCAAAACATAG 57.617 41.667 0.00 0.00 40.36 2.23
237 238 3.922171 AAGTCAGGGATGACAGAATCC 57.078 47.619 10.72 0.00 44.76 3.01
238 239 7.772757 AGAAATAAAGTCAGGGATGACAGAATC 59.227 37.037 10.72 2.25 41.02 2.52
239 240 7.637511 AGAAATAAAGTCAGGGATGACAGAAT 58.362 34.615 10.72 0.00 41.02 2.40
240 241 7.020827 AGAAATAAAGTCAGGGATGACAGAA 57.979 36.000 10.72 0.00 41.02 3.02
241 242 6.213397 TGAGAAATAAAGTCAGGGATGACAGA 59.787 38.462 10.72 0.00 41.02 3.41
242 243 6.314896 GTGAGAAATAAAGTCAGGGATGACAG 59.685 42.308 10.72 0.00 41.02 3.51
243 244 6.013379 AGTGAGAAATAAAGTCAGGGATGACA 60.013 38.462 10.72 0.00 41.02 3.58
244 245 6.410540 AGTGAGAAATAAAGTCAGGGATGAC 58.589 40.000 0.06 0.06 39.00 3.06
245 246 6.441924 AGAGTGAGAAATAAAGTCAGGGATGA 59.558 38.462 0.00 0.00 0.00 2.92
246 247 6.648192 AGAGTGAGAAATAAAGTCAGGGATG 58.352 40.000 0.00 0.00 0.00 3.51
247 248 6.882768 AGAGTGAGAAATAAAGTCAGGGAT 57.117 37.500 0.00 0.00 0.00 3.85
248 249 6.688073 AAGAGTGAGAAATAAAGTCAGGGA 57.312 37.500 0.00 0.00 0.00 4.20
249 250 8.043710 ACATAAGAGTGAGAAATAAAGTCAGGG 58.956 37.037 0.00 0.00 0.00 4.45
259 260 9.522804 GAGATCGTTTACATAAGAGTGAGAAAT 57.477 33.333 0.00 0.00 0.00 2.17
260 261 7.696872 CGAGATCGTTTACATAAGAGTGAGAAA 59.303 37.037 0.00 0.00 34.11 2.52
261 262 7.187480 CGAGATCGTTTACATAAGAGTGAGAA 58.813 38.462 0.00 0.00 34.11 2.87
262 263 6.716438 CGAGATCGTTTACATAAGAGTGAGA 58.284 40.000 0.00 0.00 34.11 3.27
263 264 5.396947 GCGAGATCGTTTACATAAGAGTGAG 59.603 44.000 3.94 0.00 42.22 3.51
264 265 5.066117 AGCGAGATCGTTTACATAAGAGTGA 59.934 40.000 3.94 0.00 42.22 3.41
265 266 5.274718 AGCGAGATCGTTTACATAAGAGTG 58.725 41.667 3.94 0.00 42.22 3.51
266 267 5.502153 AGCGAGATCGTTTACATAAGAGT 57.498 39.130 3.94 0.00 42.22 3.24
267 268 9.776158 ATAATAGCGAGATCGTTTACATAAGAG 57.224 33.333 3.94 0.00 42.22 2.85
271 272 9.902196 TCAAATAATAGCGAGATCGTTTACATA 57.098 29.630 3.94 0.00 42.22 2.29
272 273 8.812147 TCAAATAATAGCGAGATCGTTTACAT 57.188 30.769 3.94 0.00 42.22 2.29
273 274 7.381408 CCTCAAATAATAGCGAGATCGTTTACA 59.619 37.037 3.94 0.00 42.22 2.41
274 275 7.594015 TCCTCAAATAATAGCGAGATCGTTTAC 59.406 37.037 3.94 0.00 42.22 2.01
275 276 7.654568 TCCTCAAATAATAGCGAGATCGTTTA 58.345 34.615 3.94 1.39 42.22 2.01
276 277 6.513180 TCCTCAAATAATAGCGAGATCGTTT 58.487 36.000 3.94 0.00 42.22 3.60
277 278 6.085555 TCCTCAAATAATAGCGAGATCGTT 57.914 37.500 3.94 0.00 42.22 3.85
278 279 5.707242 TCCTCAAATAATAGCGAGATCGT 57.293 39.130 3.94 0.00 42.22 3.73
279 280 8.689251 TTATTCCTCAAATAATAGCGAGATCG 57.311 34.615 0.00 0.00 35.38 3.69
282 283 9.477484 GACTTTATTCCTCAAATAATAGCGAGA 57.523 33.333 0.00 0.00 39.11 4.04
283 284 9.261180 TGACTTTATTCCTCAAATAATAGCGAG 57.739 33.333 0.00 0.00 39.11 5.03
284 285 9.607988 TTGACTTTATTCCTCAAATAATAGCGA 57.392 29.630 0.00 0.00 39.11 4.93
324 325 7.595819 TGGTGAGGAACTTGAATATGTTTTT 57.404 32.000 0.00 0.00 41.55 1.94
325 326 7.233348 ACATGGTGAGGAACTTGAATATGTTTT 59.767 33.333 0.00 0.00 41.55 2.43
326 327 6.721208 ACATGGTGAGGAACTTGAATATGTTT 59.279 34.615 0.00 0.00 41.55 2.83
327 328 6.248433 ACATGGTGAGGAACTTGAATATGTT 58.752 36.000 0.00 0.00 41.55 2.71
328 329 5.819991 ACATGGTGAGGAACTTGAATATGT 58.180 37.500 0.00 0.00 41.55 2.29
329 330 5.882000 TGACATGGTGAGGAACTTGAATATG 59.118 40.000 0.00 0.00 41.55 1.78
330 331 6.065976 TGACATGGTGAGGAACTTGAATAT 57.934 37.500 0.00 0.00 41.55 1.28
368 369 7.692460 TTCTGCATGATTTTGTTGACTATCT 57.308 32.000 0.00 0.00 0.00 1.98
369 370 8.922058 ATTTCTGCATGATTTTGTTGACTATC 57.078 30.769 0.00 0.00 0.00 2.08
371 372 7.884257 TGATTTCTGCATGATTTTGTTGACTA 58.116 30.769 0.00 0.00 0.00 2.59
373 374 6.400727 GCTGATTTCTGCATGATTTTGTTGAC 60.401 38.462 0.00 0.00 40.06 3.18
388 389 9.582431 AAATGTCATGATTAAAGCTGATTTCTG 57.418 29.630 0.00 0.00 32.01 3.02
424 433 4.457949 TGAGTGCTGATTAGACGTGACTTA 59.542 41.667 0.00 0.00 0.00 2.24
453 462 7.448748 AGATATTTAACGGCTGTTGAAAGTT 57.551 32.000 21.37 6.93 37.17 2.66
459 468 5.295787 TGCCTAAGATATTTAACGGCTGTTG 59.704 40.000 21.37 0.45 39.12 3.33
465 474 8.955061 CATGAAATGCCTAAGATATTTAACGG 57.045 34.615 0.00 0.00 37.62 4.44
527 537 3.679389 AGAAAGAAGTAGGTGTGCCATG 58.321 45.455 0.00 0.00 37.19 3.66
533 543 5.871396 TCACAAGAGAAAGAAGTAGGTGT 57.129 39.130 0.00 0.00 0.00 4.16
562 595 4.346730 TGTCATTGATGATTTGGGCTCTT 58.653 39.130 0.00 0.00 39.30 2.85
602 636 3.461085 ACAGATCCTGGATGGCTGTTAAT 59.539 43.478 19.84 3.74 36.26 1.40
606 640 0.835941 GACAGATCCTGGATGGCTGT 59.164 55.000 23.61 23.61 40.36 4.40
607 641 0.835276 TGACAGATCCTGGATGGCTG 59.165 55.000 15.25 17.47 35.51 4.85
674 726 0.610785 GATTTTGGTTGGGCCGAGGA 60.611 55.000 0.00 0.00 41.21 3.71
692 744 2.644418 GCACTGCGGCAAACATGA 59.356 55.556 3.44 0.00 0.00 3.07
754 1989 4.829968 ACCAAGAAGATGAGAGTGTGATG 58.170 43.478 0.00 0.00 0.00 3.07
837 2079 5.087323 CAGATATATAGGAGTGGTGGTGGT 58.913 45.833 0.00 0.00 0.00 4.16
838 2080 4.467795 CCAGATATATAGGAGTGGTGGTGG 59.532 50.000 0.00 0.00 0.00 4.61
839 2081 5.333581 TCCAGATATATAGGAGTGGTGGTG 58.666 45.833 2.92 0.00 0.00 4.17
840 2082 5.616975 TCCAGATATATAGGAGTGGTGGT 57.383 43.478 2.92 0.00 0.00 4.16
841 2083 5.960811 ACATCCAGATATATAGGAGTGGTGG 59.039 44.000 11.00 0.00 34.40 4.61
842 2084 7.487822 AACATCCAGATATATAGGAGTGGTG 57.512 40.000 11.00 7.57 34.40 4.17
867 2109 2.270923 GTGCATCTCTATGAACGTGCA 58.729 47.619 0.00 0.00 39.94 4.57
869 2111 3.515630 AGTGTGCATCTCTATGAACGTG 58.484 45.455 0.00 0.00 43.80 4.49
881 2123 2.032302 AGTCGATCGTCTAGTGTGCATC 59.968 50.000 15.94 0.00 0.00 3.91
882 2124 2.017782 AGTCGATCGTCTAGTGTGCAT 58.982 47.619 15.94 0.00 0.00 3.96
936 2185 1.734465 GGTGCTGCTGCTTAGTTAGTG 59.266 52.381 17.00 0.00 40.48 2.74
955 2204 8.293699 AGATTACTGGTTTTAATTAAGCCTGG 57.706 34.615 20.81 15.34 39.40 4.45
961 2215 7.254522 CGGCGCTAGATTACTGGTTTTAATTAA 60.255 37.037 7.64 0.00 0.00 1.40
963 2217 5.007332 CGGCGCTAGATTACTGGTTTTAATT 59.993 40.000 7.64 0.00 0.00 1.40
1134 2390 2.946785 CCCCGGTAGAAGTAGATGACT 58.053 52.381 0.00 0.00 41.56 3.41
1263 2519 2.361992 TCCACCGCGAGCTTCCTA 60.362 61.111 8.23 0.00 0.00 2.94
2454 3929 2.945398 TTTTTCAGCGCGCACCCAAC 62.945 55.000 35.10 0.72 0.00 3.77
2475 3950 7.286775 CCTATATAGATGAAAGGAGGGAGTAGC 59.713 44.444 11.53 0.00 0.00 3.58
2483 3958 7.979786 TTAGGCCCTATATAGATGAAAGGAG 57.020 40.000 11.53 0.00 0.00 3.69
2799 4285 0.526211 GGGCTTCTTAACGGGCAAAG 59.474 55.000 0.00 0.00 0.00 2.77
3236 4810 4.576463 AGAGTTGTGTTGTGACATCTTTCC 59.424 41.667 0.00 0.00 38.23 3.13
3237 4811 5.741388 AGAGTTGTGTTGTGACATCTTTC 57.259 39.130 0.00 0.00 38.23 2.62
3244 4818 9.730420 ATTTATGTTTTAGAGTTGTGTTGTGAC 57.270 29.630 0.00 0.00 0.00 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.