Multiple sequence alignment - TraesCS2B01G380000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G380000 chr2B 100.000 3302 0 0 1 3302 543707213 543703912 0.000000e+00 6098
1 TraesCS2B01G380000 chr2B 84.326 772 114 6 2533 3300 546866097 546866865 0.000000e+00 749
2 TraesCS2B01G380000 chr2B 96.209 211 8 0 2306 2516 543617152 543616942 2.440000e-91 346
3 TraesCS2B01G380000 chr2A 90.843 2075 110 33 460 2498 606676410 606674380 0.000000e+00 2706
4 TraesCS2B01G380000 chr2A 90.497 463 27 7 1043 1491 16774763 16775222 2.190000e-166 595
5 TraesCS2B01G380000 chr2A 95.518 357 14 2 3 358 606676810 606676455 1.330000e-158 569
6 TraesCS2B01G380000 chr2D 88.841 1855 93 36 643 2433 461545770 461543966 0.000000e+00 2174
7 TraesCS2B01G380000 chr2D 88.403 457 44 5 1 452 461546427 461545975 2.900000e-150 542
8 TraesCS2B01G380000 chr6B 84.047 771 120 3 2533 3302 671144676 671145444 0.000000e+00 739
9 TraesCS2B01G380000 chr6B 83.464 768 122 2 2533 3300 684775870 684775108 0.000000e+00 710
10 TraesCS2B01G380000 chr5B 83.787 734 117 2 2533 3265 658444223 658444955 0.000000e+00 695
11 TraesCS2B01G380000 chr5B 89.655 464 29 9 1043 1491 26024667 26024208 1.030000e-159 573
12 TraesCS2B01G380000 chr5B 93.953 215 12 1 1277 1491 550039239 550039026 1.140000e-84 324
13 TraesCS2B01G380000 chr1D 80.764 759 142 4 2537 3293 452587472 452586716 1.020000e-164 590
14 TraesCS2B01G380000 chr1A 80.739 758 144 2 2537 3293 544568419 544569175 1.020000e-164 590
15 TraesCS2B01G380000 chr6D 89.016 437 32 6 1069 1491 382038732 382038298 8.120000e-146 527
16 TraesCS2B01G380000 chr5D 84.486 477 73 1 2827 3302 535873197 535873673 1.390000e-128 470


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G380000 chr2B 543703912 543707213 3301 True 6098.0 6098 100.0000 1 3302 1 chr2B.!!$R2 3301
1 TraesCS2B01G380000 chr2B 546866097 546866865 768 False 749.0 749 84.3260 2533 3300 1 chr2B.!!$F1 767
2 TraesCS2B01G380000 chr2A 606674380 606676810 2430 True 1637.5 2706 93.1805 3 2498 2 chr2A.!!$R1 2495
3 TraesCS2B01G380000 chr2D 461543966 461546427 2461 True 1358.0 2174 88.6220 1 2433 2 chr2D.!!$R1 2432
4 TraesCS2B01G380000 chr6B 671144676 671145444 768 False 739.0 739 84.0470 2533 3302 1 chr6B.!!$F1 769
5 TraesCS2B01G380000 chr6B 684775108 684775870 762 True 710.0 710 83.4640 2533 3300 1 chr6B.!!$R1 767
6 TraesCS2B01G380000 chr5B 658444223 658444955 732 False 695.0 695 83.7870 2533 3265 1 chr5B.!!$F1 732
7 TraesCS2B01G380000 chr1D 452586716 452587472 756 True 590.0 590 80.7640 2537 3293 1 chr1D.!!$R1 756
8 TraesCS2B01G380000 chr1A 544568419 544569175 756 False 590.0 590 80.7390 2537 3293 1 chr1A.!!$F1 756

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
453 459 0.033366 TCTTCAGCTTGCGTGCTACA 59.967 50.0 2.92 0.0 41.98 2.74 F
454 460 0.164647 CTTCAGCTTGCGTGCTACAC 59.835 55.0 2.92 0.0 41.98 2.90 F
1203 1274 0.248289 GCAACGAGGTAAGGTAGCCA 59.752 55.0 0.00 0.0 0.00 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1262 1347 0.246912 CGCTGCAAGAATCGAACGAC 60.247 55.0 0.00 0.00 34.07 4.34 R
1996 2098 0.250467 TCTTCTGCTCAGCCAACCAC 60.250 55.0 0.00 0.00 0.00 4.16 R
2373 2478 0.437295 GCCTGCTTTACACGTGTACG 59.563 55.0 27.36 20.87 46.33 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.099689 AGTTGTGTTGGTGTTTCCCG 58.900 50.000 0.00 0.00 34.77 5.14
142 143 3.981071 ATTCAACTGTCCGAAGATCCA 57.019 42.857 0.00 0.00 0.00 3.41
146 147 1.924731 ACTGTCCGAAGATCCAGTCA 58.075 50.000 0.00 0.00 32.97 3.41
239 240 5.681337 AGCAGTTAAAGAAGCTCAAGTTC 57.319 39.130 0.00 0.00 30.05 3.01
242 243 5.334491 GCAGTTAAAGAAGCTCAAGTTCTCC 60.334 44.000 0.00 0.00 32.93 3.71
262 263 2.349249 CCTACAATACGGCGTAGTCTCG 60.349 54.545 25.01 13.18 34.52 4.04
264 265 0.379669 CAATACGGCGTAGTCTCGGT 59.620 55.000 25.01 3.44 0.00 4.69
358 364 7.985476 AGACATTGTAACCATACTATTTGTGC 58.015 34.615 0.00 0.00 32.98 4.57
373 379 2.435372 TGTGCAGGAGTGTCCTTTTT 57.565 45.000 0.00 0.00 46.91 1.94
375 381 3.476552 TGTGCAGGAGTGTCCTTTTTAG 58.523 45.455 0.00 0.00 46.91 1.85
382 388 6.568653 GCAGGAGTGTCCTTTTTAGTTTCATC 60.569 42.308 0.00 0.00 46.91 2.92
387 393 7.234355 AGTGTCCTTTTTAGTTTCATCTGGAT 58.766 34.615 0.00 0.00 0.00 3.41
388 394 7.175641 AGTGTCCTTTTTAGTTTCATCTGGATG 59.824 37.037 4.36 4.36 40.09 3.51
389 395 6.071952 TGTCCTTTTTAGTTTCATCTGGATGC 60.072 38.462 5.77 0.00 38.65 3.91
392 398 7.233348 TCCTTTTTAGTTTCATCTGGATGCTTT 59.767 33.333 5.77 0.00 38.65 3.51
394 400 6.899393 TTTAGTTTCATCTGGATGCTTTGT 57.101 33.333 5.77 0.00 38.65 2.83
397 403 4.083110 AGTTTCATCTGGATGCTTTGTTCG 60.083 41.667 5.77 0.00 38.65 3.95
417 423 2.928116 CGGTCTCGGGAACTCAAATAAC 59.072 50.000 0.00 0.00 0.00 1.89
418 424 3.615592 CGGTCTCGGGAACTCAAATAACA 60.616 47.826 0.00 0.00 0.00 2.41
419 425 3.683340 GGTCTCGGGAACTCAAATAACAC 59.317 47.826 0.00 0.00 0.00 3.32
420 426 4.312443 GTCTCGGGAACTCAAATAACACA 58.688 43.478 0.00 0.00 0.00 3.72
425 431 5.533154 TCGGGAACTCAAATAACACAAATGT 59.467 36.000 0.00 0.00 42.46 2.71
445 451 1.949525 TGTGGAACTTCTTCAGCTTGC 59.050 47.619 0.00 0.00 38.04 4.01
452 458 1.127582 CTTCTTCAGCTTGCGTGCTAC 59.872 52.381 2.92 0.00 41.98 3.58
453 459 0.033366 TCTTCAGCTTGCGTGCTACA 59.967 50.000 2.92 0.00 41.98 2.74
454 460 0.164647 CTTCAGCTTGCGTGCTACAC 59.835 55.000 2.92 0.00 41.98 2.90
456 479 0.320683 TCAGCTTGCGTGCTACACAT 60.321 50.000 2.92 0.00 41.98 3.21
458 481 1.021390 AGCTTGCGTGCTACACATCC 61.021 55.000 1.21 0.00 42.10 3.51
472 495 1.811965 CACATCCGCATTGTCTTCCAA 59.188 47.619 0.00 0.00 37.49 3.53
476 499 2.151202 TCCGCATTGTCTTCCAAGTTC 58.849 47.619 0.00 0.00 36.25 3.01
502 525 5.646360 GGCACAGCTTAACCATACTCTTTTA 59.354 40.000 0.00 0.00 0.00 1.52
538 561 1.020437 GCCAATTCCTCTGTGCTAGC 58.980 55.000 8.10 8.10 0.00 3.42
587 610 4.654091 TTTTTCCTGGACTGAGCAAAAG 57.346 40.909 0.00 0.00 0.00 2.27
626 649 4.628333 GCACAATGCATCAGCTTTACATTT 59.372 37.500 0.00 0.00 44.26 2.32
627 650 5.445407 GCACAATGCATCAGCTTTACATTTG 60.445 40.000 0.00 0.00 44.26 2.32
628 651 4.628333 ACAATGCATCAGCTTTACATTTGC 59.372 37.500 0.00 0.00 42.74 3.68
642 670 2.884639 ACATTTGCTGACAGTGTAACCC 59.115 45.455 3.99 0.00 37.80 4.11
766 810 7.404671 AAATACACACCAACTTGTTCTTTCT 57.595 32.000 0.00 0.00 0.00 2.52
795 839 0.311790 ACACAGCAACTTGGCATTCG 59.688 50.000 0.00 0.00 35.83 3.34
825 869 2.022129 AAACTCGAGCGAAGTGGCG 61.022 57.895 13.61 0.00 38.18 5.69
862 908 2.930562 AAGCGTGGGCCTCTCCTT 60.931 61.111 4.53 3.86 41.24 3.36
863 909 2.960688 AAGCGTGGGCCTCTCCTTC 61.961 63.158 4.53 0.00 41.24 3.46
864 910 4.821589 GCGTGGGCCTCTCCTTCG 62.822 72.222 4.53 0.00 35.39 3.79
921 968 3.231160 CAAATCGAGTGGCGGTTAAAAC 58.769 45.455 0.00 0.00 43.81 2.43
934 981 3.813166 CGGTTAAAACAGCAGAGGAGAAA 59.187 43.478 0.00 0.00 0.00 2.52
964 1011 4.208686 CTACCCTCCGTCGCAGCC 62.209 72.222 0.00 0.00 0.00 4.85
987 1034 4.056125 CTCCGGTCTGCTGCACGA 62.056 66.667 11.99 5.38 0.00 4.35
989 1036 3.414700 CCGGTCTGCTGCACGAAC 61.415 66.667 11.99 9.29 0.00 3.95
996 1064 1.364626 CTGCTGCACGAACCTCCATC 61.365 60.000 0.00 0.00 0.00 3.51
1074 1142 3.267860 CTCTTGCTGCCGCCGATC 61.268 66.667 0.00 0.00 34.43 3.69
1078 1146 4.519437 TGCTGCCGCCGATCTCTG 62.519 66.667 0.00 0.00 34.43 3.35
1109 1177 2.036604 CGGCCTCTTTCTCCTTATCCTC 59.963 54.545 0.00 0.00 0.00 3.71
1114 1182 2.695666 TCTTTCTCCTTATCCTCCAGCG 59.304 50.000 0.00 0.00 0.00 5.18
1118 1186 0.764369 TCCTTATCCTCCAGCGGCAT 60.764 55.000 1.45 0.00 0.00 4.40
1203 1274 0.248289 GCAACGAGGTAAGGTAGCCA 59.752 55.000 0.00 0.00 0.00 4.75
1221 1292 0.669625 CACCCCGTCGTCTTTCTTCC 60.670 60.000 0.00 0.00 0.00 3.46
1229 1300 3.058432 CGTCGTCTTTCTTCCTGTCTGTA 60.058 47.826 0.00 0.00 0.00 2.74
1230 1301 4.379603 CGTCGTCTTTCTTCCTGTCTGTAT 60.380 45.833 0.00 0.00 0.00 2.29
1239 1324 1.009829 CCTGTCTGTATTTGGCTCGC 58.990 55.000 0.00 0.00 0.00 5.03
1259 1344 2.511600 CTGGGCCCGTCGTTGATC 60.512 66.667 19.37 0.00 0.00 2.92
1275 1360 1.189403 GATCGCGTCGTTCGATTCTT 58.811 50.000 5.77 0.00 45.44 2.52
1895 1986 0.320073 CCGAGTGGGCAAAGTACGAA 60.320 55.000 0.00 0.00 0.00 3.85
1896 1987 1.068474 CGAGTGGGCAAAGTACGAAG 58.932 55.000 0.00 0.00 0.00 3.79
1901 1992 2.033194 GGCAAAGTACGAAGCCGCT 61.033 57.895 9.22 0.00 39.95 5.52
1902 1993 1.420312 GCAAAGTACGAAGCCGCTC 59.580 57.895 0.00 0.00 39.95 5.03
1903 1994 1.014564 GCAAAGTACGAAGCCGCTCT 61.015 55.000 0.00 0.00 39.95 4.09
1905 1996 0.389948 AAAGTACGAAGCCGCTCTGG 60.390 55.000 0.00 0.00 39.95 3.86
1919 2010 1.576356 CTCTGGCCGAGCTAAATCAC 58.424 55.000 10.89 0.00 31.99 3.06
1941 2039 2.049156 TCTCTTGCTCGCACACGG 60.049 61.111 0.00 0.00 40.63 4.94
1944 2042 2.049156 CTTGCTCGCACACGGAGA 60.049 61.111 0.00 0.00 40.63 3.71
1949 2049 1.970917 GCTCGCACACGGAGAATTGG 61.971 60.000 0.00 0.00 40.63 3.16
1962 2062 2.099592 GAGAATTGGCAATGGCGAATCA 59.900 45.455 14.47 0.00 46.06 2.57
1977 2077 2.713011 GAATCACATCGTGCTGATTGC 58.287 47.619 1.71 0.00 37.26 3.56
1983 2085 1.374343 ATCGTGCTGATTGCTGCTGG 61.374 55.000 0.00 0.00 43.37 4.85
1988 2090 1.012841 GCTGATTGCTGCTGGTACTC 58.987 55.000 0.00 0.00 38.95 2.59
1996 2098 1.005037 TGCTGGTACTCGTTGCAGG 60.005 57.895 0.00 0.00 0.00 4.85
2029 2131 2.031437 GCAGAAGAAGATGGCGAATGTC 59.969 50.000 0.00 0.00 0.00 3.06
2031 2133 3.309138 CAGAAGAAGATGGCGAATGTCAG 59.691 47.826 0.00 0.00 29.87 3.51
2108 2210 1.576421 GCTTTCAGCTGTTCGGGTG 59.424 57.895 14.67 4.67 38.45 4.61
2151 2254 0.179145 TTCTTTCTCGCCGACGGATC 60.179 55.000 20.50 0.00 40.63 3.36
2152 2255 1.138883 CTTTCTCGCCGACGGATCA 59.861 57.895 20.50 0.00 40.63 2.92
2304 2407 2.599408 TGGACGGGAGAGTCTAGTTT 57.401 50.000 0.00 0.00 40.76 2.66
2347 2452 5.581605 TGTGTTCTGTCTTCTGAAATTTGC 58.418 37.500 0.00 0.00 34.32 3.68
2380 2485 3.504863 AGTTTGCATAGTACCGTACACG 58.495 45.455 11.26 0.00 39.44 4.49
2452 2567 5.403246 GTCTCGATGACAACAGATGTAAGT 58.597 41.667 9.30 0.00 44.12 2.24
2491 2606 9.482627 AAAGATAAGTTTGACTGACTAGTTCTG 57.517 33.333 0.00 0.00 37.25 3.02
2498 2613 4.621991 TGACTGACTAGTTCTGAGCAAAC 58.378 43.478 0.00 0.00 37.25 2.93
2499 2614 4.099419 TGACTGACTAGTTCTGAGCAAACA 59.901 41.667 0.00 0.00 37.25 2.83
2500 2615 5.220710 ACTGACTAGTTCTGAGCAAACAT 57.779 39.130 0.00 0.00 31.66 2.71
2501 2616 5.233988 ACTGACTAGTTCTGAGCAAACATC 58.766 41.667 0.00 0.00 31.66 3.06
2502 2617 5.213891 TGACTAGTTCTGAGCAAACATCA 57.786 39.130 0.00 0.00 0.00 3.07
2503 2618 5.798132 TGACTAGTTCTGAGCAAACATCAT 58.202 37.500 0.00 0.00 0.00 2.45
2504 2619 6.935167 TGACTAGTTCTGAGCAAACATCATA 58.065 36.000 0.00 0.00 0.00 2.15
2505 2620 7.386059 TGACTAGTTCTGAGCAAACATCATAA 58.614 34.615 0.00 0.00 0.00 1.90
2506 2621 7.877612 TGACTAGTTCTGAGCAAACATCATAAA 59.122 33.333 0.00 0.00 0.00 1.40
2507 2622 8.034058 ACTAGTTCTGAGCAAACATCATAAAC 57.966 34.615 0.00 0.00 0.00 2.01
2508 2623 5.931532 AGTTCTGAGCAAACATCATAAACG 58.068 37.500 0.00 0.00 32.08 3.60
2509 2624 5.700832 AGTTCTGAGCAAACATCATAAACGA 59.299 36.000 0.00 0.00 32.08 3.85
2510 2625 6.204688 AGTTCTGAGCAAACATCATAAACGAA 59.795 34.615 0.00 0.00 32.08 3.85
2511 2626 6.552859 TCTGAGCAAACATCATAAACGAAA 57.447 33.333 0.00 0.00 0.00 3.46
2512 2627 6.964908 TCTGAGCAAACATCATAAACGAAAA 58.035 32.000 0.00 0.00 0.00 2.29
2513 2628 7.592938 TCTGAGCAAACATCATAAACGAAAAT 58.407 30.769 0.00 0.00 0.00 1.82
2514 2629 7.538334 TCTGAGCAAACATCATAAACGAAAATG 59.462 33.333 0.00 0.00 0.00 2.32
2515 2630 7.144661 TGAGCAAACATCATAAACGAAAATGT 58.855 30.769 0.00 0.00 32.15 2.71
2516 2631 7.651304 TGAGCAAACATCATAAACGAAAATGTT 59.349 29.630 0.00 0.00 41.09 2.71
2517 2632 8.006741 AGCAAACATCATAAACGAAAATGTTC 57.993 30.769 0.00 0.00 39.07 3.18
2518 2633 7.867403 AGCAAACATCATAAACGAAAATGTTCT 59.133 29.630 0.00 0.00 39.07 3.01
2519 2634 8.155923 GCAAACATCATAAACGAAAATGTTCTC 58.844 33.333 0.00 0.00 39.07 2.87
2520 2635 9.179552 CAAACATCATAAACGAAAATGTTCTCA 57.820 29.630 0.00 0.00 39.07 3.27
2521 2636 8.728088 AACATCATAAACGAAAATGTTCTCAC 57.272 30.769 0.00 0.00 36.14 3.51
2522 2637 7.305474 ACATCATAAACGAAAATGTTCTCACC 58.695 34.615 0.00 0.00 0.00 4.02
2523 2638 5.922546 TCATAAACGAAAATGTTCTCACCG 58.077 37.500 0.00 0.00 0.00 4.94
2524 2639 5.697178 TCATAAACGAAAATGTTCTCACCGA 59.303 36.000 0.00 0.00 0.00 4.69
2525 2640 4.468095 AAACGAAAATGTTCTCACCGAG 57.532 40.909 0.00 0.00 0.00 4.63
2526 2641 1.798813 ACGAAAATGTTCTCACCGAGC 59.201 47.619 0.00 0.00 0.00 5.03
2527 2642 1.798223 CGAAAATGTTCTCACCGAGCA 59.202 47.619 0.00 0.00 37.26 4.26
2528 2643 2.223144 CGAAAATGTTCTCACCGAGCAA 59.777 45.455 0.00 0.00 36.41 3.91
2529 2644 3.303725 CGAAAATGTTCTCACCGAGCAAA 60.304 43.478 0.00 0.00 36.41 3.68
2530 2645 3.626028 AAATGTTCTCACCGAGCAAAC 57.374 42.857 0.00 0.00 36.41 2.93
2531 2646 2.254546 ATGTTCTCACCGAGCAAACA 57.745 45.000 2.03 2.03 36.41 2.83
2532 2647 2.254546 TGTTCTCACCGAGCAAACAT 57.745 45.000 0.00 0.00 29.28 2.71
2533 2648 2.143122 TGTTCTCACCGAGCAAACATC 58.857 47.619 0.00 0.00 29.28 3.06
2534 2649 2.143122 GTTCTCACCGAGCAAACATCA 58.857 47.619 0.00 0.00 0.00 3.07
2535 2650 2.744202 GTTCTCACCGAGCAAACATCAT 59.256 45.455 0.00 0.00 0.00 2.45
2554 2669 4.144297 TCATAAACTGCACTCCAAAAGCT 58.856 39.130 0.00 0.00 0.00 3.74
2587 2702 4.610605 TCTCACCAATCGAGTAAAACCA 57.389 40.909 0.00 0.00 0.00 3.67
2635 2751 1.265905 CAAACTGGTTTCCTACACGGC 59.734 52.381 0.00 0.00 0.00 5.68
2695 2811 3.932580 TAGCGCTTGCCACACTCGG 62.933 63.158 18.68 0.00 40.41 4.63
2706 2822 0.609131 CACACTCGGAAAGCCCCAAT 60.609 55.000 0.00 0.00 0.00 3.16
2711 2829 0.331278 TCGGAAAGCCCCAATCATGT 59.669 50.000 0.00 0.00 0.00 3.21
2713 2831 1.550072 CGGAAAGCCCCAATCATGTTT 59.450 47.619 0.00 0.00 0.00 2.83
2731 2849 7.908230 TCATGTTTTTCAAACTTGATTTCAGC 58.092 30.769 11.79 0.00 37.00 4.26
2776 2894 7.232330 TGTTGGTCCTCTCTCATATCTATCTTG 59.768 40.741 0.00 0.00 0.00 3.02
2779 2897 6.127647 GGTCCTCTCTCATATCTATCTTGCAG 60.128 46.154 0.00 0.00 0.00 4.41
2782 2900 4.157472 TCTCTCATATCTATCTTGCAGGCG 59.843 45.833 0.00 0.00 0.00 5.52
2815 2933 4.891756 CCTCTCATTTTCTATGCATGGGTT 59.108 41.667 10.16 0.00 0.00 4.11
2827 2945 4.517952 TGCATGGGTTAACAACATTCTG 57.482 40.909 8.10 3.15 0.00 3.02
2830 2948 4.236935 CATGGGTTAACAACATTCTGCAC 58.763 43.478 8.10 0.00 0.00 4.57
2833 2951 3.067461 GGGTTAACAACATTCTGCACACA 59.933 43.478 8.10 0.00 0.00 3.72
2862 2980 1.604278 GGCGATTCTCCTTAATGGCAC 59.396 52.381 0.00 0.00 40.96 5.01
2863 2981 1.604278 GCGATTCTCCTTAATGGCACC 59.396 52.381 0.00 0.00 39.53 5.01
2896 3014 3.571401 GGATCCAATGTAGAAATGGCCTG 59.429 47.826 6.95 0.00 34.13 4.85
2899 3017 0.740737 AATGTAGAAATGGCCTGCGC 59.259 50.000 3.32 0.00 0.00 6.09
2963 3081 5.209818 TGACGTTCTACAAAGGTTGATCT 57.790 39.130 0.00 0.00 0.00 2.75
2971 3089 0.332972 AAAGGTTGATCTCCCAGGCC 59.667 55.000 0.00 0.00 0.00 5.19
2975 3093 0.462759 GTTGATCTCCCAGGCCTTCG 60.463 60.000 0.00 0.00 0.00 3.79
3004 3122 3.197766 ACGAACTATGCCATCCTCTCAAA 59.802 43.478 0.00 0.00 0.00 2.69
3005 3123 4.141620 ACGAACTATGCCATCCTCTCAAAT 60.142 41.667 0.00 0.00 0.00 2.32
3019 3137 5.070180 TCCTCTCAAATCTAATGAGCCTCTG 59.930 44.000 0.00 0.00 43.19 3.35
3022 3140 4.774124 TCAAATCTAATGAGCCTCTGGTG 58.226 43.478 0.00 0.00 0.00 4.17
3070 3188 1.060937 CATTGCCGCTGCTAACGTC 59.939 57.895 0.70 0.00 38.71 4.34
3080 3198 3.007070 GCTAACGTCGCCACAACCG 62.007 63.158 0.00 0.00 0.00 4.44
3094 3212 2.354510 CACAACCGCAACTCTCAAGAAA 59.645 45.455 0.00 0.00 0.00 2.52
3130 3248 0.321653 CCCTTGCGACTGGCTTAGTT 60.322 55.000 0.00 0.00 40.53 2.24
3133 3251 3.270877 CCTTGCGACTGGCTTAGTTATT 58.729 45.455 0.00 0.00 40.53 1.40
3173 3291 1.497278 CTCACAATTGCCACGGACG 59.503 57.895 5.05 0.00 0.00 4.79
3174 3292 0.948623 CTCACAATTGCCACGGACGA 60.949 55.000 5.05 0.00 0.00 4.20
3175 3293 0.321210 TCACAATTGCCACGGACGAT 60.321 50.000 5.05 0.00 0.00 3.73
3177 3295 0.521291 ACAATTGCCACGGACGATTG 59.479 50.000 5.05 14.12 42.33 2.67
3181 3299 4.147322 GCCACGGACGATTGCACG 62.147 66.667 0.00 0.00 39.31 5.34
3199 3317 2.371923 GCAAAACGACATTGCGGCC 61.372 57.895 0.00 0.00 43.14 6.13
3205 3323 2.202878 GACATTGCGGCCGCTCTA 60.203 61.111 45.79 32.05 42.51 2.43
3226 3344 3.599348 AGGGTGTAACTTCTCCTCCTTT 58.401 45.455 0.00 0.00 36.74 3.11
3235 3353 5.500546 ACTTCTCCTCCTTTCCGTTAATT 57.499 39.130 0.00 0.00 0.00 1.40
3266 3384 1.380302 CCACTCTCCCCCACCAAAG 59.620 63.158 0.00 0.00 0.00 2.77
3280 3398 0.253327 CCAAAGTACCCCTCTCAGCC 59.747 60.000 0.00 0.00 0.00 4.85
3286 3404 0.261991 TACCCCTCTCAGCCTTCGAT 59.738 55.000 0.00 0.00 0.00 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 1.096416 GACGGGAAACACCAACACAA 58.904 50.000 0.00 0.00 41.20 3.33
29 30 1.160329 ACAACAGCTCTTGCACCGAC 61.160 55.000 1.13 0.00 42.74 4.79
140 141 1.016627 CCGTATGTGGCAATGACTGG 58.983 55.000 0.00 0.00 0.00 4.00
142 143 3.476740 CCCGTATGTGGCAATGACT 57.523 52.632 0.00 0.00 0.00 3.41
239 240 2.877168 AGACTACGCCGTATTGTAGGAG 59.123 50.000 0.00 0.00 41.84 3.69
242 243 2.349249 CCGAGACTACGCCGTATTGTAG 60.349 54.545 0.00 0.00 42.91 2.74
373 379 5.122239 CGAACAAAGCATCCAGATGAAACTA 59.878 40.000 11.81 0.00 41.20 2.24
375 381 4.161333 CGAACAAAGCATCCAGATGAAAC 58.839 43.478 11.81 0.00 41.20 2.78
382 388 1.734465 GAGACCGAACAAAGCATCCAG 59.266 52.381 0.00 0.00 0.00 3.86
387 393 1.301401 CCCGAGACCGAACAAAGCA 60.301 57.895 0.00 0.00 38.22 3.91
388 394 0.601841 TTCCCGAGACCGAACAAAGC 60.602 55.000 0.00 0.00 38.22 3.51
389 395 1.145803 GTTCCCGAGACCGAACAAAG 58.854 55.000 0.00 0.00 38.58 2.77
392 398 0.824595 TGAGTTCCCGAGACCGAACA 60.825 55.000 0.00 0.00 40.69 3.18
394 400 1.042229 TTTGAGTTCCCGAGACCGAA 58.958 50.000 0.00 0.00 38.22 4.30
397 403 3.683340 GTGTTATTTGAGTTCCCGAGACC 59.317 47.826 0.00 0.00 0.00 3.85
418 424 4.202050 GCTGAAGAAGTTCCACACATTTGT 60.202 41.667 0.00 0.00 35.84 2.83
419 425 4.037208 AGCTGAAGAAGTTCCACACATTTG 59.963 41.667 0.00 0.00 0.00 2.32
420 426 4.210331 AGCTGAAGAAGTTCCACACATTT 58.790 39.130 0.00 0.00 0.00 2.32
425 431 1.949525 GCAAGCTGAAGAAGTTCCACA 59.050 47.619 0.00 0.00 0.00 4.17
445 451 0.026674 CAATGCGGATGTGTAGCACG 59.973 55.000 0.00 0.00 44.12 5.34
452 458 1.452110 TGGAAGACAATGCGGATGTG 58.548 50.000 0.00 0.00 0.00 3.21
453 459 2.086869 CTTGGAAGACAATGCGGATGT 58.913 47.619 0.00 0.00 38.65 3.06
454 460 2.086869 ACTTGGAAGACAATGCGGATG 58.913 47.619 0.00 0.00 38.65 3.51
456 479 2.151202 GAACTTGGAAGACAATGCGGA 58.849 47.619 0.00 0.00 38.65 5.54
458 481 3.193157 CAGAACTTGGAAGACAATGCG 57.807 47.619 0.00 0.00 38.65 4.73
472 495 1.142870 TGGTTAAGCTGTGCCAGAACT 59.857 47.619 6.19 0.00 32.44 3.01
476 499 2.939103 GAGTATGGTTAAGCTGTGCCAG 59.061 50.000 6.19 0.00 34.18 4.85
495 518 6.364435 GCAAGAACAAGGCTTCAATAAAAGAG 59.636 38.462 0.00 0.00 0.00 2.85
502 525 2.318908 TGGCAAGAACAAGGCTTCAAT 58.681 42.857 0.00 0.00 0.00 2.57
571 594 2.261215 GCCTTTTGCTCAGTCCAGG 58.739 57.895 0.00 0.00 36.87 4.45
591 614 0.664166 CATTGTGCAAACTGGGCGTC 60.664 55.000 0.00 0.00 0.00 5.19
626 649 0.250295 GCAGGGTTACACTGTCAGCA 60.250 55.000 16.50 0.00 38.22 4.41
627 650 0.035458 AGCAGGGTTACACTGTCAGC 59.965 55.000 16.50 1.25 38.22 4.26
628 651 1.800805 CAGCAGGGTTACACTGTCAG 58.199 55.000 16.50 2.81 38.22 3.51
766 810 6.049149 GCCAAGTTGCTGTGTATATTCTCTA 58.951 40.000 0.00 0.00 0.00 2.43
795 839 0.889186 TCGAGTTTGCCTGGCTTTCC 60.889 55.000 21.03 5.22 0.00 3.13
863 909 4.410400 AAGGCGGGAAGGGAAGCG 62.410 66.667 0.00 0.00 0.00 4.68
864 910 2.751837 CAAGGCGGGAAGGGAAGC 60.752 66.667 0.00 0.00 0.00 3.86
921 968 2.304180 TCCCTTTCTTTCTCCTCTGCTG 59.696 50.000 0.00 0.00 0.00 4.41
964 1011 3.073735 AGCAGACCGGAGCCTCTG 61.074 66.667 9.46 12.39 37.55 3.35
966 1013 4.828925 GCAGCAGACCGGAGCCTC 62.829 72.222 9.46 0.00 0.00 4.70
1074 1142 4.821589 GCCGACGGCTTCCCAGAG 62.822 72.222 31.30 0.00 46.69 3.35
1093 1161 2.695666 CGCTGGAGGATAAGGAGAAAGA 59.304 50.000 0.00 0.00 0.00 2.52
1094 1162 2.224161 CCGCTGGAGGATAAGGAGAAAG 60.224 54.545 0.00 0.00 0.00 2.62
1095 1163 1.762957 CCGCTGGAGGATAAGGAGAAA 59.237 52.381 0.00 0.00 0.00 2.52
1096 1164 1.414158 CCGCTGGAGGATAAGGAGAA 58.586 55.000 0.00 0.00 0.00 2.87
1203 1274 0.830866 AGGAAGAAAGACGACGGGGT 60.831 55.000 0.00 0.00 0.00 4.95
1221 1292 1.009829 GGCGAGCCAAATACAGACAG 58.990 55.000 9.58 0.00 35.81 3.51
1229 1300 2.273449 CCCAGAGGCGAGCCAAAT 59.727 61.111 17.18 0.00 38.92 2.32
1239 1324 4.760047 CAACGACGGGCCCAGAGG 62.760 72.222 24.92 7.89 0.00 3.69
1259 1344 1.295220 GCAAGAATCGAACGACGCG 60.295 57.895 3.53 3.53 42.26 6.01
1262 1347 0.246912 CGCTGCAAGAATCGAACGAC 60.247 55.000 0.00 0.00 34.07 4.34
1385 1470 4.271816 AGCGCGATGAGGCTACCG 62.272 66.667 12.10 0.00 37.83 4.02
1901 1992 1.195115 AGTGATTTAGCTCGGCCAGA 58.805 50.000 2.24 0.00 0.00 3.86
1902 1993 2.029838 AAGTGATTTAGCTCGGCCAG 57.970 50.000 2.24 0.00 0.00 4.85
1903 1994 2.500098 AGTAAGTGATTTAGCTCGGCCA 59.500 45.455 2.24 0.00 0.00 5.36
1905 1996 4.045783 GAGAGTAAGTGATTTAGCTCGGC 58.954 47.826 0.00 0.00 30.92 5.54
1906 1997 5.508200 AGAGAGTAAGTGATTTAGCTCGG 57.492 43.478 0.00 0.00 32.85 4.63
1907 1998 5.231147 GCAAGAGAGTAAGTGATTTAGCTCG 59.769 44.000 0.00 0.00 32.85 5.03
1908 1999 6.337356 AGCAAGAGAGTAAGTGATTTAGCTC 58.663 40.000 0.00 0.00 0.00 4.09
1909 2000 6.293004 AGCAAGAGAGTAAGTGATTTAGCT 57.707 37.500 0.00 0.00 0.00 3.32
1910 2001 5.231147 CGAGCAAGAGAGTAAGTGATTTAGC 59.769 44.000 0.00 0.00 0.00 3.09
1911 2002 5.231147 GCGAGCAAGAGAGTAAGTGATTTAG 59.769 44.000 0.00 0.00 0.00 1.85
1912 2003 5.103000 GCGAGCAAGAGAGTAAGTGATTTA 58.897 41.667 0.00 0.00 0.00 1.40
1913 2004 3.929610 GCGAGCAAGAGAGTAAGTGATTT 59.070 43.478 0.00 0.00 0.00 2.17
1914 2005 3.056536 TGCGAGCAAGAGAGTAAGTGATT 60.057 43.478 0.00 0.00 0.00 2.57
1915 2006 2.493675 TGCGAGCAAGAGAGTAAGTGAT 59.506 45.455 0.00 0.00 0.00 3.06
1916 2007 1.886542 TGCGAGCAAGAGAGTAAGTGA 59.113 47.619 0.00 0.00 0.00 3.41
1917 2008 1.989165 GTGCGAGCAAGAGAGTAAGTG 59.011 52.381 0.00 0.00 0.00 3.16
1918 2009 1.613925 TGTGCGAGCAAGAGAGTAAGT 59.386 47.619 0.00 0.00 0.00 2.24
1919 2010 1.989165 GTGTGCGAGCAAGAGAGTAAG 59.011 52.381 0.00 0.00 0.00 2.34
1941 2039 2.099592 TGATTCGCCATTGCCAATTCTC 59.900 45.455 0.00 0.00 27.75 2.87
1944 2042 1.549620 TGTGATTCGCCATTGCCAATT 59.450 42.857 0.00 0.00 27.75 2.32
1949 2049 0.378257 ACGATGTGATTCGCCATTGC 59.622 50.000 0.00 0.00 42.82 3.56
1977 2077 2.449548 CTGCAACGAGTACCAGCAG 58.550 57.895 0.00 0.00 45.44 4.24
1983 2085 0.865769 CAACCACCTGCAACGAGTAC 59.134 55.000 0.00 0.00 0.00 2.73
1988 2090 2.906897 AGCCAACCACCTGCAACG 60.907 61.111 0.00 0.00 0.00 4.10
1996 2098 0.250467 TCTTCTGCTCAGCCAACCAC 60.250 55.000 0.00 0.00 0.00 4.16
2029 2131 1.077212 CACAGGGGAATCAGGCCTG 60.077 63.158 27.87 27.87 35.00 4.85
2031 2133 1.379044 CACACAGGGGAATCAGGCC 60.379 63.158 0.00 0.00 0.00 5.19
2066 2168 3.745975 TCAGCGAAATGTTCAGACGAATT 59.254 39.130 0.00 0.00 32.61 2.17
2067 2169 3.325870 TCAGCGAAATGTTCAGACGAAT 58.674 40.909 0.00 0.00 32.61 3.34
2151 2254 1.796151 CAGGTACCTGCGCACAATG 59.204 57.895 28.48 3.15 37.24 2.82
2152 2255 4.301505 CAGGTACCTGCGCACAAT 57.698 55.556 28.48 0.00 37.24 2.71
2345 2450 1.354040 CAAACTTGCAAAACCACGCA 58.646 45.000 0.00 0.00 36.05 5.24
2368 2473 2.293122 TGCTTTACACGTGTACGGTACT 59.707 45.455 27.36 1.80 44.95 2.73
2370 2475 2.351641 CCTGCTTTACACGTGTACGGTA 60.352 50.000 27.36 19.32 44.95 4.02
2373 2478 0.437295 GCCTGCTTTACACGTGTACG 59.563 55.000 27.36 20.87 46.33 3.67
2374 2479 1.504359 TGCCTGCTTTACACGTGTAC 58.496 50.000 27.36 16.65 0.00 2.90
2380 2485 1.178534 TGCCCTTGCCTGCTTTACAC 61.179 55.000 0.00 0.00 36.33 2.90
2471 2586 5.163405 TGCTCAGAACTAGTCAGTCAAACTT 60.163 40.000 0.00 0.00 32.29 2.66
2491 2606 7.566858 ACATTTTCGTTTATGATGTTTGCTC 57.433 32.000 0.00 0.00 0.00 4.26
2498 2613 6.465781 CGGTGAGAACATTTTCGTTTATGATG 59.534 38.462 0.00 0.00 36.78 3.07
2499 2614 6.370442 TCGGTGAGAACATTTTCGTTTATGAT 59.630 34.615 0.00 0.00 36.78 2.45
2500 2615 5.697178 TCGGTGAGAACATTTTCGTTTATGA 59.303 36.000 0.00 0.00 36.78 2.15
2501 2616 5.922546 TCGGTGAGAACATTTTCGTTTATG 58.077 37.500 0.00 0.00 36.78 1.90
2502 2617 5.390567 GCTCGGTGAGAACATTTTCGTTTAT 60.391 40.000 0.00 0.00 36.78 1.40
2503 2618 4.084223 GCTCGGTGAGAACATTTTCGTTTA 60.084 41.667 0.00 0.00 36.78 2.01
2504 2619 3.303791 GCTCGGTGAGAACATTTTCGTTT 60.304 43.478 0.00 0.00 36.78 3.60
2505 2620 2.223377 GCTCGGTGAGAACATTTTCGTT 59.777 45.455 0.00 0.00 36.78 3.85
2506 2621 1.798813 GCTCGGTGAGAACATTTTCGT 59.201 47.619 0.00 0.00 36.78 3.85
2507 2622 1.798223 TGCTCGGTGAGAACATTTTCG 59.202 47.619 0.00 0.00 36.78 3.46
2508 2623 3.896648 TTGCTCGGTGAGAACATTTTC 57.103 42.857 0.00 0.00 0.00 2.29
2509 2624 3.380004 TGTTTGCTCGGTGAGAACATTTT 59.620 39.130 0.00 0.00 26.87 1.82
2510 2625 2.948979 TGTTTGCTCGGTGAGAACATTT 59.051 40.909 0.00 0.00 26.87 2.32
2511 2626 2.571212 TGTTTGCTCGGTGAGAACATT 58.429 42.857 0.00 0.00 26.87 2.71
2512 2627 2.254546 TGTTTGCTCGGTGAGAACAT 57.745 45.000 0.00 0.00 26.87 2.71
2513 2628 2.143122 GATGTTTGCTCGGTGAGAACA 58.857 47.619 0.00 1.20 33.26 3.18
2514 2629 2.143122 TGATGTTTGCTCGGTGAGAAC 58.857 47.619 0.00 0.00 0.00 3.01
2515 2630 2.542020 TGATGTTTGCTCGGTGAGAA 57.458 45.000 0.00 0.00 0.00 2.87
2516 2631 2.768253 ATGATGTTTGCTCGGTGAGA 57.232 45.000 0.00 0.00 0.00 3.27
2517 2632 4.393062 AGTTTATGATGTTTGCTCGGTGAG 59.607 41.667 0.00 0.00 0.00 3.51
2518 2633 4.154015 CAGTTTATGATGTTTGCTCGGTGA 59.846 41.667 0.00 0.00 0.00 4.02
2519 2634 4.406069 CAGTTTATGATGTTTGCTCGGTG 58.594 43.478 0.00 0.00 0.00 4.94
2520 2635 3.119849 GCAGTTTATGATGTTTGCTCGGT 60.120 43.478 0.00 0.00 0.00 4.69
2521 2636 3.119884 TGCAGTTTATGATGTTTGCTCGG 60.120 43.478 0.00 0.00 33.00 4.63
2522 2637 3.848019 GTGCAGTTTATGATGTTTGCTCG 59.152 43.478 0.00 0.00 33.00 5.03
2523 2638 5.051891 AGTGCAGTTTATGATGTTTGCTC 57.948 39.130 0.00 0.00 33.00 4.26
2524 2639 4.082571 GGAGTGCAGTTTATGATGTTTGCT 60.083 41.667 0.00 0.00 33.00 3.91
2525 2640 4.168760 GGAGTGCAGTTTATGATGTTTGC 58.831 43.478 0.00 0.00 0.00 3.68
2526 2641 5.375417 TGGAGTGCAGTTTATGATGTTTG 57.625 39.130 0.00 0.00 0.00 2.93
2527 2642 6.403866 TTTGGAGTGCAGTTTATGATGTTT 57.596 33.333 0.00 0.00 0.00 2.83
2528 2643 6.403866 TTTTGGAGTGCAGTTTATGATGTT 57.596 33.333 0.00 0.00 0.00 2.71
2529 2644 5.565439 GCTTTTGGAGTGCAGTTTATGATGT 60.565 40.000 0.00 0.00 0.00 3.06
2530 2645 4.860907 GCTTTTGGAGTGCAGTTTATGATG 59.139 41.667 0.00 0.00 0.00 3.07
2531 2646 4.768968 AGCTTTTGGAGTGCAGTTTATGAT 59.231 37.500 0.00 0.00 0.00 2.45
2532 2647 4.022935 CAGCTTTTGGAGTGCAGTTTATGA 60.023 41.667 0.00 0.00 0.00 2.15
2533 2648 4.232221 CAGCTTTTGGAGTGCAGTTTATG 58.768 43.478 0.00 0.00 0.00 1.90
2534 2649 3.891366 ACAGCTTTTGGAGTGCAGTTTAT 59.109 39.130 0.00 0.00 0.00 1.40
2535 2650 3.066621 CACAGCTTTTGGAGTGCAGTTTA 59.933 43.478 0.00 0.00 0.00 2.01
2554 2669 1.150536 GGTGAGAACCTTGGCCACA 59.849 57.895 3.88 0.00 0.00 4.17
2587 2702 4.357325 AGTGAATGAGTAGTGGGATGAGT 58.643 43.478 0.00 0.00 0.00 3.41
2623 2739 1.962306 GTTGCGGCCGTGTAGGAAA 60.962 57.895 28.70 7.27 45.00 3.13
2629 2745 3.124921 GCTATGTTGCGGCCGTGT 61.125 61.111 28.70 10.85 0.00 4.49
2665 2781 0.679505 AAGCGCTAAGGATATCCGCA 59.320 50.000 12.05 10.90 46.33 5.69
2668 2784 1.270839 TGGCAAGCGCTAAGGATATCC 60.271 52.381 12.05 14.41 38.60 2.59
2695 2811 4.640364 TGAAAAACATGATTGGGGCTTTC 58.360 39.130 0.00 0.00 0.00 2.62
2706 2822 7.548427 TGCTGAAATCAAGTTTGAAAAACATGA 59.452 29.630 11.73 11.73 41.13 3.07
2711 2829 7.094890 TGCTTTGCTGAAATCAAGTTTGAAAAA 60.095 29.630 0.00 0.00 41.13 1.94
2713 2831 5.873712 TGCTTTGCTGAAATCAAGTTTGAAA 59.126 32.000 0.00 0.00 41.13 2.69
2731 2849 4.675190 ACAGATCGAGTCAAATGCTTTG 57.325 40.909 0.00 3.17 41.96 2.77
2796 2914 7.039434 TGTTGTTAACCCATGCATAGAAAATGA 60.039 33.333 0.00 0.00 0.00 2.57
2797 2915 7.095910 TGTTGTTAACCCATGCATAGAAAATG 58.904 34.615 0.00 0.00 0.00 2.32
2800 2918 6.849085 ATGTTGTTAACCCATGCATAGAAA 57.151 33.333 0.00 0.00 0.00 2.52
2805 2923 4.621274 GCAGAATGTTGTTAACCCATGCAT 60.621 41.667 13.17 0.00 39.31 3.96
2815 2933 2.293122 GCCTGTGTGCAGAATGTTGTTA 59.707 45.455 0.00 0.00 45.28 2.41
2827 2945 2.658268 GCCGTTTTGCCTGTGTGC 60.658 61.111 0.00 0.00 0.00 4.57
2830 2948 0.729140 GAATCGCCGTTTTGCCTGTG 60.729 55.000 0.00 0.00 0.00 3.66
2833 2951 1.305930 GGAGAATCGCCGTTTTGCCT 61.306 55.000 0.00 0.00 34.37 4.75
2845 2963 2.587522 GGGGTGCCATTAAGGAGAATC 58.412 52.381 0.00 0.00 41.22 2.52
2862 2980 3.489513 GGATCCAAGACCCCGGGG 61.490 72.222 39.18 39.18 42.03 5.73
2863 2981 1.645402 ATTGGATCCAAGACCCCGGG 61.645 60.000 29.98 15.80 39.47 5.73
2971 3089 1.396996 CATAGTTCGTTTGGCCCGAAG 59.603 52.381 14.53 1.28 44.14 3.79
2975 3093 0.963355 TGGCATAGTTCGTTTGGCCC 60.963 55.000 0.00 0.00 40.64 5.80
3004 3122 2.703007 GGTCACCAGAGGCTCATTAGAT 59.297 50.000 18.26 0.00 0.00 1.98
3005 3123 2.111384 GGTCACCAGAGGCTCATTAGA 58.889 52.381 18.26 6.46 0.00 2.10
3019 3137 0.535102 CGGCATATTGGAGGGTCACC 60.535 60.000 0.00 0.00 0.00 4.02
3022 3140 0.600255 CGTCGGCATATTGGAGGGTC 60.600 60.000 0.00 0.00 0.00 4.46
3070 3188 2.954753 GAGAGTTGCGGTTGTGGCG 61.955 63.158 0.00 0.00 0.00 5.69
3094 3212 1.561542 AGGGCGGAATCATCAAGAGTT 59.438 47.619 0.00 0.00 0.00 3.01
3150 3268 1.236616 CGTGGCAATTGTGAGCAGGA 61.237 55.000 7.40 0.00 0.00 3.86
3151 3269 1.210931 CGTGGCAATTGTGAGCAGG 59.789 57.895 7.40 0.00 0.00 4.85
3154 3272 1.210155 GTCCGTGGCAATTGTGAGC 59.790 57.895 7.40 0.00 0.00 4.26
3173 3291 1.685302 ATGTCGTTTTGCGTGCAATC 58.315 45.000 8.26 4.43 42.13 2.67
3174 3292 1.786004 CAATGTCGTTTTGCGTGCAAT 59.214 42.857 8.26 0.00 42.13 3.56
3175 3293 1.195347 CAATGTCGTTTTGCGTGCAA 58.805 45.000 2.58 2.58 42.13 4.08
3177 3295 1.482531 GCAATGTCGTTTTGCGTGC 59.517 52.632 4.51 0.00 39.98 5.34
3181 3299 2.371923 GGCCGCAATGTCGTTTTGC 61.372 57.895 8.85 8.85 44.68 3.68
3196 3314 1.143401 GTTACACCCTAGAGCGGCC 59.857 63.158 0.00 0.00 0.00 6.13
3199 3317 2.099427 GGAGAAGTTACACCCTAGAGCG 59.901 54.545 0.00 0.00 0.00 5.03
3205 3323 3.277416 AAGGAGGAGAAGTTACACCCT 57.723 47.619 0.00 0.00 0.00 4.34
3226 3344 3.389002 GGAGGCCTAGGTAAATTAACGGA 59.611 47.826 4.42 0.00 0.00 4.69
3235 3353 1.016415 AGAGTGGGAGGCCTAGGTAA 58.984 55.000 4.42 0.00 0.00 2.85
3259 3377 1.339151 GCTGAGAGGGGTACTTTGGTG 60.339 57.143 0.00 0.00 0.00 4.17
3266 3384 0.683504 TCGAAGGCTGAGAGGGGTAC 60.684 60.000 0.00 0.00 0.00 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.