Multiple sequence alignment - TraesCS2B01G379400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G379400 chr2B 100.000 5469 0 0 1 5469 542763941 542758473 0.000000e+00 10100
1 TraesCS2B01G379400 chr2B 92.740 427 27 3 632 1054 134859267 134859693 1.010000e-171 614
2 TraesCS2B01G379400 chr2B 91.745 424 31 2 632 1051 652706604 652707027 2.190000e-163 586
3 TraesCS2B01G379400 chr2A 94.349 4937 201 36 1 4882 604755092 604750179 0.000000e+00 7500
4 TraesCS2B01G379400 chr2D 93.942 4886 194 32 3 4852 460989006 460984187 0.000000e+00 7289
5 TraesCS2B01G379400 chr4A 88.731 1056 72 16 16 1054 619802866 619801841 0.000000e+00 1247
6 TraesCS2B01G379400 chr6B 83.871 527 62 13 4052 4574 92344897 92344390 1.070000e-131 481
7 TraesCS2B01G379400 chr3D 83.523 528 69 12 4052 4575 598947296 598947809 1.380000e-130 477
8 TraesCS2B01G379400 chr5B 83.302 527 65 13 4052 4574 101898772 101898265 1.070000e-126 464
9 TraesCS2B01G379400 chr7A 82.922 527 72 12 4052 4574 33836168 33836680 4.990000e-125 459
10 TraesCS2B01G379400 chr1B 81.004 458 49 18 4052 4497 641635755 641636186 4.080000e-86 329
11 TraesCS2B01G379400 chr3B 85.345 232 32 1 4052 4283 777692744 777692515 7.080000e-59 239


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G379400 chr2B 542758473 542763941 5468 True 10100 10100 100.000 1 5469 1 chr2B.!!$R1 5468
1 TraesCS2B01G379400 chr2A 604750179 604755092 4913 True 7500 7500 94.349 1 4882 1 chr2A.!!$R1 4881
2 TraesCS2B01G379400 chr2D 460984187 460989006 4819 True 7289 7289 93.942 3 4852 1 chr2D.!!$R1 4849
3 TraesCS2B01G379400 chr4A 619801841 619802866 1025 True 1247 1247 88.731 16 1054 1 chr4A.!!$R1 1038
4 TraesCS2B01G379400 chr6B 92344390 92344897 507 True 481 481 83.871 4052 4574 1 chr6B.!!$R1 522
5 TraesCS2B01G379400 chr3D 598947296 598947809 513 False 477 477 83.523 4052 4575 1 chr3D.!!$F1 523
6 TraesCS2B01G379400 chr5B 101898265 101898772 507 True 464 464 83.302 4052 4574 1 chr5B.!!$R1 522
7 TraesCS2B01G379400 chr7A 33836168 33836680 512 False 459 459 82.922 4052 4574 1 chr7A.!!$F1 522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
109 118 0.465705 TCTCTCCATCGCCCATTCAC 59.534 55.000 0.00 0.00 0.00 3.18 F
409 447 0.737367 CTCGCAGATCTGTTTCGGCA 60.737 55.000 23.38 3.94 36.74 5.69 F
1302 1407 1.077716 GGGCATTGGCGGTCTTACT 60.078 57.895 3.93 0.00 42.47 2.24 F
1704 1809 1.135944 GCGCAGAACAAGTTAGAAGGC 60.136 52.381 0.30 0.00 0.00 4.35 F
2586 2691 1.351017 TCTGAGTTGCCCCGAGAAATT 59.649 47.619 0.00 0.00 0.00 1.82 F
3540 3645 0.550914 ACAGGGAAGGAAGCAACACA 59.449 50.000 0.00 0.00 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1224 1329 0.108424 GAGACACCACTGCTAGCCTG 60.108 60.000 13.29 7.40 0.00 4.85 R
1704 1809 2.027837 CCCAATCTCTTTTGGCAAAGGG 60.028 50.000 20.18 17.16 44.04 3.95 R
2746 2851 0.388649 GCGAACGAGAGAAGCTCCAA 60.389 55.000 0.00 0.00 40.70 3.53 R
3540 3645 1.550524 TCTGCACGGAAGCTGTTATCT 59.449 47.619 0.00 0.00 35.31 1.98 R
3773 3878 0.659957 GATGATCCGAGGCTTGCAAC 59.340 55.000 0.00 0.00 0.00 4.17 R
4888 5002 0.034896 GCACCGAGGAAGGTCAGAAA 59.965 55.000 0.00 0.00 43.89 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 118 0.465705 TCTCTCCATCGCCCATTCAC 59.534 55.000 0.00 0.00 0.00 3.18
219 228 2.027625 GAAGACGCGGTGAGTTGGG 61.028 63.158 12.47 0.00 0.00 4.12
220 229 4.681978 AGACGCGGTGAGTTGGGC 62.682 66.667 12.47 0.00 0.00 5.36
275 296 0.843984 ATTATTAGCCCACCGGTGCT 59.156 50.000 29.75 25.28 41.57 4.40
287 308 4.371975 GGTGCTCCGTGCTGTTTA 57.628 55.556 0.00 0.00 43.37 2.01
376 414 1.743252 CTCTGGGCGGAGTGAAAGC 60.743 63.158 0.00 0.00 0.00 3.51
409 447 0.737367 CTCGCAGATCTGTTTCGGCA 60.737 55.000 23.38 3.94 36.74 5.69
447 505 1.229658 CTGTTCCTGGGTCCCTCCT 60.230 63.158 10.00 0.00 36.25 3.69
453 511 1.383248 CTGGGTCCCTCCTTCCGAT 60.383 63.158 10.00 0.00 36.25 4.18
716 804 4.271291 GCTCCTGAATTCGATTCTTGGTAC 59.729 45.833 0.04 0.00 39.96 3.34
717 805 5.665459 CTCCTGAATTCGATTCTTGGTACT 58.335 41.667 0.04 0.00 39.96 2.73
718 806 6.683110 GCTCCTGAATTCGATTCTTGGTACTA 60.683 42.308 0.04 0.00 39.96 1.82
719 807 6.570692 TCCTGAATTCGATTCTTGGTACTAC 58.429 40.000 0.04 0.00 39.96 2.73
720 808 5.753921 CCTGAATTCGATTCTTGGTACTACC 59.246 44.000 0.04 0.00 39.96 3.18
721 809 6.288941 TGAATTCGATTCTTGGTACTACCA 57.711 37.500 3.57 3.57 42.02 3.25
752 852 6.513180 TCATTCCTATCTTGGATTGTCGTAC 58.487 40.000 0.00 0.00 38.16 3.67
825 929 3.133542 TCCTGCAGATAGACAGATGGTTG 59.866 47.826 17.39 0.00 35.90 3.77
935 1040 2.401766 CCACGGAGATGCACAAGGC 61.402 63.158 0.00 0.00 45.13 4.35
949 1054 3.138304 CACAAGGCTACAGCAGTTGTTA 58.862 45.455 14.99 0.00 43.04 2.41
1172 1277 1.355720 CAACTGGAACCCCAAGGATCT 59.644 52.381 0.00 0.00 42.98 2.75
1221 1326 1.820481 CTCCTCCTCCTCGTCGTCC 60.820 68.421 0.00 0.00 0.00 4.79
1224 1329 1.820481 CTCCTCCTCGTCGTCCTCC 60.820 68.421 0.00 0.00 0.00 4.30
1302 1407 1.077716 GGGCATTGGCGGTCTTACT 60.078 57.895 3.93 0.00 42.47 2.24
1305 1410 1.448985 GCATTGGCGGTCTTACTGAA 58.551 50.000 0.00 0.00 0.00 3.02
1323 1428 2.946329 TGAACTGACTAGCCTCGATCTC 59.054 50.000 0.00 0.00 0.00 2.75
1381 1486 4.590222 AGATTGGGAATTGCTCAAAACTGT 59.410 37.500 0.00 0.00 41.13 3.55
1698 1803 1.871039 GGTCTTGCGCAGAACAAGTTA 59.129 47.619 21.17 0.00 43.97 2.24
1704 1809 1.135944 GCGCAGAACAAGTTAGAAGGC 60.136 52.381 0.30 0.00 0.00 4.35
1881 1986 6.915843 CGGCAATAATTGGGAACATTACTTAC 59.084 38.462 0.00 0.00 42.32 2.34
1911 2016 9.430623 GAGAAGCTATATCTTTACAGGAATTCC 57.569 37.037 17.31 17.31 0.00 3.01
2179 2284 8.797958 TCAGTACATGACCAAGCTAATCCAGC 62.798 46.154 0.00 0.00 41.23 4.85
2265 2370 3.165071 GTGGGTGGTGGATTTCTCAAAT 58.835 45.455 0.00 0.00 0.00 2.32
2319 2424 5.938125 TCTTTGTAGGCAGTCAAACCTTATC 59.062 40.000 0.00 0.00 37.50 1.75
2344 2449 3.350219 TGAATCTGGGGTCTAACAAGC 57.650 47.619 0.00 0.00 0.00 4.01
2475 2580 5.403466 GGTGAATTTGACAACAATTGAGCTC 59.597 40.000 13.59 6.82 35.85 4.09
2514 2619 2.343625 GGCCCTATTCCTCCTCAGATT 58.656 52.381 0.00 0.00 0.00 2.40
2586 2691 1.351017 TCTGAGTTGCCCCGAGAAATT 59.649 47.619 0.00 0.00 0.00 1.82
2622 2727 6.414408 AAGCTTGTTGTCTTCAATATCTCG 57.586 37.500 0.00 0.00 35.92 4.04
2650 2755 1.981495 GGCTAGGAGGAAGCATACCAT 59.019 52.381 0.00 0.00 41.93 3.55
2673 2778 6.480524 TTGGAGATCTTCAATTGTACAACG 57.519 37.500 12.71 5.46 0.00 4.10
2745 2850 2.300152 TGAAGTTGGTAGACTGCCTCAG 59.700 50.000 11.19 0.00 37.52 3.35
2776 2881 4.135306 TCTCTCGTTCGCTGATAATAGGT 58.865 43.478 0.00 0.00 0.00 3.08
2952 3057 4.566488 GGGAATATACCATCAGAGCTTGGG 60.566 50.000 7.09 0.00 37.32 4.12
3036 3141 7.023575 CAGATACATTTGTAAACCTGTCAAGC 58.976 38.462 0.00 0.00 33.76 4.01
3081 3186 5.517322 ACAATAATCTCACCGGTACTCTC 57.483 43.478 6.87 0.00 0.00 3.20
3540 3645 0.550914 ACAGGGAAGGAAGCAACACA 59.449 50.000 0.00 0.00 0.00 3.72
3773 3878 3.243636 GGGCTTTCATACTTGCATCATGG 60.244 47.826 0.00 0.00 0.00 3.66
3897 4002 2.079925 GACATGCCAGTCTCAAAGTCC 58.920 52.381 0.00 0.00 35.65 3.85
4270 4379 5.477291 TCCAGGGATATTCGACAGTAATCTC 59.523 44.000 0.00 0.00 0.00 2.75
4274 4383 7.065923 CAGGGATATTCGACAGTAATCTCGATA 59.934 40.741 0.00 0.00 34.50 2.92
4414 4523 2.694616 AAAGATAGGGCCCGGGCA 60.695 61.111 44.46 27.31 44.11 5.36
4429 4538 2.734723 GCAAGCTCTGCGTCGTCA 60.735 61.111 5.35 0.00 42.37 4.35
4548 4660 0.684153 CCTGTTGCTTATGGTGGGGG 60.684 60.000 0.00 0.00 0.00 5.40
4631 4744 5.598416 CTGATAACAGTGGGATAGTGTCA 57.402 43.478 0.00 0.00 42.09 3.58
4632 4745 5.977635 CTGATAACAGTGGGATAGTGTCAA 58.022 41.667 0.00 0.00 42.09 3.18
4692 4806 5.014858 CCAGACAGTAACCCTGAGTAGTTA 58.985 45.833 0.00 0.00 44.49 2.24
4695 4809 5.715753 AGACAGTAACCCTGAGTAGTTAAGG 59.284 44.000 0.00 0.00 44.49 2.69
4696 4810 5.400870 ACAGTAACCCTGAGTAGTTAAGGT 58.599 41.667 0.00 0.00 44.49 3.50
4781 4895 9.471702 AGATTTCTCACTGTTGGAATATGAATT 57.528 29.630 0.00 0.00 0.00 2.17
4833 4947 1.069823 ACTTGTGACACTCTCAGCTGG 59.930 52.381 15.13 4.77 0.00 4.85
4845 4959 4.187694 CTCTCAGCTGGGTTTTATCTGAC 58.812 47.826 14.66 0.00 31.36 3.51
4865 4979 2.035832 ACCTTCCTCGGTGCAATTTTTG 59.964 45.455 0.00 0.00 35.52 2.44
4869 4983 3.745799 TCCTCGGTGCAATTTTTGTCTA 58.254 40.909 0.00 0.00 0.00 2.59
4878 4992 7.646130 CGGTGCAATTTTTGTCTAAACTTTCTA 59.354 33.333 0.00 0.00 0.00 2.10
4879 4993 8.968242 GGTGCAATTTTTGTCTAAACTTTCTAG 58.032 33.333 0.00 0.00 0.00 2.43
4880 4994 8.480066 GTGCAATTTTTGTCTAAACTTTCTAGC 58.520 33.333 0.00 0.00 0.00 3.42
4881 4995 8.413229 TGCAATTTTTGTCTAAACTTTCTAGCT 58.587 29.630 0.00 0.00 0.00 3.32
4882 4996 8.694394 GCAATTTTTGTCTAAACTTTCTAGCTG 58.306 33.333 0.00 0.00 0.00 4.24
4883 4997 9.950680 CAATTTTTGTCTAAACTTTCTAGCTGA 57.049 29.630 0.00 0.00 0.00 4.26
4885 4999 8.732746 TTTTTGTCTAAACTTTCTAGCTGAGT 57.267 30.769 0.00 0.00 0.00 3.41
4886 5000 8.732746 TTTTGTCTAAACTTTCTAGCTGAGTT 57.267 30.769 0.00 0.00 35.27 3.01
4887 5001 8.732746 TTTGTCTAAACTTTCTAGCTGAGTTT 57.267 30.769 17.46 17.46 43.68 2.66
4888 5002 8.732746 TTGTCTAAACTTTCTAGCTGAGTTTT 57.267 30.769 18.12 5.37 42.03 2.43
4889 5003 8.732746 TGTCTAAACTTTCTAGCTGAGTTTTT 57.267 30.769 18.12 5.79 42.03 1.94
4906 5020 2.543777 TTTTCTGACCTTCCTCGGTG 57.456 50.000 0.00 0.00 37.42 4.94
4907 5021 0.034896 TTTCTGACCTTCCTCGGTGC 59.965 55.000 0.00 0.00 37.42 5.01
4908 5022 1.118965 TTCTGACCTTCCTCGGTGCA 61.119 55.000 0.00 0.00 37.42 4.57
4909 5023 0.904865 TCTGACCTTCCTCGGTGCAT 60.905 55.000 0.00 0.00 37.42 3.96
4910 5024 0.460987 CTGACCTTCCTCGGTGCATC 60.461 60.000 0.00 0.00 37.42 3.91
4911 5025 0.904865 TGACCTTCCTCGGTGCATCT 60.905 55.000 0.00 0.00 37.42 2.90
4912 5026 0.250513 GACCTTCCTCGGTGCATCTT 59.749 55.000 0.00 0.00 37.42 2.40
4913 5027 0.693049 ACCTTCCTCGGTGCATCTTT 59.307 50.000 0.00 0.00 35.52 2.52
4914 5028 1.073923 ACCTTCCTCGGTGCATCTTTT 59.926 47.619 0.00 0.00 35.52 2.27
4915 5029 2.304761 ACCTTCCTCGGTGCATCTTTTA 59.695 45.455 0.00 0.00 35.52 1.52
4916 5030 3.054361 ACCTTCCTCGGTGCATCTTTTAT 60.054 43.478 0.00 0.00 35.52 1.40
4917 5031 3.561725 CCTTCCTCGGTGCATCTTTTATC 59.438 47.826 0.00 0.00 0.00 1.75
4918 5032 4.446371 CTTCCTCGGTGCATCTTTTATCT 58.554 43.478 0.00 0.00 0.00 1.98
4919 5033 3.797039 TCCTCGGTGCATCTTTTATCTG 58.203 45.455 0.00 0.00 0.00 2.90
4920 5034 3.450817 TCCTCGGTGCATCTTTTATCTGA 59.549 43.478 0.00 0.00 0.00 3.27
4921 5035 4.081142 TCCTCGGTGCATCTTTTATCTGAA 60.081 41.667 0.00 0.00 0.00 3.02
4922 5036 4.034510 CCTCGGTGCATCTTTTATCTGAAC 59.965 45.833 0.00 0.00 0.00 3.18
4923 5037 4.832248 TCGGTGCATCTTTTATCTGAACT 58.168 39.130 0.00 0.00 0.00 3.01
4924 5038 5.245531 TCGGTGCATCTTTTATCTGAACTT 58.754 37.500 0.00 0.00 0.00 2.66
4925 5039 5.705441 TCGGTGCATCTTTTATCTGAACTTT 59.295 36.000 0.00 0.00 0.00 2.66
4926 5040 6.024049 CGGTGCATCTTTTATCTGAACTTTC 58.976 40.000 0.00 0.00 0.00 2.62
4927 5041 6.128172 CGGTGCATCTTTTATCTGAACTTTCT 60.128 38.462 0.00 0.00 0.00 2.52
4928 5042 7.064609 CGGTGCATCTTTTATCTGAACTTTCTA 59.935 37.037 0.00 0.00 0.00 2.10
4929 5043 8.730680 GGTGCATCTTTTATCTGAACTTTCTAA 58.269 33.333 0.00 0.00 0.00 2.10
4938 5052 8.788325 TTATCTGAACTTTCTAAACTTAGGGC 57.212 34.615 0.00 0.00 0.00 5.19
4939 5053 6.182507 TCTGAACTTTCTAAACTTAGGGCA 57.817 37.500 0.00 0.00 0.00 5.36
4940 5054 6.597562 TCTGAACTTTCTAAACTTAGGGCAA 58.402 36.000 0.00 0.00 0.00 4.52
4941 5055 6.485648 TCTGAACTTTCTAAACTTAGGGCAAC 59.514 38.462 0.00 0.00 0.00 4.17
4942 5056 6.362248 TGAACTTTCTAAACTTAGGGCAACT 58.638 36.000 0.00 0.00 0.00 3.16
4943 5057 6.831868 TGAACTTTCTAAACTTAGGGCAACTT 59.168 34.615 0.00 0.00 0.00 2.66
4944 5058 6.879276 ACTTTCTAAACTTAGGGCAACTTC 57.121 37.500 0.00 0.00 0.00 3.01
4945 5059 6.362248 ACTTTCTAAACTTAGGGCAACTTCA 58.638 36.000 0.00 0.00 0.00 3.02
4946 5060 6.486993 ACTTTCTAAACTTAGGGCAACTTCAG 59.513 38.462 0.00 0.00 0.00 3.02
4947 5061 5.818678 TCTAAACTTAGGGCAACTTCAGA 57.181 39.130 0.00 0.00 0.00 3.27
4948 5062 6.182507 TCTAAACTTAGGGCAACTTCAGAA 57.817 37.500 0.00 0.00 0.00 3.02
4949 5063 6.597562 TCTAAACTTAGGGCAACTTCAGAAA 58.402 36.000 0.00 0.00 0.00 2.52
4950 5064 5.774498 AAACTTAGGGCAACTTCAGAAAG 57.226 39.130 0.00 0.00 38.54 2.62
4951 5065 4.706842 ACTTAGGGCAACTTCAGAAAGA 57.293 40.909 0.00 0.00 36.30 2.52
4952 5066 4.390264 ACTTAGGGCAACTTCAGAAAGAC 58.610 43.478 0.00 0.00 36.30 3.01
4953 5067 4.141482 ACTTAGGGCAACTTCAGAAAGACA 60.141 41.667 0.00 0.00 36.30 3.41
4954 5068 2.576615 AGGGCAACTTCAGAAAGACAC 58.423 47.619 0.00 0.00 36.30 3.67
4955 5069 1.264288 GGGCAACTTCAGAAAGACACG 59.736 52.381 0.00 0.00 36.30 4.49
4956 5070 1.264288 GGCAACTTCAGAAAGACACGG 59.736 52.381 0.00 0.00 36.30 4.94
4957 5071 1.940613 GCAACTTCAGAAAGACACGGT 59.059 47.619 0.00 0.00 36.30 4.83
4958 5072 2.354821 GCAACTTCAGAAAGACACGGTT 59.645 45.455 0.00 0.00 36.30 4.44
4959 5073 3.546218 GCAACTTCAGAAAGACACGGTTC 60.546 47.826 0.00 0.00 36.30 3.62
4960 5074 3.821421 ACTTCAGAAAGACACGGTTCT 57.179 42.857 0.00 0.00 36.30 3.01
4964 5078 2.135933 CAGAAAGACACGGTTCTGTCC 58.864 52.381 5.45 0.00 43.74 4.02
4972 5086 2.612200 CGGTTCTGTCCGCTTTTCA 58.388 52.632 0.00 0.00 43.96 2.69
4973 5087 1.156736 CGGTTCTGTCCGCTTTTCAT 58.843 50.000 0.00 0.00 43.96 2.57
4974 5088 1.128692 CGGTTCTGTCCGCTTTTCATC 59.871 52.381 0.00 0.00 43.96 2.92
4975 5089 1.468914 GGTTCTGTCCGCTTTTCATCC 59.531 52.381 0.00 0.00 0.00 3.51
4976 5090 2.427506 GTTCTGTCCGCTTTTCATCCT 58.572 47.619 0.00 0.00 0.00 3.24
4977 5091 2.814336 GTTCTGTCCGCTTTTCATCCTT 59.186 45.455 0.00 0.00 0.00 3.36
4978 5092 3.140325 TCTGTCCGCTTTTCATCCTTT 57.860 42.857 0.00 0.00 0.00 3.11
4979 5093 3.486383 TCTGTCCGCTTTTCATCCTTTT 58.514 40.909 0.00 0.00 0.00 2.27
4980 5094 3.253188 TCTGTCCGCTTTTCATCCTTTTG 59.747 43.478 0.00 0.00 0.00 2.44
4981 5095 2.295909 TGTCCGCTTTTCATCCTTTTGG 59.704 45.455 0.00 0.00 42.21 3.28
4982 5096 1.892474 TCCGCTTTTCATCCTTTTGGG 59.108 47.619 0.00 0.00 40.87 4.12
4983 5097 1.618343 CCGCTTTTCATCCTTTTGGGT 59.382 47.619 0.00 0.00 40.87 4.51
4984 5098 2.037121 CCGCTTTTCATCCTTTTGGGTT 59.963 45.455 0.00 0.00 40.87 4.11
4985 5099 3.257127 CCGCTTTTCATCCTTTTGGGTTA 59.743 43.478 0.00 0.00 40.87 2.85
4986 5100 4.485163 CGCTTTTCATCCTTTTGGGTTAG 58.515 43.478 0.00 0.00 40.87 2.34
4987 5101 4.245660 GCTTTTCATCCTTTTGGGTTAGC 58.754 43.478 0.00 0.00 40.87 3.09
4988 5102 4.021104 GCTTTTCATCCTTTTGGGTTAGCT 60.021 41.667 0.00 0.00 40.87 3.32
4989 5103 5.467035 TTTTCATCCTTTTGGGTTAGCTG 57.533 39.130 0.00 0.00 40.87 4.24
4990 5104 4.380843 TTCATCCTTTTGGGTTAGCTGA 57.619 40.909 0.00 0.00 40.87 4.26
4991 5105 4.380843 TCATCCTTTTGGGTTAGCTGAA 57.619 40.909 0.00 0.00 40.87 3.02
4992 5106 4.335416 TCATCCTTTTGGGTTAGCTGAAG 58.665 43.478 0.00 0.00 40.87 3.02
4993 5107 3.154827 TCCTTTTGGGTTAGCTGAAGG 57.845 47.619 0.00 0.00 40.87 3.46
4994 5108 1.546029 CCTTTTGGGTTAGCTGAAGGC 59.454 52.381 0.00 0.00 37.26 4.35
4995 5109 4.026760 CCTTTTGGGTTAGCTGAAGGCG 62.027 54.545 0.00 0.00 40.22 5.52
5003 5117 3.435186 GCTGAAGGCGCCTTGTCC 61.435 66.667 44.71 29.96 36.26 4.02
5004 5118 2.032528 CTGAAGGCGCCTTGTCCA 59.967 61.111 44.71 32.63 36.26 4.02
5005 5119 2.032528 TGAAGGCGCCTTGTCCAG 59.967 61.111 44.71 0.00 36.26 3.86
5006 5120 3.435186 GAAGGCGCCTTGTCCAGC 61.435 66.667 44.71 25.59 36.26 4.85
5007 5121 3.909086 GAAGGCGCCTTGTCCAGCT 62.909 63.158 44.71 20.53 36.26 4.24
5008 5122 4.711949 AGGCGCCTTGTCCAGCTG 62.712 66.667 27.08 6.78 0.00 4.24
5009 5123 4.704833 GGCGCCTTGTCCAGCTGA 62.705 66.667 22.15 0.00 0.00 4.26
5010 5124 3.123620 GCGCCTTGTCCAGCTGAG 61.124 66.667 17.39 3.96 0.00 3.35
5011 5125 2.345244 CGCCTTGTCCAGCTGAGT 59.655 61.111 17.39 0.00 0.00 3.41
5012 5126 1.739562 CGCCTTGTCCAGCTGAGTC 60.740 63.158 17.39 5.55 0.00 3.36
5013 5127 1.376553 GCCTTGTCCAGCTGAGTCC 60.377 63.158 17.39 0.00 0.00 3.85
5014 5128 1.079543 CCTTGTCCAGCTGAGTCCG 60.080 63.158 17.39 0.00 0.00 4.79
5015 5129 1.739562 CTTGTCCAGCTGAGTCCGC 60.740 63.158 17.39 0.00 0.00 5.54
5016 5130 3.240134 TTGTCCAGCTGAGTCCGCC 62.240 63.158 17.39 0.00 0.00 6.13
5017 5131 4.459089 GTCCAGCTGAGTCCGCCC 62.459 72.222 17.39 0.00 0.00 6.13
5019 5133 4.020617 CCAGCTGAGTCCGCCCAA 62.021 66.667 17.39 0.00 0.00 4.12
5020 5134 2.032528 CAGCTGAGTCCGCCCAAA 59.967 61.111 8.42 0.00 0.00 3.28
5021 5135 2.032681 AGCTGAGTCCGCCCAAAC 59.967 61.111 2.56 0.00 0.00 2.93
5022 5136 3.056328 GCTGAGTCCGCCCAAACC 61.056 66.667 0.00 0.00 0.00 3.27
5023 5137 2.750350 CTGAGTCCGCCCAAACCT 59.250 61.111 0.00 0.00 0.00 3.50
5024 5138 1.672356 CTGAGTCCGCCCAAACCTG 60.672 63.158 0.00 0.00 0.00 4.00
5025 5139 2.359975 GAGTCCGCCCAAACCTGG 60.360 66.667 0.00 0.00 43.10 4.45
5026 5140 3.175710 AGTCCGCCCAAACCTGGT 61.176 61.111 0.00 0.00 41.72 4.00
5027 5141 2.203437 GTCCGCCCAAACCTGGTT 60.203 61.111 6.18 6.18 41.72 3.67
5028 5142 2.203422 TCCGCCCAAACCTGGTTG 60.203 61.111 13.79 7.38 41.72 3.77
5029 5143 3.302344 CCGCCCAAACCTGGTTGG 61.302 66.667 13.79 15.48 46.57 3.77
5055 5169 3.202001 ATGGGCCGACGCATTTCG 61.202 61.111 0.00 0.00 46.48 3.46
5064 5178 2.474266 CGCATTTCGTCCGTGTGG 59.526 61.111 0.00 0.00 0.00 4.17
5065 5179 2.175811 GCATTTCGTCCGTGTGGC 59.824 61.111 0.00 0.00 34.14 5.01
5066 5180 2.325082 GCATTTCGTCCGTGTGGCT 61.325 57.895 0.00 0.00 34.14 4.75
5067 5181 1.497278 CATTTCGTCCGTGTGGCTG 59.503 57.895 0.00 0.00 34.14 4.85
5068 5182 0.948623 CATTTCGTCCGTGTGGCTGA 60.949 55.000 0.00 0.00 34.14 4.26
5069 5183 0.250124 ATTTCGTCCGTGTGGCTGAA 60.250 50.000 0.00 0.00 34.14 3.02
5070 5184 0.250124 TTTCGTCCGTGTGGCTGAAT 60.250 50.000 0.00 0.00 31.13 2.57
5071 5185 0.250124 TTCGTCCGTGTGGCTGAATT 60.250 50.000 0.00 0.00 34.14 2.17
5072 5186 0.250124 TCGTCCGTGTGGCTGAATTT 60.250 50.000 0.00 0.00 34.14 1.82
5073 5187 0.591170 CGTCCGTGTGGCTGAATTTT 59.409 50.000 0.00 0.00 34.14 1.82
5074 5188 1.001815 CGTCCGTGTGGCTGAATTTTT 60.002 47.619 0.00 0.00 34.14 1.94
5075 5189 2.393764 GTCCGTGTGGCTGAATTTTTG 58.606 47.619 0.00 0.00 34.14 2.44
5076 5190 1.339610 TCCGTGTGGCTGAATTTTTGG 59.660 47.619 0.00 0.00 34.14 3.28
5077 5191 1.139163 CGTGTGGCTGAATTTTTGGC 58.861 50.000 0.00 0.00 0.00 4.52
5078 5192 1.537776 CGTGTGGCTGAATTTTTGGCA 60.538 47.619 0.00 0.00 0.00 4.92
5079 5193 2.559440 GTGTGGCTGAATTTTTGGCAA 58.441 42.857 0.00 0.00 37.98 4.52
5080 5194 2.545106 GTGTGGCTGAATTTTTGGCAAG 59.455 45.455 0.00 0.00 37.98 4.01
5081 5195 1.532437 GTGGCTGAATTTTTGGCAAGC 59.468 47.619 0.00 0.00 37.98 4.01
5082 5196 1.140452 TGGCTGAATTTTTGGCAAGCA 59.860 42.857 0.00 0.00 33.38 3.91
5083 5197 2.220313 GGCTGAATTTTTGGCAAGCAA 58.780 42.857 0.00 0.00 0.00 3.91
5084 5198 2.617774 GGCTGAATTTTTGGCAAGCAAA 59.382 40.909 0.00 0.00 0.00 3.68
5085 5199 3.253921 GGCTGAATTTTTGGCAAGCAAAT 59.746 39.130 0.00 1.91 0.00 2.32
5086 5200 4.261698 GGCTGAATTTTTGGCAAGCAAATT 60.262 37.500 17.93 17.93 33.70 1.82
5087 5201 5.048852 GGCTGAATTTTTGGCAAGCAAATTA 60.049 36.000 17.91 9.27 31.66 1.40
5088 5202 6.437094 GCTGAATTTTTGGCAAGCAAATTAA 58.563 32.000 17.91 12.38 31.66 1.40
5089 5203 6.916932 GCTGAATTTTTGGCAAGCAAATTAAA 59.083 30.769 17.91 7.74 31.66 1.52
5090 5204 7.096518 GCTGAATTTTTGGCAAGCAAATTAAAC 60.097 33.333 17.91 9.86 31.66 2.01
5091 5205 7.199078 TGAATTTTTGGCAAGCAAATTAAACC 58.801 30.769 17.91 9.60 31.66 3.27
5092 5206 6.957920 ATTTTTGGCAAGCAAATTAAACCT 57.042 29.167 0.00 0.00 0.00 3.50
5093 5207 8.457238 AATTTTTGGCAAGCAAATTAAACCTA 57.543 26.923 16.90 0.00 30.09 3.08
5094 5208 7.865706 TTTTTGGCAAGCAAATTAAACCTAA 57.134 28.000 0.00 0.00 0.00 2.69
5095 5209 7.865706 TTTTGGCAAGCAAATTAAACCTAAA 57.134 28.000 0.00 0.00 0.00 1.85
5096 5210 8.457238 TTTTGGCAAGCAAATTAAACCTAAAT 57.543 26.923 0.00 0.00 0.00 1.40
5097 5211 8.457238 TTTGGCAAGCAAATTAAACCTAAATT 57.543 26.923 0.00 0.00 0.00 1.82
5098 5212 9.561069 TTTGGCAAGCAAATTAAACCTAAATTA 57.439 25.926 0.00 0.00 0.00 1.40
5099 5213 8.770438 TGGCAAGCAAATTAAACCTAAATTAG 57.230 30.769 0.00 0.00 0.00 1.73
5118 5232 4.390048 GCCAAAGGCCGTAGTTCA 57.610 55.556 0.00 0.00 44.06 3.18
5119 5233 2.868253 GCCAAAGGCCGTAGTTCAT 58.132 52.632 0.00 0.00 44.06 2.57
5120 5234 0.451783 GCCAAAGGCCGTAGTTCATG 59.548 55.000 0.00 0.00 44.06 3.07
5121 5235 0.451783 CCAAAGGCCGTAGTTCATGC 59.548 55.000 0.00 0.00 0.00 4.06
5122 5236 0.451783 CAAAGGCCGTAGTTCATGCC 59.548 55.000 0.00 0.00 44.35 4.40
5124 5238 2.895372 GGCCGTAGTTCATGCCGG 60.895 66.667 0.00 0.00 43.22 6.13
5125 5239 2.125269 GCCGTAGTTCATGCCGGT 60.125 61.111 1.90 0.00 42.36 5.28
5126 5240 1.142314 GCCGTAGTTCATGCCGGTA 59.858 57.895 1.90 0.00 42.36 4.02
5127 5241 1.149964 GCCGTAGTTCATGCCGGTAC 61.150 60.000 1.90 0.00 42.36 3.34
5128 5242 0.173935 CCGTAGTTCATGCCGGTACA 59.826 55.000 1.90 0.00 35.78 2.90
5129 5243 1.274596 CGTAGTTCATGCCGGTACAC 58.725 55.000 1.90 0.00 0.00 2.90
5130 5244 1.135199 CGTAGTTCATGCCGGTACACT 60.135 52.381 1.90 4.66 0.00 3.55
5131 5245 2.673043 CGTAGTTCATGCCGGTACACTT 60.673 50.000 1.90 0.00 0.00 3.16
5132 5246 1.808411 AGTTCATGCCGGTACACTTG 58.192 50.000 1.90 0.00 0.00 3.16
5133 5247 0.168128 GTTCATGCCGGTACACTTGC 59.832 55.000 1.90 0.00 0.00 4.01
5134 5248 0.958382 TTCATGCCGGTACACTTGCC 60.958 55.000 1.90 0.00 0.00 4.52
5135 5249 1.673993 CATGCCGGTACACTTGCCA 60.674 57.895 1.90 0.00 0.00 4.92
5136 5250 1.074072 ATGCCGGTACACTTGCCAA 59.926 52.632 1.90 0.00 0.00 4.52
5137 5251 1.241315 ATGCCGGTACACTTGCCAAC 61.241 55.000 1.90 0.00 0.00 3.77
5138 5252 2.622962 GCCGGTACACTTGCCAACC 61.623 63.158 1.90 0.00 0.00 3.77
5139 5253 1.072505 CCGGTACACTTGCCAACCT 59.927 57.895 0.00 0.00 0.00 3.50
5140 5254 0.536460 CCGGTACACTTGCCAACCTT 60.536 55.000 0.00 0.00 0.00 3.50
5141 5255 0.872388 CGGTACACTTGCCAACCTTC 59.128 55.000 0.00 0.00 0.00 3.46
5142 5256 1.812324 CGGTACACTTGCCAACCTTCA 60.812 52.381 0.00 0.00 0.00 3.02
5143 5257 2.514803 GGTACACTTGCCAACCTTCAT 58.485 47.619 0.00 0.00 0.00 2.57
5144 5258 2.488153 GGTACACTTGCCAACCTTCATC 59.512 50.000 0.00 0.00 0.00 2.92
5145 5259 2.664402 ACACTTGCCAACCTTCATCT 57.336 45.000 0.00 0.00 0.00 2.90
5146 5260 2.233271 ACACTTGCCAACCTTCATCTG 58.767 47.619 0.00 0.00 0.00 2.90
5147 5261 1.542915 CACTTGCCAACCTTCATCTGG 59.457 52.381 0.00 0.00 0.00 3.86
5151 5265 2.877975 CCAACCTTCATCTGGCCAG 58.122 57.895 27.87 27.87 0.00 4.85
5152 5266 1.318158 CCAACCTTCATCTGGCCAGC 61.318 60.000 28.91 0.00 0.00 4.85
5153 5267 1.000396 AACCTTCATCTGGCCAGCC 60.000 57.895 28.91 0.38 0.00 4.85
5154 5268 2.123982 CCTTCATCTGGCCAGCCC 60.124 66.667 28.91 0.00 34.56 5.19
5155 5269 2.687610 CCTTCATCTGGCCAGCCCT 61.688 63.158 28.91 12.12 34.56 5.19
5156 5270 1.153005 CTTCATCTGGCCAGCCCTC 60.153 63.158 28.91 0.00 34.56 4.30
5157 5271 1.617536 TTCATCTGGCCAGCCCTCT 60.618 57.895 28.91 6.82 34.56 3.69
5158 5272 1.210204 TTCATCTGGCCAGCCCTCTT 61.210 55.000 28.91 5.16 34.56 2.85
5159 5273 1.153005 CATCTGGCCAGCCCTCTTC 60.153 63.158 28.91 0.00 34.56 2.87
5160 5274 2.739996 ATCTGGCCAGCCCTCTTCG 61.740 63.158 28.91 1.59 34.56 3.79
5167 5281 2.977178 AGCCCTCTTCGCTGACTG 59.023 61.111 0.00 0.00 34.56 3.51
5168 5282 1.910772 AGCCCTCTTCGCTGACTGT 60.911 57.895 0.00 0.00 34.56 3.55
5169 5283 0.612174 AGCCCTCTTCGCTGACTGTA 60.612 55.000 0.00 0.00 34.56 2.74
5170 5284 0.461961 GCCCTCTTCGCTGACTGTAT 59.538 55.000 0.00 0.00 0.00 2.29
5171 5285 1.804372 GCCCTCTTCGCTGACTGTATG 60.804 57.143 0.00 0.00 0.00 2.39
5172 5286 1.202463 CCCTCTTCGCTGACTGTATGG 60.202 57.143 0.00 0.00 0.00 2.74
5173 5287 1.565305 CTCTTCGCTGACTGTATGGC 58.435 55.000 0.00 0.00 0.00 4.40
5174 5288 0.175760 TCTTCGCTGACTGTATGGCC 59.824 55.000 0.00 0.00 0.00 5.36
5175 5289 0.811616 CTTCGCTGACTGTATGGCCC 60.812 60.000 0.00 0.00 0.00 5.80
5176 5290 2.572095 TTCGCTGACTGTATGGCCCG 62.572 60.000 0.00 0.00 0.00 6.13
5177 5291 2.897350 GCTGACTGTATGGCCCGC 60.897 66.667 0.00 0.00 0.00 6.13
5178 5292 2.903357 CTGACTGTATGGCCCGCT 59.097 61.111 0.00 0.00 0.00 5.52
5179 5293 1.522355 CTGACTGTATGGCCCGCTG 60.522 63.158 0.00 0.00 0.00 5.18
5180 5294 2.897350 GACTGTATGGCCCGCTGC 60.897 66.667 0.00 0.00 40.16 5.25
5181 5295 3.391665 GACTGTATGGCCCGCTGCT 62.392 63.158 0.00 0.00 40.92 4.24
5182 5296 2.590007 CTGTATGGCCCGCTGCTC 60.590 66.667 0.00 0.00 40.92 4.26
5183 5297 4.175337 TGTATGGCCCGCTGCTCC 62.175 66.667 0.00 0.00 40.92 4.70
5194 5308 4.749310 CTGCTCCGGCGTCTGCTT 62.749 66.667 6.01 0.00 42.25 3.91
5195 5309 4.742201 TGCTCCGGCGTCTGCTTC 62.742 66.667 6.01 0.00 42.25 3.86
5196 5310 4.443266 GCTCCGGCGTCTGCTTCT 62.443 66.667 6.01 0.00 42.25 2.85
5197 5311 2.262915 CTCCGGCGTCTGCTTCTT 59.737 61.111 6.01 0.00 42.25 2.52
5198 5312 1.511305 CTCCGGCGTCTGCTTCTTA 59.489 57.895 6.01 0.00 42.25 2.10
5199 5313 0.526524 CTCCGGCGTCTGCTTCTTAG 60.527 60.000 6.01 0.00 42.25 2.18
5200 5314 1.519455 CCGGCGTCTGCTTCTTAGG 60.519 63.158 6.01 0.00 42.25 2.69
5201 5315 1.215647 CGGCGTCTGCTTCTTAGGT 59.784 57.895 0.00 0.00 42.25 3.08
5202 5316 0.389948 CGGCGTCTGCTTCTTAGGTT 60.390 55.000 0.00 0.00 42.25 3.50
5203 5317 1.079503 GGCGTCTGCTTCTTAGGTTG 58.920 55.000 0.00 0.00 42.25 3.77
5204 5318 0.444260 GCGTCTGCTTCTTAGGTTGC 59.556 55.000 0.00 0.00 38.39 4.17
5205 5319 1.941668 GCGTCTGCTTCTTAGGTTGCT 60.942 52.381 0.00 0.00 38.39 3.91
5206 5320 2.417719 CGTCTGCTTCTTAGGTTGCTT 58.582 47.619 0.00 0.00 0.00 3.91
5207 5321 2.413453 CGTCTGCTTCTTAGGTTGCTTC 59.587 50.000 0.00 0.00 0.00 3.86
5208 5322 3.669536 GTCTGCTTCTTAGGTTGCTTCT 58.330 45.455 0.00 0.00 0.00 2.85
5209 5323 4.068599 GTCTGCTTCTTAGGTTGCTTCTT 58.931 43.478 0.00 0.00 0.00 2.52
5210 5324 4.067896 TCTGCTTCTTAGGTTGCTTCTTG 58.932 43.478 0.00 0.00 0.00 3.02
5211 5325 3.817647 CTGCTTCTTAGGTTGCTTCTTGT 59.182 43.478 0.00 0.00 0.00 3.16
5212 5326 3.565482 TGCTTCTTAGGTTGCTTCTTGTG 59.435 43.478 0.00 0.00 0.00 3.33
5213 5327 3.610349 GCTTCTTAGGTTGCTTCTTGTGC 60.610 47.826 0.00 0.00 0.00 4.57
5214 5328 3.207265 TCTTAGGTTGCTTCTTGTGCA 57.793 42.857 0.00 0.00 38.80 4.57
5215 5329 2.878406 TCTTAGGTTGCTTCTTGTGCAC 59.122 45.455 10.75 10.75 40.40 4.57
5216 5330 1.225855 TAGGTTGCTTCTTGTGCACG 58.774 50.000 13.13 0.00 40.40 5.34
5217 5331 1.008538 GGTTGCTTCTTGTGCACGG 60.009 57.895 13.13 7.83 40.40 4.94
5218 5332 1.008538 GTTGCTTCTTGTGCACGGG 60.009 57.895 13.13 7.45 40.40 5.28
5219 5333 2.192861 TTGCTTCTTGTGCACGGGG 61.193 57.895 13.13 4.78 40.40 5.73
5220 5334 4.043200 GCTTCTTGTGCACGGGGC 62.043 66.667 13.13 8.22 45.13 5.80
5244 5358 4.077184 GGACGGCCACACCATCGA 62.077 66.667 0.00 0.00 39.03 3.59
5245 5359 2.813908 GACGGCCACACCATCGAC 60.814 66.667 2.24 0.00 39.03 4.20
5246 5360 4.388499 ACGGCCACACCATCGACC 62.388 66.667 2.24 0.00 39.03 4.79
5248 5362 4.388499 GGCCACACCATCGACCGT 62.388 66.667 0.00 0.00 38.86 4.83
5249 5363 3.118454 GCCACACCATCGACCGTG 61.118 66.667 11.21 11.21 36.04 4.94
5250 5364 2.434185 CCACACCATCGACCGTGG 60.434 66.667 15.86 12.58 42.72 4.94
5263 5377 4.715523 CGTGGTGGCGGGGACAAT 62.716 66.667 0.00 0.00 0.00 2.71
5264 5378 2.672295 GTGGTGGCGGGGACAATA 59.328 61.111 0.00 0.00 0.00 1.90
5265 5379 1.451387 GTGGTGGCGGGGACAATAG 60.451 63.158 0.00 0.00 0.00 1.73
5266 5380 2.516225 GGTGGCGGGGACAATAGC 60.516 66.667 0.00 0.00 0.00 2.97
5267 5381 2.895372 GTGGCGGGGACAATAGCG 60.895 66.667 0.00 0.00 0.00 4.26
5268 5382 3.078196 TGGCGGGGACAATAGCGA 61.078 61.111 0.00 0.00 0.00 4.93
5269 5383 2.426023 GGCGGGGACAATAGCGAT 59.574 61.111 0.00 0.00 0.00 4.58
5270 5384 1.116536 TGGCGGGGACAATAGCGATA 61.117 55.000 0.00 0.00 0.00 2.92
5271 5385 0.389948 GGCGGGGACAATAGCGATAG 60.390 60.000 0.00 0.00 0.00 2.08
5272 5386 0.317479 GCGGGGACAATAGCGATAGT 59.683 55.000 0.00 0.00 39.35 2.12
5273 5387 1.935300 GCGGGGACAATAGCGATAGTG 60.935 57.143 6.59 6.59 39.35 2.74
5274 5388 1.611977 CGGGGACAATAGCGATAGTGA 59.388 52.381 15.73 0.00 39.35 3.41
5275 5389 2.351835 CGGGGACAATAGCGATAGTGAG 60.352 54.545 15.73 0.00 39.35 3.51
5276 5390 2.028930 GGGGACAATAGCGATAGTGAGG 60.029 54.545 15.73 0.00 39.35 3.86
5277 5391 2.628657 GGGACAATAGCGATAGTGAGGT 59.371 50.000 15.73 0.00 39.35 3.85
5278 5392 3.069729 GGGACAATAGCGATAGTGAGGTT 59.930 47.826 15.73 0.00 39.35 3.50
5279 5393 4.443034 GGGACAATAGCGATAGTGAGGTTT 60.443 45.833 15.73 0.00 39.35 3.27
5280 5394 4.508124 GGACAATAGCGATAGTGAGGTTTG 59.492 45.833 15.73 0.70 39.35 2.93
5281 5395 4.442706 ACAATAGCGATAGTGAGGTTTGG 58.557 43.478 15.73 0.00 39.35 3.28
5282 5396 2.596904 TAGCGATAGTGAGGTTTGGC 57.403 50.000 0.00 0.00 39.35 4.52
5283 5397 0.613260 AGCGATAGTGAGGTTTGGCA 59.387 50.000 0.00 0.00 39.35 4.92
5284 5398 0.727398 GCGATAGTGAGGTTTGGCAC 59.273 55.000 0.00 0.00 39.35 5.01
5285 5399 0.999406 CGATAGTGAGGTTTGGCACG 59.001 55.000 0.00 0.00 39.88 5.34
5286 5400 1.671850 CGATAGTGAGGTTTGGCACGT 60.672 52.381 0.00 0.00 39.88 4.49
5287 5401 2.000447 GATAGTGAGGTTTGGCACGTC 59.000 52.381 0.00 0.00 39.88 4.34
5288 5402 0.319211 TAGTGAGGTTTGGCACGTCG 60.319 55.000 0.00 0.00 42.34 5.12
5289 5403 1.593209 GTGAGGTTTGGCACGTCGA 60.593 57.895 0.00 0.00 42.34 4.20
5290 5404 1.593209 TGAGGTTTGGCACGTCGAC 60.593 57.895 5.18 5.18 42.34 4.20
5291 5405 2.280592 AGGTTTGGCACGTCGACC 60.281 61.111 10.58 0.00 0.00 4.79
5292 5406 2.589442 GGTTTGGCACGTCGACCA 60.589 61.111 10.58 3.14 0.00 4.02
5293 5407 1.964373 GGTTTGGCACGTCGACCAT 60.964 57.895 10.58 0.00 35.42 3.55
5294 5408 1.206578 GTTTGGCACGTCGACCATG 59.793 57.895 10.58 10.00 35.42 3.66
5295 5409 1.963855 TTTGGCACGTCGACCATGG 60.964 57.895 11.19 11.19 35.42 3.66
5298 5412 3.490759 GCACGTCGACCATGGCAG 61.491 66.667 13.04 6.14 0.00 4.85
5299 5413 2.815211 CACGTCGACCATGGCAGG 60.815 66.667 13.04 4.35 0.00 4.85
5300 5414 2.994995 ACGTCGACCATGGCAGGA 60.995 61.111 13.04 3.49 0.00 3.86
5301 5415 2.202797 CGTCGACCATGGCAGGAG 60.203 66.667 13.04 0.00 0.00 3.69
5302 5416 2.187946 GTCGACCATGGCAGGAGG 59.812 66.667 13.04 0.67 0.00 4.30
5303 5417 3.083349 TCGACCATGGCAGGAGGG 61.083 66.667 13.04 0.00 0.00 4.30
5304 5418 4.864334 CGACCATGGCAGGAGGGC 62.864 72.222 13.04 0.00 43.73 5.19
5314 5428 4.677151 AGGAGGGCGGGAGGGTTT 62.677 66.667 0.00 0.00 0.00 3.27
5315 5429 3.658422 GGAGGGCGGGAGGGTTTT 61.658 66.667 0.00 0.00 0.00 2.43
5316 5430 2.361230 GAGGGCGGGAGGGTTTTG 60.361 66.667 0.00 0.00 0.00 2.44
5317 5431 3.938637 GAGGGCGGGAGGGTTTTGG 62.939 68.421 0.00 0.00 0.00 3.28
5318 5432 3.974293 GGGCGGGAGGGTTTTGGA 61.974 66.667 0.00 0.00 0.00 3.53
5319 5433 2.116556 GGCGGGAGGGTTTTGGAA 59.883 61.111 0.00 0.00 0.00 3.53
5320 5434 1.977009 GGCGGGAGGGTTTTGGAAG 60.977 63.158 0.00 0.00 0.00 3.46
5321 5435 1.074248 GCGGGAGGGTTTTGGAAGA 59.926 57.895 0.00 0.00 0.00 2.87
5322 5436 0.960861 GCGGGAGGGTTTTGGAAGAG 60.961 60.000 0.00 0.00 0.00 2.85
5323 5437 0.322546 CGGGAGGGTTTTGGAAGAGG 60.323 60.000 0.00 0.00 0.00 3.69
5324 5438 0.039764 GGGAGGGTTTTGGAAGAGGG 59.960 60.000 0.00 0.00 0.00 4.30
5325 5439 0.039764 GGAGGGTTTTGGAAGAGGGG 59.960 60.000 0.00 0.00 0.00 4.79
5326 5440 0.778083 GAGGGTTTTGGAAGAGGGGT 59.222 55.000 0.00 0.00 0.00 4.95
5327 5441 0.482887 AGGGTTTTGGAAGAGGGGTG 59.517 55.000 0.00 0.00 0.00 4.61
5328 5442 0.481128 GGGTTTTGGAAGAGGGGTGA 59.519 55.000 0.00 0.00 0.00 4.02
5329 5443 1.133294 GGGTTTTGGAAGAGGGGTGAA 60.133 52.381 0.00 0.00 0.00 3.18
5330 5444 2.673258 GGTTTTGGAAGAGGGGTGAAA 58.327 47.619 0.00 0.00 0.00 2.69
5331 5445 3.239449 GGTTTTGGAAGAGGGGTGAAAT 58.761 45.455 0.00 0.00 0.00 2.17
5332 5446 3.006859 GGTTTTGGAAGAGGGGTGAAATG 59.993 47.826 0.00 0.00 0.00 2.32
5333 5447 3.893753 TTTGGAAGAGGGGTGAAATGA 57.106 42.857 0.00 0.00 0.00 2.57
5334 5448 3.439857 TTGGAAGAGGGGTGAAATGAG 57.560 47.619 0.00 0.00 0.00 2.90
5335 5449 1.635487 TGGAAGAGGGGTGAAATGAGG 59.365 52.381 0.00 0.00 0.00 3.86
5336 5450 1.636003 GGAAGAGGGGTGAAATGAGGT 59.364 52.381 0.00 0.00 0.00 3.85
5337 5451 2.619074 GGAAGAGGGGTGAAATGAGGTG 60.619 54.545 0.00 0.00 0.00 4.00
5338 5452 0.995024 AGAGGGGTGAAATGAGGTGG 59.005 55.000 0.00 0.00 0.00 4.61
5339 5453 0.991920 GAGGGGTGAAATGAGGTGGA 59.008 55.000 0.00 0.00 0.00 4.02
5340 5454 1.566231 GAGGGGTGAAATGAGGTGGAT 59.434 52.381 0.00 0.00 0.00 3.41
5341 5455 1.285962 AGGGGTGAAATGAGGTGGATG 59.714 52.381 0.00 0.00 0.00 3.51
5342 5456 1.005924 GGGGTGAAATGAGGTGGATGT 59.994 52.381 0.00 0.00 0.00 3.06
5343 5457 2.094675 GGGTGAAATGAGGTGGATGTG 58.905 52.381 0.00 0.00 0.00 3.21
5344 5458 1.474077 GGTGAAATGAGGTGGATGTGC 59.526 52.381 0.00 0.00 0.00 4.57
5345 5459 1.474077 GTGAAATGAGGTGGATGTGCC 59.526 52.381 0.00 0.00 37.10 5.01
5346 5460 1.075212 TGAAATGAGGTGGATGTGCCA 59.925 47.619 0.00 0.00 46.96 4.92
5353 5467 4.386951 TGGATGTGCCACCGACGG 62.387 66.667 13.61 13.61 43.33 4.79
5366 5480 3.379445 GACGGGCGGACCAGAGAA 61.379 66.667 0.00 0.00 40.22 2.87
5367 5481 3.358076 GACGGGCGGACCAGAGAAG 62.358 68.421 0.00 0.00 40.22 2.85
5368 5482 3.068691 CGGGCGGACCAGAGAAGA 61.069 66.667 0.00 0.00 40.22 2.87
5369 5483 2.427245 CGGGCGGACCAGAGAAGAT 61.427 63.158 0.00 0.00 40.22 2.40
5370 5484 1.107538 CGGGCGGACCAGAGAAGATA 61.108 60.000 0.00 0.00 40.22 1.98
5371 5485 1.120530 GGGCGGACCAGAGAAGATAA 58.879 55.000 0.00 0.00 39.85 1.75
5372 5486 1.069358 GGGCGGACCAGAGAAGATAAG 59.931 57.143 0.00 0.00 39.85 1.73
5373 5487 1.069358 GGCGGACCAGAGAAGATAAGG 59.931 57.143 0.00 0.00 35.26 2.69
5374 5488 1.069358 GCGGACCAGAGAAGATAAGGG 59.931 57.143 0.00 0.00 0.00 3.95
5375 5489 2.389715 CGGACCAGAGAAGATAAGGGT 58.610 52.381 0.00 0.00 0.00 4.34
5376 5490 2.101582 CGGACCAGAGAAGATAAGGGTG 59.898 54.545 0.00 0.00 0.00 4.61
5377 5491 2.436173 GGACCAGAGAAGATAAGGGTGG 59.564 54.545 0.00 0.00 0.00 4.61
5378 5492 2.436173 GACCAGAGAAGATAAGGGTGGG 59.564 54.545 0.00 0.00 0.00 4.61
5379 5493 1.141858 CCAGAGAAGATAAGGGTGGGC 59.858 57.143 0.00 0.00 0.00 5.36
5380 5494 1.123928 AGAGAAGATAAGGGTGGGCG 58.876 55.000 0.00 0.00 0.00 6.13
5381 5495 0.831307 GAGAAGATAAGGGTGGGCGT 59.169 55.000 0.00 0.00 0.00 5.68
5382 5496 0.831307 AGAAGATAAGGGTGGGCGTC 59.169 55.000 0.00 0.00 0.00 5.19
5383 5497 0.529992 GAAGATAAGGGTGGGCGTCG 60.530 60.000 0.00 0.00 0.00 5.12
5384 5498 2.588034 GATAAGGGTGGGCGTCGC 60.588 66.667 9.22 9.22 0.00 5.19
5385 5499 3.379865 GATAAGGGTGGGCGTCGCA 62.380 63.158 20.50 0.00 0.00 5.10
5386 5500 3.675619 ATAAGGGTGGGCGTCGCAC 62.676 63.158 20.50 17.41 44.77 5.34
5400 5514 4.505217 GCACGCGTCGAAGCCATG 62.505 66.667 17.73 16.22 0.00 3.66
5401 5515 3.112075 CACGCGTCGAAGCCATGT 61.112 61.111 17.73 7.13 0.00 3.21
5402 5516 2.809601 ACGCGTCGAAGCCATGTC 60.810 61.111 17.73 0.00 0.00 3.06
5403 5517 3.554692 CGCGTCGAAGCCATGTCC 61.555 66.667 17.73 0.00 0.00 4.02
5404 5518 3.554692 GCGTCGAAGCCATGTCCG 61.555 66.667 12.67 0.00 0.00 4.79
5405 5519 3.554692 CGTCGAAGCCATGTCCGC 61.555 66.667 0.00 0.00 0.00 5.54
5406 5520 3.554692 GTCGAAGCCATGTCCGCG 61.555 66.667 0.00 0.00 0.00 6.46
5424 5538 3.428282 CCAACGCGTACTTGGCCC 61.428 66.667 14.46 0.00 32.03 5.80
5425 5539 3.784412 CAACGCGTACTTGGCCCG 61.784 66.667 14.46 0.00 0.00 6.13
5426 5540 3.993584 AACGCGTACTTGGCCCGA 61.994 61.111 14.46 0.00 0.00 5.14
5427 5541 3.518419 AACGCGTACTTGGCCCGAA 62.518 57.895 14.46 0.00 0.00 4.30
5428 5542 2.510691 CGCGTACTTGGCCCGAAT 60.511 61.111 0.00 0.00 0.00 3.34
5429 5543 2.104253 CGCGTACTTGGCCCGAATT 61.104 57.895 0.00 0.00 0.00 2.17
5430 5544 1.641123 CGCGTACTTGGCCCGAATTT 61.641 55.000 0.00 0.00 0.00 1.82
5431 5545 0.179174 GCGTACTTGGCCCGAATTTG 60.179 55.000 0.00 0.00 0.00 2.32
5432 5546 0.450184 CGTACTTGGCCCGAATTTGG 59.550 55.000 4.52 4.52 0.00 3.28
5439 5553 2.037208 CCCGAATTTGGGCCTGGT 59.963 61.111 18.30 0.00 43.70 4.00
5440 5554 2.052104 CCCGAATTTGGGCCTGGTC 61.052 63.158 18.30 0.00 43.70 4.02
5441 5555 1.304052 CCGAATTTGGGCCTGGTCA 60.304 57.895 4.53 0.00 0.00 4.02
5442 5556 1.595093 CCGAATTTGGGCCTGGTCAC 61.595 60.000 4.53 0.00 0.00 3.67
5443 5557 1.883021 GAATTTGGGCCTGGTCACG 59.117 57.895 4.53 0.00 0.00 4.35
5444 5558 1.595093 GAATTTGGGCCTGGTCACGG 61.595 60.000 4.53 0.00 0.00 4.94
5445 5559 3.583882 ATTTGGGCCTGGTCACGGG 62.584 63.158 4.53 0.00 46.56 5.28
5451 5565 2.124983 CCTGGTCACGGGCAGATG 60.125 66.667 0.00 0.00 36.06 2.90
5452 5566 2.659063 CCTGGTCACGGGCAGATGA 61.659 63.158 0.00 0.00 36.06 2.92
5453 5567 1.296392 CTGGTCACGGGCAGATGAA 59.704 57.895 0.00 0.00 0.00 2.57
5454 5568 0.321564 CTGGTCACGGGCAGATGAAA 60.322 55.000 0.00 0.00 0.00 2.69
5455 5569 0.109532 TGGTCACGGGCAGATGAAAA 59.890 50.000 0.00 0.00 0.00 2.29
5456 5570 1.243902 GGTCACGGGCAGATGAAAAA 58.756 50.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
89 94 0.465705 TGAATGGGCGATGGAGAGAC 59.534 55.000 0.00 0.00 0.00 3.36
219 228 2.762043 AAGAGCGAGGGAGGAGGC 60.762 66.667 0.00 0.00 0.00 4.70
220 229 1.261238 AACAAGAGCGAGGGAGGAGG 61.261 60.000 0.00 0.00 0.00 4.30
221 230 0.108424 CAACAAGAGCGAGGGAGGAG 60.108 60.000 0.00 0.00 0.00 3.69
222 231 1.975327 CAACAAGAGCGAGGGAGGA 59.025 57.895 0.00 0.00 0.00 3.71
275 296 2.811431 CACAGGAAATAAACAGCACGGA 59.189 45.455 0.00 0.00 0.00 4.69
287 308 1.688197 CCACAAACCAGCACAGGAAAT 59.312 47.619 0.00 0.00 0.00 2.17
376 414 3.127533 CGAGCAAAAGGAGCGGGG 61.128 66.667 0.00 0.00 37.01 5.73
497 558 3.161866 TGAAAGCACCCAATAAGAACCC 58.838 45.455 0.00 0.00 0.00 4.11
716 804 7.605691 CCAAGATAGGAATGAAAGCTATGGTAG 59.394 40.741 0.00 0.00 0.00 3.18
717 805 7.292356 TCCAAGATAGGAATGAAAGCTATGGTA 59.708 37.037 0.00 0.00 33.93 3.25
718 806 6.101734 TCCAAGATAGGAATGAAAGCTATGGT 59.898 38.462 0.00 0.00 33.93 3.55
719 807 6.537355 TCCAAGATAGGAATGAAAGCTATGG 58.463 40.000 0.00 0.00 33.93 2.74
720 808 8.512956 CAATCCAAGATAGGAATGAAAGCTATG 58.487 37.037 0.00 0.00 40.33 2.23
721 809 8.223330 ACAATCCAAGATAGGAATGAAAGCTAT 58.777 33.333 5.14 0.00 40.33 2.97
752 852 6.618811 CCTTCATTTTCAGAGAAATGGACAG 58.381 40.000 9.63 5.05 43.74 3.51
795 895 3.181486 TGTCTATCTGCAGGAAACTAGCG 60.181 47.826 15.13 0.00 40.21 4.26
796 896 4.098654 TCTGTCTATCTGCAGGAAACTAGC 59.901 45.833 15.13 5.23 40.21 3.42
825 929 6.749923 AATCAGGAAAGATTCTAACAGCAC 57.250 37.500 0.00 0.00 33.03 4.40
919 1024 0.108138 GTAGCCTTGTGCATCTCCGT 60.108 55.000 0.00 0.00 44.83 4.69
949 1054 1.002430 TCAGAGCCGAACAAGAAGCAT 59.998 47.619 0.00 0.00 0.00 3.79
1021 1126 1.826487 GTTGCAAACCCCAGGACGT 60.826 57.895 0.00 0.00 42.21 4.34
1083 1188 1.077212 CCAGCCCTCATGGTTCAGG 60.077 63.158 0.00 0.00 36.04 3.86
1197 1302 0.968393 ACGAGGAGGAGGAGCAGTTC 60.968 60.000 0.00 0.00 0.00 3.01
1221 1326 1.220206 CACCACTGCTAGCCTGGAG 59.780 63.158 27.42 19.04 0.00 3.86
1224 1329 0.108424 GAGACACCACTGCTAGCCTG 60.108 60.000 13.29 7.40 0.00 4.85
1302 1407 2.946329 GAGATCGAGGCTAGTCAGTTCA 59.054 50.000 0.00 0.00 0.00 3.18
1305 1410 2.486548 GGAGAGATCGAGGCTAGTCAGT 60.487 54.545 0.00 0.00 0.00 3.41
1323 1428 4.252073 CACCAGAGAACTCATTGAAGGAG 58.748 47.826 5.18 5.18 38.36 3.69
1381 1486 9.979578 ATTATTGTTATTCAAGTTGAGCAACAA 57.020 25.926 29.69 29.69 41.57 2.83
1545 1650 5.290386 GGTATAGAACCGGAGAGATTGTTG 58.710 45.833 9.46 0.00 38.88 3.33
1704 1809 2.027837 CCCAATCTCTTTTGGCAAAGGG 60.028 50.000 20.18 17.16 44.04 3.95
1857 1962 7.069455 AGGTAAGTAATGTTCCCAATTATTGCC 59.931 37.037 0.00 0.00 0.00 4.52
1862 1967 8.607713 TCTCAAGGTAAGTAATGTTCCCAATTA 58.392 33.333 0.00 0.00 0.00 1.40
1881 1986 7.957002 TCCTGTAAAGATATAGCTTCTCAAGG 58.043 38.462 3.25 9.02 0.00 3.61
1911 2016 7.822161 TTCAGATGGAATGGTACCATTTATG 57.178 36.000 34.93 26.57 46.48 1.90
2007 2112 3.011257 ACAACCCTGGTATGTTGCCTAAT 59.989 43.478 12.41 0.00 44.38 1.73
2148 2253 4.018960 AGCTTGGTCATGTACTGAAATCCT 60.019 41.667 0.00 0.00 35.07 3.24
2179 2284 5.306532 AGCATATTGTTGAAGAGTTGCAG 57.693 39.130 0.00 0.00 0.00 4.41
2265 2370 5.190925 AGGTATCTGCCCTGTAATGTTGTTA 59.809 40.000 0.00 0.00 0.00 2.41
2319 2424 4.651778 TGTTAGACCCCAGATTCAACAAG 58.348 43.478 0.00 0.00 0.00 3.16
2344 2449 4.021104 TCTGTGAGGTATGTTTCCAGTCAG 60.021 45.833 0.00 0.00 0.00 3.51
2475 2580 2.574322 CCATTGAACTTGTTTCGAGCG 58.426 47.619 0.00 0.00 36.97 5.03
2514 2619 0.533491 GCAGAGCATTGCAATTCCCA 59.467 50.000 9.83 0.00 43.53 4.37
2586 2691 4.081198 ACAACAAGCTTTGACAATTTCCCA 60.081 37.500 5.15 0.00 0.00 4.37
2622 2727 2.101750 GCTTCCTCCTAGCCTGTTAGAC 59.898 54.545 0.00 0.00 32.45 2.59
2650 2755 5.995282 ACGTTGTACAATTGAAGATCTCCAA 59.005 36.000 13.59 0.00 0.00 3.53
2673 2778 2.412065 GCTGAGATCAAGACGTTGCAAC 60.412 50.000 19.89 19.89 33.23 4.17
2745 2850 1.341606 CGAACGAGAGAAGCTCCAAC 58.658 55.000 0.00 0.00 40.70 3.77
2746 2851 0.388649 GCGAACGAGAGAAGCTCCAA 60.389 55.000 0.00 0.00 40.70 3.53
2802 2907 4.675114 GCTGTCAAATGTGAAAGTTTACCG 59.325 41.667 4.93 0.00 40.79 4.02
2928 3033 4.248859 CAAGCTCTGATGGTATATTCCCG 58.751 47.826 0.00 0.00 0.00 5.14
2952 3057 7.147976 ACAAACTTTCCAATAATGCAAGACTC 58.852 34.615 0.00 0.00 0.00 3.36
2997 3102 6.575244 AATGTATCTGGGATTTCACCTGTA 57.425 37.500 0.00 0.00 0.00 2.74
3036 3141 2.093941 CGAGACATTGAGCTGAAGCAAG 59.906 50.000 4.90 0.00 45.16 4.01
3090 3195 2.028130 ACCATGTTGTCAAAAAGCGGA 58.972 42.857 0.00 0.00 0.00 5.54
3243 3348 3.035363 TGATACTCCTCCAATAACGGCA 58.965 45.455 0.00 0.00 0.00 5.69
3540 3645 1.550524 TCTGCACGGAAGCTGTTATCT 59.449 47.619 0.00 0.00 35.31 1.98
3773 3878 0.659957 GATGATCCGAGGCTTGCAAC 59.340 55.000 0.00 0.00 0.00 4.17
3897 4002 2.029739 TGAACCAGCAATTGCAGACATG 60.030 45.455 30.89 19.44 45.16 3.21
3984 4089 9.190317 CATATAGGGCAAGATAGTAGTGACATA 57.810 37.037 0.00 0.00 0.00 2.29
4018 4123 9.647797 TTCATCGCTTAACTAAAGATTCAAGTA 57.352 29.630 0.00 0.00 37.38 2.24
4029 4137 5.935206 TGTTGACCATTCATCGCTTAACTAA 59.065 36.000 0.00 0.00 0.00 2.24
4168 4277 2.582202 CTATTGGTTGCACAGGCGCG 62.582 60.000 0.00 0.00 45.35 6.86
4270 4379 3.608506 CGACGGCTTTATCTTCCATATCG 59.391 47.826 0.00 0.00 0.00 2.92
4274 4383 2.798499 CGACGACGGCTTTATCTTCCAT 60.798 50.000 0.00 0.00 35.72 3.41
4414 4523 2.049063 GGTGACGACGCAGAGCTT 60.049 61.111 0.00 0.00 0.00 3.74
4420 4529 2.355837 GAAGCAGGTGACGACGCA 60.356 61.111 0.00 0.00 0.00 5.24
4429 4538 2.672478 CGAAGAACGATCAGAAGCAGGT 60.672 50.000 0.00 0.00 45.77 4.00
4548 4660 1.180029 ATGAGTGCATGCTCCCAAAC 58.820 50.000 20.33 7.39 34.74 2.93
4625 4738 4.284490 TCAGAGAGGCTAACAATTGACACT 59.716 41.667 13.59 2.67 0.00 3.55
4630 4743 6.111382 TCTTCATCAGAGAGGCTAACAATTG 58.889 40.000 3.24 3.24 0.00 2.32
4631 4744 6.305272 TCTTCATCAGAGAGGCTAACAATT 57.695 37.500 0.00 0.00 0.00 2.32
4632 4745 5.946942 TCTTCATCAGAGAGGCTAACAAT 57.053 39.130 0.00 0.00 0.00 2.71
4781 4895 3.196463 CATGTTGTTCCAGCAAAAGCAA 58.804 40.909 0.00 0.00 0.00 3.91
4833 4947 3.055312 ACCGAGGAAGGTCAGATAAAACC 60.055 47.826 0.00 0.00 41.46 3.27
4845 4959 2.035832 ACAAAAATTGCACCGAGGAAGG 59.964 45.455 0.00 0.00 37.30 3.46
4886 5000 2.846193 CACCGAGGAAGGTCAGAAAAA 58.154 47.619 0.00 0.00 43.89 1.94
4887 5001 1.542547 GCACCGAGGAAGGTCAGAAAA 60.543 52.381 0.00 0.00 43.89 2.29
4888 5002 0.034896 GCACCGAGGAAGGTCAGAAA 59.965 55.000 0.00 0.00 43.89 2.52
4889 5003 1.118965 TGCACCGAGGAAGGTCAGAA 61.119 55.000 0.00 0.00 43.89 3.02
4890 5004 0.904865 ATGCACCGAGGAAGGTCAGA 60.905 55.000 0.00 0.00 43.89 3.27
4891 5005 0.460987 GATGCACCGAGGAAGGTCAG 60.461 60.000 0.00 0.00 43.89 3.51
4892 5006 0.904865 AGATGCACCGAGGAAGGTCA 60.905 55.000 0.00 0.00 43.89 4.02
4893 5007 0.250513 AAGATGCACCGAGGAAGGTC 59.749 55.000 0.00 0.00 43.89 3.85
4895 5009 1.826385 AAAAGATGCACCGAGGAAGG 58.174 50.000 0.00 0.00 37.30 3.46
4896 5010 4.272018 CAGATAAAAGATGCACCGAGGAAG 59.728 45.833 0.00 0.00 0.00 3.46
4897 5011 4.081142 TCAGATAAAAGATGCACCGAGGAA 60.081 41.667 0.00 0.00 0.00 3.36
4898 5012 3.450817 TCAGATAAAAGATGCACCGAGGA 59.549 43.478 0.00 0.00 0.00 3.71
4899 5013 3.797039 TCAGATAAAAGATGCACCGAGG 58.203 45.455 0.00 0.00 0.00 4.63
4900 5014 4.872691 AGTTCAGATAAAAGATGCACCGAG 59.127 41.667 0.00 0.00 0.00 4.63
4901 5015 4.832248 AGTTCAGATAAAAGATGCACCGA 58.168 39.130 0.00 0.00 0.00 4.69
4902 5016 5.551760 AAGTTCAGATAAAAGATGCACCG 57.448 39.130 0.00 0.00 0.00 4.94
4903 5017 7.150783 AGAAAGTTCAGATAAAAGATGCACC 57.849 36.000 0.00 0.00 0.00 5.01
4912 5026 9.227777 GCCCTAAGTTTAGAAAGTTCAGATAAA 57.772 33.333 0.51 0.00 33.79 1.40
4913 5027 8.380099 TGCCCTAAGTTTAGAAAGTTCAGATAA 58.620 33.333 0.51 0.00 33.79 1.75
4914 5028 7.913789 TGCCCTAAGTTTAGAAAGTTCAGATA 58.086 34.615 0.51 0.00 33.79 1.98
4915 5029 6.779860 TGCCCTAAGTTTAGAAAGTTCAGAT 58.220 36.000 0.51 0.00 33.79 2.90
4916 5030 6.182507 TGCCCTAAGTTTAGAAAGTTCAGA 57.817 37.500 0.51 0.00 33.79 3.27
4917 5031 6.486993 AGTTGCCCTAAGTTTAGAAAGTTCAG 59.513 38.462 0.51 0.00 33.79 3.02
4918 5032 6.362248 AGTTGCCCTAAGTTTAGAAAGTTCA 58.638 36.000 0.51 0.00 33.79 3.18
4919 5033 6.879276 AGTTGCCCTAAGTTTAGAAAGTTC 57.121 37.500 0.51 0.00 33.79 3.01
4920 5034 6.831868 TGAAGTTGCCCTAAGTTTAGAAAGTT 59.168 34.615 0.51 1.03 35.78 2.66
4921 5035 6.362248 TGAAGTTGCCCTAAGTTTAGAAAGT 58.638 36.000 0.51 0.00 32.13 2.66
4922 5036 6.710744 TCTGAAGTTGCCCTAAGTTTAGAAAG 59.289 38.462 0.51 0.00 39.79 2.62
4923 5037 6.597562 TCTGAAGTTGCCCTAAGTTTAGAAA 58.402 36.000 0.51 0.00 39.79 2.52
4924 5038 6.182507 TCTGAAGTTGCCCTAAGTTTAGAA 57.817 37.500 0.51 0.00 39.79 2.10
4925 5039 5.818678 TCTGAAGTTGCCCTAAGTTTAGA 57.181 39.130 0.51 0.00 40.19 2.10
4926 5040 6.710744 TCTTTCTGAAGTTGCCCTAAGTTTAG 59.289 38.462 0.00 0.00 36.91 1.85
4927 5041 6.485648 GTCTTTCTGAAGTTGCCCTAAGTTTA 59.514 38.462 0.00 0.00 32.13 2.01
4928 5042 5.299531 GTCTTTCTGAAGTTGCCCTAAGTTT 59.700 40.000 0.00 0.00 32.13 2.66
4929 5043 4.822350 GTCTTTCTGAAGTTGCCCTAAGTT 59.178 41.667 0.00 0.00 34.65 2.66
4930 5044 4.141482 TGTCTTTCTGAAGTTGCCCTAAGT 60.141 41.667 0.00 0.00 34.41 2.24
4931 5045 4.214332 GTGTCTTTCTGAAGTTGCCCTAAG 59.786 45.833 0.00 0.00 34.41 2.18
4932 5046 4.134563 GTGTCTTTCTGAAGTTGCCCTAA 58.865 43.478 0.00 0.00 34.41 2.69
4933 5047 3.740115 GTGTCTTTCTGAAGTTGCCCTA 58.260 45.455 0.00 0.00 34.41 3.53
4934 5048 2.576615 GTGTCTTTCTGAAGTTGCCCT 58.423 47.619 0.00 0.00 34.41 5.19
4935 5049 1.264288 CGTGTCTTTCTGAAGTTGCCC 59.736 52.381 0.00 0.00 34.41 5.36
4936 5050 1.264288 CCGTGTCTTTCTGAAGTTGCC 59.736 52.381 0.00 0.00 34.41 4.52
4937 5051 1.940613 ACCGTGTCTTTCTGAAGTTGC 59.059 47.619 0.00 0.00 34.41 4.17
4938 5052 3.871594 AGAACCGTGTCTTTCTGAAGTTG 59.128 43.478 0.00 0.00 34.41 3.16
4939 5053 4.138487 AGAACCGTGTCTTTCTGAAGTT 57.862 40.909 0.00 0.00 34.41 2.66
4940 5054 3.821421 AGAACCGTGTCTTTCTGAAGT 57.179 42.857 0.00 0.00 34.41 3.01
4945 5059 1.269621 CGGACAGAACCGTGTCTTTCT 60.270 52.381 4.14 0.00 45.34 2.52
4946 5060 1.137513 CGGACAGAACCGTGTCTTTC 58.862 55.000 4.14 0.00 45.34 2.62
4947 5061 3.284197 CGGACAGAACCGTGTCTTT 57.716 52.632 4.14 0.00 45.34 2.52
4955 5069 1.468914 GGATGAAAAGCGGACAGAACC 59.531 52.381 0.00 0.00 0.00 3.62
4956 5070 2.427506 AGGATGAAAAGCGGACAGAAC 58.572 47.619 0.00 0.00 0.00 3.01
4957 5071 2.859165 AGGATGAAAAGCGGACAGAA 57.141 45.000 0.00 0.00 0.00 3.02
4958 5072 2.859165 AAGGATGAAAAGCGGACAGA 57.141 45.000 0.00 0.00 0.00 3.41
4959 5073 3.568538 CAAAAGGATGAAAAGCGGACAG 58.431 45.455 0.00 0.00 0.00 3.51
4960 5074 2.295909 CCAAAAGGATGAAAAGCGGACA 59.704 45.455 0.00 0.00 0.00 4.02
4961 5075 2.352715 CCCAAAAGGATGAAAAGCGGAC 60.353 50.000 0.00 0.00 38.24 4.79
4962 5076 1.892474 CCCAAAAGGATGAAAAGCGGA 59.108 47.619 0.00 0.00 38.24 5.54
4963 5077 1.618343 ACCCAAAAGGATGAAAAGCGG 59.382 47.619 0.00 0.00 39.89 5.52
4964 5078 3.385193 AACCCAAAAGGATGAAAAGCG 57.615 42.857 0.00 0.00 39.89 4.68
4965 5079 4.021104 AGCTAACCCAAAAGGATGAAAAGC 60.021 41.667 0.00 0.00 39.89 3.51
4966 5080 5.243730 TCAGCTAACCCAAAAGGATGAAAAG 59.756 40.000 0.00 0.00 39.89 2.27
4967 5081 5.144100 TCAGCTAACCCAAAAGGATGAAAA 58.856 37.500 0.00 0.00 39.89 2.29
4968 5082 4.735369 TCAGCTAACCCAAAAGGATGAAA 58.265 39.130 0.00 0.00 39.89 2.69
4969 5083 4.380843 TCAGCTAACCCAAAAGGATGAA 57.619 40.909 0.00 0.00 39.89 2.57
4970 5084 4.335416 CTTCAGCTAACCCAAAAGGATGA 58.665 43.478 0.00 0.00 39.89 2.92
4971 5085 3.445096 CCTTCAGCTAACCCAAAAGGATG 59.555 47.826 0.00 0.00 39.89 3.51
4972 5086 3.701664 CCTTCAGCTAACCCAAAAGGAT 58.298 45.455 0.00 0.00 39.89 3.24
4973 5087 2.817839 GCCTTCAGCTAACCCAAAAGGA 60.818 50.000 3.23 0.00 37.57 3.36
4974 5088 1.546029 GCCTTCAGCTAACCCAAAAGG 59.454 52.381 0.00 0.00 39.43 3.11
4975 5089 1.200020 CGCCTTCAGCTAACCCAAAAG 59.800 52.381 0.00 0.00 40.39 2.27
4976 5090 1.243902 CGCCTTCAGCTAACCCAAAA 58.756 50.000 0.00 0.00 40.39 2.44
4977 5091 1.241315 GCGCCTTCAGCTAACCCAAA 61.241 55.000 0.00 0.00 40.39 3.28
4978 5092 1.674322 GCGCCTTCAGCTAACCCAA 60.674 57.895 0.00 0.00 40.39 4.12
4979 5093 2.046314 GCGCCTTCAGCTAACCCA 60.046 61.111 0.00 0.00 40.39 4.51
4980 5094 2.821679 AAGGCGCCTTCAGCTAACCC 62.822 60.000 35.84 0.00 40.39 4.11
4981 5095 1.377333 AAGGCGCCTTCAGCTAACC 60.377 57.895 35.84 0.00 40.39 2.85
4982 5096 0.955919 ACAAGGCGCCTTCAGCTAAC 60.956 55.000 38.34 1.03 40.39 2.34
4983 5097 0.673644 GACAAGGCGCCTTCAGCTAA 60.674 55.000 38.34 0.00 40.39 3.09
4984 5098 1.079127 GACAAGGCGCCTTCAGCTA 60.079 57.895 38.34 0.00 40.39 3.32
4985 5099 2.359230 GACAAGGCGCCTTCAGCT 60.359 61.111 38.34 20.54 40.39 4.24
4986 5100 3.435186 GGACAAGGCGCCTTCAGC 61.435 66.667 38.34 27.27 33.42 4.26
4987 5101 2.032528 TGGACAAGGCGCCTTCAG 59.967 61.111 38.34 29.11 33.42 3.02
4988 5102 2.032528 CTGGACAAGGCGCCTTCA 59.967 61.111 38.34 29.72 33.42 3.02
4989 5103 3.435186 GCTGGACAAGGCGCCTTC 61.435 66.667 38.34 27.76 33.42 3.46
4990 5104 3.958860 AGCTGGACAAGGCGCCTT 61.959 61.111 35.84 35.84 36.60 4.35
4991 5105 4.711949 CAGCTGGACAAGGCGCCT 62.712 66.667 27.08 27.08 0.00 5.52
4992 5106 4.704833 TCAGCTGGACAAGGCGCC 62.705 66.667 21.89 21.89 0.00 6.53
4993 5107 3.123620 CTCAGCTGGACAAGGCGC 61.124 66.667 15.13 0.00 0.00 6.53
4994 5108 1.739562 GACTCAGCTGGACAAGGCG 60.740 63.158 15.13 0.00 0.00 5.52
4995 5109 1.376553 GGACTCAGCTGGACAAGGC 60.377 63.158 15.13 5.56 0.00 4.35
4996 5110 1.079543 CGGACTCAGCTGGACAAGG 60.080 63.158 15.13 0.42 0.00 3.61
4997 5111 1.739562 GCGGACTCAGCTGGACAAG 60.740 63.158 15.13 6.22 0.00 3.16
4998 5112 2.343758 GCGGACTCAGCTGGACAA 59.656 61.111 15.13 0.00 0.00 3.18
4999 5113 3.695606 GGCGGACTCAGCTGGACA 61.696 66.667 15.13 0.00 34.52 4.02
5000 5114 4.459089 GGGCGGACTCAGCTGGAC 62.459 72.222 15.13 5.05 34.52 4.02
5002 5116 3.551496 TTTGGGCGGACTCAGCTGG 62.551 63.158 15.13 7.28 34.52 4.85
5003 5117 2.032528 TTTGGGCGGACTCAGCTG 59.967 61.111 7.63 7.63 34.52 4.24
5004 5118 2.032681 GTTTGGGCGGACTCAGCT 59.967 61.111 1.01 0.00 34.52 4.24
5005 5119 3.056328 GGTTTGGGCGGACTCAGC 61.056 66.667 0.00 0.00 0.00 4.26
5006 5120 1.672356 CAGGTTTGGGCGGACTCAG 60.672 63.158 0.00 0.00 0.00 3.35
5007 5121 2.429930 CAGGTTTGGGCGGACTCA 59.570 61.111 0.00 0.00 0.00 3.41
5008 5122 2.359975 CCAGGTTTGGGCGGACTC 60.360 66.667 0.00 0.00 41.05 3.36
5035 5149 2.612219 GAAATGCGTCGGCCCATTGG 62.612 60.000 0.00 0.00 38.85 3.16
5036 5150 1.226660 GAAATGCGTCGGCCCATTG 60.227 57.895 0.00 0.00 38.85 2.82
5037 5151 2.760159 CGAAATGCGTCGGCCCATT 61.760 57.895 0.00 0.00 38.85 3.16
5038 5152 3.202001 CGAAATGCGTCGGCCCAT 61.202 61.111 0.00 0.00 38.85 4.00
5048 5162 2.175811 GCCACACGGACGAAATGC 59.824 61.111 0.00 0.00 0.00 3.56
5049 5163 0.948623 TCAGCCACACGGACGAAATG 60.949 55.000 0.00 0.00 0.00 2.32
5050 5164 0.250124 TTCAGCCACACGGACGAAAT 60.250 50.000 0.00 0.00 0.00 2.17
5051 5165 0.250124 ATTCAGCCACACGGACGAAA 60.250 50.000 0.00 0.00 0.00 3.46
5052 5166 0.250124 AATTCAGCCACACGGACGAA 60.250 50.000 0.00 0.00 0.00 3.85
5053 5167 0.250124 AAATTCAGCCACACGGACGA 60.250 50.000 0.00 0.00 0.00 4.20
5054 5168 0.591170 AAAATTCAGCCACACGGACG 59.409 50.000 0.00 0.00 0.00 4.79
5055 5169 2.393764 CAAAAATTCAGCCACACGGAC 58.606 47.619 0.00 0.00 0.00 4.79
5056 5170 1.339610 CCAAAAATTCAGCCACACGGA 59.660 47.619 0.00 0.00 0.00 4.69
5057 5171 1.782044 CCAAAAATTCAGCCACACGG 58.218 50.000 0.00 0.00 0.00 4.94
5058 5172 1.139163 GCCAAAAATTCAGCCACACG 58.861 50.000 0.00 0.00 0.00 4.49
5059 5173 2.237393 TGCCAAAAATTCAGCCACAC 57.763 45.000 0.00 0.00 0.00 3.82
5060 5174 2.836262 CTTGCCAAAAATTCAGCCACA 58.164 42.857 0.00 0.00 0.00 4.17
5061 5175 1.532437 GCTTGCCAAAAATTCAGCCAC 59.468 47.619 0.00 0.00 0.00 5.01
5062 5176 1.140452 TGCTTGCCAAAAATTCAGCCA 59.860 42.857 0.00 0.00 0.00 4.75
5063 5177 1.881591 TGCTTGCCAAAAATTCAGCC 58.118 45.000 0.00 0.00 0.00 4.85
5064 5178 3.967203 TTTGCTTGCCAAAAATTCAGC 57.033 38.095 0.00 0.00 40.32 4.26
5065 5179 7.379262 GGTTTAATTTGCTTGCCAAAAATTCAG 59.621 33.333 3.71 0.00 45.80 3.02
5066 5180 7.067981 AGGTTTAATTTGCTTGCCAAAAATTCA 59.932 29.630 3.71 0.00 45.80 2.57
5067 5181 7.424803 AGGTTTAATTTGCTTGCCAAAAATTC 58.575 30.769 3.71 0.00 45.80 2.17
5068 5182 7.345422 AGGTTTAATTTGCTTGCCAAAAATT 57.655 28.000 5.45 5.45 45.80 1.82
5069 5183 6.957920 AGGTTTAATTTGCTTGCCAAAAAT 57.042 29.167 0.00 0.00 45.80 1.82
5070 5184 7.865706 TTAGGTTTAATTTGCTTGCCAAAAA 57.134 28.000 0.00 0.00 45.80 1.94
5071 5185 7.865706 TTTAGGTTTAATTTGCTTGCCAAAA 57.134 28.000 0.00 0.00 45.80 2.44
5072 5186 8.457238 AATTTAGGTTTAATTTGCTTGCCAAA 57.543 26.923 0.00 0.00 46.64 3.28
5073 5187 9.213799 CTAATTTAGGTTTAATTTGCTTGCCAA 57.786 29.630 0.00 0.00 0.00 4.52
5074 5188 7.821846 CCTAATTTAGGTTTAATTTGCTTGCCA 59.178 33.333 13.48 0.00 41.18 4.92
5075 5189 7.279981 CCCTAATTTAGGTTTAATTTGCTTGCC 59.720 37.037 18.92 0.00 44.73 4.52
5076 5190 7.201609 GCCCTAATTTAGGTTTAATTTGCTTGC 60.202 37.037 18.92 8.26 44.73 4.01
5077 5191 7.279981 GGCCCTAATTTAGGTTTAATTTGCTTG 59.720 37.037 18.92 2.85 44.73 4.01
5078 5192 7.037945 TGGCCCTAATTTAGGTTTAATTTGCTT 60.038 33.333 18.92 0.00 44.73 3.91
5079 5193 6.442244 TGGCCCTAATTTAGGTTTAATTTGCT 59.558 34.615 18.92 0.00 44.73 3.91
5080 5194 6.645306 TGGCCCTAATTTAGGTTTAATTTGC 58.355 36.000 18.92 12.65 44.73 3.68
5081 5195 9.161629 CTTTGGCCCTAATTTAGGTTTAATTTG 57.838 33.333 18.92 4.68 44.73 2.32
5082 5196 8.325787 CCTTTGGCCCTAATTTAGGTTTAATTT 58.674 33.333 18.92 0.00 44.73 1.82
5083 5197 7.582633 GCCTTTGGCCCTAATTTAGGTTTAATT 60.583 37.037 18.92 0.00 44.06 1.40
5084 5198 6.126883 GCCTTTGGCCCTAATTTAGGTTTAAT 60.127 38.462 18.92 0.00 44.06 1.40
5085 5199 5.188163 GCCTTTGGCCCTAATTTAGGTTTAA 59.812 40.000 18.92 9.22 44.06 1.52
5086 5200 4.712829 GCCTTTGGCCCTAATTTAGGTTTA 59.287 41.667 18.92 4.25 44.06 2.01
5087 5201 3.517901 GCCTTTGGCCCTAATTTAGGTTT 59.482 43.478 18.92 0.00 44.06 3.27
5088 5202 3.104512 GCCTTTGGCCCTAATTTAGGTT 58.895 45.455 18.92 0.00 44.06 3.50
5089 5203 2.747177 GCCTTTGGCCCTAATTTAGGT 58.253 47.619 18.92 0.00 44.06 3.08
5102 5216 0.451783 GCATGAACTACGGCCTTTGG 59.548 55.000 0.00 0.00 0.00 3.28
5103 5217 0.451783 GGCATGAACTACGGCCTTTG 59.548 55.000 0.00 0.00 43.09 2.77
5104 5218 1.024579 CGGCATGAACTACGGCCTTT 61.025 55.000 0.00 0.00 44.23 3.11
5105 5219 1.449601 CGGCATGAACTACGGCCTT 60.450 57.895 0.00 0.00 44.23 4.35
5106 5220 2.186903 CGGCATGAACTACGGCCT 59.813 61.111 0.00 0.00 44.23 5.19
5107 5221 2.895372 CCGGCATGAACTACGGCC 60.895 66.667 0.00 0.00 42.98 6.13
5110 5224 1.135199 AGTGTACCGGCATGAACTACG 60.135 52.381 0.00 0.00 0.00 3.51
5111 5225 2.667473 AGTGTACCGGCATGAACTAC 57.333 50.000 0.00 0.00 0.00 2.73
5112 5226 2.933492 GCAAGTGTACCGGCATGAACTA 60.933 50.000 0.00 0.00 0.00 2.24
5113 5227 1.808411 CAAGTGTACCGGCATGAACT 58.192 50.000 0.00 0.00 0.00 3.01
5114 5228 0.168128 GCAAGTGTACCGGCATGAAC 59.832 55.000 0.00 0.00 0.00 3.18
5115 5229 0.958382 GGCAAGTGTACCGGCATGAA 60.958 55.000 0.00 0.00 0.00 2.57
5116 5230 1.376683 GGCAAGTGTACCGGCATGA 60.377 57.895 0.00 0.00 0.00 3.07
5117 5231 1.240641 TTGGCAAGTGTACCGGCATG 61.241 55.000 0.00 0.00 34.92 4.06
5118 5232 1.074072 TTGGCAAGTGTACCGGCAT 59.926 52.632 0.00 0.00 34.92 4.40
5119 5233 1.894756 GTTGGCAAGTGTACCGGCA 60.895 57.895 0.00 0.00 0.00 5.69
5120 5234 2.622962 GGTTGGCAAGTGTACCGGC 61.623 63.158 0.00 0.00 0.00 6.13
5121 5235 0.536460 AAGGTTGGCAAGTGTACCGG 60.536 55.000 0.00 0.00 35.80 5.28
5122 5236 0.872388 GAAGGTTGGCAAGTGTACCG 59.128 55.000 0.00 0.00 35.80 4.02
5123 5237 1.975660 TGAAGGTTGGCAAGTGTACC 58.024 50.000 0.00 0.00 0.00 3.34
5124 5238 3.189287 CAGATGAAGGTTGGCAAGTGTAC 59.811 47.826 0.00 0.00 0.00 2.90
5125 5239 3.411446 CAGATGAAGGTTGGCAAGTGTA 58.589 45.455 0.00 0.00 0.00 2.90
5126 5240 2.233271 CAGATGAAGGTTGGCAAGTGT 58.767 47.619 0.00 0.00 0.00 3.55
5127 5241 1.542915 CCAGATGAAGGTTGGCAAGTG 59.457 52.381 0.00 0.00 0.00 3.16
5128 5242 1.915141 CCAGATGAAGGTTGGCAAGT 58.085 50.000 0.00 0.00 0.00 3.16
5133 5247 1.318158 GCTGGCCAGATGAAGGTTGG 61.318 60.000 37.21 6.37 35.06 3.77
5134 5248 1.318158 GGCTGGCCAGATGAAGGTTG 61.318 60.000 37.21 6.97 35.81 3.77
5135 5249 1.000396 GGCTGGCCAGATGAAGGTT 60.000 57.895 37.21 0.00 35.81 3.50
5136 5250 2.679716 GGCTGGCCAGATGAAGGT 59.320 61.111 37.21 0.00 35.81 3.50
5137 5251 2.123982 GGGCTGGCCAGATGAAGG 60.124 66.667 37.21 9.51 37.98 3.46
5138 5252 1.153005 GAGGGCTGGCCAGATGAAG 60.153 63.158 37.21 10.35 37.98 3.02
5139 5253 1.210204 AAGAGGGCTGGCCAGATGAA 61.210 55.000 37.21 0.00 37.98 2.57
5140 5254 1.617536 AAGAGGGCTGGCCAGATGA 60.618 57.895 37.21 0.00 37.98 2.92
5141 5255 1.153005 GAAGAGGGCTGGCCAGATG 60.153 63.158 37.21 12.08 37.98 2.90
5142 5256 2.739996 CGAAGAGGGCTGGCCAGAT 61.740 63.158 37.21 20.75 37.98 2.90
5143 5257 3.393970 CGAAGAGGGCTGGCCAGA 61.394 66.667 37.21 0.00 37.98 3.86
5150 5264 0.612174 TACAGTCAGCGAAGAGGGCT 60.612 55.000 0.00 0.00 42.61 5.19
5151 5265 0.461961 ATACAGTCAGCGAAGAGGGC 59.538 55.000 0.00 0.00 0.00 5.19
5152 5266 1.202463 CCATACAGTCAGCGAAGAGGG 60.202 57.143 0.00 0.00 0.00 4.30
5153 5267 1.804372 GCCATACAGTCAGCGAAGAGG 60.804 57.143 0.00 0.00 0.00 3.69
5154 5268 1.565305 GCCATACAGTCAGCGAAGAG 58.435 55.000 0.00 0.00 0.00 2.85
5155 5269 0.175760 GGCCATACAGTCAGCGAAGA 59.824 55.000 0.00 0.00 0.00 2.87
5156 5270 0.811616 GGGCCATACAGTCAGCGAAG 60.812 60.000 4.39 0.00 0.00 3.79
5157 5271 1.220749 GGGCCATACAGTCAGCGAA 59.779 57.895 4.39 0.00 0.00 4.70
5158 5272 2.900273 GGGCCATACAGTCAGCGA 59.100 61.111 4.39 0.00 0.00 4.93
5159 5273 2.586079 CGGGCCATACAGTCAGCG 60.586 66.667 4.39 0.00 0.00 5.18
5160 5274 2.897350 GCGGGCCATACAGTCAGC 60.897 66.667 4.39 0.00 0.00 4.26
5161 5275 1.522355 CAGCGGGCCATACAGTCAG 60.522 63.158 4.39 0.00 0.00 3.51
5162 5276 2.584064 CAGCGGGCCATACAGTCA 59.416 61.111 4.39 0.00 0.00 3.41
5163 5277 2.897350 GCAGCGGGCCATACAGTC 60.897 66.667 4.39 0.00 36.11 3.51
5164 5278 3.391665 GAGCAGCGGGCCATACAGT 62.392 63.158 4.39 0.00 46.50 3.55
5165 5279 2.590007 GAGCAGCGGGCCATACAG 60.590 66.667 4.39 0.00 46.50 2.74
5166 5280 4.175337 GGAGCAGCGGGCCATACA 62.175 66.667 4.39 0.00 46.50 2.29
5177 5291 4.749310 AAGCAGACGCCGGAGCAG 62.749 66.667 5.05 0.00 39.83 4.24
5178 5292 4.742201 GAAGCAGACGCCGGAGCA 62.742 66.667 5.05 0.00 39.83 4.26
5179 5293 2.558554 TAAGAAGCAGACGCCGGAGC 62.559 60.000 5.05 0.00 39.83 4.70
5180 5294 0.526524 CTAAGAAGCAGACGCCGGAG 60.527 60.000 5.05 3.72 39.83 4.63
5181 5295 1.511305 CTAAGAAGCAGACGCCGGA 59.489 57.895 5.05 0.00 39.83 5.14
5182 5296 1.519455 CCTAAGAAGCAGACGCCGG 60.519 63.158 0.00 0.00 39.83 6.13
5183 5297 0.389948 AACCTAAGAAGCAGACGCCG 60.390 55.000 0.00 0.00 39.83 6.46
5184 5298 1.079503 CAACCTAAGAAGCAGACGCC 58.920 55.000 0.00 0.00 39.83 5.68
5185 5299 0.444260 GCAACCTAAGAAGCAGACGC 59.556 55.000 0.00 0.00 38.99 5.19
5186 5300 2.086054 AGCAACCTAAGAAGCAGACG 57.914 50.000 0.00 0.00 0.00 4.18
5187 5301 3.669536 AGAAGCAACCTAAGAAGCAGAC 58.330 45.455 0.00 0.00 0.00 3.51
5188 5302 4.067896 CAAGAAGCAACCTAAGAAGCAGA 58.932 43.478 0.00 0.00 0.00 4.26
5189 5303 3.817647 ACAAGAAGCAACCTAAGAAGCAG 59.182 43.478 0.00 0.00 0.00 4.24
5190 5304 3.565482 CACAAGAAGCAACCTAAGAAGCA 59.435 43.478 0.00 0.00 0.00 3.91
5191 5305 3.610349 GCACAAGAAGCAACCTAAGAAGC 60.610 47.826 0.00 0.00 0.00 3.86
5192 5306 3.565482 TGCACAAGAAGCAACCTAAGAAG 59.435 43.478 0.00 0.00 39.39 2.85
5193 5307 3.315191 GTGCACAAGAAGCAACCTAAGAA 59.685 43.478 13.17 0.00 44.64 2.52
5194 5308 2.878406 GTGCACAAGAAGCAACCTAAGA 59.122 45.455 13.17 0.00 44.64 2.10
5195 5309 2.349817 CGTGCACAAGAAGCAACCTAAG 60.350 50.000 18.64 0.00 44.64 2.18
5196 5310 1.601903 CGTGCACAAGAAGCAACCTAA 59.398 47.619 18.64 0.00 44.64 2.69
5197 5311 1.225855 CGTGCACAAGAAGCAACCTA 58.774 50.000 18.64 0.00 44.64 3.08
5198 5312 1.447317 CCGTGCACAAGAAGCAACCT 61.447 55.000 18.64 0.00 44.64 3.50
5199 5313 1.008538 CCGTGCACAAGAAGCAACC 60.009 57.895 18.64 0.00 44.64 3.77
5200 5314 1.008538 CCCGTGCACAAGAAGCAAC 60.009 57.895 18.64 0.00 44.64 4.17
5201 5315 2.192861 CCCCGTGCACAAGAAGCAA 61.193 57.895 18.64 0.00 44.64 3.91
5202 5316 2.594303 CCCCGTGCACAAGAAGCA 60.594 61.111 18.64 0.00 40.19 3.91
5203 5317 4.043200 GCCCCGTGCACAAGAAGC 62.043 66.667 18.64 8.07 40.77 3.86
5204 5318 3.726517 CGCCCCGTGCACAAGAAG 61.727 66.667 18.64 0.00 41.33 2.85
5229 5343 4.388499 GGTCGATGGTGTGGCCGT 62.388 66.667 0.00 0.00 41.21 5.68
5231 5345 4.388499 ACGGTCGATGGTGTGGCC 62.388 66.667 0.00 0.00 37.90 5.36
5232 5346 3.118454 CACGGTCGATGGTGTGGC 61.118 66.667 9.82 0.00 0.00 5.01
5233 5347 2.434185 CCACGGTCGATGGTGTGG 60.434 66.667 15.00 13.51 45.17 4.17
5246 5360 3.318006 TATTGTCCCCGCCACCACG 62.318 63.158 0.00 0.00 0.00 4.94
5247 5361 1.451387 CTATTGTCCCCGCCACCAC 60.451 63.158 0.00 0.00 0.00 4.16
5248 5362 2.994699 CTATTGTCCCCGCCACCA 59.005 61.111 0.00 0.00 0.00 4.17
5249 5363 2.516225 GCTATTGTCCCCGCCACC 60.516 66.667 0.00 0.00 0.00 4.61
5250 5364 2.660258 ATCGCTATTGTCCCCGCCAC 62.660 60.000 0.00 0.00 0.00 5.01
5251 5365 1.116536 TATCGCTATTGTCCCCGCCA 61.117 55.000 0.00 0.00 0.00 5.69
5252 5366 0.389948 CTATCGCTATTGTCCCCGCC 60.390 60.000 0.00 0.00 0.00 6.13
5253 5367 0.317479 ACTATCGCTATTGTCCCCGC 59.683 55.000 0.00 0.00 0.00 6.13
5254 5368 1.611977 TCACTATCGCTATTGTCCCCG 59.388 52.381 0.00 0.00 0.00 5.73
5255 5369 2.028930 CCTCACTATCGCTATTGTCCCC 60.029 54.545 0.00 0.00 0.00 4.81
5256 5370 2.628657 ACCTCACTATCGCTATTGTCCC 59.371 50.000 0.00 0.00 0.00 4.46
5257 5371 4.323553 AACCTCACTATCGCTATTGTCC 57.676 45.455 0.00 0.00 0.00 4.02
5258 5372 4.508124 CCAAACCTCACTATCGCTATTGTC 59.492 45.833 0.00 0.00 0.00 3.18
5259 5373 4.442706 CCAAACCTCACTATCGCTATTGT 58.557 43.478 0.00 0.00 0.00 2.71
5260 5374 3.248602 GCCAAACCTCACTATCGCTATTG 59.751 47.826 0.00 0.00 0.00 1.90
5261 5375 3.118408 TGCCAAACCTCACTATCGCTATT 60.118 43.478 0.00 0.00 0.00 1.73
5262 5376 2.434336 TGCCAAACCTCACTATCGCTAT 59.566 45.455 0.00 0.00 0.00 2.97
5263 5377 1.828595 TGCCAAACCTCACTATCGCTA 59.171 47.619 0.00 0.00 0.00 4.26
5264 5378 0.613260 TGCCAAACCTCACTATCGCT 59.387 50.000 0.00 0.00 0.00 4.93
5265 5379 0.727398 GTGCCAAACCTCACTATCGC 59.273 55.000 0.00 0.00 0.00 4.58
5266 5380 0.999406 CGTGCCAAACCTCACTATCG 59.001 55.000 0.00 0.00 0.00 2.92
5267 5381 2.000447 GACGTGCCAAACCTCACTATC 59.000 52.381 0.00 0.00 0.00 2.08
5268 5382 1.671850 CGACGTGCCAAACCTCACTAT 60.672 52.381 0.00 0.00 0.00 2.12
5269 5383 0.319211 CGACGTGCCAAACCTCACTA 60.319 55.000 0.00 0.00 0.00 2.74
5270 5384 1.594293 CGACGTGCCAAACCTCACT 60.594 57.895 0.00 0.00 0.00 3.41
5271 5385 1.593209 TCGACGTGCCAAACCTCAC 60.593 57.895 0.00 0.00 0.00 3.51
5272 5386 1.593209 GTCGACGTGCCAAACCTCA 60.593 57.895 0.00 0.00 0.00 3.86
5273 5387 2.315386 GGTCGACGTGCCAAACCTC 61.315 63.158 9.92 0.00 0.00 3.85
5274 5388 2.280592 GGTCGACGTGCCAAACCT 60.281 61.111 9.92 0.00 0.00 3.50
5275 5389 1.964373 ATGGTCGACGTGCCAAACC 60.964 57.895 9.92 6.17 38.38 3.27
5276 5390 1.206578 CATGGTCGACGTGCCAAAC 59.793 57.895 9.92 0.00 38.38 2.93
5277 5391 1.963855 CCATGGTCGACGTGCCAAA 60.964 57.895 9.92 0.00 38.38 3.28
5278 5392 2.358125 CCATGGTCGACGTGCCAA 60.358 61.111 9.92 3.13 38.38 4.52
5281 5395 3.490759 CTGCCATGGTCGACGTGC 61.491 66.667 14.67 9.62 34.66 5.34
5282 5396 2.815211 CCTGCCATGGTCGACGTG 60.815 66.667 14.67 10.79 35.80 4.49
5283 5397 2.994995 TCCTGCCATGGTCGACGT 60.995 61.111 14.67 0.00 0.00 4.34
5284 5398 2.202797 CTCCTGCCATGGTCGACG 60.203 66.667 14.67 0.00 0.00 5.12
5285 5399 2.187946 CCTCCTGCCATGGTCGAC 59.812 66.667 14.67 7.13 0.00 4.20
5286 5400 3.083349 CCCTCCTGCCATGGTCGA 61.083 66.667 14.67 5.52 0.00 4.20
5287 5401 4.864334 GCCCTCCTGCCATGGTCG 62.864 72.222 14.67 4.46 0.00 4.79
5288 5402 4.864334 CGCCCTCCTGCCATGGTC 62.864 72.222 14.67 6.41 0.00 4.02
5297 5411 4.677151 AAACCCTCCCGCCCTCCT 62.677 66.667 0.00 0.00 0.00 3.69
5298 5412 3.658422 AAAACCCTCCCGCCCTCC 61.658 66.667 0.00 0.00 0.00 4.30
5299 5413 2.361230 CAAAACCCTCCCGCCCTC 60.361 66.667 0.00 0.00 0.00 4.30
5300 5414 3.979497 CCAAAACCCTCCCGCCCT 61.979 66.667 0.00 0.00 0.00 5.19
5301 5415 3.516949 TTCCAAAACCCTCCCGCCC 62.517 63.158 0.00 0.00 0.00 6.13
5302 5416 1.977009 CTTCCAAAACCCTCCCGCC 60.977 63.158 0.00 0.00 0.00 6.13
5303 5417 0.960861 CTCTTCCAAAACCCTCCCGC 60.961 60.000 0.00 0.00 0.00 6.13
5304 5418 0.322546 CCTCTTCCAAAACCCTCCCG 60.323 60.000 0.00 0.00 0.00 5.14
5305 5419 0.039764 CCCTCTTCCAAAACCCTCCC 59.960 60.000 0.00 0.00 0.00 4.30
5306 5420 0.039764 CCCCTCTTCCAAAACCCTCC 59.960 60.000 0.00 0.00 0.00 4.30
5307 5421 0.778083 ACCCCTCTTCCAAAACCCTC 59.222 55.000 0.00 0.00 0.00 4.30
5308 5422 0.482887 CACCCCTCTTCCAAAACCCT 59.517 55.000 0.00 0.00 0.00 4.34
5309 5423 0.481128 TCACCCCTCTTCCAAAACCC 59.519 55.000 0.00 0.00 0.00 4.11
5310 5424 2.375014 TTCACCCCTCTTCCAAAACC 57.625 50.000 0.00 0.00 0.00 3.27
5311 5425 3.895041 TCATTTCACCCCTCTTCCAAAAC 59.105 43.478 0.00 0.00 0.00 2.43
5312 5426 4.151883 CTCATTTCACCCCTCTTCCAAAA 58.848 43.478 0.00 0.00 0.00 2.44
5313 5427 3.500289 CCTCATTTCACCCCTCTTCCAAA 60.500 47.826 0.00 0.00 0.00 3.28
5314 5428 2.041620 CCTCATTTCACCCCTCTTCCAA 59.958 50.000 0.00 0.00 0.00 3.53
5315 5429 1.635487 CCTCATTTCACCCCTCTTCCA 59.365 52.381 0.00 0.00 0.00 3.53
5316 5430 1.636003 ACCTCATTTCACCCCTCTTCC 59.364 52.381 0.00 0.00 0.00 3.46
5317 5431 2.619074 CCACCTCATTTCACCCCTCTTC 60.619 54.545 0.00 0.00 0.00 2.87
5318 5432 1.355720 CCACCTCATTTCACCCCTCTT 59.644 52.381 0.00 0.00 0.00 2.85
5319 5433 0.995024 CCACCTCATTTCACCCCTCT 59.005 55.000 0.00 0.00 0.00 3.69
5320 5434 0.991920 TCCACCTCATTTCACCCCTC 59.008 55.000 0.00 0.00 0.00 4.30
5321 5435 1.285962 CATCCACCTCATTTCACCCCT 59.714 52.381 0.00 0.00 0.00 4.79
5322 5436 1.005924 ACATCCACCTCATTTCACCCC 59.994 52.381 0.00 0.00 0.00 4.95
5323 5437 2.094675 CACATCCACCTCATTTCACCC 58.905 52.381 0.00 0.00 0.00 4.61
5324 5438 1.474077 GCACATCCACCTCATTTCACC 59.526 52.381 0.00 0.00 0.00 4.02
5325 5439 1.474077 GGCACATCCACCTCATTTCAC 59.526 52.381 0.00 0.00 34.01 3.18
5326 5440 1.075212 TGGCACATCCACCTCATTTCA 59.925 47.619 0.00 0.00 40.72 2.69
5327 5441 1.838112 TGGCACATCCACCTCATTTC 58.162 50.000 0.00 0.00 40.72 2.17
5336 5450 4.386951 CCGTCGGTGGCACATCCA 62.387 66.667 20.82 0.00 44.52 3.41
5349 5463 3.358076 CTTCTCTGGTCCGCCCGTC 62.358 68.421 0.00 0.00 35.15 4.79
5350 5464 3.382832 CTTCTCTGGTCCGCCCGT 61.383 66.667 0.00 0.00 35.15 5.28
5351 5465 1.107538 TATCTTCTCTGGTCCGCCCG 61.108 60.000 0.00 0.00 35.15 6.13
5352 5466 1.069358 CTTATCTTCTCTGGTCCGCCC 59.931 57.143 0.00 0.00 0.00 6.13
5353 5467 1.069358 CCTTATCTTCTCTGGTCCGCC 59.931 57.143 0.00 0.00 0.00 6.13
5354 5468 1.069358 CCCTTATCTTCTCTGGTCCGC 59.931 57.143 0.00 0.00 0.00 5.54
5355 5469 2.101582 CACCCTTATCTTCTCTGGTCCG 59.898 54.545 0.00 0.00 0.00 4.79
5356 5470 2.436173 CCACCCTTATCTTCTCTGGTCC 59.564 54.545 0.00 0.00 0.00 4.46
5357 5471 2.436173 CCCACCCTTATCTTCTCTGGTC 59.564 54.545 0.00 0.00 0.00 4.02
5358 5472 2.482494 CCCACCCTTATCTTCTCTGGT 58.518 52.381 0.00 0.00 0.00 4.00
5359 5473 1.141858 GCCCACCCTTATCTTCTCTGG 59.858 57.143 0.00 0.00 0.00 3.86
5360 5474 1.202580 CGCCCACCCTTATCTTCTCTG 60.203 57.143 0.00 0.00 0.00 3.35
5361 5475 1.123928 CGCCCACCCTTATCTTCTCT 58.876 55.000 0.00 0.00 0.00 3.10
5362 5476 0.831307 ACGCCCACCCTTATCTTCTC 59.169 55.000 0.00 0.00 0.00 2.87
5363 5477 0.831307 GACGCCCACCCTTATCTTCT 59.169 55.000 0.00 0.00 0.00 2.85
5364 5478 0.529992 CGACGCCCACCCTTATCTTC 60.530 60.000 0.00 0.00 0.00 2.87
5365 5479 1.520666 CGACGCCCACCCTTATCTT 59.479 57.895 0.00 0.00 0.00 2.40
5366 5480 3.090219 GCGACGCCCACCCTTATCT 62.090 63.158 9.14 0.00 0.00 1.98
5367 5481 2.588034 GCGACGCCCACCCTTATC 60.588 66.667 9.14 0.00 0.00 1.75
5368 5482 3.395702 TGCGACGCCCACCCTTAT 61.396 61.111 18.69 0.00 0.00 1.73
5369 5483 4.382320 GTGCGACGCCCACCCTTA 62.382 66.667 18.69 0.00 0.00 2.69
5383 5497 4.505217 CATGGCTTCGACGCGTGC 62.505 66.667 20.70 14.59 0.00 5.34
5384 5498 3.071459 GACATGGCTTCGACGCGTG 62.071 63.158 20.70 9.70 0.00 5.34
5385 5499 2.809601 GACATGGCTTCGACGCGT 60.810 61.111 13.85 13.85 0.00 6.01
5386 5500 3.554692 GGACATGGCTTCGACGCG 61.555 66.667 3.53 3.53 0.00 6.01
5387 5501 3.554692 CGGACATGGCTTCGACGC 61.555 66.667 5.12 5.12 0.00 5.19
5388 5502 3.554692 GCGGACATGGCTTCGACG 61.555 66.667 0.00 0.00 0.00 5.12
5389 5503 3.554692 CGCGGACATGGCTTCGAC 61.555 66.667 0.00 0.00 0.00 4.20
5407 5521 3.428282 GGGCCAAGTACGCGTTGG 61.428 66.667 20.78 21.18 46.36 3.77
5408 5522 3.784412 CGGGCCAAGTACGCGTTG 61.784 66.667 20.78 10.24 38.51 4.10
5409 5523 2.791501 ATTCGGGCCAAGTACGCGTT 62.792 55.000 20.78 0.00 43.20 4.84
5410 5524 2.791501 AATTCGGGCCAAGTACGCGT 62.792 55.000 19.17 19.17 43.20 6.01
5411 5525 1.641123 AAATTCGGGCCAAGTACGCG 61.641 55.000 3.53 3.53 43.96 6.01
5412 5526 0.179174 CAAATTCGGGCCAAGTACGC 60.179 55.000 4.39 0.00 0.00 4.42
5413 5527 0.450184 CCAAATTCGGGCCAAGTACG 59.550 55.000 4.39 0.00 0.00 3.67
5414 5528 0.815095 CCCAAATTCGGGCCAAGTAC 59.185 55.000 4.39 0.00 40.07 2.73
5415 5529 3.274601 CCCAAATTCGGGCCAAGTA 57.725 52.632 4.39 0.00 40.07 2.24
5416 5530 4.111967 CCCAAATTCGGGCCAAGT 57.888 55.556 4.39 0.00 40.07 3.16
5423 5537 1.304052 TGACCAGGCCCAAATTCGG 60.304 57.895 0.00 0.00 0.00 4.30
5424 5538 1.883021 GTGACCAGGCCCAAATTCG 59.117 57.895 0.00 0.00 0.00 3.34
5425 5539 1.595093 CCGTGACCAGGCCCAAATTC 61.595 60.000 0.00 0.00 0.00 2.17
5426 5540 1.606313 CCGTGACCAGGCCCAAATT 60.606 57.895 0.00 0.00 0.00 1.82
5427 5541 2.035626 CCGTGACCAGGCCCAAAT 59.964 61.111 0.00 0.00 0.00 2.32
5428 5542 4.278513 CCCGTGACCAGGCCCAAA 62.279 66.667 0.00 0.00 0.00 3.28
5434 5548 2.124983 CATCTGCCCGTGACCAGG 60.125 66.667 0.00 0.00 0.00 4.45
5435 5549 0.321564 TTTCATCTGCCCGTGACCAG 60.322 55.000 0.00 0.00 0.00 4.00
5436 5550 0.109532 TTTTCATCTGCCCGTGACCA 59.890 50.000 0.00 0.00 0.00 4.02
5437 5551 1.243902 TTTTTCATCTGCCCGTGACC 58.756 50.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.