Multiple sequence alignment - TraesCS2B01G379600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G379600 chr2B 100.000 6919 0 0 1 6919 542922592 542915674 0.000000e+00 12778.0
1 TraesCS2B01G379600 chr2B 95.113 266 11 2 2628 2891 775369853 775370118 1.070000e-112 418.0
2 TraesCS2B01G379600 chr2D 87.308 2474 158 56 4503 6898 461084505 461082110 0.000000e+00 2686.0
3 TraesCS2B01G379600 chr2D 85.292 1455 111 55 4 1421 461094261 461092873 0.000000e+00 1406.0
4 TraesCS2B01G379600 chr2D 94.662 843 37 6 2889 3728 461086957 461086120 0.000000e+00 1301.0
5 TraesCS2B01G379600 chr2D 95.169 414 17 3 1519 1930 461092836 461092424 0.000000e+00 651.0
6 TraesCS2B01G379600 chr2D 94.753 324 13 1 2311 2630 461087279 461086956 1.040000e-137 501.0
7 TraesCS2B01G379600 chr2D 94.375 320 13 4 1922 2238 461088016 461087699 2.900000e-133 486.0
8 TraesCS2B01G379600 chr2D 93.796 274 17 0 3795 4068 461086108 461085835 4.990000e-111 412.0
9 TraesCS2B01G379600 chr2D 94.222 225 11 2 4101 4324 461084827 461084604 6.650000e-90 342.0
10 TraesCS2B01G379600 chr2D 94.702 151 6 2 1737 1886 619541159 619541010 4.170000e-57 233.0
11 TraesCS2B01G379600 chr2D 95.833 120 4 1 3695 3813 619538477 619538358 7.080000e-45 193.0
12 TraesCS2B01G379600 chr2D 94.048 84 4 1 2235 2317 461087634 461087551 7.290000e-25 126.0
13 TraesCS2B01G379600 chr2D 92.105 76 5 1 4386 4460 461084590 461084515 9.490000e-19 106.0
14 TraesCS2B01G379600 chr2D 85.000 60 6 3 4047 4105 387225390 387225447 2.700000e-04 58.4
15 TraesCS2B01G379600 chr2A 90.518 1466 90 17 1 1447 604866167 604864732 0.000000e+00 1892.0
16 TraesCS2B01G379600 chr2A 96.733 704 14 8 1542 2238 604864732 604864031 0.000000e+00 1164.0
17 TraesCS2B01G379600 chr2A 86.516 1016 74 23 5262 6234 604861062 604860067 0.000000e+00 1059.0
18 TraesCS2B01G379600 chr2A 94.745 666 32 3 2889 3554 604863569 604862907 0.000000e+00 1033.0
19 TraesCS2B01G379600 chr2A 93.911 427 18 4 4379 4797 604862090 604861664 7.570000e-179 638.0
20 TraesCS2B01G379600 chr2A 94.250 400 18 2 2235 2630 604863966 604863568 2.130000e-169 606.0
21 TraesCS2B01G379600 chr2A 86.032 494 32 17 6327 6801 604843465 604842990 4.820000e-136 496.0
22 TraesCS2B01G379600 chr2A 93.581 296 16 3 4101 4393 604862402 604862107 8.240000e-119 438.0
23 TraesCS2B01G379600 chr2A 93.000 300 18 1 3779 4078 604862679 604862383 1.070000e-117 435.0
24 TraesCS2B01G379600 chr2A 96.212 264 8 2 2629 2890 575349283 575349020 1.380000e-116 431.0
25 TraesCS2B01G379600 chr2A 89.510 286 24 4 4968 5248 604861400 604861116 2.370000e-94 357.0
26 TraesCS2B01G379600 chr2A 91.538 130 11 0 3653 3782 604862910 604862781 5.510000e-41 180.0
27 TraesCS2B01G379600 chr2A 94.545 110 4 1 4791 4898 604861638 604861529 1.190000e-37 169.0
28 TraesCS2B01G379600 chr2A 91.589 107 7 2 5581 5686 678362931 678363036 5.590000e-31 147.0
29 TraesCS2B01G379600 chr2A 91.509 106 5 4 5584 5686 310408991 310408887 7.230000e-30 143.0
30 TraesCS2B01G379600 chr2A 92.473 93 7 0 6222 6314 604860048 604859956 4.350000e-27 134.0
31 TraesCS2B01G379600 chr2A 92.000 75 5 1 6844 6917 604842717 604842643 3.410000e-18 104.0
32 TraesCS2B01G379600 chr6B 96.241 266 8 1 2627 2890 682421357 682421622 1.070000e-117 435.0
33 TraesCS2B01G379600 chr6B 100.000 34 0 0 4072 4105 345206540 345206573 5.790000e-06 63.9
34 TraesCS2B01G379600 chr5B 95.896 268 9 1 2629 2894 35776700 35776433 3.830000e-117 433.0
35 TraesCS2B01G379600 chr5B 95.849 265 9 1 2629 2891 577245860 577245596 1.780000e-115 427.0
36 TraesCS2B01G379600 chr3B 96.212 264 8 1 2629 2890 17707715 17707978 1.380000e-116 431.0
37 TraesCS2B01G379600 chr3B 95.094 265 11 2 2629 2891 368323062 368322798 3.860000e-112 416.0
38 TraesCS2B01G379600 chr3B 95.076 264 12 1 2629 2891 821230153 821230416 1.390000e-111 414.0
39 TraesCS2B01G379600 chr3B 94.000 100 5 1 5584 5682 521797859 521797760 4.320000e-32 150.0
40 TraesCS2B01G379600 chr1B 95.094 265 10 2 2629 2890 642774643 642774379 1.390000e-111 414.0
41 TraesCS2B01G379600 chr1B 91.045 67 6 0 1049 1115 75076111 75076177 2.660000e-14 91.6
42 TraesCS2B01G379600 chr1B 97.561 41 1 0 187 227 269208687 269208647 3.460000e-08 71.3
43 TraesCS2B01G379600 chr3D 95.364 151 5 2 1737 1886 152560833 152560982 8.970000e-59 239.0
44 TraesCS2B01G379600 chr3D 96.639 119 4 0 3695 3813 152563585 152563703 1.520000e-46 198.0
45 TraesCS2B01G379600 chr3D 95.652 92 4 0 5584 5675 288550546 288550455 1.550000e-31 148.0
46 TraesCS2B01G379600 chr7A 91.156 147 11 2 1743 1888 125988620 125988765 1.520000e-46 198.0
47 TraesCS2B01G379600 chr7A 89.362 47 3 2 4059 4105 290923723 290923767 2.700000e-04 58.4
48 TraesCS2B01G379600 chr7A 90.698 43 2 2 4064 4105 535930445 535930486 1.000000e-03 56.5
49 TraesCS2B01G379600 chr4A 93.396 106 5 2 5568 5672 690621660 690621556 9.290000e-34 156.0
50 TraesCS2B01G379600 chr4A 98.305 59 1 0 3755 3813 6268886 6268828 3.410000e-18 104.0
51 TraesCS2B01G379600 chr4A 92.500 40 3 0 4066 4105 41115802 41115841 2.700000e-04 58.4
52 TraesCS2B01G379600 chr6D 94.792 96 5 0 5578 5673 296196911 296197006 4.320000e-32 150.0
53 TraesCS2B01G379600 chr5A 88.793 116 10 3 5585 5697 35260309 35260194 9.360000e-29 139.0
54 TraesCS2B01G379600 chr7B 92.208 77 4 2 1737 1812 15369165 15369240 2.640000e-19 108.0
55 TraesCS2B01G379600 chr5D 89.744 78 5 3 1737 1812 35145497 35145573 5.710000e-16 97.1
56 TraesCS2B01G379600 chr6A 100.000 35 0 0 4071 4105 599293344 599293378 1.610000e-06 65.8
57 TraesCS2B01G379600 chr4B 97.368 38 1 0 4068 4105 242718847 242718810 1.610000e-06 65.8
58 TraesCS2B01G379600 chr1D 89.362 47 4 1 4060 4105 427594141 427594095 2.700000e-04 58.4
59 TraesCS2B01G379600 chr3A 92.500 40 1 2 4067 4105 643328274 643328236 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G379600 chr2B 542915674 542922592 6918 True 12778.000000 12778 100.000000 1 6919 1 chr2B.!!$R1 6918
1 TraesCS2B01G379600 chr2D 461092424 461094261 1837 True 1028.500000 1406 90.230500 4 1930 2 chr2D.!!$R2 1926
2 TraesCS2B01G379600 chr2D 461082110 461088016 5906 True 745.000000 2686 93.158625 1922 6898 8 chr2D.!!$R1 4976
3 TraesCS2B01G379600 chr2D 619538358 619541159 2801 True 213.000000 233 95.267500 1737 3813 2 chr2D.!!$R3 2076
4 TraesCS2B01G379600 chr2A 604859956 604866167 6211 True 675.416667 1892 92.610000 1 6314 12 chr2A.!!$R4 6313
5 TraesCS2B01G379600 chr2A 604842643 604843465 822 True 300.000000 496 89.016000 6327 6917 2 chr2A.!!$R3 590
6 TraesCS2B01G379600 chr3D 152560833 152563703 2870 False 218.500000 239 96.001500 1737 3813 2 chr3D.!!$F1 2076

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
982 1034 0.037590 AGCAACGGCAATTGGGTCTA 59.962 50.000 7.72 0.0 44.61 2.59 F
1450 1503 0.249657 GCATACTCTCCTTGAGGCGG 60.250 60.000 0.00 0.0 46.72 6.13 F
1453 1506 0.331954 TACTCTCCTTGAGGCGGTCT 59.668 55.000 0.00 0.0 46.72 3.85 F
1480 1533 0.535335 TGCATACGGTCCTCCAGTTC 59.465 55.000 0.00 0.0 0.00 3.01 F
2648 4126 0.977395 ACTCCCTCCGTCCTTGAAAG 59.023 55.000 0.00 0.0 0.00 2.62 F
2885 4363 0.977395 ACTCTTTCAAGGACGGAGGG 59.023 55.000 0.00 0.0 0.00 4.30 F
2887 4365 1.205893 CTCTTTCAAGGACGGAGGGAG 59.794 57.143 0.00 0.0 0.00 4.30 F
4360 7530 1.547675 CCCAGCCTGCTCCACTAAAAA 60.548 52.381 0.00 0.0 0.00 1.94 F
5556 8911 1.493022 ACAGCTACCCCTTTGTTCACA 59.507 47.619 0.00 0.0 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2629 4107 0.977395 CTTTCAAGGACGGAGGGAGT 59.023 55.0 0.00 0.0 0.00 3.85 R
2869 4347 0.977395 ACTCCCTCCGTCCTTGAAAG 59.023 55.0 0.00 0.0 0.00 2.62 R
2870 4348 2.314071 TACTCCCTCCGTCCTTGAAA 57.686 50.0 0.00 0.0 0.00 2.69 R
2871 4349 2.544844 ATACTCCCTCCGTCCTTGAA 57.455 50.0 0.00 0.0 0.00 2.69 R
3871 6063 0.319405 GCAAGGCAAAAGGTGAGCAT 59.681 50.0 0.00 0.0 0.00 3.79 R
4092 6284 0.321021 TGTTAAGTAAAGCGGGGCGA 59.679 50.0 0.00 0.0 0.00 5.54 R
4367 7537 0.471591 TCCAATTTTGCAGGCTGGGT 60.472 50.0 17.64 0.0 0.00 4.51 R
5873 9234 1.164041 CGTTGGCAGGTCGTTTCCTT 61.164 55.0 0.00 0.0 35.37 3.36 R
6692 10152 0.027586 GTCAAGAACCACACACGCAC 59.972 55.0 0.00 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 6.072175 CCCACGATTTTTGTTTCTGGATAAGA 60.072 38.462 0.00 0.00 0.00 2.10
61 62 6.633500 TTTTGTTTCTGGATAAGAGTGTGG 57.367 37.500 0.00 0.00 35.91 4.17
64 65 4.254492 GTTTCTGGATAAGAGTGTGGGTC 58.746 47.826 0.00 0.00 35.91 4.46
69 70 2.093447 GGATAAGAGTGTGGGTCTGTGG 60.093 54.545 0.00 0.00 0.00 4.17
71 72 0.759346 AAGAGTGTGGGTCTGTGGTC 59.241 55.000 0.00 0.00 0.00 4.02
77 78 2.038557 GTGTGGGTCTGTGGTCTGTTAT 59.961 50.000 0.00 0.00 0.00 1.89
103 104 1.429463 AGAAGAAACATCGTGGCGTC 58.571 50.000 0.00 0.00 0.00 5.19
162 163 2.852449 TGCCCTCTATTGGATTGGAGTT 59.148 45.455 0.00 0.00 0.00 3.01
164 165 3.748989 GCCCTCTATTGGATTGGAGTTCC 60.749 52.174 0.00 0.00 0.00 3.62
264 271 2.050442 GGAAACAAAGGCGCACGG 60.050 61.111 10.83 0.00 0.00 4.94
327 338 4.219725 GCAAAACTTCCTTACATTAGCCCA 59.780 41.667 0.00 0.00 0.00 5.36
551 578 1.748403 GTGACCTCTCAGTGCACCA 59.252 57.895 14.63 0.00 0.00 4.17
661 688 0.869730 TTTTAAAGAGGCACGCGTCC 59.130 50.000 9.86 14.42 0.00 4.79
693 720 2.187946 CATGCCCTGACCCGAGTC 59.812 66.667 0.00 0.00 43.83 3.36
727 761 3.142174 AGCAGACAGAGCCAAGTAAAAC 58.858 45.455 0.00 0.00 0.00 2.43
813 860 2.530701 GTGAGTCCTCCTCCTTCTTCA 58.469 52.381 0.00 0.00 39.65 3.02
973 1025 3.043713 CGAGAGCAGCAACGGCAA 61.044 61.111 0.00 0.00 44.61 4.52
975 1027 1.878775 GAGAGCAGCAACGGCAATT 59.121 52.632 0.00 0.00 44.61 2.32
978 1030 2.432972 GCAGCAACGGCAATTGGG 60.433 61.111 7.72 0.00 44.61 4.12
979 1031 3.050339 CAGCAACGGCAATTGGGT 58.950 55.556 7.72 0.00 44.61 4.51
980 1032 1.080569 CAGCAACGGCAATTGGGTC 60.081 57.895 7.72 0.00 44.61 4.46
981 1033 1.228552 AGCAACGGCAATTGGGTCT 60.229 52.632 7.72 0.00 44.61 3.85
982 1034 0.037590 AGCAACGGCAATTGGGTCTA 59.962 50.000 7.72 0.00 44.61 2.59
984 1036 0.808755 CAACGGCAATTGGGTCTACC 59.191 55.000 7.72 0.00 40.81 3.18
1009 1061 2.026449 GGCAGAGGGGATATGATCAAGG 60.026 54.545 0.00 0.00 0.00 3.61
1014 1066 5.046735 CAGAGGGGATATGATCAAGGTACAG 60.047 48.000 0.00 0.00 0.00 2.74
1071 1123 1.140804 GAGGAAGAGGCAGTCGCTC 59.859 63.158 0.00 0.00 38.60 5.03
1177 1229 2.084681 GGACTGCACCGTACGTTCG 61.085 63.158 15.21 7.68 0.00 3.95
1182 1234 2.807895 CACCGTACGTTCGCCCTG 60.808 66.667 15.21 0.00 0.00 4.45
1183 1235 3.297620 ACCGTACGTTCGCCCTGT 61.298 61.111 15.21 0.00 0.00 4.00
1246 1298 6.392354 TGGATGAAACATTCTGAATTTGCTC 58.608 36.000 0.00 0.00 0.00 4.26
1422 1475 1.988293 TTTGCACCTGAATTTCCGGA 58.012 45.000 13.16 0.00 0.00 5.14
1444 1497 2.548875 GCAGTCTGCATACTCTCCTTG 58.451 52.381 20.16 0.00 44.26 3.61
1445 1498 2.167281 GCAGTCTGCATACTCTCCTTGA 59.833 50.000 20.16 0.00 44.26 3.02
1446 1499 3.737663 GCAGTCTGCATACTCTCCTTGAG 60.738 52.174 20.16 0.00 44.26 3.02
1447 1500 3.030291 AGTCTGCATACTCTCCTTGAGG 58.970 50.000 0.00 0.00 46.72 3.86
1448 1501 1.759445 TCTGCATACTCTCCTTGAGGC 59.241 52.381 0.00 0.00 46.72 4.70
1449 1502 0.461548 TGCATACTCTCCTTGAGGCG 59.538 55.000 0.00 0.00 46.72 5.52
1450 1503 0.249657 GCATACTCTCCTTGAGGCGG 60.250 60.000 0.00 0.00 46.72 6.13
1451 1504 1.115467 CATACTCTCCTTGAGGCGGT 58.885 55.000 0.00 0.00 46.72 5.68
1452 1505 1.067821 CATACTCTCCTTGAGGCGGTC 59.932 57.143 0.00 0.00 46.72 4.79
1453 1506 0.331954 TACTCTCCTTGAGGCGGTCT 59.668 55.000 0.00 0.00 46.72 3.85
1454 1507 1.254284 ACTCTCCTTGAGGCGGTCTG 61.254 60.000 0.00 0.00 46.72 3.51
1455 1508 2.125350 CTCCTTGAGGCGGTCTGC 60.125 66.667 0.00 0.00 45.38 4.26
1464 1517 4.651585 GCGGTCTGCATTTTTGCA 57.348 50.000 0.00 0.23 45.45 4.08
1465 1518 3.126729 GCGGTCTGCATTTTTGCAT 57.873 47.368 0.53 0.00 44.47 3.96
1466 1519 2.276472 GCGGTCTGCATTTTTGCATA 57.724 45.000 0.53 0.00 44.47 3.14
1467 1520 1.919918 GCGGTCTGCATTTTTGCATAC 59.080 47.619 0.53 4.67 44.47 2.39
1468 1521 2.176369 CGGTCTGCATTTTTGCATACG 58.824 47.619 0.53 3.41 44.47 3.06
1469 1522 2.529151 GGTCTGCATTTTTGCATACGG 58.471 47.619 0.53 0.00 44.47 4.02
1470 1523 2.094752 GGTCTGCATTTTTGCATACGGT 60.095 45.455 0.53 0.00 44.47 4.83
1471 1524 3.171277 GTCTGCATTTTTGCATACGGTC 58.829 45.455 0.53 0.00 44.47 4.79
1472 1525 2.163412 TCTGCATTTTTGCATACGGTCC 59.837 45.455 0.53 0.00 44.47 4.46
1473 1526 2.164219 CTGCATTTTTGCATACGGTCCT 59.836 45.455 0.53 0.00 44.47 3.85
1474 1527 2.163412 TGCATTTTTGCATACGGTCCTC 59.837 45.455 0.00 0.00 40.23 3.71
1475 1528 2.479560 GCATTTTTGCATACGGTCCTCC 60.480 50.000 0.00 0.00 34.41 4.30
1476 1529 2.570415 TTTTTGCATACGGTCCTCCA 57.430 45.000 0.00 0.00 0.00 3.86
1477 1530 2.107950 TTTTGCATACGGTCCTCCAG 57.892 50.000 0.00 0.00 0.00 3.86
1478 1531 0.981183 TTTGCATACGGTCCTCCAGT 59.019 50.000 0.00 0.00 0.00 4.00
1479 1532 0.981183 TTGCATACGGTCCTCCAGTT 59.019 50.000 0.00 0.00 0.00 3.16
1480 1533 0.535335 TGCATACGGTCCTCCAGTTC 59.465 55.000 0.00 0.00 0.00 3.01
1481 1534 0.535335 GCATACGGTCCTCCAGTTCA 59.465 55.000 0.00 0.00 0.00 3.18
1482 1535 1.471676 GCATACGGTCCTCCAGTTCAG 60.472 57.143 0.00 0.00 0.00 3.02
1483 1536 1.825474 CATACGGTCCTCCAGTTCAGT 59.175 52.381 0.00 0.00 0.00 3.41
1484 1537 2.005370 TACGGTCCTCCAGTTCAGTT 57.995 50.000 0.00 0.00 0.00 3.16
1485 1538 1.129058 ACGGTCCTCCAGTTCAGTTT 58.871 50.000 0.00 0.00 0.00 2.66
1486 1539 1.070289 ACGGTCCTCCAGTTCAGTTTC 59.930 52.381 0.00 0.00 0.00 2.78
1487 1540 1.608283 CGGTCCTCCAGTTCAGTTTCC 60.608 57.143 0.00 0.00 0.00 3.13
1488 1541 1.420138 GGTCCTCCAGTTCAGTTTCCA 59.580 52.381 0.00 0.00 0.00 3.53
1489 1542 2.495084 GTCCTCCAGTTCAGTTTCCAC 58.505 52.381 0.00 0.00 0.00 4.02
1490 1543 2.123589 TCCTCCAGTTCAGTTTCCACA 58.876 47.619 0.00 0.00 0.00 4.17
1491 1544 2.104792 TCCTCCAGTTCAGTTTCCACAG 59.895 50.000 0.00 0.00 0.00 3.66
1496 1549 3.134458 CAGTTCAGTTTCCACAGTCCTC 58.866 50.000 0.00 0.00 0.00 3.71
1497 1550 2.135933 GTTCAGTTTCCACAGTCCTCG 58.864 52.381 0.00 0.00 0.00 4.63
1498 1551 1.410004 TCAGTTTCCACAGTCCTCGT 58.590 50.000 0.00 0.00 0.00 4.18
1509 1562 4.573201 CCACAGTCCTCGTCAAAACTAAAA 59.427 41.667 0.00 0.00 0.00 1.52
1512 1565 6.018262 CACAGTCCTCGTCAAAACTAAAATGA 60.018 38.462 0.00 0.00 0.00 2.57
1514 1567 7.876068 ACAGTCCTCGTCAAAACTAAAATGATA 59.124 33.333 0.00 0.00 0.00 2.15
1515 1568 8.169268 CAGTCCTCGTCAAAACTAAAATGATAC 58.831 37.037 0.00 0.00 0.00 2.24
1516 1569 7.063074 AGTCCTCGTCAAAACTAAAATGATACG 59.937 37.037 0.00 0.00 0.00 3.06
1517 1570 5.957796 CCTCGTCAAAACTAAAATGATACGC 59.042 40.000 0.00 0.00 0.00 4.42
1518 1571 6.401688 CCTCGTCAAAACTAAAATGATACGCA 60.402 38.462 0.00 0.00 0.00 5.24
1519 1572 7.067532 TCGTCAAAACTAAAATGATACGCAT 57.932 32.000 0.00 0.00 39.43 4.73
1521 1574 6.194508 CGTCAAAACTAAAATGATACGCATGG 59.805 38.462 0.00 0.00 37.28 3.66
1522 1575 6.472163 GTCAAAACTAAAATGATACGCATGGG 59.528 38.462 8.44 8.44 37.28 4.00
1523 1576 4.568152 AACTAAAATGATACGCATGGGC 57.432 40.909 10.10 0.00 37.28 5.36
1525 1578 3.951037 ACTAAAATGATACGCATGGGCAA 59.049 39.130 10.10 0.00 41.24 4.52
1527 1580 3.374220 AAATGATACGCATGGGCAATG 57.626 42.857 10.10 0.00 41.24 2.82
1529 1582 1.308047 TGATACGCATGGGCAATGAC 58.692 50.000 5.91 0.00 41.24 3.06
1540 1603 2.496871 TGGGCAATGACATCAATGAACC 59.503 45.455 1.01 3.29 0.00 3.62
1555 1618 3.768468 TGAACCGTTTGTGTTCCTTTC 57.232 42.857 0.00 0.00 41.08 2.62
1680 1743 1.143684 TGCTGGGCTCTCAAGTTTCTT 59.856 47.619 0.00 0.00 0.00 2.52
1790 1853 5.221130 GTCACTCAGTAAACAGTAGTCACC 58.779 45.833 0.00 0.00 0.00 4.02
1794 1857 5.834204 ACTCAGTAAACAGTAGTCACCTCTT 59.166 40.000 0.00 0.00 0.00 2.85
1795 1858 6.085555 TCAGTAAACAGTAGTCACCTCTTG 57.914 41.667 0.00 0.00 0.00 3.02
1796 1859 4.686554 CAGTAAACAGTAGTCACCTCTTGC 59.313 45.833 0.00 0.00 0.00 4.01
1805 1869 1.071987 CACCTCTTGCCTCACTGCA 59.928 57.895 0.00 0.00 40.07 4.41
2071 2831 6.894339 AGAACAAATACCCAAACTAACCTG 57.106 37.500 0.00 0.00 0.00 4.00
2255 3085 7.385205 ACATTCGGTATAGTCATTTCACTATGC 59.615 37.037 3.79 2.52 39.49 3.14
2288 3119 4.390129 AACCCTAGTCAGAGACTCAGAA 57.610 45.455 5.02 0.00 42.40 3.02
2339 3575 3.696051 CCAATGGTAGTGCAGCAATTAGT 59.304 43.478 0.00 0.00 38.36 2.24
2344 3580 5.116180 TGGTAGTGCAGCAATTAGTATGTC 58.884 41.667 0.00 0.00 0.00 3.06
2361 3597 6.594744 AGTATGTCTGCAATGATACATTGGA 58.405 36.000 20.76 18.11 34.54 3.53
2447 3716 5.007724 CCGGCAACTTACAGATCCTTTATTC 59.992 44.000 0.00 0.00 0.00 1.75
2455 3728 8.947115 ACTTACAGATCCTTTATTCGGAAAAAG 58.053 33.333 13.65 13.65 33.55 2.27
2612 4090 1.164041 CGAATGGGTGCCGGGTAATC 61.164 60.000 2.18 0.00 0.00 1.75
2628 4106 7.416326 GCCGGGTAATCTTAATGATTCTTGTTT 60.416 37.037 2.18 0.00 43.69 2.83
2629 4107 9.116067 CCGGGTAATCTTAATGATTCTTGTTTA 57.884 33.333 0.00 0.00 43.69 2.01
2630 4108 9.931210 CGGGTAATCTTAATGATTCTTGTTTAC 57.069 33.333 4.17 0.00 43.69 2.01
2635 4113 9.981460 AATCTTAATGATTCTTGTTTACTCCCT 57.019 29.630 0.00 0.00 41.17 4.20
2636 4114 9.620259 ATCTTAATGATTCTTGTTTACTCCCTC 57.380 33.333 0.00 0.00 29.59 4.30
2637 4115 8.047310 TCTTAATGATTCTTGTTTACTCCCTCC 58.953 37.037 0.00 0.00 0.00 4.30
2638 4116 4.202245 TGATTCTTGTTTACTCCCTCCG 57.798 45.455 0.00 0.00 0.00 4.63
2639 4117 3.581332 TGATTCTTGTTTACTCCCTCCGT 59.419 43.478 0.00 0.00 0.00 4.69
2640 4118 3.672767 TTCTTGTTTACTCCCTCCGTC 57.327 47.619 0.00 0.00 0.00 4.79
2641 4119 1.897802 TCTTGTTTACTCCCTCCGTCC 59.102 52.381 0.00 0.00 0.00 4.79
2642 4120 1.900486 CTTGTTTACTCCCTCCGTCCT 59.100 52.381 0.00 0.00 0.00 3.85
2643 4121 2.019807 TGTTTACTCCCTCCGTCCTT 57.980 50.000 0.00 0.00 0.00 3.36
2644 4122 1.621814 TGTTTACTCCCTCCGTCCTTG 59.378 52.381 0.00 0.00 0.00 3.61
2645 4123 1.897802 GTTTACTCCCTCCGTCCTTGA 59.102 52.381 0.00 0.00 0.00 3.02
2646 4124 2.301009 GTTTACTCCCTCCGTCCTTGAA 59.699 50.000 0.00 0.00 0.00 2.69
2647 4125 2.314071 TACTCCCTCCGTCCTTGAAA 57.686 50.000 0.00 0.00 0.00 2.69
2648 4126 0.977395 ACTCCCTCCGTCCTTGAAAG 59.023 55.000 0.00 0.00 0.00 2.62
2649 4127 1.267121 CTCCCTCCGTCCTTGAAAGA 58.733 55.000 0.00 0.00 0.00 2.52
2650 4128 1.205893 CTCCCTCCGTCCTTGAAAGAG 59.794 57.143 0.00 0.00 0.00 2.85
2651 4129 0.977395 CCCTCCGTCCTTGAAAGAGT 59.023 55.000 0.00 0.00 0.00 3.24
2652 4130 1.338200 CCCTCCGTCCTTGAAAGAGTG 60.338 57.143 0.00 0.00 0.00 3.51
2653 4131 1.344763 CCTCCGTCCTTGAAAGAGTGT 59.655 52.381 0.00 0.00 0.00 3.55
2654 4132 2.561419 CCTCCGTCCTTGAAAGAGTGTA 59.439 50.000 0.00 0.00 0.00 2.90
2655 4133 3.576648 CTCCGTCCTTGAAAGAGTGTAC 58.423 50.000 0.00 0.00 0.00 2.90
2656 4134 3.228453 TCCGTCCTTGAAAGAGTGTACT 58.772 45.455 0.00 0.00 0.00 2.73
2657 4135 3.640029 TCCGTCCTTGAAAGAGTGTACTT 59.360 43.478 0.00 0.00 0.00 2.24
2658 4136 3.988517 CCGTCCTTGAAAGAGTGTACTTC 59.011 47.826 0.00 0.00 0.00 3.01
2659 4137 3.988517 CGTCCTTGAAAGAGTGTACTTCC 59.011 47.826 0.00 0.00 0.00 3.46
2660 4138 4.500887 CGTCCTTGAAAGAGTGTACTTCCA 60.501 45.833 0.00 0.00 0.00 3.53
2661 4139 5.365619 GTCCTTGAAAGAGTGTACTTCCAA 58.634 41.667 0.00 0.00 0.00 3.53
2662 4140 5.236695 GTCCTTGAAAGAGTGTACTTCCAAC 59.763 44.000 0.00 0.00 0.00 3.77
2663 4141 5.130477 TCCTTGAAAGAGTGTACTTCCAACT 59.870 40.000 0.00 0.00 0.00 3.16
2664 4142 5.823045 CCTTGAAAGAGTGTACTTCCAACTT 59.177 40.000 0.00 0.00 0.00 2.66
2665 4143 6.318900 CCTTGAAAGAGTGTACTTCCAACTTT 59.681 38.462 0.00 0.00 0.00 2.66
2666 4144 6.677781 TGAAAGAGTGTACTTCCAACTTTG 57.322 37.500 0.00 0.00 0.00 2.77
2667 4145 6.177610 TGAAAGAGTGTACTTCCAACTTTGT 58.822 36.000 0.00 0.00 0.00 2.83
2668 4146 6.657541 TGAAAGAGTGTACTTCCAACTTTGTT 59.342 34.615 0.00 0.00 0.00 2.83
2669 4147 6.436843 AAGAGTGTACTTCCAACTTTGTTG 57.563 37.500 3.69 3.69 0.00 3.33
2670 4148 4.881850 AGAGTGTACTTCCAACTTTGTTGG 59.118 41.667 19.97 19.97 40.87 3.77
2671 4149 4.850680 AGTGTACTTCCAACTTTGTTGGA 58.149 39.130 23.38 23.38 46.08 3.53
2679 4157 5.930837 TCCAACTTTGTTGGAAAGTCATT 57.069 34.783 24.52 0.00 44.90 2.57
2680 4158 6.293004 TCCAACTTTGTTGGAAAGTCATTT 57.707 33.333 24.52 0.00 44.90 2.32
2681 4159 6.706295 TCCAACTTTGTTGGAAAGTCATTTT 58.294 32.000 24.52 0.00 44.90 1.82
2682 4160 7.164803 TCCAACTTTGTTGGAAAGTCATTTTT 58.835 30.769 24.52 0.00 44.90 1.94
2729 4207 8.532186 ACAATAATAGACCAACATTTATGCCA 57.468 30.769 0.00 0.00 0.00 4.92
2730 4208 9.146586 ACAATAATAGACCAACATTTATGCCAT 57.853 29.630 0.00 0.00 0.00 4.40
2731 4209 9.630098 CAATAATAGACCAACATTTATGCCATC 57.370 33.333 0.00 0.00 0.00 3.51
2732 4210 8.938801 ATAATAGACCAACATTTATGCCATCA 57.061 30.769 0.00 0.00 0.00 3.07
2733 4211 7.658525 AATAGACCAACATTTATGCCATCAA 57.341 32.000 0.00 0.00 0.00 2.57
2734 4212 5.999205 AGACCAACATTTATGCCATCAAA 57.001 34.783 0.00 0.00 0.00 2.69
2735 4213 6.549433 AGACCAACATTTATGCCATCAAAT 57.451 33.333 0.00 0.00 0.00 2.32
2736 4214 6.949715 AGACCAACATTTATGCCATCAAATT 58.050 32.000 0.00 0.00 0.00 1.82
2737 4215 8.076910 AGACCAACATTTATGCCATCAAATTA 57.923 30.769 0.00 0.00 0.00 1.40
2738 4216 8.199449 AGACCAACATTTATGCCATCAAATTAG 58.801 33.333 0.00 0.00 0.00 1.73
2739 4217 7.850193 ACCAACATTTATGCCATCAAATTAGT 58.150 30.769 0.00 0.00 0.00 2.24
2740 4218 8.976353 ACCAACATTTATGCCATCAAATTAGTA 58.024 29.630 0.00 0.00 0.00 1.82
2741 4219 9.467258 CCAACATTTATGCCATCAAATTAGTAG 57.533 33.333 0.00 0.00 0.00 2.57
2742 4220 8.971321 CAACATTTATGCCATCAAATTAGTAGC 58.029 33.333 0.00 0.00 0.00 3.58
2743 4221 8.236585 ACATTTATGCCATCAAATTAGTAGCA 57.763 30.769 0.00 0.00 0.00 3.49
2744 4222 8.863086 ACATTTATGCCATCAAATTAGTAGCAT 58.137 29.630 0.00 0.00 41.89 3.79
2745 4223 9.701098 CATTTATGCCATCAAATTAGTAGCATT 57.299 29.630 0.00 0.00 39.89 3.56
2748 4226 9.791801 TTATGCCATCAAATTAGTAGCATTAGA 57.208 29.630 0.00 0.00 39.89 2.10
2749 4227 8.874744 ATGCCATCAAATTAGTAGCATTAGAT 57.125 30.769 0.00 0.00 36.10 1.98
2750 4228 8.696043 TGCCATCAAATTAGTAGCATTAGATT 57.304 30.769 0.00 0.00 0.00 2.40
2751 4229 8.786898 TGCCATCAAATTAGTAGCATTAGATTC 58.213 33.333 0.00 0.00 0.00 2.52
2752 4230 8.786898 GCCATCAAATTAGTAGCATTAGATTCA 58.213 33.333 0.00 0.00 0.00 2.57
2793 4271 9.990360 TTCGCTATATACCTATTTGATTTCACA 57.010 29.630 0.00 0.00 0.00 3.58
2794 4272 9.990360 TCGCTATATACCTATTTGATTTCACAA 57.010 29.630 0.00 0.00 0.00 3.33
2817 4295 7.493743 AAGCATTGACATATTTTTGCACAAA 57.506 28.000 0.00 0.00 32.66 2.83
2818 4296 6.890558 AGCATTGACATATTTTTGCACAAAC 58.109 32.000 0.00 0.00 32.66 2.93
2819 4297 6.707161 AGCATTGACATATTTTTGCACAAACT 59.293 30.769 0.00 0.00 32.66 2.66
2820 4298 7.011189 GCATTGACATATTTTTGCACAAACTC 58.989 34.615 0.00 0.00 0.00 3.01
2821 4299 6.746104 TTGACATATTTTTGCACAAACTCG 57.254 33.333 0.00 0.00 0.00 4.18
2822 4300 5.218885 TGACATATTTTTGCACAAACTCGG 58.781 37.500 0.00 0.00 0.00 4.63
2823 4301 5.195001 ACATATTTTTGCACAAACTCGGT 57.805 34.783 0.00 0.00 0.00 4.69
2824 4302 5.219633 ACATATTTTTGCACAAACTCGGTC 58.780 37.500 0.00 0.00 0.00 4.79
2825 4303 3.791973 ATTTTTGCACAAACTCGGTCA 57.208 38.095 0.00 0.00 0.00 4.02
2826 4304 3.577649 TTTTTGCACAAACTCGGTCAA 57.422 38.095 0.00 0.00 0.00 3.18
2827 4305 3.577649 TTTTGCACAAACTCGGTCAAA 57.422 38.095 0.00 0.00 0.00 2.69
2828 4306 2.553079 TTGCACAAACTCGGTCAAAC 57.447 45.000 0.00 0.00 0.00 2.93
2829 4307 1.745232 TGCACAAACTCGGTCAAACT 58.255 45.000 0.00 0.00 0.00 2.66
2830 4308 2.088423 TGCACAAACTCGGTCAAACTT 58.912 42.857 0.00 0.00 0.00 2.66
2831 4309 2.490115 TGCACAAACTCGGTCAAACTTT 59.510 40.909 0.00 0.00 0.00 2.66
2832 4310 2.851824 GCACAAACTCGGTCAAACTTTG 59.148 45.455 0.00 0.00 0.00 2.77
2833 4311 3.426963 GCACAAACTCGGTCAAACTTTGA 60.427 43.478 0.00 0.00 37.33 2.69
2834 4312 4.342772 CACAAACTCGGTCAAACTTTGAG 58.657 43.478 4.36 0.00 41.01 3.02
2835 4313 4.094294 CACAAACTCGGTCAAACTTTGAGA 59.906 41.667 4.36 0.00 41.01 3.27
2836 4314 4.881850 ACAAACTCGGTCAAACTTTGAGAT 59.118 37.500 4.36 0.00 41.01 2.75
2837 4315 6.018262 CACAAACTCGGTCAAACTTTGAGATA 60.018 38.462 4.36 0.00 41.01 1.98
2838 4316 6.202954 ACAAACTCGGTCAAACTTTGAGATAG 59.797 38.462 4.36 5.24 41.01 2.08
2839 4317 5.470047 ACTCGGTCAAACTTTGAGATAGT 57.530 39.130 4.36 5.79 41.01 2.12
2840 4318 5.855045 ACTCGGTCAAACTTTGAGATAGTT 58.145 37.500 4.36 0.00 41.01 2.24
2841 4319 5.696724 ACTCGGTCAAACTTTGAGATAGTTG 59.303 40.000 4.36 0.00 41.01 3.16
2842 4320 5.849510 TCGGTCAAACTTTGAGATAGTTGA 58.150 37.500 4.36 0.00 41.01 3.18
2843 4321 5.694910 TCGGTCAAACTTTGAGATAGTTGAC 59.305 40.000 4.36 5.92 41.01 3.18
2844 4322 5.107065 CGGTCAAACTTTGAGATAGTTGACC 60.107 44.000 18.91 18.91 42.50 4.02
2845 4323 5.181433 GGTCAAACTTTGAGATAGTTGACCC 59.819 44.000 18.36 5.11 41.55 4.46
2846 4324 5.998363 GTCAAACTTTGAGATAGTTGACCCT 59.002 40.000 4.36 0.00 41.01 4.34
2847 4325 6.147985 GTCAAACTTTGAGATAGTTGACCCTC 59.852 42.308 4.36 0.00 41.01 4.30
2848 4326 4.828072 ACTTTGAGATAGTTGACCCTCC 57.172 45.455 0.00 0.00 0.00 4.30
2849 4327 4.168101 ACTTTGAGATAGTTGACCCTCCA 58.832 43.478 0.00 0.00 0.00 3.86
2850 4328 4.597507 ACTTTGAGATAGTTGACCCTCCAA 59.402 41.667 0.00 0.00 0.00 3.53
2851 4329 4.553330 TTGAGATAGTTGACCCTCCAAC 57.447 45.455 0.00 0.00 44.92 3.77
2852 4330 3.516586 TGAGATAGTTGACCCTCCAACA 58.483 45.455 9.09 0.00 46.48 3.33
2853 4331 3.907474 TGAGATAGTTGACCCTCCAACAA 59.093 43.478 9.09 0.00 46.48 2.83
2854 4332 4.349636 TGAGATAGTTGACCCTCCAACAAA 59.650 41.667 9.09 0.00 46.48 2.83
2855 4333 4.911390 AGATAGTTGACCCTCCAACAAAG 58.089 43.478 9.09 0.00 46.48 2.77
2856 4334 4.351111 AGATAGTTGACCCTCCAACAAAGT 59.649 41.667 9.09 0.00 46.48 2.66
2857 4335 3.382083 AGTTGACCCTCCAACAAAGTT 57.618 42.857 9.09 0.00 46.48 2.66
2858 4336 3.023832 AGTTGACCCTCCAACAAAGTTG 58.976 45.455 9.09 3.00 46.48 3.16
2859 4337 2.065899 TGACCCTCCAACAAAGTTGG 57.934 50.000 20.09 20.09 40.87 3.77
2860 4338 1.566703 TGACCCTCCAACAAAGTTGGA 59.433 47.619 25.17 25.17 45.61 3.53
2861 4339 2.024846 TGACCCTCCAACAAAGTTGGAA 60.025 45.455 26.25 12.88 46.85 3.53
2862 4340 2.623416 GACCCTCCAACAAAGTTGGAAG 59.377 50.000 26.25 21.51 46.85 3.46
2863 4341 2.024369 ACCCTCCAACAAAGTTGGAAGT 60.024 45.455 26.25 22.95 46.85 3.01
2864 4342 3.203487 ACCCTCCAACAAAGTTGGAAGTA 59.797 43.478 26.25 9.67 46.85 2.24
2865 4343 3.568430 CCCTCCAACAAAGTTGGAAGTAC 59.432 47.826 26.25 0.00 46.85 2.73
2866 4344 4.204012 CCTCCAACAAAGTTGGAAGTACA 58.796 43.478 26.25 8.75 46.85 2.90
2867 4345 4.036380 CCTCCAACAAAGTTGGAAGTACAC 59.964 45.833 26.25 0.00 46.85 2.90
2868 4346 4.850680 TCCAACAAAGTTGGAAGTACACT 58.149 39.130 24.83 0.00 44.90 3.55
2869 4347 4.879545 TCCAACAAAGTTGGAAGTACACTC 59.120 41.667 24.83 0.00 44.90 3.51
2870 4348 4.881850 CCAACAAAGTTGGAAGTACACTCT 59.118 41.667 21.24 0.00 42.06 3.24
2871 4349 5.357032 CCAACAAAGTTGGAAGTACACTCTT 59.643 40.000 21.24 0.00 42.06 2.85
2872 4350 6.127730 CCAACAAAGTTGGAAGTACACTCTTT 60.128 38.462 21.24 0.00 42.06 2.52
2873 4351 6.679327 ACAAAGTTGGAAGTACACTCTTTC 57.321 37.500 0.00 0.00 0.00 2.62
2874 4352 6.177610 ACAAAGTTGGAAGTACACTCTTTCA 58.822 36.000 0.00 0.00 31.87 2.69
2875 4353 6.657541 ACAAAGTTGGAAGTACACTCTTTCAA 59.342 34.615 0.00 0.00 39.65 2.69
2876 4354 6.927294 AAGTTGGAAGTACACTCTTTCAAG 57.073 37.500 0.00 0.00 41.68 3.02
2877 4355 5.368989 AGTTGGAAGTACACTCTTTCAAGG 58.631 41.667 0.00 0.00 41.68 3.61
2878 4356 5.130477 AGTTGGAAGTACACTCTTTCAAGGA 59.870 40.000 0.00 0.00 41.68 3.36
2879 4357 4.957296 TGGAAGTACACTCTTTCAAGGAC 58.043 43.478 0.00 0.00 30.93 3.85
2880 4358 3.988517 GGAAGTACACTCTTTCAAGGACG 59.011 47.826 0.00 0.00 0.00 4.79
2881 4359 3.662247 AGTACACTCTTTCAAGGACGG 57.338 47.619 0.00 0.00 0.00 4.79
2882 4360 3.228453 AGTACACTCTTTCAAGGACGGA 58.772 45.455 0.00 0.00 0.00 4.69
2883 4361 2.821991 ACACTCTTTCAAGGACGGAG 57.178 50.000 0.00 0.00 0.00 4.63
2884 4362 1.344763 ACACTCTTTCAAGGACGGAGG 59.655 52.381 0.00 0.00 0.00 4.30
2885 4363 0.977395 ACTCTTTCAAGGACGGAGGG 59.023 55.000 0.00 0.00 0.00 4.30
2886 4364 1.267121 CTCTTTCAAGGACGGAGGGA 58.733 55.000 0.00 0.00 0.00 4.20
2887 4365 1.205893 CTCTTTCAAGGACGGAGGGAG 59.794 57.143 0.00 0.00 0.00 4.30
3150 5230 2.880890 GCTGTGTTCTGGTGTCTCAATT 59.119 45.455 0.00 0.00 0.00 2.32
3159 5239 4.988540 TCTGGTGTCTCAATTACTTCAACG 59.011 41.667 0.00 0.00 0.00 4.10
3186 5266 5.719173 TGTTAAAACTATTTCAGGCCATGC 58.281 37.500 5.01 0.00 0.00 4.06
3275 5355 1.767759 CCTCATTTGCCGGAATCCTT 58.232 50.000 5.05 0.00 0.00 3.36
3457 5537 3.134081 AGTGATACAGTATTCAACCGGGG 59.866 47.826 6.32 0.00 0.00 5.73
3463 5543 3.007635 CAGTATTCAACCGGGGAACTTC 58.992 50.000 6.32 4.01 0.00 3.01
3472 5552 4.376225 ACCGGGGAACTTCTTAATTGAA 57.624 40.909 6.32 0.00 0.00 2.69
3474 5554 4.521639 ACCGGGGAACTTCTTAATTGAAAC 59.478 41.667 6.32 0.00 0.00 2.78
3498 5578 7.205297 ACAAATGTTGACAAAAGAGAGGATTG 58.795 34.615 0.00 0.00 0.00 2.67
3502 5588 6.537355 TGTTGACAAAAGAGAGGATTGAGAT 58.463 36.000 0.00 0.00 0.00 2.75
3506 5592 8.783833 TGACAAAAGAGAGGATTGAGATAAAG 57.216 34.615 0.00 0.00 0.00 1.85
3589 5675 8.358582 AGGAGCAGAAATAAGTTGAAATGATT 57.641 30.769 0.00 0.00 0.00 2.57
3604 5690 8.785946 GTTGAAATGATTGATTTTGGGAAATGT 58.214 29.630 0.00 0.00 35.65 2.71
3858 6050 3.942748 GCACCTCCATGTTTAACCGATAA 59.057 43.478 0.00 0.00 0.00 1.75
3871 6063 6.939132 TTAACCGATAACCAAAACTGTTCA 57.061 33.333 0.00 0.00 0.00 3.18
3879 6071 2.362077 ACCAAAACTGTTCATGCTCACC 59.638 45.455 0.00 0.00 0.00 4.02
3901 6093 2.843401 TTGCCTTGCATTGCTTCAAT 57.157 40.000 10.49 0.00 38.76 2.57
3999 6191 4.973168 TGGGCTCATATATTGTGTTCCTC 58.027 43.478 0.00 0.00 0.00 3.71
4025 6217 3.262420 GGTCTGCACTACACAGGTATTG 58.738 50.000 0.00 0.00 35.78 1.90
4073 6265 7.156876 TCATTTGCCCTTCTACTTAACATTG 57.843 36.000 0.00 0.00 0.00 2.82
4075 6267 4.027674 TGCCCTTCTACTTAACATTGCA 57.972 40.909 0.00 0.00 0.00 4.08
4076 6268 4.599041 TGCCCTTCTACTTAACATTGCAT 58.401 39.130 0.00 0.00 0.00 3.96
4080 6272 6.459710 GCCCTTCTACTTAACATTGCATTACC 60.460 42.308 0.00 0.00 0.00 2.85
4081 6273 6.238374 CCCTTCTACTTAACATTGCATTACCG 60.238 42.308 0.00 0.00 0.00 4.02
4082 6274 6.537301 CCTTCTACTTAACATTGCATTACCGA 59.463 38.462 0.00 0.00 0.00 4.69
4083 6275 7.065324 CCTTCTACTTAACATTGCATTACCGAA 59.935 37.037 0.00 0.00 0.00 4.30
4084 6276 7.908827 TCTACTTAACATTGCATTACCGAAA 57.091 32.000 0.00 0.00 0.00 3.46
4085 6277 8.325421 TCTACTTAACATTGCATTACCGAAAA 57.675 30.769 0.00 0.00 0.00 2.29
4086 6278 8.784994 TCTACTTAACATTGCATTACCGAAAAA 58.215 29.630 0.00 0.00 0.00 1.94
4087 6279 7.867445 ACTTAACATTGCATTACCGAAAAAG 57.133 32.000 0.00 0.00 0.00 2.27
4088 6280 6.866248 ACTTAACATTGCATTACCGAAAAAGG 59.134 34.615 0.00 0.00 37.30 3.11
4089 6281 3.584834 ACATTGCATTACCGAAAAAGGC 58.415 40.909 0.00 0.00 34.38 4.35
4090 6282 3.258123 ACATTGCATTACCGAAAAAGGCT 59.742 39.130 0.00 0.00 34.84 4.58
4091 6283 4.244862 CATTGCATTACCGAAAAAGGCTT 58.755 39.130 0.00 0.00 34.84 4.35
4092 6284 4.329462 TTGCATTACCGAAAAAGGCTTT 57.671 36.364 6.68 6.68 34.84 3.51
4093 6285 3.908213 TGCATTACCGAAAAAGGCTTTC 58.092 40.909 13.76 0.41 34.84 2.62
4095 6287 2.691984 TTACCGAAAAAGGCTTTCGC 57.308 45.000 13.76 7.41 46.89 4.70
4120 7288 5.062058 CCCGCTTTACTTAACATTGCATTTG 59.938 40.000 0.00 0.00 0.00 2.32
4123 7291 5.444481 GCTTTACTTAACATTGCATTTGCGG 60.444 40.000 0.00 0.00 45.83 5.69
4135 7303 2.283351 GCATTTGCGGCTCATTTTCATC 59.717 45.455 0.00 0.00 0.00 2.92
4232 7400 9.914834 TGGGCTACTATAATTGTAAGTGAAAAT 57.085 29.630 0.00 0.00 0.00 1.82
4268 7436 5.746990 ACTATGACCTAGTTGCACTCTTT 57.253 39.130 0.00 0.00 37.39 2.52
4273 7441 2.039084 ACCTAGTTGCACTCTTTGGAGG 59.961 50.000 12.87 8.79 43.46 4.30
4278 7446 5.499004 AGTTGCACTCTTTGGAGGTTATA 57.501 39.130 0.00 0.00 43.46 0.98
4342 7510 4.335416 TGGTGTCAAGATTGAAGATTCCC 58.665 43.478 0.00 0.00 39.21 3.97
4360 7530 1.547675 CCCAGCCTGCTCCACTAAAAA 60.548 52.381 0.00 0.00 0.00 1.94
4382 7552 2.834638 AGATACCCAGCCTGCAAAAT 57.165 45.000 0.00 0.00 0.00 1.82
4384 7554 2.762327 AGATACCCAGCCTGCAAAATTG 59.238 45.455 0.00 0.00 0.00 2.32
4430 7631 7.987458 TGAACTAATGAGTGGATCCTATTTGTC 59.013 37.037 14.23 9.51 35.52 3.18
4470 7671 2.500229 CCACAACTATGTCGGTGGTTT 58.500 47.619 0.00 0.00 44.47 3.27
4606 7811 3.407424 TTCTGGATGGGCATATCTTCG 57.593 47.619 1.79 0.00 0.00 3.79
4682 7889 5.449588 GCTTTGCTAGAGCTTCATTATTGCA 60.450 40.000 2.72 0.00 42.66 4.08
4700 7907 2.364647 TGCAATTTGCTCCATTGTGTCA 59.635 40.909 21.19 0.00 45.31 3.58
4722 7929 3.941483 AGCCACATTTTCTACTGGAATCG 59.059 43.478 0.00 0.00 33.53 3.34
4949 8227 8.352942 GTTGTTCCAAGAATCAGAATTACAGTT 58.647 33.333 0.00 0.00 0.00 3.16
5037 8348 9.725019 TGTTATTTAACACTGTCATGAATCTCT 57.275 29.630 0.00 0.00 40.93 3.10
5041 8352 8.675705 TTTAACACTGTCATGAATCTCTTCAA 57.324 30.769 0.00 0.00 44.29 2.69
5048 8359 5.123344 TGTCATGAATCTCTTCAATGCTGTG 59.877 40.000 0.00 0.00 44.29 3.66
5232 8544 8.706322 ACCATCCAATAACAAGAAAGTAAGTT 57.294 30.769 0.00 0.00 0.00 2.66
5241 8553 5.591099 ACAAGAAAGTAAGTTGCATTGTGG 58.409 37.500 0.00 0.00 0.00 4.17
5253 8565 2.660189 CATTGTGGAGAAATGCACCC 57.340 50.000 0.00 0.00 0.00 4.61
5295 8647 5.007921 TGACAACATGCTTAATCATCGATGG 59.992 40.000 24.61 9.70 0.00 3.51
5352 8704 3.868661 CGTACTGCTACATTGCCACATTA 59.131 43.478 0.00 0.00 0.00 1.90
5460 8813 4.289238 TGAATGAATGGCTGGCATTTTT 57.711 36.364 27.15 22.54 32.80 1.94
5482 8835 4.801891 TCATATACGGTAAGTCGCCATTC 58.198 43.478 0.00 0.00 0.00 2.67
5483 8836 4.521639 TCATATACGGTAAGTCGCCATTCT 59.478 41.667 0.00 0.00 0.00 2.40
5548 8903 3.222603 CTTCACAAAACAGCTACCCCTT 58.777 45.455 0.00 0.00 0.00 3.95
5556 8911 1.493022 ACAGCTACCCCTTTGTTCACA 59.507 47.619 0.00 0.00 0.00 3.58
5575 8930 7.438160 TGTTCACATTCAGTTTCAGTACACTAG 59.562 37.037 0.00 0.00 0.00 2.57
5611 8966 5.640732 AGTGTGTTTGTTCACTCATTTCAC 58.359 37.500 0.00 0.00 40.28 3.18
5685 9040 7.569240 ACAGAGGGAGTAATTCTAAAGAATGG 58.431 38.462 5.99 0.00 43.41 3.16
5800 9161 1.641577 GACATGGTCCGAGTTAGCAC 58.358 55.000 0.00 0.00 0.00 4.40
5803 9164 2.165845 ACATGGTCCGAGTTAGCACTAC 59.834 50.000 0.00 0.00 31.22 2.73
5823 9184 6.600246 CTACTGCTGTAGTAATACTGACGA 57.400 41.667 19.58 0.00 41.20 4.20
5867 9228 3.222287 GAGACTGATCTCCCCAGCT 57.778 57.895 0.00 0.00 45.06 4.24
5873 9234 0.041684 TGATCTCCCCAGCTCTGTCA 59.958 55.000 0.00 0.00 0.00 3.58
5881 9242 1.151668 CCAGCTCTGTCAAGGAAACG 58.848 55.000 0.00 0.00 0.00 3.60
6122 9515 1.611673 CCAACTGCTCCCGAAGTCAAT 60.612 52.381 0.00 0.00 0.00 2.57
6285 9723 3.136123 CATGGGCTCCTTGTGCGG 61.136 66.667 0.00 0.00 0.00 5.69
6315 9753 3.072768 GCCCATCTCAAGATCTTCCATCT 59.927 47.826 4.57 0.00 31.21 2.90
6361 9800 0.392998 ATGCAAAGCACCGGGTAGAG 60.393 55.000 6.32 0.00 43.04 2.43
6367 9806 0.684805 AGCACCGGGTAGAGAAGAGG 60.685 60.000 6.32 0.00 0.00 3.69
6370 9809 1.457831 CCGGGTAGAGAAGAGGGGG 60.458 68.421 0.00 0.00 0.00 5.40
6379 9818 2.843113 AGAGAAGAGGGGGAAATCAGTG 59.157 50.000 0.00 0.00 0.00 3.66
6383 9822 0.106967 GAGGGGGAAATCAGTGGAGC 60.107 60.000 0.00 0.00 0.00 4.70
6468 9924 1.376812 CGCCCTAGTTTCCACCACC 60.377 63.158 0.00 0.00 0.00 4.61
6600 10056 2.874014 TCGAGATGAGATGAGATGGCT 58.126 47.619 0.00 0.00 0.00 4.75
6618 10074 2.146342 GCTGTACCCATCAATCCATCG 58.854 52.381 0.00 0.00 0.00 3.84
6626 10082 1.388093 CATCAATCCATCGTCGATCGC 59.612 52.381 11.09 4.79 39.67 4.58
6632 10088 0.586802 CCATCGTCGATCGCTAGTCA 59.413 55.000 11.09 0.00 39.67 3.41
6645 10105 2.468831 GCTAGTCAAGAAGGATCGCAG 58.531 52.381 0.00 0.00 0.00 5.18
6646 10106 2.099921 GCTAGTCAAGAAGGATCGCAGA 59.900 50.000 0.00 0.00 45.75 4.26
6647 10107 3.243704 GCTAGTCAAGAAGGATCGCAGAT 60.244 47.826 0.00 0.00 45.12 2.90
6648 10108 4.022762 GCTAGTCAAGAAGGATCGCAGATA 60.023 45.833 0.00 0.00 45.12 1.98
6664 10124 2.234661 CAGATAGATAATGGGCGGCTCA 59.765 50.000 4.36 4.36 0.00 4.26
6689 10149 2.483793 CGTGAAGCAAGCAACAACG 58.516 52.632 0.00 0.00 0.00 4.10
6690 10150 0.929824 CGTGAAGCAAGCAACAACGG 60.930 55.000 0.00 0.00 0.00 4.44
6691 10151 0.100503 GTGAAGCAAGCAACAACGGT 59.899 50.000 0.00 0.00 0.00 4.83
6692 10152 0.100325 TGAAGCAAGCAACAACGGTG 59.900 50.000 0.00 0.00 0.00 4.94
6693 10153 0.100503 GAAGCAAGCAACAACGGTGT 59.899 50.000 0.00 0.00 40.75 4.16
6694 10154 0.179140 AAGCAAGCAACAACGGTGTG 60.179 50.000 6.99 2.32 38.27 3.82
6695 10155 2.230264 GCAAGCAACAACGGTGTGC 61.230 57.895 6.99 13.50 38.27 4.57
6696 10156 1.938814 CAAGCAACAACGGTGTGCG 60.939 57.895 6.99 2.19 38.27 5.34
6697 10157 2.403378 AAGCAACAACGGTGTGCGT 61.403 52.632 6.99 8.79 38.27 5.24
6698 10158 2.591129 AAGCAACAACGGTGTGCGTG 62.591 55.000 6.99 2.40 38.27 5.34
6699 10159 2.788581 CAACAACGGTGTGCGTGT 59.211 55.556 6.99 0.00 38.27 4.49
6700 10160 1.582424 CAACAACGGTGTGCGTGTG 60.582 57.895 6.99 0.00 38.27 3.82
6702 10162 2.022623 CAACGGTGTGCGTGTGTG 59.977 61.111 0.00 0.00 0.00 3.82
6717 10177 2.542595 GTGTGTGGTTCTTGACTTACCG 59.457 50.000 0.00 0.00 34.62 4.02
6723 10183 2.354103 GGTTCTTGACTTACCGGTACCC 60.354 54.545 15.53 6.96 0.00 3.69
6802 10263 0.302890 CACCGCCTACGTCGTACTAG 59.697 60.000 0.00 0.00 37.70 2.57
6803 10264 0.108138 ACCGCCTACGTCGTACTAGT 60.108 55.000 0.00 0.00 37.70 2.57
6807 10348 3.116300 CGCCTACGTCGTACTAGTCTAA 58.884 50.000 0.00 0.00 33.53 2.10
6899 10590 2.891580 GGCGGTGACTATTCTATGGAGA 59.108 50.000 0.00 0.00 0.00 3.71
6902 10593 3.365465 CGGTGACTATTCTATGGAGAGCG 60.365 52.174 0.00 0.00 31.77 5.03
6917 10609 0.242286 GAGCGTGCTTCAGAGTCTCA 59.758 55.000 1.94 0.00 0.00 3.27
6918 10610 0.894141 AGCGTGCTTCAGAGTCTCAT 59.106 50.000 1.94 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 7.535258 CACACTCTTATCCAGAAACAAAAATCG 59.465 37.037 0.00 0.00 0.00 3.34
39 40 5.070001 CCCACACTCTTATCCAGAAACAAA 58.930 41.667 0.00 0.00 0.00 2.83
55 56 0.691078 ACAGACCACAGACCCACACT 60.691 55.000 0.00 0.00 0.00 3.55
61 62 7.609056 TCTACTTTTATAACAGACCACAGACC 58.391 38.462 5.64 0.00 0.00 3.85
64 65 9.706691 TTCTTCTACTTTTATAACAGACCACAG 57.293 33.333 5.64 0.00 0.00 3.66
77 78 5.119588 CGCCACGATGTTTCTTCTACTTTTA 59.880 40.000 0.00 0.00 0.00 1.52
103 104 2.727916 GCGATAAAAGGCGTTTCCACTG 60.728 50.000 4.63 0.00 37.29 3.66
264 271 4.295870 GAACGAAACCAAAATCTCAACCC 58.704 43.478 0.00 0.00 0.00 4.11
302 313 5.650703 GGGCTAATGTAAGGAAGTTTTGCTA 59.349 40.000 0.00 0.00 0.00 3.49
347 359 1.227176 GCCGAGCTAGGGTTAACCG 60.227 63.158 18.39 6.12 46.96 4.44
539 566 2.427320 GGCTGTGGTGCACTGAGA 59.573 61.111 17.98 1.34 35.76 3.27
540 567 2.670934 GGGCTGTGGTGCACTGAG 60.671 66.667 17.98 10.98 35.76 3.35
551 578 3.474570 GGAGGATCGCAGGGCTGT 61.475 66.667 0.00 0.00 34.37 4.40
631 658 2.241722 CTCTTTAAAACATGCACGGCG 58.758 47.619 4.80 4.80 0.00 6.46
661 688 2.110967 CATGGCTTCACCTGGCTCG 61.111 63.158 0.00 0.00 40.22 5.03
693 720 4.135153 CTGCTCCGTCCCCGTCTG 62.135 72.222 0.00 0.00 0.00 3.51
727 761 3.054503 GCAGAGCTGGTGGTGCTG 61.055 66.667 0.00 0.00 41.30 4.41
813 860 2.106684 GCGAGGAAGGGAGGGAATAAAT 59.893 50.000 0.00 0.00 0.00 1.40
935 986 2.476241 GGCAAACAAAATGGCTTTCTCG 59.524 45.455 0.00 0.00 39.99 4.04
967 1019 0.035439 CTGGTAGACCCAATTGCCGT 60.035 55.000 0.00 0.00 44.65 5.68
973 1025 1.207791 CTGCCTCTGGTAGACCCAAT 58.792 55.000 0.00 0.00 44.65 3.16
975 1027 0.324738 CTCTGCCTCTGGTAGACCCA 60.325 60.000 0.31 0.00 39.41 4.51
978 1030 1.045911 CCCCTCTGCCTCTGGTAGAC 61.046 65.000 0.31 0.00 39.41 2.59
979 1031 1.221909 TCCCCTCTGCCTCTGGTAGA 61.222 60.000 4.47 4.47 41.91 2.59
980 1032 0.105246 ATCCCCTCTGCCTCTGGTAG 60.105 60.000 0.00 0.00 36.75 3.18
981 1033 1.241485 TATCCCCTCTGCCTCTGGTA 58.759 55.000 0.00 0.00 0.00 3.25
982 1034 0.570218 ATATCCCCTCTGCCTCTGGT 59.430 55.000 0.00 0.00 0.00 4.00
984 1036 2.021262 TCATATCCCCTCTGCCTCTG 57.979 55.000 0.00 0.00 0.00 3.35
985 1037 2.113233 TGATCATATCCCCTCTGCCTCT 59.887 50.000 0.00 0.00 0.00 3.69
986 1038 2.544721 TGATCATATCCCCTCTGCCTC 58.455 52.381 0.00 0.00 0.00 4.70
987 1039 2.729383 TGATCATATCCCCTCTGCCT 57.271 50.000 0.00 0.00 0.00 4.75
988 1040 2.026449 CCTTGATCATATCCCCTCTGCC 60.026 54.545 0.00 0.00 0.00 4.85
989 1041 2.641815 ACCTTGATCATATCCCCTCTGC 59.358 50.000 0.00 0.00 0.00 4.26
990 1042 4.840680 TGTACCTTGATCATATCCCCTCTG 59.159 45.833 0.00 0.00 0.00 3.35
1009 1061 4.162690 CAGCTCCGGGGCCTGTAC 62.163 72.222 26.35 0.00 0.00 2.90
1014 1066 4.162690 CTGTACAGCTCCGGGGCC 62.163 72.222 26.35 8.28 0.00 5.80
1046 1098 3.141488 GCCTCTTCCTCGCCTCGA 61.141 66.667 0.00 0.00 0.00 4.04
1071 1123 3.511595 TAGACGTACCGCGCCCTG 61.512 66.667 0.00 0.00 46.11 4.45
1080 1132 1.307097 AGATGAGCCCGTAGACGTAC 58.693 55.000 0.85 0.00 37.74 3.67
1177 1229 0.899717 TGGAAGGAAATGCACAGGGC 60.900 55.000 0.00 0.00 45.13 5.19
1182 1234 3.321968 AGAAGGTTTGGAAGGAAATGCAC 59.678 43.478 0.00 0.00 0.00 4.57
1183 1235 3.321682 CAGAAGGTTTGGAAGGAAATGCA 59.678 43.478 0.00 0.00 0.00 3.96
1229 1281 4.765856 AGAGCAGAGCAAATTCAGAATGTT 59.234 37.500 0.00 0.00 37.40 2.71
1246 1298 0.531657 AGCAGAGCAGTACAGAGCAG 59.468 55.000 0.00 0.00 0.00 4.24
1438 1491 2.125350 GCAGACCGCCTCAAGGAG 60.125 66.667 0.00 0.00 37.39 3.69
1439 1492 1.841302 AATGCAGACCGCCTCAAGGA 61.841 55.000 0.00 0.00 41.33 3.36
1444 1497 0.733909 GCAAAAATGCAGACCGCCTC 60.734 55.000 0.00 0.00 41.33 4.70
1445 1498 1.290009 GCAAAAATGCAGACCGCCT 59.710 52.632 0.00 0.00 41.33 5.52
1446 1499 1.006337 TGCAAAAATGCAGACCGCC 60.006 52.632 0.00 0.00 40.23 6.13
1447 1500 4.651585 TGCAAAAATGCAGACCGC 57.348 50.000 0.00 0.00 40.23 5.68
1454 1507 2.479560 GGAGGACCGTATGCAAAAATGC 60.480 50.000 0.00 0.00 0.00 3.56
1455 1508 2.752354 TGGAGGACCGTATGCAAAAATG 59.248 45.455 0.00 0.00 39.42 2.32
1456 1509 3.016736 CTGGAGGACCGTATGCAAAAAT 58.983 45.455 0.00 0.00 39.42 1.82
1457 1510 2.224670 ACTGGAGGACCGTATGCAAAAA 60.225 45.455 0.00 0.00 39.42 1.94
1458 1511 1.349688 ACTGGAGGACCGTATGCAAAA 59.650 47.619 0.00 0.00 39.42 2.44
1459 1512 0.981183 ACTGGAGGACCGTATGCAAA 59.019 50.000 0.00 0.00 39.42 3.68
1460 1513 0.981183 AACTGGAGGACCGTATGCAA 59.019 50.000 0.00 0.00 39.42 4.08
1461 1514 0.535335 GAACTGGAGGACCGTATGCA 59.465 55.000 0.00 0.00 39.42 3.96
1462 1515 0.535335 TGAACTGGAGGACCGTATGC 59.465 55.000 0.00 0.00 39.42 3.14
1463 1516 1.825474 ACTGAACTGGAGGACCGTATG 59.175 52.381 0.00 0.00 39.42 2.39
1464 1517 2.233305 ACTGAACTGGAGGACCGTAT 57.767 50.000 0.00 0.00 39.42 3.06
1465 1518 2.005370 AACTGAACTGGAGGACCGTA 57.995 50.000 0.00 0.00 39.42 4.02
1466 1519 1.070289 GAAACTGAACTGGAGGACCGT 59.930 52.381 0.00 0.00 39.42 4.83
1467 1520 1.608283 GGAAACTGAACTGGAGGACCG 60.608 57.143 0.00 0.00 39.42 4.79
1468 1521 1.420138 TGGAAACTGAACTGGAGGACC 59.580 52.381 0.00 0.00 0.00 4.46
1469 1522 2.158813 TGTGGAAACTGAACTGGAGGAC 60.159 50.000 0.00 0.00 0.00 3.85
1470 1523 2.104792 CTGTGGAAACTGAACTGGAGGA 59.895 50.000 0.00 0.00 0.00 3.71
1471 1524 2.158755 ACTGTGGAAACTGAACTGGAGG 60.159 50.000 0.00 0.00 0.00 4.30
1472 1525 3.134458 GACTGTGGAAACTGAACTGGAG 58.866 50.000 0.00 0.00 0.00 3.86
1473 1526 2.158813 GGACTGTGGAAACTGAACTGGA 60.159 50.000 0.00 0.00 0.00 3.86
1474 1527 2.158755 AGGACTGTGGAAACTGAACTGG 60.159 50.000 0.00 0.00 0.00 4.00
1475 1528 3.134458 GAGGACTGTGGAAACTGAACTG 58.866 50.000 0.00 0.00 0.00 3.16
1476 1529 2.224066 CGAGGACTGTGGAAACTGAACT 60.224 50.000 0.00 0.00 0.00 3.01
1477 1530 2.135933 CGAGGACTGTGGAAACTGAAC 58.864 52.381 0.00 0.00 0.00 3.18
1478 1531 1.760613 ACGAGGACTGTGGAAACTGAA 59.239 47.619 0.00 0.00 0.00 3.02
1479 1532 1.340248 GACGAGGACTGTGGAAACTGA 59.660 52.381 0.00 0.00 0.00 3.41
1480 1533 1.068588 TGACGAGGACTGTGGAAACTG 59.931 52.381 0.00 0.00 0.00 3.16
1481 1534 1.410004 TGACGAGGACTGTGGAAACT 58.590 50.000 0.00 0.00 0.00 2.66
1482 1535 2.234300 TTGACGAGGACTGTGGAAAC 57.766 50.000 0.00 0.00 0.00 2.78
1483 1536 2.940410 GTTTTGACGAGGACTGTGGAAA 59.060 45.455 0.00 0.00 0.00 3.13
1484 1537 2.169769 AGTTTTGACGAGGACTGTGGAA 59.830 45.455 0.00 0.00 0.00 3.53
1485 1538 1.760613 AGTTTTGACGAGGACTGTGGA 59.239 47.619 0.00 0.00 0.00 4.02
1486 1539 2.240493 AGTTTTGACGAGGACTGTGG 57.760 50.000 0.00 0.00 0.00 4.17
1487 1540 5.728351 TTTTAGTTTTGACGAGGACTGTG 57.272 39.130 0.00 0.00 0.00 3.66
1488 1541 6.053005 TCATTTTAGTTTTGACGAGGACTGT 58.947 36.000 0.00 0.00 0.00 3.55
1489 1542 6.539649 TCATTTTAGTTTTGACGAGGACTG 57.460 37.500 0.00 0.00 0.00 3.51
1490 1543 7.063074 CGTATCATTTTAGTTTTGACGAGGACT 59.937 37.037 0.00 0.00 0.00 3.85
1491 1544 7.171434 CGTATCATTTTAGTTTTGACGAGGAC 58.829 38.462 0.00 0.00 0.00 3.85
1496 1549 6.194508 CCATGCGTATCATTTTAGTTTTGACG 59.805 38.462 0.00 0.00 31.79 4.35
1497 1550 6.472163 CCCATGCGTATCATTTTAGTTTTGAC 59.528 38.462 0.00 0.00 31.79 3.18
1498 1551 6.559810 CCCATGCGTATCATTTTAGTTTTGA 58.440 36.000 0.00 0.00 31.79 2.69
1509 1562 1.881973 GTCATTGCCCATGCGTATCAT 59.118 47.619 0.00 0.00 41.78 2.45
1512 1565 1.881973 GATGTCATTGCCCATGCGTAT 59.118 47.619 0.00 0.00 41.78 3.06
1514 1567 0.680601 TGATGTCATTGCCCATGCGT 60.681 50.000 0.00 0.00 41.78 5.24
1515 1568 0.456628 TTGATGTCATTGCCCATGCG 59.543 50.000 0.00 0.00 41.78 4.73
1516 1569 2.101750 TCATTGATGTCATTGCCCATGC 59.898 45.455 0.00 0.00 38.26 4.06
1517 1570 4.116961 GTTCATTGATGTCATTGCCCATG 58.883 43.478 0.00 0.00 0.00 3.66
1518 1571 3.133362 GGTTCATTGATGTCATTGCCCAT 59.867 43.478 0.00 0.00 0.00 4.00
1519 1572 2.496871 GGTTCATTGATGTCATTGCCCA 59.503 45.455 0.00 0.00 0.00 5.36
1521 1574 2.164219 ACGGTTCATTGATGTCATTGCC 59.836 45.455 0.00 0.00 0.00 4.52
1522 1575 3.492421 ACGGTTCATTGATGTCATTGC 57.508 42.857 0.00 0.00 0.00 3.56
1523 1576 5.117440 CACAAACGGTTCATTGATGTCATTG 59.883 40.000 0.00 0.00 0.00 2.82
1525 1578 4.278170 ACACAAACGGTTCATTGATGTCAT 59.722 37.500 0.00 0.00 0.00 3.06
1527 1580 4.223320 ACACAAACGGTTCATTGATGTC 57.777 40.909 0.00 0.00 0.00 3.06
1529 1582 3.980775 GGAACACAAACGGTTCATTGATG 59.019 43.478 7.48 0.00 44.96 3.07
1540 1603 3.095738 GTGAACGAAAGGAACACAAACG 58.904 45.455 0.00 0.00 34.52 3.60
1555 1618 3.181530 CGCTTGATGTAAGGAAGTGAACG 60.182 47.826 0.00 0.00 36.87 3.95
1666 1729 4.378874 GGCATACACAAGAAACTTGAGAGC 60.379 45.833 16.65 14.06 0.00 4.09
1668 1731 3.745975 CGGCATACACAAGAAACTTGAGA 59.254 43.478 16.65 3.66 0.00 3.27
1680 1743 1.337354 ACGATTGACACGGCATACACA 60.337 47.619 0.00 0.00 34.93 3.72
1795 1858 3.271014 CACACCATGCAGTGAGGC 58.729 61.111 12.62 0.00 40.34 4.70
2142 2904 5.815740 ACCATTCACCAAACGATCTACATAC 59.184 40.000 0.00 0.00 0.00 2.39
2255 3085 5.045869 TCTGACTAGGGTTAATGGGTTTGAG 60.046 44.000 0.00 0.00 0.00 3.02
2288 3119 9.438163 AAAGGTGAAATGGGATCATTATAACAT 57.562 29.630 0.00 0.00 42.29 2.71
2317 3426 3.696051 ACTAATTGCTGCACTACCATTGG 59.304 43.478 0.00 0.00 0.00 3.16
2339 3575 7.878547 TTTCCAATGTATCATTGCAGACATA 57.121 32.000 14.59 0.00 32.31 2.29
2344 3580 6.921857 GGAGAATTTCCAATGTATCATTGCAG 59.078 38.462 14.59 5.15 46.01 4.41
2361 3597 4.990526 TGCTGAGAGAAAAGGGAGAATTT 58.009 39.130 0.00 0.00 0.00 1.82
2447 3716 7.381948 TCATGTCATGTTTTCATTCTTTTTCCG 59.618 33.333 12.54 0.00 38.64 4.30
2455 3728 7.712264 TGGTTTTCATGTCATGTTTTCATTC 57.288 32.000 12.54 0.00 38.64 2.67
2612 4090 7.011482 CGGAGGGAGTAAACAAGAATCATTAAG 59.989 40.741 0.00 0.00 0.00 1.85
2628 4106 2.176889 CTTTCAAGGACGGAGGGAGTA 58.823 52.381 0.00 0.00 0.00 2.59
2629 4107 0.977395 CTTTCAAGGACGGAGGGAGT 59.023 55.000 0.00 0.00 0.00 3.85
2630 4108 1.205893 CTCTTTCAAGGACGGAGGGAG 59.794 57.143 0.00 0.00 0.00 4.30
2631 4109 1.267121 CTCTTTCAAGGACGGAGGGA 58.733 55.000 0.00 0.00 0.00 4.20
2632 4110 0.977395 ACTCTTTCAAGGACGGAGGG 59.023 55.000 0.00 0.00 0.00 4.30
2633 4111 1.344763 ACACTCTTTCAAGGACGGAGG 59.655 52.381 0.00 0.00 0.00 4.30
2634 4112 2.821991 ACACTCTTTCAAGGACGGAG 57.178 50.000 0.00 0.00 0.00 4.63
2635 4113 3.228453 AGTACACTCTTTCAAGGACGGA 58.772 45.455 0.00 0.00 0.00 4.69
2636 4114 3.662247 AGTACACTCTTTCAAGGACGG 57.338 47.619 0.00 0.00 0.00 4.79
2637 4115 3.988517 GGAAGTACACTCTTTCAAGGACG 59.011 47.826 0.00 0.00 0.00 4.79
2638 4116 4.957296 TGGAAGTACACTCTTTCAAGGAC 58.043 43.478 0.00 0.00 30.93 3.85
2639 4117 5.130477 AGTTGGAAGTACACTCTTTCAAGGA 59.870 40.000 0.00 0.00 41.68 3.36
2640 4118 5.368989 AGTTGGAAGTACACTCTTTCAAGG 58.631 41.667 0.00 0.00 41.68 3.61
2641 4119 6.927294 AAGTTGGAAGTACACTCTTTCAAG 57.073 37.500 0.00 0.00 41.68 3.02
2642 4120 6.657541 ACAAAGTTGGAAGTACACTCTTTCAA 59.342 34.615 0.00 0.00 39.65 2.69
2643 4121 6.177610 ACAAAGTTGGAAGTACACTCTTTCA 58.822 36.000 0.00 0.00 31.87 2.69
2644 4122 6.679327 ACAAAGTTGGAAGTACACTCTTTC 57.321 37.500 0.00 0.00 0.00 2.62
2645 4123 6.127730 CCAACAAAGTTGGAAGTACACTCTTT 60.128 38.462 21.24 0.00 42.06 2.52
2646 4124 5.357032 CCAACAAAGTTGGAAGTACACTCTT 59.643 40.000 21.24 0.00 42.06 2.85
2647 4125 4.881850 CCAACAAAGTTGGAAGTACACTCT 59.118 41.667 21.24 0.00 42.06 3.24
2648 4126 4.879545 TCCAACAAAGTTGGAAGTACACTC 59.120 41.667 24.83 0.00 44.90 3.51
2649 4127 4.850680 TCCAACAAAGTTGGAAGTACACT 58.149 39.130 24.83 0.00 44.90 3.55
2657 4135 5.930837 AATGACTTTCCAACAAAGTTGGA 57.069 34.783 23.64 23.64 46.08 3.53
2658 4136 6.983474 AAAATGACTTTCCAACAAAGTTGG 57.017 33.333 20.09 20.09 40.27 3.77
2703 4181 9.634021 TGGCATAAATGTTGGTCTATTATTGTA 57.366 29.630 0.00 0.00 0.00 2.41
2704 4182 8.532186 TGGCATAAATGTTGGTCTATTATTGT 57.468 30.769 0.00 0.00 0.00 2.71
2705 4183 9.630098 GATGGCATAAATGTTGGTCTATTATTG 57.370 33.333 0.00 0.00 0.00 1.90
2706 4184 9.365906 TGATGGCATAAATGTTGGTCTATTATT 57.634 29.630 0.00 0.00 0.00 1.40
2707 4185 8.938801 TGATGGCATAAATGTTGGTCTATTAT 57.061 30.769 0.00 0.00 0.00 1.28
2708 4186 8.759481 TTGATGGCATAAATGTTGGTCTATTA 57.241 30.769 0.00 0.00 0.00 0.98
2709 4187 7.658525 TTGATGGCATAAATGTTGGTCTATT 57.341 32.000 0.00 0.00 0.00 1.73
2710 4188 7.658525 TTTGATGGCATAAATGTTGGTCTAT 57.341 32.000 0.00 0.00 0.00 1.98
2711 4189 7.658525 ATTTGATGGCATAAATGTTGGTCTA 57.341 32.000 0.00 0.00 0.00 2.59
2712 4190 5.999205 TTTGATGGCATAAATGTTGGTCT 57.001 34.783 0.00 0.00 0.00 3.85
2713 4191 7.981225 ACTAATTTGATGGCATAAATGTTGGTC 59.019 33.333 0.00 0.00 0.00 4.02
2714 4192 7.850193 ACTAATTTGATGGCATAAATGTTGGT 58.150 30.769 0.00 3.42 0.00 3.67
2715 4193 9.467258 CTACTAATTTGATGGCATAAATGTTGG 57.533 33.333 0.00 2.80 0.00 3.77
2716 4194 8.971321 GCTACTAATTTGATGGCATAAATGTTG 58.029 33.333 0.00 5.40 0.00 3.33
2717 4195 8.694540 TGCTACTAATTTGATGGCATAAATGTT 58.305 29.630 0.00 0.57 0.00 2.71
2718 4196 8.236585 TGCTACTAATTTGATGGCATAAATGT 57.763 30.769 0.00 5.58 0.00 2.71
2719 4197 9.701098 AATGCTACTAATTTGATGGCATAAATG 57.299 29.630 0.00 0.32 37.85 2.32
2722 4200 9.791801 TCTAATGCTACTAATTTGATGGCATAA 57.208 29.630 0.00 0.00 37.85 1.90
2723 4201 9.964354 ATCTAATGCTACTAATTTGATGGCATA 57.036 29.630 0.00 0.00 37.85 3.14
2724 4202 8.874744 ATCTAATGCTACTAATTTGATGGCAT 57.125 30.769 0.00 0.00 40.04 4.40
2725 4203 8.696043 AATCTAATGCTACTAATTTGATGGCA 57.304 30.769 0.00 0.00 32.33 4.92
2726 4204 8.786898 TGAATCTAATGCTACTAATTTGATGGC 58.213 33.333 0.00 0.00 32.33 4.40
2767 4245 9.990360 TGTGAAATCAAATAGGTATATAGCGAA 57.010 29.630 6.30 0.00 0.00 4.70
2768 4246 9.990360 TTGTGAAATCAAATAGGTATATAGCGA 57.010 29.630 6.30 1.75 0.00 4.93
2775 4253 8.970020 TCAATGCTTGTGAAATCAAATAGGTAT 58.030 29.630 0.00 0.00 0.00 2.73
2776 4254 8.243426 GTCAATGCTTGTGAAATCAAATAGGTA 58.757 33.333 0.00 0.00 0.00 3.08
2777 4255 7.092716 GTCAATGCTTGTGAAATCAAATAGGT 58.907 34.615 0.00 0.00 0.00 3.08
2778 4256 7.092079 TGTCAATGCTTGTGAAATCAAATAGG 58.908 34.615 0.00 0.00 0.00 2.57
2779 4257 8.697846 ATGTCAATGCTTGTGAAATCAAATAG 57.302 30.769 0.00 0.00 0.00 1.73
2781 4259 9.661563 AATATGTCAATGCTTGTGAAATCAAAT 57.338 25.926 0.00 0.00 0.00 2.32
2782 4260 9.491675 AAATATGTCAATGCTTGTGAAATCAAA 57.508 25.926 0.00 0.00 0.00 2.69
2783 4261 9.491675 AAAATATGTCAATGCTTGTGAAATCAA 57.508 25.926 0.00 0.00 0.00 2.57
2784 4262 9.491675 AAAAATATGTCAATGCTTGTGAAATCA 57.508 25.926 0.00 0.00 0.00 2.57
2785 4263 9.749490 CAAAAATATGTCAATGCTTGTGAAATC 57.251 29.630 0.00 0.00 0.00 2.17
2786 4264 8.231837 GCAAAAATATGTCAATGCTTGTGAAAT 58.768 29.630 0.00 0.00 0.00 2.17
2787 4265 7.226128 TGCAAAAATATGTCAATGCTTGTGAAA 59.774 29.630 0.00 0.00 34.97 2.69
2788 4266 6.704937 TGCAAAAATATGTCAATGCTTGTGAA 59.295 30.769 0.00 0.00 34.97 3.18
2789 4267 6.145858 GTGCAAAAATATGTCAATGCTTGTGA 59.854 34.615 0.00 0.00 34.97 3.58
2790 4268 6.073711 TGTGCAAAAATATGTCAATGCTTGTG 60.074 34.615 0.00 0.00 34.97 3.33
2791 4269 5.990386 TGTGCAAAAATATGTCAATGCTTGT 59.010 32.000 0.00 0.00 34.97 3.16
2792 4270 6.469139 TGTGCAAAAATATGTCAATGCTTG 57.531 33.333 0.00 0.00 34.97 4.01
2793 4271 7.227116 AGTTTGTGCAAAAATATGTCAATGCTT 59.773 29.630 5.11 0.00 34.97 3.91
2794 4272 6.707161 AGTTTGTGCAAAAATATGTCAATGCT 59.293 30.769 5.11 0.00 34.97 3.79
2795 4273 6.890558 AGTTTGTGCAAAAATATGTCAATGC 58.109 32.000 5.11 0.00 31.33 3.56
2796 4274 7.221970 CGAGTTTGTGCAAAAATATGTCAATG 58.778 34.615 5.11 0.00 31.33 2.82
2797 4275 6.365789 CCGAGTTTGTGCAAAAATATGTCAAT 59.634 34.615 5.11 0.00 31.33 2.57
2798 4276 5.689514 CCGAGTTTGTGCAAAAATATGTCAA 59.310 36.000 5.11 0.00 31.33 3.18
2799 4277 5.218885 CCGAGTTTGTGCAAAAATATGTCA 58.781 37.500 5.11 0.00 31.33 3.58
2800 4278 5.219633 ACCGAGTTTGTGCAAAAATATGTC 58.780 37.500 5.11 0.30 31.33 3.06
2801 4279 5.195001 ACCGAGTTTGTGCAAAAATATGT 57.805 34.783 5.11 0.00 31.33 2.29
2802 4280 5.218885 TGACCGAGTTTGTGCAAAAATATG 58.781 37.500 5.11 0.00 31.33 1.78
2803 4281 5.446143 TGACCGAGTTTGTGCAAAAATAT 57.554 34.783 5.11 0.00 31.33 1.28
2804 4282 4.902443 TGACCGAGTTTGTGCAAAAATA 57.098 36.364 5.11 0.00 31.33 1.40
2805 4283 3.791973 TGACCGAGTTTGTGCAAAAAT 57.208 38.095 5.11 0.00 31.33 1.82
2806 4284 3.577649 TTGACCGAGTTTGTGCAAAAA 57.422 38.095 0.00 0.00 31.33 1.94
2807 4285 3.057174 AGTTTGACCGAGTTTGTGCAAAA 60.057 39.130 0.00 0.00 31.33 2.44
2808 4286 2.490115 AGTTTGACCGAGTTTGTGCAAA 59.510 40.909 0.00 0.00 0.00 3.68
2809 4287 2.088423 AGTTTGACCGAGTTTGTGCAA 58.912 42.857 0.00 0.00 0.00 4.08
2810 4288 1.745232 AGTTTGACCGAGTTTGTGCA 58.255 45.000 0.00 0.00 0.00 4.57
2811 4289 2.844122 AAGTTTGACCGAGTTTGTGC 57.156 45.000 0.00 0.00 0.00 4.57
2812 4290 4.094294 TCTCAAAGTTTGACCGAGTTTGTG 59.906 41.667 14.35 1.47 38.17 3.33
2813 4291 4.258543 TCTCAAAGTTTGACCGAGTTTGT 58.741 39.130 14.35 0.00 38.17 2.83
2814 4292 4.875544 TCTCAAAGTTTGACCGAGTTTG 57.124 40.909 14.35 2.86 38.28 2.93
2815 4293 6.289064 ACTATCTCAAAGTTTGACCGAGTTT 58.711 36.000 14.35 0.45 35.46 2.66
2816 4294 5.855045 ACTATCTCAAAGTTTGACCGAGTT 58.145 37.500 14.35 3.34 35.46 3.01
2817 4295 5.470047 ACTATCTCAAAGTTTGACCGAGT 57.530 39.130 14.35 13.26 35.46 4.18
2818 4296 5.926542 TCAACTATCTCAAAGTTTGACCGAG 59.073 40.000 14.35 12.69 34.99 4.63
2819 4297 5.694910 GTCAACTATCTCAAAGTTTGACCGA 59.305 40.000 14.35 11.50 34.99 4.69
2820 4298 5.107065 GGTCAACTATCTCAAAGTTTGACCG 60.107 44.000 14.35 6.38 40.75 4.79
2821 4299 5.181433 GGGTCAACTATCTCAAAGTTTGACC 59.819 44.000 14.35 18.78 44.18 4.02
2822 4300 5.998363 AGGGTCAACTATCTCAAAGTTTGAC 59.002 40.000 14.35 2.35 34.99 3.18
2823 4301 6.187727 AGGGTCAACTATCTCAAAGTTTGA 57.812 37.500 17.16 17.16 34.99 2.69
2824 4302 5.412904 GGAGGGTCAACTATCTCAAAGTTTG 59.587 44.000 9.44 9.44 34.99 2.93
2825 4303 5.073144 TGGAGGGTCAACTATCTCAAAGTTT 59.927 40.000 0.00 0.00 34.99 2.66
2826 4304 4.597507 TGGAGGGTCAACTATCTCAAAGTT 59.402 41.667 0.00 0.00 37.67 2.66
2827 4305 4.168101 TGGAGGGTCAACTATCTCAAAGT 58.832 43.478 0.00 0.00 0.00 2.66
2828 4306 4.826274 TGGAGGGTCAACTATCTCAAAG 57.174 45.455 0.00 0.00 0.00 2.77
2829 4307 4.349636 TGTTGGAGGGTCAACTATCTCAAA 59.650 41.667 8.80 0.00 45.15 2.69
2830 4308 3.907474 TGTTGGAGGGTCAACTATCTCAA 59.093 43.478 8.80 0.00 45.15 3.02
2831 4309 3.516586 TGTTGGAGGGTCAACTATCTCA 58.483 45.455 8.80 0.00 45.15 3.27
2832 4310 4.553330 TTGTTGGAGGGTCAACTATCTC 57.447 45.455 8.80 0.00 45.15 2.75
2833 4311 4.351111 ACTTTGTTGGAGGGTCAACTATCT 59.649 41.667 8.80 0.00 45.15 1.98
2834 4312 4.652822 ACTTTGTTGGAGGGTCAACTATC 58.347 43.478 8.80 0.00 45.15 2.08
2835 4313 4.724279 ACTTTGTTGGAGGGTCAACTAT 57.276 40.909 8.80 0.00 45.15 2.12
2836 4314 4.204012 CAACTTTGTTGGAGGGTCAACTA 58.796 43.478 8.80 0.00 45.15 2.24
2837 4315 3.023832 CAACTTTGTTGGAGGGTCAACT 58.976 45.455 8.80 0.00 45.15 3.16
2838 4316 2.100749 CCAACTTTGTTGGAGGGTCAAC 59.899 50.000 21.06 0.00 45.13 3.18
2839 4317 2.024846 TCCAACTTTGTTGGAGGGTCAA 60.025 45.455 23.38 4.76 43.17 3.18
2840 4318 1.566703 TCCAACTTTGTTGGAGGGTCA 59.433 47.619 23.38 5.39 43.17 4.02
2841 4319 2.358322 TCCAACTTTGTTGGAGGGTC 57.642 50.000 23.38 0.00 43.17 4.46
2846 4324 4.850680 AGTGTACTTCCAACTTTGTTGGA 58.149 39.130 23.38 23.38 46.08 3.53
2847 4325 4.881850 AGAGTGTACTTCCAACTTTGTTGG 59.118 41.667 19.97 19.97 40.87 3.77
2848 4326 6.436843 AAGAGTGTACTTCCAACTTTGTTG 57.563 37.500 3.69 3.69 0.00 3.33
2849 4327 6.657541 TGAAAGAGTGTACTTCCAACTTTGTT 59.342 34.615 0.00 0.00 0.00 2.83
2850 4328 6.177610 TGAAAGAGTGTACTTCCAACTTTGT 58.822 36.000 0.00 0.00 0.00 2.83
2851 4329 6.677781 TGAAAGAGTGTACTTCCAACTTTG 57.322 37.500 0.00 0.00 0.00 2.77
2852 4330 6.318900 CCTTGAAAGAGTGTACTTCCAACTTT 59.681 38.462 0.00 0.00 0.00 2.66
2853 4331 5.823045 CCTTGAAAGAGTGTACTTCCAACTT 59.177 40.000 0.00 0.00 0.00 2.66
2854 4332 5.130477 TCCTTGAAAGAGTGTACTTCCAACT 59.870 40.000 0.00 0.00 0.00 3.16
2855 4333 5.236695 GTCCTTGAAAGAGTGTACTTCCAAC 59.763 44.000 0.00 0.00 0.00 3.77
2856 4334 5.365619 GTCCTTGAAAGAGTGTACTTCCAA 58.634 41.667 0.00 0.00 0.00 3.53
2857 4335 4.500887 CGTCCTTGAAAGAGTGTACTTCCA 60.501 45.833 0.00 0.00 0.00 3.53
2858 4336 3.988517 CGTCCTTGAAAGAGTGTACTTCC 59.011 47.826 0.00 0.00 0.00 3.46
2859 4337 3.988517 CCGTCCTTGAAAGAGTGTACTTC 59.011 47.826 0.00 0.00 0.00 3.01
2860 4338 3.640029 TCCGTCCTTGAAAGAGTGTACTT 59.360 43.478 0.00 0.00 0.00 2.24
2861 4339 3.228453 TCCGTCCTTGAAAGAGTGTACT 58.772 45.455 0.00 0.00 0.00 2.73
2862 4340 3.576648 CTCCGTCCTTGAAAGAGTGTAC 58.423 50.000 0.00 0.00 0.00 2.90
2863 4341 2.561419 CCTCCGTCCTTGAAAGAGTGTA 59.439 50.000 0.00 0.00 0.00 2.90
2864 4342 1.344763 CCTCCGTCCTTGAAAGAGTGT 59.655 52.381 0.00 0.00 0.00 3.55
2865 4343 1.338200 CCCTCCGTCCTTGAAAGAGTG 60.338 57.143 0.00 0.00 0.00 3.51
2866 4344 0.977395 CCCTCCGTCCTTGAAAGAGT 59.023 55.000 0.00 0.00 0.00 3.24
2867 4345 1.205893 CTCCCTCCGTCCTTGAAAGAG 59.794 57.143 0.00 0.00 0.00 2.85
2868 4346 1.267121 CTCCCTCCGTCCTTGAAAGA 58.733 55.000 0.00 0.00 0.00 2.52
2869 4347 0.977395 ACTCCCTCCGTCCTTGAAAG 59.023 55.000 0.00 0.00 0.00 2.62
2870 4348 2.314071 TACTCCCTCCGTCCTTGAAA 57.686 50.000 0.00 0.00 0.00 2.69
2871 4349 2.544844 ATACTCCCTCCGTCCTTGAA 57.455 50.000 0.00 0.00 0.00 2.69
2872 4350 3.897657 ATATACTCCCTCCGTCCTTGA 57.102 47.619 0.00 0.00 0.00 3.02
2873 4351 5.047943 CAGTAATATACTCCCTCCGTCCTTG 60.048 48.000 0.00 0.00 36.76 3.61
2874 4352 5.078256 CAGTAATATACTCCCTCCGTCCTT 58.922 45.833 0.00 0.00 36.76 3.36
2875 4353 4.353191 TCAGTAATATACTCCCTCCGTCCT 59.647 45.833 0.00 0.00 36.76 3.85
2876 4354 4.660168 TCAGTAATATACTCCCTCCGTCC 58.340 47.826 0.00 0.00 36.76 4.79
2877 4355 5.315348 ACTCAGTAATATACTCCCTCCGTC 58.685 45.833 0.00 0.00 36.76 4.79
2878 4356 5.321934 ACTCAGTAATATACTCCCTCCGT 57.678 43.478 0.00 0.00 36.76 4.69
2879 4357 6.651975 AAACTCAGTAATATACTCCCTCCG 57.348 41.667 0.00 0.00 36.76 4.63
2880 4358 8.019656 TCAAAACTCAGTAATATACTCCCTCC 57.980 38.462 0.00 0.00 36.76 4.30
2881 4359 8.915036 TCTCAAAACTCAGTAATATACTCCCTC 58.085 37.037 0.00 0.00 36.76 4.30
2882 4360 8.840200 TCTCAAAACTCAGTAATATACTCCCT 57.160 34.615 0.00 0.00 36.76 4.20
2883 4361 9.535878 CTTCTCAAAACTCAGTAATATACTCCC 57.464 37.037 0.00 0.00 36.76 4.30
3113 5192 5.796350 ACACAGCTAATTAAATGTCCGAC 57.204 39.130 0.00 0.00 0.00 4.79
3150 5230 9.953697 AAATAGTTTTAACATTGCGTTGAAGTA 57.046 25.926 0.00 0.00 38.63 2.24
3159 5239 6.162777 TGGCCTGAAATAGTTTTAACATTGC 58.837 36.000 3.32 0.00 0.00 3.56
3186 5266 3.006110 AGCACACAAAACATCATCCTTGG 59.994 43.478 0.00 0.00 0.00 3.61
3275 5355 7.279750 TGGAACGTACAGAATATATAGCACA 57.720 36.000 0.00 0.00 0.00 4.57
3350 5430 3.118261 ACACCGCCATCATTATCTTCACT 60.118 43.478 0.00 0.00 0.00 3.41
3472 5552 6.773976 TCCTCTCTTTTGTCAACATTTGTT 57.226 33.333 0.00 0.00 39.12 2.83
3474 5554 7.428020 TCAATCCTCTCTTTTGTCAACATTTG 58.572 34.615 0.00 0.00 0.00 2.32
3551 5637 2.500098 TCTGCTCCTAACGCCACTTATT 59.500 45.455 0.00 0.00 0.00 1.40
3589 5675 5.609423 CCAACTGAACATTTCCCAAAATCA 58.391 37.500 0.00 0.00 32.69 2.57
3604 5690 4.704540 TCTTTCTTTCTTGTGCCAACTGAA 59.295 37.500 0.00 0.00 0.00 3.02
3657 5743 7.875327 AGTTCAAGTAACTACAACCATTTGT 57.125 32.000 0.00 0.00 46.85 2.83
3675 5761 3.645212 TGATCATTTGCCCCAAAGTTCAA 59.355 39.130 0.00 0.00 36.76 2.69
3843 6035 7.142680 ACAGTTTTGGTTATCGGTTAAACATG 58.857 34.615 0.00 0.00 37.35 3.21
3858 6050 2.362077 GGTGAGCATGAACAGTTTTGGT 59.638 45.455 0.00 2.48 0.00 3.67
3871 6063 0.319405 GCAAGGCAAAAGGTGAGCAT 59.681 50.000 0.00 0.00 0.00 3.79
3879 6071 2.485903 TGAAGCAATGCAAGGCAAAAG 58.514 42.857 8.35 0.00 43.62 2.27
3933 6125 6.311735 ACCCTCATTAACCTTTTTAGCAAGA 58.688 36.000 0.00 0.00 0.00 3.02
3999 6191 2.138320 CTGTGTAGTGCAGACCAACAG 58.862 52.381 0.00 0.00 36.12 3.16
4073 6265 2.914838 CGAAAGCCTTTTTCGGTAATGC 59.085 45.455 12.72 0.00 45.17 3.56
4089 6281 1.729284 TAAGTAAAGCGGGGCGAAAG 58.271 50.000 0.00 0.00 0.00 2.62
4090 6282 1.805943 GTTAAGTAAAGCGGGGCGAAA 59.194 47.619 0.00 0.00 0.00 3.46
4091 6283 1.270732 TGTTAAGTAAAGCGGGGCGAA 60.271 47.619 0.00 0.00 0.00 4.70
4092 6284 0.321021 TGTTAAGTAAAGCGGGGCGA 59.679 50.000 0.00 0.00 0.00 5.54
4093 6285 1.375551 ATGTTAAGTAAAGCGGGGCG 58.624 50.000 0.00 0.00 0.00 6.13
4094 6286 2.734175 GCAATGTTAAGTAAAGCGGGGC 60.734 50.000 0.00 0.00 0.00 5.80
4095 6287 2.490115 TGCAATGTTAAGTAAAGCGGGG 59.510 45.455 0.00 0.00 0.00 5.73
4096 6288 3.840890 TGCAATGTTAAGTAAAGCGGG 57.159 42.857 0.00 0.00 0.00 6.13
4097 6289 5.444481 GCAAATGCAATGTTAAGTAAAGCGG 60.444 40.000 0.00 0.00 41.59 5.52
4099 6291 5.444481 CCGCAAATGCAATGTTAAGTAAAGC 60.444 40.000 6.18 0.00 42.21 3.51
4100 6292 5.444481 GCCGCAAATGCAATGTTAAGTAAAG 60.444 40.000 6.18 0.00 42.21 1.85
4101 6293 4.387256 GCCGCAAATGCAATGTTAAGTAAA 59.613 37.500 6.18 0.00 42.21 2.01
4102 6294 3.923461 GCCGCAAATGCAATGTTAAGTAA 59.077 39.130 6.18 0.00 42.21 2.24
4120 7288 2.283351 GCAATTGATGAAAATGAGCCGC 59.717 45.455 10.34 0.00 0.00 6.53
4123 7291 6.247903 CACATTGCAATTGATGAAAATGAGC 58.752 36.000 9.83 0.00 37.73 4.26
4268 7436 6.126594 CCAATTTCAGGGTACTATAACCTCCA 60.127 42.308 0.00 0.00 44.37 3.86
4273 7441 5.298527 GGTGCCAATTTCAGGGTACTATAAC 59.701 44.000 0.00 0.00 39.42 1.89
4278 7446 1.613255 CGGTGCCAATTTCAGGGTACT 60.613 52.381 0.00 0.00 39.42 2.73
4360 7530 2.603075 TTGCAGGCTGGGTATCTTTT 57.397 45.000 17.64 0.00 0.00 2.27
4367 7537 0.471591 TCCAATTTTGCAGGCTGGGT 60.472 50.000 17.64 0.00 0.00 4.51
4382 7552 2.606519 AGGCGCTAGGTGGTCCAA 60.607 61.111 7.64 0.00 35.89 3.53
4384 7554 3.075005 TGAGGCGCTAGGTGGTCC 61.075 66.667 7.64 0.00 0.00 4.46
4430 7631 3.117663 TGGTAGGCCCTTAATAAAGCTGG 60.118 47.826 0.00 0.00 0.00 4.85
4493 7694 4.504514 CCCTACAATGCTACATGATGCTCT 60.505 45.833 0.00 0.00 0.00 4.09
4495 7696 3.497405 CCCCTACAATGCTACATGATGCT 60.497 47.826 0.00 0.00 0.00 3.79
4606 7811 7.084486 ACTGCATTTACTAGCAAACTAAAAGC 58.916 34.615 0.00 0.00 40.73 3.51
4682 7889 2.028748 GGCTGACACAATGGAGCAAATT 60.029 45.455 0.00 0.00 31.06 1.82
4700 7907 3.941483 CGATTCCAGTAGAAAATGTGGCT 59.059 43.478 0.00 0.00 38.21 4.75
4898 8142 3.971702 GGAGGTGCCAACAGCCCT 61.972 66.667 0.00 0.00 45.66 5.19
4964 8242 9.452287 AATTAACATAGATTTGCATGCCTTTTT 57.548 25.926 16.68 0.56 0.00 1.94
4965 8243 8.885722 CAATTAACATAGATTTGCATGCCTTTT 58.114 29.630 16.68 0.00 0.00 2.27
4966 8244 8.259411 TCAATTAACATAGATTTGCATGCCTTT 58.741 29.630 16.68 0.00 0.00 3.11
4968 8246 7.350744 TCAATTAACATAGATTTGCATGCCT 57.649 32.000 16.68 7.36 0.00 4.75
4969 8247 8.597662 AATCAATTAACATAGATTTGCATGCC 57.402 30.769 16.68 0.00 0.00 4.40
5021 8328 5.354513 AGCATTGAAGAGATTCATGACAGTG 59.645 40.000 0.00 0.00 0.00 3.66
5037 8348 2.230992 GGGTAATGTGCACAGCATTGAA 59.769 45.455 25.84 0.00 41.91 2.69
5041 8352 1.176527 GTGGGTAATGTGCACAGCAT 58.823 50.000 25.84 15.77 41.91 3.79
5048 8359 4.435425 TGTTAGTATCGTGGGTAATGTGC 58.565 43.478 0.00 0.00 0.00 4.57
5084 8396 3.297830 TCTCATCGCTTCGAAACTGAA 57.702 42.857 0.00 0.00 39.99 3.02
5085 8397 3.439293 GATCTCATCGCTTCGAAACTGA 58.561 45.455 0.00 0.00 39.99 3.41
5241 8553 2.450476 ACAAGGATGGGTGCATTTCTC 58.550 47.619 0.00 0.00 0.00 2.87
5253 8565 7.424803 TGTTGTCACTTCAAATTACAAGGATG 58.575 34.615 0.00 0.00 31.19 3.51
5295 8647 7.226918 GGCAAGAACTGAACTATATTAGAACCC 59.773 40.741 0.00 0.00 0.00 4.11
5331 8683 4.634004 TGTAATGTGGCAATGTAGCAGTAC 59.366 41.667 0.00 0.00 35.83 2.73
5339 8691 7.109501 TGTTACTAGATGTAATGTGGCAATGT 58.890 34.615 0.00 0.00 42.36 2.71
5352 8704 6.266558 GGATGTGAGAGGATGTTACTAGATGT 59.733 42.308 0.00 0.00 0.00 3.06
5460 8813 4.521639 AGAATGGCGACTTACCGTATATGA 59.478 41.667 0.00 0.00 0.00 2.15
5548 8903 6.597672 AGTGTACTGAAACTGAATGTGAACAA 59.402 34.615 0.00 0.00 0.00 2.83
5556 8911 6.166982 GGCTTCTAGTGTACTGAAACTGAAT 58.833 40.000 0.00 0.00 0.00 2.57
5575 8930 5.407502 ACAAACACACTAAAACTTGGCTTC 58.592 37.500 0.00 0.00 0.00 3.86
5662 9017 6.101881 CCCCATTCTTTAGAATTACTCCCTCT 59.898 42.308 2.27 0.00 42.41 3.69
5803 9164 6.752351 ACAAATCGTCAGTATTACTACAGCAG 59.248 38.462 0.00 0.00 0.00 4.24
5823 9184 1.242076 GCAGTGTGCAGAGGACAAAT 58.758 50.000 0.00 0.00 44.26 2.32
5867 9228 1.540363 GCAGGTCGTTTCCTTGACAGA 60.540 52.381 0.00 0.00 36.83 3.41
5873 9234 1.164041 CGTTGGCAGGTCGTTTCCTT 61.164 55.000 0.00 0.00 35.37 3.36
5881 9242 1.338200 ACTCTTCATCGTTGGCAGGTC 60.338 52.381 0.00 0.00 0.00 3.85
6155 9558 4.339814 GGTGTGGGTGAGAACATTTTACAA 59.660 41.667 0.00 0.00 0.00 2.41
6259 9697 3.962718 ACAAGGAGCCCATGGAATAATTG 59.037 43.478 15.22 14.36 0.00 2.32
6315 9753 1.547820 CAAGACACTGCCAGAGCTCTA 59.452 52.381 17.75 0.00 40.80 2.43
6361 9800 1.916181 TCCACTGATTTCCCCCTCTTC 59.084 52.381 0.00 0.00 0.00 2.87
6367 9806 0.106967 GGAGCTCCACTGATTTCCCC 60.107 60.000 28.43 0.00 35.64 4.81
6370 9809 2.235898 AGACTGGAGCTCCACTGATTTC 59.764 50.000 32.00 18.62 42.01 2.17
6379 9818 0.529555 GCGATTGAGACTGGAGCTCC 60.530 60.000 26.78 26.78 0.00 4.70
6383 9822 0.820226 TCAGGCGATTGAGACTGGAG 59.180 55.000 0.00 0.00 46.94 3.86
6529 9985 2.812011 AGAAACGTGCCATCTGGTTAAC 59.188 45.455 0.00 0.00 37.57 2.01
6600 10056 2.223947 CGACGATGGATTGATGGGTACA 60.224 50.000 0.00 0.00 0.00 2.90
6611 10067 1.465387 GACTAGCGATCGACGATGGAT 59.535 52.381 21.57 18.46 41.10 3.41
6612 10068 0.866427 GACTAGCGATCGACGATGGA 59.134 55.000 21.57 2.89 41.10 3.41
6618 10074 2.355132 TCCTTCTTGACTAGCGATCGAC 59.645 50.000 21.57 10.46 0.00 4.20
6626 10082 4.582701 ATCTGCGATCCTTCTTGACTAG 57.417 45.455 0.00 0.00 0.00 2.57
6632 10088 6.351711 CCCATTATCTATCTGCGATCCTTCTT 60.352 42.308 0.00 0.00 0.00 2.52
6645 10105 2.497675 TCTGAGCCGCCCATTATCTATC 59.502 50.000 0.00 0.00 0.00 2.08
6646 10106 2.234908 GTCTGAGCCGCCCATTATCTAT 59.765 50.000 0.00 0.00 0.00 1.98
6647 10107 1.618837 GTCTGAGCCGCCCATTATCTA 59.381 52.381 0.00 0.00 0.00 1.98
6648 10108 0.394565 GTCTGAGCCGCCCATTATCT 59.605 55.000 0.00 0.00 0.00 1.98
6664 10124 1.963338 GCTTGCTTCACGCCAGTCT 60.963 57.895 0.00 0.00 38.05 3.24
6689 10149 1.373590 AAGAACCACACACGCACACC 61.374 55.000 0.00 0.00 0.00 4.16
6690 10150 0.248054 CAAGAACCACACACGCACAC 60.248 55.000 0.00 0.00 0.00 3.82
6691 10151 0.391793 TCAAGAACCACACACGCACA 60.392 50.000 0.00 0.00 0.00 4.57
6692 10152 0.027586 GTCAAGAACCACACACGCAC 59.972 55.000 0.00 0.00 0.00 5.34
6693 10153 0.107897 AGTCAAGAACCACACACGCA 60.108 50.000 0.00 0.00 0.00 5.24
6694 10154 1.014352 AAGTCAAGAACCACACACGC 58.986 50.000 0.00 0.00 0.00 5.34
6695 10155 2.542595 GGTAAGTCAAGAACCACACACG 59.457 50.000 0.00 0.00 33.28 4.49
6696 10156 2.542595 CGGTAAGTCAAGAACCACACAC 59.457 50.000 0.00 0.00 32.55 3.82
6697 10157 2.484065 CCGGTAAGTCAAGAACCACACA 60.484 50.000 0.00 0.00 32.55 3.72
6698 10158 2.140717 CCGGTAAGTCAAGAACCACAC 58.859 52.381 0.00 0.00 32.55 3.82
6699 10159 1.764134 ACCGGTAAGTCAAGAACCACA 59.236 47.619 4.49 0.00 32.55 4.17
6700 10160 2.538512 ACCGGTAAGTCAAGAACCAC 57.461 50.000 4.49 0.00 32.55 4.16
6702 10162 2.354103 GGGTACCGGTAAGTCAAGAACC 60.354 54.545 17.78 12.49 40.86 3.62
6717 10177 4.745783 GCCACACTGGAATATTAGGGTACC 60.746 50.000 2.17 2.17 46.87 3.34
6745 10205 4.305769 TGATTTGAACTTTGAAATGGCGG 58.694 39.130 0.00 0.00 0.00 6.13
6802 10263 6.171213 AGTTAATTGGCCAGTACTGTTAGAC 58.829 40.000 21.18 9.18 0.00 2.59
6803 10264 6.368779 AGTTAATTGGCCAGTACTGTTAGA 57.631 37.500 21.18 5.53 0.00 2.10
6807 10348 5.338137 GGAGTAGTTAATTGGCCAGTACTGT 60.338 44.000 21.18 4.46 28.62 3.55
6899 10590 0.894141 ATGAGACTCTGAAGCACGCT 59.106 50.000 3.68 0.00 0.00 5.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.