Multiple sequence alignment - TraesCS2B01G378800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G378800 chr2B 100.000 3344 0 0 1 3344 541905873 541909216 0.000000e+00 6176.0
1 TraesCS2B01G378800 chr2B 82.332 1381 176 41 1003 2342 541632102 541633455 0.000000e+00 1136.0
2 TraesCS2B01G378800 chr2B 88.679 53 5 1 399 450 470900848 470900796 2.790000e-06 63.9
3 TraesCS2B01G378800 chr2D 93.684 2264 93 27 446 2691 460708775 460711006 0.000000e+00 3343.0
4 TraesCS2B01G378800 chr2D 83.929 1176 148 22 1189 2342 460365152 460366308 0.000000e+00 1086.0
5 TraesCS2B01G378800 chr2D 85.593 118 17 0 157 274 537335050 537334933 1.260000e-24 124.0
6 TraesCS2B01G378800 chr2D 85.088 114 17 0 157 270 378737478 378737591 2.110000e-22 117.0
7 TraesCS2B01G378800 chr2A 91.996 2249 98 31 478 2660 603545393 603547625 0.000000e+00 3081.0
8 TraesCS2B01G378800 chr2A 84.139 1179 143 27 1189 2342 603375263 603376422 0.000000e+00 1101.0
9 TraesCS2B01G378800 chr2A 86.614 635 78 2 2710 3344 202776039 202775412 0.000000e+00 695.0
10 TraesCS2B01G378800 chr6B 96.082 638 22 2 2708 3344 703397605 703398240 0.000000e+00 1037.0
11 TraesCS2B01G378800 chr5B 91.181 635 53 3 2710 3344 590549251 590548620 0.000000e+00 859.0
12 TraesCS2B01G378800 chr5B 90.881 636 55 3 2710 3344 590537562 590536929 0.000000e+00 850.0
13 TraesCS2B01G378800 chr5B 83.396 265 33 10 42 305 664726341 664726595 5.580000e-58 235.0
14 TraesCS2B01G378800 chr5B 100.000 40 0 0 396 435 42938930 42938969 1.290000e-09 75.0
15 TraesCS2B01G378800 chr3D 89.881 504 45 4 2844 3344 165450257 165449757 0.000000e+00 643.0
16 TraesCS2B01G378800 chr3D 92.857 70 5 0 2711 2780 165464217 165464148 5.900000e-18 102.0
17 TraesCS2B01G378800 chr1D 93.314 344 21 2 2710 3053 18808473 18808132 1.070000e-139 507.0
18 TraesCS2B01G378800 chr7D 86.486 222 28 2 2711 2931 76340994 76341214 3.330000e-60 243.0
19 TraesCS2B01G378800 chr7D 84.564 149 23 0 157 305 46726728 46726580 7.480000e-32 148.0
20 TraesCS2B01G378800 chr7D 81.250 144 17 7 167 305 65389497 65389635 1.270000e-19 108.0
21 TraesCS2B01G378800 chr7A 86.425 221 29 1 2711 2931 80280552 80280771 1.200000e-59 241.0
22 TraesCS2B01G378800 chr7A 85.714 56 7 1 396 450 18268222 18268167 1.300000e-04 58.4
23 TraesCS2B01G378800 chr7B 83.333 264 26 11 42 305 609182098 609182343 9.330000e-56 228.0
24 TraesCS2B01G378800 chr7B 88.462 52 4 2 378 429 723943506 723943555 1.000000e-05 62.1
25 TraesCS2B01G378800 chr5D 89.506 162 16 1 115 276 551244724 551244564 1.570000e-48 204.0
26 TraesCS2B01G378800 chr5D 89.116 147 16 0 157 303 246658786 246658640 2.050000e-42 183.0
27 TraesCS2B01G378800 chr1B 82.353 187 32 1 121 307 18852477 18852292 9.600000e-36 161.0
28 TraesCS2B01G378800 chr3B 83.673 147 24 0 157 303 742982320 742982174 4.500000e-29 139.0
29 TraesCS2B01G378800 chr3B 92.000 50 2 2 303 351 61652508 61652556 5.990000e-08 69.4
30 TraesCS2B01G378800 chr3B 79.279 111 13 10 2716 2821 238502750 238502855 5.990000e-08 69.4
31 TraesCS2B01G378800 chr3B 95.238 42 2 0 394 435 729205972 729205931 2.150000e-07 67.6
32 TraesCS2B01G378800 chr3B 87.500 56 7 0 395 450 105302414 105302359 7.740000e-07 65.8
33 TraesCS2B01G378800 chr5A 100.000 40 0 0 396 435 472108898 472108937 1.290000e-09 75.0
34 TraesCS2B01G378800 chr5A 90.196 51 3 2 302 351 464240739 464240788 7.740000e-07 65.8
35 TraesCS2B01G378800 chr5A 88.235 51 4 2 302 351 238431327 238431278 3.600000e-05 60.2
36 TraesCS2B01G378800 chr6A 86.667 60 8 0 391 450 19524489 19524548 2.150000e-07 67.6
37 TraesCS2B01G378800 chr4D 97.368 38 1 0 395 432 401774612 401774649 7.740000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G378800 chr2B 541905873 541909216 3343 False 6176 6176 100.000 1 3344 1 chr2B.!!$F2 3343
1 TraesCS2B01G378800 chr2B 541632102 541633455 1353 False 1136 1136 82.332 1003 2342 1 chr2B.!!$F1 1339
2 TraesCS2B01G378800 chr2D 460708775 460711006 2231 False 3343 3343 93.684 446 2691 1 chr2D.!!$F3 2245
3 TraesCS2B01G378800 chr2D 460365152 460366308 1156 False 1086 1086 83.929 1189 2342 1 chr2D.!!$F2 1153
4 TraesCS2B01G378800 chr2A 603545393 603547625 2232 False 3081 3081 91.996 478 2660 1 chr2A.!!$F2 2182
5 TraesCS2B01G378800 chr2A 603375263 603376422 1159 False 1101 1101 84.139 1189 2342 1 chr2A.!!$F1 1153
6 TraesCS2B01G378800 chr2A 202775412 202776039 627 True 695 695 86.614 2710 3344 1 chr2A.!!$R1 634
7 TraesCS2B01G378800 chr6B 703397605 703398240 635 False 1037 1037 96.082 2708 3344 1 chr6B.!!$F1 636
8 TraesCS2B01G378800 chr5B 590548620 590549251 631 True 859 859 91.181 2710 3344 1 chr5B.!!$R2 634
9 TraesCS2B01G378800 chr5B 590536929 590537562 633 True 850 850 90.881 2710 3344 1 chr5B.!!$R1 634
10 TraesCS2B01G378800 chr3D 165449757 165450257 500 True 643 643 89.881 2844 3344 1 chr3D.!!$R1 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
129 130 0.030235 TCGGAGCCGAATGTGTATCG 59.970 55.0 9.50 0.0 46.01 2.92 F
242 243 0.031994 GGCGCACAAAAACTCATGGT 59.968 50.0 10.83 0.0 0.00 3.55 F
441 442 0.040425 CGTTTTTCAAGCTGGGACGG 60.040 55.0 0.00 0.0 38.10 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1516 1585 0.042731 TAGAAGTACTGCAGCCCCCT 59.957 55.000 15.27 7.5 0.0 4.79 R
2064 2142 1.272769 GTGAAGTAGTTGCCGGAGAGT 59.727 52.381 5.05 0.0 0.0 3.24 R
2402 2496 0.963225 GCCGTGCTTTTCCCCTTTTA 59.037 50.000 0.00 0.0 0.0 1.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.365408 CGTAGGAGGAGGTTGTGAAC 57.635 55.000 0.00 0.00 0.00 3.18
42 43 1.893801 CGTAGGAGGAGGTTGTGAACT 59.106 52.381 0.00 0.00 0.00 3.01
43 44 3.087031 CGTAGGAGGAGGTTGTGAACTA 58.913 50.000 0.00 0.00 0.00 2.24
44 45 3.700038 CGTAGGAGGAGGTTGTGAACTAT 59.300 47.826 0.00 0.00 0.00 2.12
45 46 4.202030 CGTAGGAGGAGGTTGTGAACTATC 60.202 50.000 0.00 0.00 0.00 2.08
46 47 4.067944 AGGAGGAGGTTGTGAACTATCT 57.932 45.455 0.00 0.00 0.00 1.98
47 48 5.208294 AGGAGGAGGTTGTGAACTATCTA 57.792 43.478 0.00 0.00 0.00 1.98
48 49 5.782925 AGGAGGAGGTTGTGAACTATCTAT 58.217 41.667 0.00 0.00 0.00 1.98
49 50 5.600484 AGGAGGAGGTTGTGAACTATCTATG 59.400 44.000 0.00 0.00 0.00 2.23
50 51 5.283457 AGGAGGTTGTGAACTATCTATGC 57.717 43.478 0.00 0.00 0.00 3.14
51 52 4.716784 AGGAGGTTGTGAACTATCTATGCA 59.283 41.667 0.00 0.00 0.00 3.96
52 53 4.811557 GGAGGTTGTGAACTATCTATGCAC 59.188 45.833 0.00 0.00 0.00 4.57
53 54 5.395768 GGAGGTTGTGAACTATCTATGCACT 60.396 44.000 0.00 0.00 0.00 4.40
54 55 6.183360 GGAGGTTGTGAACTATCTATGCACTA 60.183 42.308 0.00 0.00 0.00 2.74
55 56 7.366847 AGGTTGTGAACTATCTATGCACTAT 57.633 36.000 0.00 0.00 0.00 2.12
56 57 7.437748 AGGTTGTGAACTATCTATGCACTATC 58.562 38.462 0.00 0.00 0.00 2.08
57 58 7.288852 AGGTTGTGAACTATCTATGCACTATCT 59.711 37.037 0.00 0.00 0.00 1.98
58 59 8.577296 GGTTGTGAACTATCTATGCACTATCTA 58.423 37.037 0.00 0.00 0.00 1.98
61 62 9.301897 TGTGAACTATCTATGCACTATCTATGT 57.698 33.333 0.00 0.00 0.00 2.29
66 67 9.839817 ACTATCTATGCACTATCTATGTATCGT 57.160 33.333 0.00 0.00 0.00 3.73
113 114 6.680874 ATTTATCTACGCCTATAGAGTCGG 57.319 41.667 0.00 0.00 34.68 4.79
114 115 3.977134 ATCTACGCCTATAGAGTCGGA 57.023 47.619 0.00 4.37 34.68 4.55
115 116 3.316071 TCTACGCCTATAGAGTCGGAG 57.684 52.381 0.00 7.95 34.41 4.63
116 117 1.733360 CTACGCCTATAGAGTCGGAGC 59.267 57.143 0.00 0.00 0.00 4.70
117 118 0.890090 ACGCCTATAGAGTCGGAGCC 60.890 60.000 0.00 0.00 0.00 4.70
118 119 1.877367 GCCTATAGAGTCGGAGCCG 59.123 63.158 0.00 1.74 41.35 5.52
119 120 0.605860 GCCTATAGAGTCGGAGCCGA 60.606 60.000 7.66 7.66 46.87 5.54
128 129 3.959478 TCGGAGCCGAATGTGTATC 57.041 52.632 9.50 0.00 46.01 2.24
129 130 0.030235 TCGGAGCCGAATGTGTATCG 59.970 55.000 9.50 0.00 46.01 2.92
130 131 0.030235 CGGAGCCGAATGTGTATCGA 59.970 55.000 2.00 0.00 42.76 3.59
131 132 1.772182 GGAGCCGAATGTGTATCGAG 58.228 55.000 0.00 0.00 42.76 4.04
132 133 1.067212 GGAGCCGAATGTGTATCGAGT 59.933 52.381 0.00 0.00 42.76 4.18
133 134 2.386249 GAGCCGAATGTGTATCGAGTC 58.614 52.381 0.00 0.00 42.76 3.36
134 135 1.749063 AGCCGAATGTGTATCGAGTCA 59.251 47.619 0.00 0.00 42.76 3.41
135 136 2.362397 AGCCGAATGTGTATCGAGTCAT 59.638 45.455 0.00 0.00 42.76 3.06
136 137 3.568430 AGCCGAATGTGTATCGAGTCATA 59.432 43.478 0.00 0.00 42.76 2.15
137 138 3.914966 GCCGAATGTGTATCGAGTCATAG 59.085 47.826 0.00 0.00 42.76 2.23
138 139 4.556898 GCCGAATGTGTATCGAGTCATAGT 60.557 45.833 0.00 0.00 42.76 2.12
139 140 5.334646 GCCGAATGTGTATCGAGTCATAGTA 60.335 44.000 0.00 0.00 42.76 1.82
140 141 6.307915 CCGAATGTGTATCGAGTCATAGTAG 58.692 44.000 0.00 0.00 42.76 2.57
141 142 6.147328 CCGAATGTGTATCGAGTCATAGTAGA 59.853 42.308 0.00 0.00 42.76 2.59
142 143 7.307811 CCGAATGTGTATCGAGTCATAGTAGAA 60.308 40.741 0.00 0.00 42.76 2.10
143 144 8.068380 CGAATGTGTATCGAGTCATAGTAGAAA 58.932 37.037 0.00 0.00 42.76 2.52
144 145 9.388346 GAATGTGTATCGAGTCATAGTAGAAAG 57.612 37.037 0.00 0.00 0.00 2.62
145 146 7.260558 TGTGTATCGAGTCATAGTAGAAAGG 57.739 40.000 0.00 0.00 0.00 3.11
146 147 7.052248 TGTGTATCGAGTCATAGTAGAAAGGA 58.948 38.462 0.00 0.00 0.00 3.36
147 148 7.226918 TGTGTATCGAGTCATAGTAGAAAGGAG 59.773 40.741 0.00 0.00 0.00 3.69
148 149 7.441760 GTGTATCGAGTCATAGTAGAAAGGAGA 59.558 40.741 0.00 0.00 0.00 3.71
149 150 7.991460 TGTATCGAGTCATAGTAGAAAGGAGAA 59.009 37.037 0.00 0.00 0.00 2.87
150 151 6.680874 TCGAGTCATAGTAGAAAGGAGAAC 57.319 41.667 0.00 0.00 0.00 3.01
151 152 6.178324 TCGAGTCATAGTAGAAAGGAGAACA 58.822 40.000 0.00 0.00 0.00 3.18
152 153 6.657966 TCGAGTCATAGTAGAAAGGAGAACAA 59.342 38.462 0.00 0.00 0.00 2.83
153 154 7.176165 TCGAGTCATAGTAGAAAGGAGAACAAA 59.824 37.037 0.00 0.00 0.00 2.83
154 155 7.976734 CGAGTCATAGTAGAAAGGAGAACAAAT 59.023 37.037 0.00 0.00 0.00 2.32
160 161 9.915629 ATAGTAGAAAGGAGAACAAATATAGCG 57.084 33.333 0.00 0.00 0.00 4.26
161 162 5.993106 AGAAAGGAGAACAAATATAGCGC 57.007 39.130 0.00 0.00 0.00 5.92
162 163 4.508124 AGAAAGGAGAACAAATATAGCGCG 59.492 41.667 0.00 0.00 0.00 6.86
163 164 3.454371 AGGAGAACAAATATAGCGCGT 57.546 42.857 8.43 0.00 0.00 6.01
164 165 3.793559 AGGAGAACAAATATAGCGCGTT 58.206 40.909 8.43 3.54 0.00 4.84
165 166 3.802685 AGGAGAACAAATATAGCGCGTTC 59.197 43.478 8.43 12.35 36.95 3.95
166 167 3.361724 GGAGAACAAATATAGCGCGTTCG 60.362 47.826 8.43 0.00 40.63 3.95
192 193 3.470567 GCTCGCGCGCGCTATATT 61.471 61.111 45.97 0.00 39.59 1.28
193 194 3.000080 GCTCGCGCGCGCTATATTT 62.000 57.895 45.97 0.00 39.59 1.40
194 195 1.487231 CTCGCGCGCGCTATATTTT 59.513 52.632 45.97 0.00 39.59 1.82
195 196 0.782077 CTCGCGCGCGCTATATTTTG 60.782 55.000 45.97 30.36 39.59 2.44
196 197 2.409811 CGCGCGCGCTATATTTTGC 61.410 57.895 45.97 20.58 39.32 3.68
197 198 1.368731 GCGCGCGCTATATTTTGCA 60.369 52.632 44.38 0.00 38.26 4.08
198 199 1.323136 GCGCGCGCTATATTTTGCAG 61.323 55.000 44.38 9.78 38.26 4.41
199 200 1.323136 CGCGCGCTATATTTTGCAGC 61.323 55.000 30.48 0.00 0.00 5.25
204 205 2.300623 GCTATATTTTGCAGCGGTCG 57.699 50.000 0.00 0.00 0.00 4.79
205 206 1.660333 GCTATATTTTGCAGCGGTCGC 60.660 52.381 7.32 7.32 42.33 5.19
233 234 3.959975 GCTCCACGGCGCACAAAA 61.960 61.111 10.83 0.00 0.00 2.44
234 235 2.718731 CTCCACGGCGCACAAAAA 59.281 55.556 10.83 0.00 0.00 1.94
235 236 1.657181 CTCCACGGCGCACAAAAAC 60.657 57.895 10.83 0.00 0.00 2.43
236 237 2.058829 CTCCACGGCGCACAAAAACT 62.059 55.000 10.83 0.00 0.00 2.66
237 238 1.657181 CCACGGCGCACAAAAACTC 60.657 57.895 10.83 0.00 0.00 3.01
238 239 1.063327 CACGGCGCACAAAAACTCA 59.937 52.632 10.83 0.00 0.00 3.41
239 240 0.317770 CACGGCGCACAAAAACTCAT 60.318 50.000 10.83 0.00 0.00 2.90
240 241 0.317770 ACGGCGCACAAAAACTCATG 60.318 50.000 10.83 0.00 0.00 3.07
241 242 1.003262 CGGCGCACAAAAACTCATGG 61.003 55.000 10.83 0.00 0.00 3.66
242 243 0.031994 GGCGCACAAAAACTCATGGT 59.968 50.000 10.83 0.00 0.00 3.55
243 244 1.537990 GGCGCACAAAAACTCATGGTT 60.538 47.619 10.83 0.00 40.28 3.67
244 245 1.786579 GCGCACAAAAACTCATGGTTC 59.213 47.619 0.30 0.00 37.12 3.62
245 246 2.393764 CGCACAAAAACTCATGGTTCC 58.606 47.619 0.00 0.00 37.12 3.62
246 247 2.223688 CGCACAAAAACTCATGGTTCCA 60.224 45.455 0.00 0.00 37.12 3.53
247 248 3.736433 CGCACAAAAACTCATGGTTCCAA 60.736 43.478 0.00 0.00 37.12 3.53
248 249 3.555547 GCACAAAAACTCATGGTTCCAAC 59.444 43.478 0.00 0.00 37.12 3.77
249 250 3.796178 CACAAAAACTCATGGTTCCAACG 59.204 43.478 0.00 0.00 37.12 4.10
250 251 3.697045 ACAAAAACTCATGGTTCCAACGA 59.303 39.130 0.00 0.00 37.12 3.85
251 252 4.340950 ACAAAAACTCATGGTTCCAACGAT 59.659 37.500 0.00 0.00 37.12 3.73
252 253 4.503741 AAAACTCATGGTTCCAACGATG 57.496 40.909 7.85 7.85 43.71 3.84
253 254 2.859165 ACTCATGGTTCCAACGATGT 57.141 45.000 12.49 0.00 43.12 3.06
254 255 3.973206 ACTCATGGTTCCAACGATGTA 57.027 42.857 12.49 2.12 43.12 2.29
255 256 4.280436 ACTCATGGTTCCAACGATGTAA 57.720 40.909 12.49 0.00 43.12 2.41
256 257 4.647611 ACTCATGGTTCCAACGATGTAAA 58.352 39.130 12.49 0.00 43.12 2.01
257 258 4.454504 ACTCATGGTTCCAACGATGTAAAC 59.545 41.667 12.49 0.00 43.12 2.01
258 259 3.433957 TCATGGTTCCAACGATGTAAACG 59.566 43.478 12.49 0.00 43.12 3.60
270 271 5.250332 ACGATGTAAACGTATTTTTAGCGC 58.750 37.500 0.00 0.00 45.94 5.92
271 272 4.367966 CGATGTAAACGTATTTTTAGCGCG 59.632 41.667 0.00 0.00 0.00 6.86
272 273 3.406355 TGTAAACGTATTTTTAGCGCGC 58.594 40.909 26.66 26.66 0.00 6.86
273 274 1.886037 AAACGTATTTTTAGCGCGCC 58.114 45.000 30.33 10.31 0.00 6.53
274 275 0.797542 AACGTATTTTTAGCGCGCCA 59.202 45.000 30.33 12.88 0.00 5.69
275 276 0.095762 ACGTATTTTTAGCGCGCCAC 59.904 50.000 30.33 12.96 0.00 5.01
277 278 0.095762 GTATTTTTAGCGCGCCACGT 59.904 50.000 30.33 12.34 46.11 4.49
278 279 0.095589 TATTTTTAGCGCGCCACGTG 59.904 50.000 30.33 9.08 46.11 4.49
279 280 1.847890 ATTTTTAGCGCGCCACGTGT 61.848 50.000 30.33 11.01 46.11 4.49
280 281 2.049475 TTTTTAGCGCGCCACGTGTT 62.049 50.000 30.33 10.14 46.11 3.32
281 282 2.703425 TTTTAGCGCGCCACGTGTTG 62.703 55.000 30.33 7.37 46.11 3.33
295 296 4.430423 GTTGCGCGCCTGTCGAAG 62.430 66.667 30.77 0.00 41.67 3.79
296 297 4.656117 TTGCGCGCCTGTCGAAGA 62.656 61.111 30.77 2.53 41.67 2.87
297 298 3.932580 TTGCGCGCCTGTCGAAGAT 62.933 57.895 30.77 0.00 40.67 2.40
298 299 3.918220 GCGCGCCTGTCGAAGATG 61.918 66.667 23.24 0.00 40.67 2.90
299 300 3.918220 CGCGCCTGTCGAAGATGC 61.918 66.667 0.00 0.00 40.67 3.91
300 301 2.510238 GCGCCTGTCGAAGATGCT 60.510 61.111 0.00 0.00 40.67 3.79
301 302 2.520904 GCGCCTGTCGAAGATGCTC 61.521 63.158 0.00 0.00 40.67 4.26
302 303 1.140589 CGCCTGTCGAAGATGCTCT 59.859 57.895 0.00 0.00 40.67 4.09
303 304 0.459237 CGCCTGTCGAAGATGCTCTT 60.459 55.000 0.00 0.00 40.67 2.85
304 305 1.202302 CGCCTGTCGAAGATGCTCTTA 60.202 52.381 0.00 0.00 40.67 2.10
305 306 2.544694 CGCCTGTCGAAGATGCTCTTAT 60.545 50.000 0.00 0.00 40.67 1.73
306 307 2.799412 GCCTGTCGAAGATGCTCTTATG 59.201 50.000 0.00 0.00 40.67 1.90
307 308 3.388308 CCTGTCGAAGATGCTCTTATGG 58.612 50.000 0.00 0.00 40.67 2.74
308 309 3.388308 CTGTCGAAGATGCTCTTATGGG 58.612 50.000 0.00 0.00 40.67 4.00
309 310 3.031013 TGTCGAAGATGCTCTTATGGGA 58.969 45.455 0.00 0.00 40.67 4.37
310 311 3.068732 TGTCGAAGATGCTCTTATGGGAG 59.931 47.826 0.00 0.00 40.67 4.30
311 312 3.319405 GTCGAAGATGCTCTTATGGGAGA 59.681 47.826 0.00 0.00 40.67 3.71
312 313 3.960755 TCGAAGATGCTCTTATGGGAGAA 59.039 43.478 0.00 0.00 36.73 2.87
313 314 4.038522 TCGAAGATGCTCTTATGGGAGAAG 59.961 45.833 0.00 0.00 36.73 2.85
314 315 3.767902 AGATGCTCTTATGGGAGAAGC 57.232 47.619 0.00 0.00 35.52 3.86
315 316 3.316501 AGATGCTCTTATGGGAGAAGCT 58.683 45.455 0.00 0.00 33.23 3.74
316 317 2.996249 TGCTCTTATGGGAGAAGCTG 57.004 50.000 0.00 0.00 35.52 4.24
317 318 1.487976 TGCTCTTATGGGAGAAGCTGG 59.512 52.381 0.00 0.00 35.52 4.85
318 319 1.202746 GCTCTTATGGGAGAAGCTGGG 60.203 57.143 0.00 0.00 35.52 4.45
319 320 2.402564 CTCTTATGGGAGAAGCTGGGA 58.597 52.381 0.00 0.00 35.52 4.37
320 321 2.368221 CTCTTATGGGAGAAGCTGGGAG 59.632 54.545 0.00 0.00 35.52 4.30
321 322 1.419387 CTTATGGGAGAAGCTGGGAGG 59.581 57.143 0.00 0.00 0.00 4.30
322 323 0.642156 TATGGGAGAAGCTGGGAGGA 59.358 55.000 0.00 0.00 0.00 3.71
323 324 0.693767 ATGGGAGAAGCTGGGAGGAG 60.694 60.000 0.00 0.00 0.00 3.69
324 325 2.069430 GGGAGAAGCTGGGAGGAGG 61.069 68.421 0.00 0.00 0.00 4.30
325 326 1.306568 GGAGAAGCTGGGAGGAGGT 60.307 63.158 0.00 0.00 0.00 3.85
326 327 1.621672 GGAGAAGCTGGGAGGAGGTG 61.622 65.000 0.00 0.00 0.00 4.00
327 328 1.614824 AGAAGCTGGGAGGAGGTGG 60.615 63.158 0.00 0.00 0.00 4.61
328 329 3.334054 AAGCTGGGAGGAGGTGGC 61.334 66.667 0.00 0.00 0.00 5.01
329 330 3.880033 AAGCTGGGAGGAGGTGGCT 62.880 63.158 0.00 0.00 0.00 4.75
330 331 3.334054 GCTGGGAGGAGGTGGCTT 61.334 66.667 0.00 0.00 0.00 4.35
331 332 1.995626 GCTGGGAGGAGGTGGCTTA 60.996 63.158 0.00 0.00 0.00 3.09
332 333 1.348775 GCTGGGAGGAGGTGGCTTAT 61.349 60.000 0.00 0.00 0.00 1.73
333 334 1.216990 CTGGGAGGAGGTGGCTTATT 58.783 55.000 0.00 0.00 0.00 1.40
334 335 1.566231 CTGGGAGGAGGTGGCTTATTT 59.434 52.381 0.00 0.00 0.00 1.40
335 336 2.000048 TGGGAGGAGGTGGCTTATTTT 59.000 47.619 0.00 0.00 0.00 1.82
336 337 2.381961 TGGGAGGAGGTGGCTTATTTTT 59.618 45.455 0.00 0.00 0.00 1.94
364 365 5.999721 CCACACAAAAATGGCCTTAAAATG 58.000 37.500 3.32 0.00 0.00 2.32
365 366 5.530543 CCACACAAAAATGGCCTTAAAATGT 59.469 36.000 3.32 0.00 0.00 2.71
366 367 6.428799 CACACAAAAATGGCCTTAAAATGTG 58.571 36.000 19.46 19.46 40.93 3.21
367 368 6.038050 CACACAAAAATGGCCTTAAAATGTGT 59.962 34.615 20.41 20.41 46.84 3.72
368 369 6.601217 ACACAAAAATGGCCTTAAAATGTGTT 59.399 30.769 20.41 10.40 44.43 3.32
369 370 7.770897 ACACAAAAATGGCCTTAAAATGTGTTA 59.229 29.630 20.41 0.00 44.43 2.41
370 371 8.616076 CACAAAAATGGCCTTAAAATGTGTTAA 58.384 29.630 3.32 0.00 32.99 2.01
371 372 9.178758 ACAAAAATGGCCTTAAAATGTGTTAAA 57.821 25.926 3.32 0.00 0.00 1.52
374 375 7.737972 AATGGCCTTAAAATGTGTTAAAACC 57.262 32.000 3.32 0.00 0.00 3.27
375 376 5.612351 TGGCCTTAAAATGTGTTAAAACCC 58.388 37.500 3.32 0.00 0.00 4.11
376 377 5.130477 TGGCCTTAAAATGTGTTAAAACCCA 59.870 36.000 3.32 0.00 0.00 4.51
377 378 6.183361 TGGCCTTAAAATGTGTTAAAACCCAT 60.183 34.615 3.32 0.00 0.00 4.00
378 379 6.712998 GGCCTTAAAATGTGTTAAAACCCATT 59.287 34.615 0.00 0.00 38.37 3.16
379 380 7.308288 GGCCTTAAAATGTGTTAAAACCCATTG 60.308 37.037 4.63 0.00 37.14 2.82
380 381 7.308288 GCCTTAAAATGTGTTAAAACCCATTGG 60.308 37.037 4.63 0.00 37.14 3.16
405 406 6.651975 ATAAATACCAGAGTACTTCCTCCG 57.348 41.667 0.00 0.00 31.53 4.63
406 407 3.666345 ATACCAGAGTACTTCCTCCGT 57.334 47.619 0.00 0.00 31.53 4.69
407 408 1.836802 ACCAGAGTACTTCCTCCGTC 58.163 55.000 0.00 0.00 31.53 4.79
408 409 1.355043 ACCAGAGTACTTCCTCCGTCT 59.645 52.381 0.00 0.00 31.53 4.18
409 410 2.018515 CCAGAGTACTTCCTCCGTCTC 58.981 57.143 0.00 0.00 31.53 3.36
410 411 2.618302 CCAGAGTACTTCCTCCGTCTCA 60.618 54.545 0.00 0.00 31.53 3.27
411 412 3.283751 CAGAGTACTTCCTCCGTCTCAT 58.716 50.000 0.00 0.00 31.53 2.90
412 413 4.452825 CAGAGTACTTCCTCCGTCTCATA 58.547 47.826 0.00 0.00 31.53 2.15
413 414 4.882427 CAGAGTACTTCCTCCGTCTCATAA 59.118 45.833 0.00 0.00 31.53 1.90
414 415 5.533154 CAGAGTACTTCCTCCGTCTCATAAT 59.467 44.000 0.00 0.00 31.53 1.28
415 416 6.711194 CAGAGTACTTCCTCCGTCTCATAATA 59.289 42.308 0.00 0.00 31.53 0.98
416 417 7.392113 CAGAGTACTTCCTCCGTCTCATAATAT 59.608 40.741 0.00 0.00 31.53 1.28
417 418 8.604184 AGAGTACTTCCTCCGTCTCATAATATA 58.396 37.037 0.00 0.00 31.53 0.86
418 419 9.228949 GAGTACTTCCTCCGTCTCATAATATAA 57.771 37.037 0.00 0.00 0.00 0.98
419 420 9.233649 AGTACTTCCTCCGTCTCATAATATAAG 57.766 37.037 0.00 0.00 0.00 1.73
420 421 9.228949 GTACTTCCTCCGTCTCATAATATAAGA 57.771 37.037 0.00 0.00 0.00 2.10
421 422 8.707796 ACTTCCTCCGTCTCATAATATAAGAA 57.292 34.615 0.00 0.00 0.00 2.52
422 423 8.578151 ACTTCCTCCGTCTCATAATATAAGAAC 58.422 37.037 0.00 0.00 0.00 3.01
423 424 7.142306 TCCTCCGTCTCATAATATAAGAACG 57.858 40.000 0.00 0.00 0.00 3.95
424 425 6.713903 TCCTCCGTCTCATAATATAAGAACGT 59.286 38.462 0.00 0.00 0.00 3.99
425 426 7.230108 TCCTCCGTCTCATAATATAAGAACGTT 59.770 37.037 0.00 0.00 0.00 3.99
426 427 7.866393 CCTCCGTCTCATAATATAAGAACGTTT 59.134 37.037 0.46 0.00 0.00 3.60
427 428 9.245962 CTCCGTCTCATAATATAAGAACGTTTT 57.754 33.333 0.46 0.00 0.00 2.43
428 429 9.590451 TCCGTCTCATAATATAAGAACGTTTTT 57.410 29.630 9.22 9.22 0.00 1.94
429 430 9.845305 CCGTCTCATAATATAAGAACGTTTTTC 57.155 33.333 7.42 0.00 0.00 2.29
437 438 3.436700 AAGAACGTTTTTCAAGCTGGG 57.563 42.857 0.46 0.00 0.00 4.45
438 439 2.650322 AGAACGTTTTTCAAGCTGGGA 58.350 42.857 0.46 0.00 0.00 4.37
439 440 2.357952 AGAACGTTTTTCAAGCTGGGAC 59.642 45.455 0.46 0.00 0.00 4.46
440 441 0.661020 ACGTTTTTCAAGCTGGGACG 59.339 50.000 0.00 0.00 35.39 4.79
441 442 0.040425 CGTTTTTCAAGCTGGGACGG 60.040 55.000 0.00 0.00 38.10 4.79
442 443 1.314730 GTTTTTCAAGCTGGGACGGA 58.685 50.000 0.00 0.00 36.31 4.69
443 444 1.266989 GTTTTTCAAGCTGGGACGGAG 59.733 52.381 0.00 0.00 36.31 4.63
444 445 0.250727 TTTTCAAGCTGGGACGGAGG 60.251 55.000 0.00 0.00 36.31 4.30
454 455 3.036091 CTGGGACGGAGGGAGTATTTTA 58.964 50.000 0.00 0.00 36.31 1.52
457 458 4.475747 TGGGACGGAGGGAGTATTTTATTT 59.524 41.667 0.00 0.00 0.00 1.40
458 459 5.044698 TGGGACGGAGGGAGTATTTTATTTT 60.045 40.000 0.00 0.00 0.00 1.82
459 460 5.298527 GGGACGGAGGGAGTATTTTATTTTG 59.701 44.000 0.00 0.00 0.00 2.44
492 493 0.549950 TACCGGAGTAGGGAGTGGAG 59.450 60.000 9.46 0.00 35.02 3.86
499 500 0.755686 GTAGGGAGTGGAGCCATCAG 59.244 60.000 0.00 0.00 0.00 2.90
550 552 1.074951 GCAGGCCCAAGTAACTGGT 59.925 57.895 0.00 0.00 34.33 4.00
551 553 0.539669 GCAGGCCCAAGTAACTGGTT 60.540 55.000 0.00 0.00 34.33 3.67
643 646 2.648102 CGTCGCGCTCTACCTTCG 60.648 66.667 5.56 0.00 0.00 3.79
651 654 1.654954 GCTCTACCTTCGTCAGCGGA 61.655 60.000 0.00 0.00 38.89 5.54
732 735 2.498167 CAGCAGCTAACCACAGAAAGT 58.502 47.619 0.00 0.00 0.00 2.66
756 771 5.087323 TCATCTACCAGAGAAAGTTCCAGT 58.913 41.667 0.00 0.00 37.85 4.00
784 806 4.478699 CGAAACTATACGTGGACAAGTCA 58.521 43.478 0.00 0.00 0.00 3.41
811 833 4.650754 AGAGTACGTATAAACTGCAGGG 57.349 45.455 19.93 0.00 0.00 4.45
1045 1090 0.387878 CGCTCTCTTCTGCGTCTTGT 60.388 55.000 0.00 0.00 46.09 3.16
1376 1445 3.849953 GCGGCCGATCAACGTCAC 61.850 66.667 33.48 2.06 40.78 3.67
1419 1488 0.182775 ACCTCAACGGCTTCAACCTT 59.817 50.000 0.00 0.00 35.61 3.50
1548 1617 1.465794 ACTTCTACGAGCTGGACCTC 58.534 55.000 1.44 0.00 0.00 3.85
1707 1776 2.228822 GGCCATCTTCGTCAACAACAAT 59.771 45.455 0.00 0.00 0.00 2.71
2064 2142 4.680237 CGCCTCGCCAACCTCACA 62.680 66.667 0.00 0.00 0.00 3.58
2387 2481 4.415332 CAGCTCCACGTACGCGGT 62.415 66.667 20.98 7.65 43.45 5.68
2388 2482 2.747460 AGCTCCACGTACGCGGTA 60.747 61.111 20.98 8.02 43.45 4.02
2389 2483 2.577911 GCTCCACGTACGCGGTAC 60.578 66.667 20.98 11.18 43.45 3.34
2390 2484 2.869646 CTCCACGTACGCGGTACA 59.130 61.111 20.98 2.23 43.45 2.90
2391 2485 1.512734 CTCCACGTACGCGGTACAC 60.513 63.158 20.98 1.34 43.45 2.90
2392 2486 1.915614 CTCCACGTACGCGGTACACT 61.916 60.000 20.98 0.00 43.45 3.55
2393 2487 1.798725 CCACGTACGCGGTACACTG 60.799 63.158 16.72 3.06 43.45 3.66
2394 2488 1.081906 CACGTACGCGGTACACTGT 60.082 57.895 16.72 2.00 43.45 3.55
2395 2489 0.661187 CACGTACGCGGTACACTGTT 60.661 55.000 16.72 0.00 43.45 3.16
2396 2490 0.661187 ACGTACGCGGTACACTGTTG 60.661 55.000 16.72 0.04 43.45 3.33
2397 2491 1.777199 GTACGCGGTACACTGTTGC 59.223 57.895 12.47 0.00 38.71 4.17
2398 2492 0.665369 GTACGCGGTACACTGTTGCT 60.665 55.000 12.47 0.00 38.71 3.91
2399 2493 0.880441 TACGCGGTACACTGTTGCTA 59.120 50.000 12.47 0.00 0.00 3.49
2400 2494 0.388134 ACGCGGTACACTGTTGCTAG 60.388 55.000 12.47 0.00 0.00 3.42
2401 2495 1.683790 CGCGGTACACTGTTGCTAGC 61.684 60.000 8.10 8.10 0.00 3.42
2402 2496 0.389948 GCGGTACACTGTTGCTAGCT 60.390 55.000 17.23 0.00 0.00 3.32
2405 2499 3.581755 CGGTACACTGTTGCTAGCTAAA 58.418 45.455 17.23 1.98 0.00 1.85
2410 2504 2.749621 CACTGTTGCTAGCTAAAAGGGG 59.250 50.000 17.23 6.48 0.00 4.79
2411 2505 2.642807 ACTGTTGCTAGCTAAAAGGGGA 59.357 45.455 17.23 0.00 0.00 4.81
2419 2513 1.886542 AGCTAAAAGGGGAAAAGCACG 59.113 47.619 0.00 0.00 35.63 5.34
2469 2568 2.892334 GCTGCTTGGTCGTTGCGAA 61.892 57.895 0.00 0.00 37.72 4.70
2479 2578 2.671177 CGTTGCGAAGGCTGGTCTG 61.671 63.158 0.00 0.00 40.82 3.51
2485 2584 1.754745 GAAGGCTGGTCTGTGTCCA 59.245 57.895 0.00 0.00 0.00 4.02
2486 2585 0.326264 GAAGGCTGGTCTGTGTCCAT 59.674 55.000 0.00 0.00 34.26 3.41
2501 2601 5.046529 TGTGTCCATATTGTTGTTGTTTGC 58.953 37.500 0.00 0.00 0.00 3.68
2508 2608 6.906143 CCATATTGTTGTTGTTTGCACTTTTG 59.094 34.615 0.00 0.00 0.00 2.44
2509 2609 4.739046 TTGTTGTTGTTTGCACTTTTGG 57.261 36.364 0.00 0.00 0.00 3.28
2549 2650 4.812626 CCACTATTACGGTCCGCTTAATTT 59.187 41.667 12.28 0.00 0.00 1.82
2584 2689 0.681733 CGGCATGTCTGGCTAGGTAT 59.318 55.000 0.00 0.00 45.42 2.73
2684 2791 8.994429 TTTGAAACTAAGACAAAAGATTTGCA 57.006 26.923 2.88 0.00 31.94 4.08
2685 2792 9.598517 TTTGAAACTAAGACAAAAGATTTGCAT 57.401 25.926 2.88 0.00 31.94 3.96
2686 2793 9.598517 TTGAAACTAAGACAAAAGATTTGCATT 57.401 25.926 2.88 1.65 0.00 3.56
2690 2797 9.598517 AACTAAGACAAAAGATTTGCATTTTCA 57.401 25.926 2.88 0.00 0.00 2.69
2691 2798 9.598517 ACTAAGACAAAAGATTTGCATTTTCAA 57.401 25.926 2.88 0.00 0.00 2.69
2693 2800 8.721019 AAGACAAAAGATTTGCATTTTCAAGA 57.279 26.923 2.88 0.00 0.00 3.02
2694 2801 8.721019 AGACAAAAGATTTGCATTTTCAAGAA 57.279 26.923 2.88 0.00 0.00 2.52
2695 2802 9.165035 AGACAAAAGATTTGCATTTTCAAGAAA 57.835 25.926 2.88 0.00 0.00 2.52
2696 2803 9.429600 GACAAAAGATTTGCATTTTCAAGAAAG 57.570 29.630 2.88 0.00 0.00 2.62
2697 2804 8.949177 ACAAAAGATTTGCATTTTCAAGAAAGT 58.051 25.926 2.88 0.00 0.00 2.66
2700 2807 9.822185 AAAGATTTGCATTTTCAAGAAAGTAGT 57.178 25.926 0.00 0.00 0.00 2.73
2701 2808 9.468532 AAGATTTGCATTTTCAAGAAAGTAGTC 57.531 29.630 0.00 0.00 0.00 2.59
2702 2809 8.084684 AGATTTGCATTTTCAAGAAAGTAGTCC 58.915 33.333 0.00 0.00 0.00 3.85
2703 2810 6.707440 TTGCATTTTCAAGAAAGTAGTCCA 57.293 33.333 0.00 0.00 0.00 4.02
2704 2811 6.707440 TGCATTTTCAAGAAAGTAGTCCAA 57.293 33.333 0.00 0.00 0.00 3.53
2705 2812 6.738114 TGCATTTTCAAGAAAGTAGTCCAAG 58.262 36.000 0.00 0.00 0.00 3.61
2706 2813 6.152379 GCATTTTCAAGAAAGTAGTCCAAGG 58.848 40.000 0.00 0.00 0.00 3.61
2721 2828 1.406477 CCAAGGAAAGGGCGGTACTAC 60.406 57.143 0.00 0.00 0.00 2.73
2798 2905 2.750141 ACCTTCTAGCCGTCCAGATA 57.250 50.000 0.00 0.00 0.00 1.98
2839 2946 1.971357 TCCTCCGCATCTTCTTATCCC 59.029 52.381 0.00 0.00 0.00 3.85
2868 2975 1.954528 CAACCAGGCACAGCTTGAG 59.045 57.895 2.46 0.00 37.87 3.02
2884 2991 1.880340 GAGGAGCGATGACAAGCGG 60.880 63.158 0.00 0.00 35.22 5.52
2958 3065 2.665185 GCCTCACTGTCGCCGTTT 60.665 61.111 0.00 0.00 0.00 3.60
3009 3116 2.592574 CATGGCCATGGACGCGAT 60.593 61.111 34.31 0.00 35.24 4.58
3182 3291 5.013079 TCTCTGATTCGCCCATATAACCATT 59.987 40.000 0.00 0.00 0.00 3.16
3184 3293 4.078537 TGATTCGCCCATATAACCATTGG 58.921 43.478 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 9.725019 TCCTACGGTAGATAAAACGATAGATAA 57.275 33.333 16.59 0.00 41.38 1.75
3 4 9.376075 CTCCTACGGTAGATAAAACGATAGATA 57.624 37.037 16.59 0.00 41.38 1.98
4 5 7.336427 CCTCCTACGGTAGATAAAACGATAGAT 59.664 40.741 16.59 0.00 41.38 1.98
5 6 6.652481 CCTCCTACGGTAGATAAAACGATAGA 59.348 42.308 16.59 0.29 41.38 1.98
6 7 6.652481 TCCTCCTACGGTAGATAAAACGATAG 59.348 42.308 16.59 0.00 46.19 2.08
7 8 6.533730 TCCTCCTACGGTAGATAAAACGATA 58.466 40.000 16.59 0.00 0.00 2.92
8 9 5.380043 TCCTCCTACGGTAGATAAAACGAT 58.620 41.667 16.59 0.00 0.00 3.73
9 10 4.780815 TCCTCCTACGGTAGATAAAACGA 58.219 43.478 16.59 2.77 0.00 3.85
12 13 5.134725 ACCTCCTCCTACGGTAGATAAAA 57.865 43.478 16.59 0.00 0.00 1.52
13 14 4.803329 ACCTCCTCCTACGGTAGATAAA 57.197 45.455 16.59 0.00 0.00 1.40
15 16 3.461085 ACAACCTCCTCCTACGGTAGATA 59.539 47.826 16.59 3.69 0.00 1.98
16 17 2.244252 ACAACCTCCTCCTACGGTAGAT 59.756 50.000 16.59 0.00 0.00 1.98
17 18 1.637553 ACAACCTCCTCCTACGGTAGA 59.362 52.381 16.59 2.45 0.00 2.59
18 19 1.749634 CACAACCTCCTCCTACGGTAG 59.250 57.143 8.22 8.22 0.00 3.18
19 20 1.355381 TCACAACCTCCTCCTACGGTA 59.645 52.381 0.00 0.00 0.00 4.02
20 21 0.113776 TCACAACCTCCTCCTACGGT 59.886 55.000 0.00 0.00 0.00 4.83
21 22 1.067071 GTTCACAACCTCCTCCTACGG 60.067 57.143 0.00 0.00 0.00 4.02
22 23 1.893801 AGTTCACAACCTCCTCCTACG 59.106 52.381 0.00 0.00 0.00 3.51
23 24 4.957327 AGATAGTTCACAACCTCCTCCTAC 59.043 45.833 0.00 0.00 0.00 3.18
24 25 5.208294 AGATAGTTCACAACCTCCTCCTA 57.792 43.478 0.00 0.00 0.00 2.94
25 26 4.067944 AGATAGTTCACAACCTCCTCCT 57.932 45.455 0.00 0.00 0.00 3.69
26 27 5.740513 GCATAGATAGTTCACAACCTCCTCC 60.741 48.000 0.00 0.00 0.00 4.30
27 28 5.163405 TGCATAGATAGTTCACAACCTCCTC 60.163 44.000 0.00 0.00 0.00 3.71
28 29 4.716784 TGCATAGATAGTTCACAACCTCCT 59.283 41.667 0.00 0.00 0.00 3.69
29 30 4.811557 GTGCATAGATAGTTCACAACCTCC 59.188 45.833 0.00 0.00 0.00 4.30
30 31 5.665459 AGTGCATAGATAGTTCACAACCTC 58.335 41.667 0.00 0.00 0.00 3.85
31 32 5.683876 AGTGCATAGATAGTTCACAACCT 57.316 39.130 0.00 0.00 0.00 3.50
32 33 7.437748 AGATAGTGCATAGATAGTTCACAACC 58.562 38.462 0.00 0.00 0.00 3.77
35 36 9.301897 ACATAGATAGTGCATAGATAGTTCACA 57.698 33.333 0.00 0.00 0.00 3.58
40 41 9.839817 ACGATACATAGATAGTGCATAGATAGT 57.160 33.333 0.00 0.00 0.00 2.12
100 101 0.605860 TCGGCTCCGACTCTATAGGC 60.606 60.000 6.95 0.00 44.01 3.93
101 102 3.627645 TCGGCTCCGACTCTATAGG 57.372 57.895 6.95 0.00 44.01 2.57
111 112 0.030235 TCGATACACATTCGGCTCCG 59.970 55.000 1.14 1.14 37.22 4.63
112 113 1.067212 ACTCGATACACATTCGGCTCC 59.933 52.381 0.00 0.00 37.22 4.70
113 114 2.223502 TGACTCGATACACATTCGGCTC 60.224 50.000 0.00 0.00 37.22 4.70
114 115 1.749063 TGACTCGATACACATTCGGCT 59.251 47.619 0.00 0.00 37.22 5.52
115 116 2.203800 TGACTCGATACACATTCGGC 57.796 50.000 0.00 0.00 37.22 5.54
116 117 5.109662 ACTATGACTCGATACACATTCGG 57.890 43.478 0.00 0.00 37.22 4.30
117 118 7.118422 TCTACTATGACTCGATACACATTCG 57.882 40.000 0.00 0.00 37.94 3.34
118 119 9.388346 CTTTCTACTATGACTCGATACACATTC 57.612 37.037 0.00 0.00 0.00 2.67
119 120 8.353684 CCTTTCTACTATGACTCGATACACATT 58.646 37.037 0.00 0.00 0.00 2.71
120 121 7.720074 TCCTTTCTACTATGACTCGATACACAT 59.280 37.037 0.00 0.00 0.00 3.21
121 122 7.052248 TCCTTTCTACTATGACTCGATACACA 58.948 38.462 0.00 0.00 0.00 3.72
122 123 7.441760 TCTCCTTTCTACTATGACTCGATACAC 59.558 40.741 0.00 0.00 0.00 2.90
123 124 7.506971 TCTCCTTTCTACTATGACTCGATACA 58.493 38.462 0.00 0.00 0.00 2.29
124 125 7.966246 TCTCCTTTCTACTATGACTCGATAC 57.034 40.000 0.00 0.00 0.00 2.24
125 126 7.991460 TGTTCTCCTTTCTACTATGACTCGATA 59.009 37.037 0.00 0.00 0.00 2.92
126 127 6.829298 TGTTCTCCTTTCTACTATGACTCGAT 59.171 38.462 0.00 0.00 0.00 3.59
127 128 6.178324 TGTTCTCCTTTCTACTATGACTCGA 58.822 40.000 0.00 0.00 0.00 4.04
128 129 6.438259 TGTTCTCCTTTCTACTATGACTCG 57.562 41.667 0.00 0.00 0.00 4.18
134 135 9.915629 CGCTATATTTGTTCTCCTTTCTACTAT 57.084 33.333 0.00 0.00 0.00 2.12
135 136 7.866393 GCGCTATATTTGTTCTCCTTTCTACTA 59.134 37.037 0.00 0.00 0.00 1.82
136 137 6.702282 GCGCTATATTTGTTCTCCTTTCTACT 59.298 38.462 0.00 0.00 0.00 2.57
137 138 6.345882 CGCGCTATATTTGTTCTCCTTTCTAC 60.346 42.308 5.56 0.00 0.00 2.59
138 139 5.690409 CGCGCTATATTTGTTCTCCTTTCTA 59.310 40.000 5.56 0.00 0.00 2.10
139 140 4.508124 CGCGCTATATTTGTTCTCCTTTCT 59.492 41.667 5.56 0.00 0.00 2.52
140 141 4.270325 ACGCGCTATATTTGTTCTCCTTTC 59.730 41.667 5.73 0.00 0.00 2.62
141 142 4.189231 ACGCGCTATATTTGTTCTCCTTT 58.811 39.130 5.73 0.00 0.00 3.11
142 143 3.793559 ACGCGCTATATTTGTTCTCCTT 58.206 40.909 5.73 0.00 0.00 3.36
143 144 3.454371 ACGCGCTATATTTGTTCTCCT 57.546 42.857 5.73 0.00 0.00 3.69
144 145 3.361724 CGAACGCGCTATATTTGTTCTCC 60.362 47.826 5.73 0.00 37.40 3.71
145 146 3.773442 CGAACGCGCTATATTTGTTCTC 58.227 45.455 5.73 0.00 37.40 2.87
146 147 3.836229 CGAACGCGCTATATTTGTTCT 57.164 42.857 5.73 0.00 37.40 3.01
179 180 1.323136 CTGCAAAATATAGCGCGCGC 61.323 55.000 45.10 45.10 42.33 6.86
180 181 1.323136 GCTGCAAAATATAGCGCGCG 61.323 55.000 28.44 28.44 0.00 6.86
181 182 2.413924 GCTGCAAAATATAGCGCGC 58.586 52.632 26.66 26.66 0.00 6.86
185 186 1.660333 GCGACCGCTGCAAAATATAGC 60.660 52.381 7.19 0.00 38.26 2.97
186 187 2.300623 GCGACCGCTGCAAAATATAG 57.699 50.000 7.19 0.00 38.26 1.31
216 217 3.477224 TTTTTGTGCGCCGTGGAGC 62.477 57.895 4.18 7.75 41.27 4.70
217 218 1.657181 GTTTTTGTGCGCCGTGGAG 60.657 57.895 4.18 0.00 0.00 3.86
218 219 2.054140 GAGTTTTTGTGCGCCGTGGA 62.054 55.000 4.18 0.00 0.00 4.02
219 220 1.657181 GAGTTTTTGTGCGCCGTGG 60.657 57.895 4.18 0.00 0.00 4.94
220 221 0.317770 ATGAGTTTTTGTGCGCCGTG 60.318 50.000 4.18 0.00 0.00 4.94
221 222 0.317770 CATGAGTTTTTGTGCGCCGT 60.318 50.000 4.18 0.00 0.00 5.68
222 223 1.003262 CCATGAGTTTTTGTGCGCCG 61.003 55.000 4.18 0.00 0.00 6.46
223 224 0.031994 ACCATGAGTTTTTGTGCGCC 59.968 50.000 4.18 0.00 0.00 6.53
224 225 1.786579 GAACCATGAGTTTTTGTGCGC 59.213 47.619 0.00 0.00 39.40 6.09
225 226 2.223688 TGGAACCATGAGTTTTTGTGCG 60.224 45.455 0.00 0.00 39.40 5.34
226 227 3.451141 TGGAACCATGAGTTTTTGTGC 57.549 42.857 0.00 0.00 39.40 4.57
227 228 3.796178 CGTTGGAACCATGAGTTTTTGTG 59.204 43.478 0.00 0.00 39.40 3.33
228 229 3.697045 TCGTTGGAACCATGAGTTTTTGT 59.303 39.130 0.00 0.00 39.40 2.83
229 230 4.300189 TCGTTGGAACCATGAGTTTTTG 57.700 40.909 0.00 0.00 39.40 2.44
230 231 4.340950 ACATCGTTGGAACCATGAGTTTTT 59.659 37.500 4.39 0.00 39.40 1.94
231 232 3.888930 ACATCGTTGGAACCATGAGTTTT 59.111 39.130 4.39 0.00 39.40 2.43
232 233 3.486383 ACATCGTTGGAACCATGAGTTT 58.514 40.909 4.39 0.00 39.40 2.66
233 234 3.140325 ACATCGTTGGAACCATGAGTT 57.860 42.857 4.39 0.00 43.07 3.01
234 235 2.859165 ACATCGTTGGAACCATGAGT 57.141 45.000 4.39 0.00 32.75 3.41
235 236 4.435518 CGTTTACATCGTTGGAACCATGAG 60.436 45.833 4.39 0.00 32.75 2.90
236 237 3.433957 CGTTTACATCGTTGGAACCATGA 59.566 43.478 4.39 0.00 32.75 3.07
237 238 3.187637 ACGTTTACATCGTTGGAACCATG 59.812 43.478 0.00 0.00 38.38 3.66
238 239 3.404899 ACGTTTACATCGTTGGAACCAT 58.595 40.909 0.00 0.00 38.38 3.55
239 240 2.836262 ACGTTTACATCGTTGGAACCA 58.164 42.857 0.00 0.00 38.38 3.67
240 241 5.535043 AATACGTTTACATCGTTGGAACC 57.465 39.130 0.00 0.00 41.72 3.62
241 242 7.840981 AAAAATACGTTTACATCGTTGGAAC 57.159 32.000 0.00 2.38 41.72 3.62
242 243 7.745594 GCTAAAAATACGTTTACATCGTTGGAA 59.254 33.333 0.00 0.00 41.72 3.53
243 244 7.235777 GCTAAAAATACGTTTACATCGTTGGA 58.764 34.615 0.00 0.00 41.72 3.53
244 245 6.191413 CGCTAAAAATACGTTTACATCGTTGG 59.809 38.462 0.00 0.00 41.72 3.77
245 246 6.289668 GCGCTAAAAATACGTTTACATCGTTG 60.290 38.462 0.00 0.00 41.72 4.10
246 247 5.729424 GCGCTAAAAATACGTTTACATCGTT 59.271 36.000 0.00 0.00 41.72 3.85
247 248 5.250332 GCGCTAAAAATACGTTTACATCGT 58.750 37.500 0.00 0.00 43.86 3.73
248 249 4.367966 CGCGCTAAAAATACGTTTACATCG 59.632 41.667 5.56 0.00 0.00 3.84
249 250 4.141861 GCGCGCTAAAAATACGTTTACATC 59.858 41.667 26.67 0.00 0.00 3.06
250 251 4.023783 GCGCGCTAAAAATACGTTTACAT 58.976 39.130 26.67 0.00 0.00 2.29
251 252 3.406355 GCGCGCTAAAAATACGTTTACA 58.594 40.909 26.67 0.00 0.00 2.41
252 253 2.772467 GGCGCGCTAAAAATACGTTTAC 59.228 45.455 32.29 3.82 0.00 2.01
253 254 2.414481 TGGCGCGCTAAAAATACGTTTA 59.586 40.909 32.29 0.00 0.00 2.01
254 255 1.197264 TGGCGCGCTAAAAATACGTTT 59.803 42.857 32.29 0.00 0.00 3.60
255 256 0.797542 TGGCGCGCTAAAAATACGTT 59.202 45.000 32.29 0.00 0.00 3.99
256 257 0.095762 GTGGCGCGCTAAAAATACGT 59.904 50.000 32.29 0.00 0.00 3.57
257 258 0.917648 CGTGGCGCGCTAAAAATACG 60.918 55.000 32.29 19.45 0.00 3.06
258 259 0.095762 ACGTGGCGCGCTAAAAATAC 59.904 50.000 32.29 12.15 46.11 1.89
259 260 0.095589 CACGTGGCGCGCTAAAAATA 59.904 50.000 32.29 5.94 46.11 1.40
260 261 1.154301 CACGTGGCGCGCTAAAAAT 60.154 52.632 32.29 8.18 46.11 1.82
261 262 2.049475 AACACGTGGCGCGCTAAAAA 62.049 50.000 32.29 8.97 46.11 1.94
262 263 2.535788 AACACGTGGCGCGCTAAAA 61.536 52.632 32.29 11.71 46.11 1.52
263 264 2.968156 AACACGTGGCGCGCTAAA 60.968 55.556 32.29 14.50 46.11 1.85
264 265 3.707700 CAACACGTGGCGCGCTAA 61.708 61.111 32.29 17.34 46.11 3.09
278 279 4.430423 CTTCGACAGGCGCGCAAC 62.430 66.667 34.42 17.03 40.61 4.17
279 280 3.932580 ATCTTCGACAGGCGCGCAA 62.933 57.895 34.42 16.34 40.61 4.85
280 281 4.435436 ATCTTCGACAGGCGCGCA 62.435 61.111 34.42 8.19 40.61 6.09
281 282 3.918220 CATCTTCGACAGGCGCGC 61.918 66.667 25.94 25.94 40.61 6.86
282 283 3.918220 GCATCTTCGACAGGCGCG 61.918 66.667 0.00 0.00 40.61 6.86
283 284 2.510238 AGCATCTTCGACAGGCGC 60.510 61.111 0.00 0.00 40.61 6.53
284 285 3.698382 GAGCATCTTCGACAGGCG 58.302 61.111 0.00 0.00 42.69 5.52
295 296 3.401182 CAGCTTCTCCCATAAGAGCATC 58.599 50.000 0.00 0.00 33.66 3.91
296 297 2.106166 CCAGCTTCTCCCATAAGAGCAT 59.894 50.000 0.00 0.00 33.66 3.79
297 298 1.487976 CCAGCTTCTCCCATAAGAGCA 59.512 52.381 0.00 0.00 33.66 4.26
298 299 1.202746 CCCAGCTTCTCCCATAAGAGC 60.203 57.143 0.00 0.00 33.66 4.09
299 300 2.368221 CTCCCAGCTTCTCCCATAAGAG 59.632 54.545 0.00 0.00 35.04 2.85
300 301 2.402564 CTCCCAGCTTCTCCCATAAGA 58.597 52.381 0.00 0.00 0.00 2.10
301 302 1.419387 CCTCCCAGCTTCTCCCATAAG 59.581 57.143 0.00 0.00 0.00 1.73
302 303 1.009552 TCCTCCCAGCTTCTCCCATAA 59.990 52.381 0.00 0.00 0.00 1.90
303 304 0.642156 TCCTCCCAGCTTCTCCCATA 59.358 55.000 0.00 0.00 0.00 2.74
304 305 0.693767 CTCCTCCCAGCTTCTCCCAT 60.694 60.000 0.00 0.00 0.00 4.00
305 306 1.306482 CTCCTCCCAGCTTCTCCCA 60.306 63.158 0.00 0.00 0.00 4.37
306 307 2.069430 CCTCCTCCCAGCTTCTCCC 61.069 68.421 0.00 0.00 0.00 4.30
307 308 1.306568 ACCTCCTCCCAGCTTCTCC 60.307 63.158 0.00 0.00 0.00 3.71
308 309 1.621672 CCACCTCCTCCCAGCTTCTC 61.622 65.000 0.00 0.00 0.00 2.87
309 310 1.614824 CCACCTCCTCCCAGCTTCT 60.615 63.158 0.00 0.00 0.00 2.85
310 311 2.993853 CCACCTCCTCCCAGCTTC 59.006 66.667 0.00 0.00 0.00 3.86
311 312 3.334054 GCCACCTCCTCCCAGCTT 61.334 66.667 0.00 0.00 0.00 3.74
312 313 2.477190 TAAGCCACCTCCTCCCAGCT 62.477 60.000 0.00 0.00 0.00 4.24
313 314 1.348775 ATAAGCCACCTCCTCCCAGC 61.349 60.000 0.00 0.00 0.00 4.85
314 315 1.216990 AATAAGCCACCTCCTCCCAG 58.783 55.000 0.00 0.00 0.00 4.45
315 316 1.681229 AAATAAGCCACCTCCTCCCA 58.319 50.000 0.00 0.00 0.00 4.37
316 317 2.828661 AAAATAAGCCACCTCCTCCC 57.171 50.000 0.00 0.00 0.00 4.30
341 342 5.530543 ACATTTTAAGGCCATTTTTGTGTGG 59.469 36.000 5.01 0.00 38.55 4.17
342 343 6.038050 ACACATTTTAAGGCCATTTTTGTGTG 59.962 34.615 21.78 19.74 42.36 3.82
343 344 6.118852 ACACATTTTAAGGCCATTTTTGTGT 58.881 32.000 18.71 18.71 40.02 3.72
344 345 6.616774 ACACATTTTAAGGCCATTTTTGTG 57.383 33.333 17.73 17.73 38.26 3.33
345 346 8.738645 TTAACACATTTTAAGGCCATTTTTGT 57.261 26.923 5.01 0.00 0.00 2.83
348 349 8.625651 GGTTTTAACACATTTTAAGGCCATTTT 58.374 29.630 5.01 0.00 0.00 1.82
349 350 7.229707 GGGTTTTAACACATTTTAAGGCCATTT 59.770 33.333 5.01 0.00 31.01 2.32
350 351 6.712998 GGGTTTTAACACATTTTAAGGCCATT 59.287 34.615 5.01 0.00 31.01 3.16
351 352 6.183361 TGGGTTTTAACACATTTTAAGGCCAT 60.183 34.615 5.01 0.00 37.41 4.40
352 353 5.130477 TGGGTTTTAACACATTTTAAGGCCA 59.870 36.000 5.01 0.00 37.41 5.36
353 354 5.612351 TGGGTTTTAACACATTTTAAGGCC 58.388 37.500 0.00 0.00 37.41 5.19
379 380 7.309073 CGGAGGAAGTACTCTGGTATTTATACC 60.309 44.444 11.25 11.25 42.07 2.73
380 381 7.230309 ACGGAGGAAGTACTCTGGTATTTATAC 59.770 40.741 4.38 0.00 45.98 1.47
381 382 7.293073 ACGGAGGAAGTACTCTGGTATTTATA 58.707 38.462 4.38 0.00 45.98 0.98
382 383 6.134754 ACGGAGGAAGTACTCTGGTATTTAT 58.865 40.000 4.38 0.00 45.98 1.40
383 384 5.513233 ACGGAGGAAGTACTCTGGTATTTA 58.487 41.667 4.38 0.00 45.98 1.40
384 385 4.351127 ACGGAGGAAGTACTCTGGTATTT 58.649 43.478 4.38 0.00 45.98 1.40
385 386 3.952967 GACGGAGGAAGTACTCTGGTATT 59.047 47.826 4.38 0.00 45.98 1.89
386 387 3.202595 AGACGGAGGAAGTACTCTGGTAT 59.797 47.826 4.38 0.00 45.98 2.73
387 388 2.575279 AGACGGAGGAAGTACTCTGGTA 59.425 50.000 4.38 0.00 45.98 3.25
388 389 1.355043 AGACGGAGGAAGTACTCTGGT 59.645 52.381 4.38 0.00 45.98 4.00
389 390 2.018515 GAGACGGAGGAAGTACTCTGG 58.981 57.143 4.38 0.00 45.98 3.86
390 391 2.712709 TGAGACGGAGGAAGTACTCTG 58.287 52.381 0.00 0.00 46.86 3.35
391 392 3.655615 ATGAGACGGAGGAAGTACTCT 57.344 47.619 0.00 0.00 37.63 3.24
392 393 7.690952 ATATTATGAGACGGAGGAAGTACTC 57.309 40.000 0.00 0.00 36.76 2.59
393 394 9.233649 CTTATATTATGAGACGGAGGAAGTACT 57.766 37.037 0.00 0.00 0.00 2.73
394 395 9.228949 TCTTATATTATGAGACGGAGGAAGTAC 57.771 37.037 0.00 0.00 0.00 2.73
395 396 9.803507 TTCTTATATTATGAGACGGAGGAAGTA 57.196 33.333 0.00 0.00 0.00 2.24
396 397 8.578151 GTTCTTATATTATGAGACGGAGGAAGT 58.422 37.037 0.00 0.00 0.00 3.01
397 398 7.751348 CGTTCTTATATTATGAGACGGAGGAAG 59.249 40.741 0.00 0.00 0.00 3.46
398 399 7.230108 ACGTTCTTATATTATGAGACGGAGGAA 59.770 37.037 16.71 0.00 0.00 3.36
399 400 6.713903 ACGTTCTTATATTATGAGACGGAGGA 59.286 38.462 16.71 0.00 0.00 3.71
400 401 6.910995 ACGTTCTTATATTATGAGACGGAGG 58.089 40.000 16.71 6.29 0.00 4.30
401 402 8.798748 AAACGTTCTTATATTATGAGACGGAG 57.201 34.615 0.00 6.40 0.00 4.63
402 403 9.590451 AAAAACGTTCTTATATTATGAGACGGA 57.410 29.630 0.00 0.00 0.00 4.69
403 404 9.845305 GAAAAACGTTCTTATATTATGAGACGG 57.155 33.333 0.00 8.31 0.00 4.79
411 412 8.455682 CCCAGCTTGAAAAACGTTCTTATATTA 58.544 33.333 0.00 0.00 0.00 0.98
412 413 7.175990 TCCCAGCTTGAAAAACGTTCTTATATT 59.824 33.333 0.00 0.00 0.00 1.28
413 414 6.657541 TCCCAGCTTGAAAAACGTTCTTATAT 59.342 34.615 0.00 0.00 0.00 0.86
414 415 5.998981 TCCCAGCTTGAAAAACGTTCTTATA 59.001 36.000 0.00 0.00 0.00 0.98
415 416 4.825085 TCCCAGCTTGAAAAACGTTCTTAT 59.175 37.500 0.00 0.00 0.00 1.73
416 417 4.035909 GTCCCAGCTTGAAAAACGTTCTTA 59.964 41.667 0.00 0.00 0.00 2.10
417 418 3.020984 TCCCAGCTTGAAAAACGTTCTT 58.979 40.909 0.00 0.00 0.00 2.52
418 419 2.357952 GTCCCAGCTTGAAAAACGTTCT 59.642 45.455 0.00 0.00 0.00 3.01
419 420 2.727777 GTCCCAGCTTGAAAAACGTTC 58.272 47.619 0.00 0.00 0.00 3.95
420 421 1.064952 CGTCCCAGCTTGAAAAACGTT 59.935 47.619 0.00 0.00 0.00 3.99
421 422 0.661020 CGTCCCAGCTTGAAAAACGT 59.339 50.000 0.00 0.00 0.00 3.99
422 423 0.040425 CCGTCCCAGCTTGAAAAACG 60.040 55.000 0.00 0.00 0.00 3.60
423 424 1.266989 CTCCGTCCCAGCTTGAAAAAC 59.733 52.381 0.00 0.00 0.00 2.43
424 425 1.604604 CTCCGTCCCAGCTTGAAAAA 58.395 50.000 0.00 0.00 0.00 1.94
425 426 0.250727 CCTCCGTCCCAGCTTGAAAA 60.251 55.000 0.00 0.00 0.00 2.29
426 427 1.374947 CCTCCGTCCCAGCTTGAAA 59.625 57.895 0.00 0.00 0.00 2.69
427 428 2.592993 CCCTCCGTCCCAGCTTGAA 61.593 63.158 0.00 0.00 0.00 2.69
428 429 3.003173 CCCTCCGTCCCAGCTTGA 61.003 66.667 0.00 0.00 0.00 3.02
429 430 3.003173 TCCCTCCGTCCCAGCTTG 61.003 66.667 0.00 0.00 0.00 4.01
430 431 2.164332 TACTCCCTCCGTCCCAGCTT 62.164 60.000 0.00 0.00 0.00 3.74
431 432 1.950748 ATACTCCCTCCGTCCCAGCT 61.951 60.000 0.00 0.00 0.00 4.24
432 433 1.049289 AATACTCCCTCCGTCCCAGC 61.049 60.000 0.00 0.00 0.00 4.85
433 434 1.497161 AAATACTCCCTCCGTCCCAG 58.503 55.000 0.00 0.00 0.00 4.45
434 435 1.961133 AAAATACTCCCTCCGTCCCA 58.039 50.000 0.00 0.00 0.00 4.37
435 436 4.701651 AATAAAATACTCCCTCCGTCCC 57.298 45.455 0.00 0.00 0.00 4.46
436 437 6.117488 TCAAAATAAAATACTCCCTCCGTCC 58.883 40.000 0.00 0.00 0.00 4.79
437 438 6.238402 GCTCAAAATAAAATACTCCCTCCGTC 60.238 42.308 0.00 0.00 0.00 4.79
438 439 5.589050 GCTCAAAATAAAATACTCCCTCCGT 59.411 40.000 0.00 0.00 0.00 4.69
439 440 5.588648 TGCTCAAAATAAAATACTCCCTCCG 59.411 40.000 0.00 0.00 0.00 4.63
440 441 7.404671 TTGCTCAAAATAAAATACTCCCTCC 57.595 36.000 0.00 0.00 0.00 4.30
441 442 8.470002 ACATTGCTCAAAATAAAATACTCCCTC 58.530 33.333 0.00 0.00 0.00 4.30
442 443 8.366359 ACATTGCTCAAAATAAAATACTCCCT 57.634 30.769 0.00 0.00 0.00 4.20
454 455 8.458573 TCCGGTATTTATACATTGCTCAAAAT 57.541 30.769 0.00 0.00 34.98 1.82
457 458 6.588204 ACTCCGGTATTTATACATTGCTCAA 58.412 36.000 0.00 0.00 34.98 3.02
458 459 6.169557 ACTCCGGTATTTATACATTGCTCA 57.830 37.500 0.00 0.00 34.98 4.26
459 460 6.812160 CCTACTCCGGTATTTATACATTGCTC 59.188 42.308 0.00 0.00 34.98 4.26
492 493 2.213499 CCACCGAATTAGTCTGATGGC 58.787 52.381 0.00 0.00 0.00 4.40
499 500 2.358939 ACGTGACCACCGAATTAGTC 57.641 50.000 0.00 0.00 0.00 2.59
525 526 2.741486 TACTTGGGCCTGCAACCGAC 62.741 60.000 4.53 0.00 0.00 4.79
643 646 1.935933 ATAAACACCGATCCGCTGAC 58.064 50.000 0.00 0.00 0.00 3.51
732 735 5.544176 ACTGGAACTTTCTCTGGTAGATGAA 59.456 40.000 0.00 0.00 33.05 2.57
756 771 4.236935 GTCCACGTATAGTTTCGGAACAA 58.763 43.478 9.76 0.00 38.26 2.83
784 806 5.184479 TGCAGTTTATACGTACTCTTCAGGT 59.816 40.000 0.00 0.00 0.00 4.00
811 833 2.079925 CCTACTGGAGCTTGCTGAAAC 58.920 52.381 0.00 0.00 34.57 2.78
990 1035 2.589492 GCGAGCCATTGTCCGATCG 61.589 63.158 8.51 8.51 0.00 3.69
1516 1585 0.042731 TAGAAGTACTGCAGCCCCCT 59.957 55.000 15.27 7.50 0.00 4.79
1548 1617 1.723542 CGCGAGCTTGTTGTTGCTG 60.724 57.895 0.00 0.00 39.91 4.41
1707 1776 2.604686 AGCTGGCCGGAGAACTGA 60.605 61.111 18.31 0.00 0.00 3.41
2064 2142 1.272769 GTGAAGTAGTTGCCGGAGAGT 59.727 52.381 5.05 0.00 0.00 3.24
2364 2454 3.307906 TACGTGGAGCTGCCGGTT 61.308 61.111 17.43 3.61 40.66 4.44
2365 2455 4.065281 GTACGTGGAGCTGCCGGT 62.065 66.667 17.43 11.20 40.66 5.28
2387 2481 4.564821 CCCCTTTTAGCTAGCAACAGTGTA 60.565 45.833 18.83 0.00 0.00 2.90
2388 2482 3.412386 CCCTTTTAGCTAGCAACAGTGT 58.588 45.455 18.83 0.00 0.00 3.55
2389 2483 2.749621 CCCCTTTTAGCTAGCAACAGTG 59.250 50.000 18.83 3.46 0.00 3.66
2390 2484 2.642807 TCCCCTTTTAGCTAGCAACAGT 59.357 45.455 18.83 0.00 0.00 3.55
2391 2485 3.350219 TCCCCTTTTAGCTAGCAACAG 57.650 47.619 18.83 11.02 0.00 3.16
2392 2486 3.799432 TTCCCCTTTTAGCTAGCAACA 57.201 42.857 18.83 0.00 0.00 3.33
2393 2487 4.618460 GCTTTTCCCCTTTTAGCTAGCAAC 60.618 45.833 18.83 0.00 0.00 4.17
2394 2488 3.509967 GCTTTTCCCCTTTTAGCTAGCAA 59.490 43.478 18.83 6.50 0.00 3.91
2395 2489 3.089284 GCTTTTCCCCTTTTAGCTAGCA 58.911 45.455 18.83 0.00 0.00 3.49
2396 2490 3.089284 TGCTTTTCCCCTTTTAGCTAGC 58.911 45.455 6.62 6.62 33.15 3.42
2397 2491 3.127030 CGTGCTTTTCCCCTTTTAGCTAG 59.873 47.826 0.00 0.00 33.15 3.42
2398 2492 3.078837 CGTGCTTTTCCCCTTTTAGCTA 58.921 45.455 0.00 0.00 33.15 3.32
2399 2493 1.886542 CGTGCTTTTCCCCTTTTAGCT 59.113 47.619 0.00 0.00 33.15 3.32
2400 2494 1.067846 CCGTGCTTTTCCCCTTTTAGC 60.068 52.381 0.00 0.00 0.00 3.09
2401 2495 1.067846 GCCGTGCTTTTCCCCTTTTAG 60.068 52.381 0.00 0.00 0.00 1.85
2402 2496 0.963225 GCCGTGCTTTTCCCCTTTTA 59.037 50.000 0.00 0.00 0.00 1.52
2405 2499 2.983592 CGCCGTGCTTTTCCCCTT 60.984 61.111 0.00 0.00 0.00 3.95
2410 2504 3.631049 GAGACGCGCCGTGCTTTTC 62.631 63.158 5.73 0.00 41.37 2.29
2411 2505 3.712881 GAGACGCGCCGTGCTTTT 61.713 61.111 5.73 0.00 41.37 2.27
2469 2568 1.885049 ATATGGACACAGACCAGCCT 58.115 50.000 0.00 0.00 40.89 4.58
2479 2578 5.046529 TGCAAACAACAACAATATGGACAC 58.953 37.500 0.00 0.00 0.00 3.67
2485 2584 6.038050 CCCAAAAGTGCAAACAACAACAATAT 59.962 34.615 0.00 0.00 0.00 1.28
2486 2585 5.352569 CCCAAAAGTGCAAACAACAACAATA 59.647 36.000 0.00 0.00 0.00 1.90
2501 2601 3.031013 AGAAAGGGAACACCCAAAAGTG 58.969 45.455 8.05 0.00 45.73 3.16
2508 2608 1.354368 TGGATGAGAAAGGGAACACCC 59.646 52.381 0.00 0.00 43.78 4.61
2509 2609 2.040412 AGTGGATGAGAAAGGGAACACC 59.960 50.000 0.00 0.00 40.67 4.16
2549 2650 2.438254 CGGGCATGCAAGCACCTA 60.438 61.111 21.36 0.00 33.27 3.08
2584 2689 1.752498 AGTCACTTGTGACCACGTACA 59.248 47.619 24.78 0.00 39.50 2.90
2659 2766 8.994429 TGCAAATCTTTTGTCTTAGTTTCAAA 57.006 26.923 2.32 0.00 0.00 2.69
2660 2767 9.598517 AATGCAAATCTTTTGTCTTAGTTTCAA 57.401 25.926 0.00 0.00 0.00 2.69
2661 2768 9.598517 AAATGCAAATCTTTTGTCTTAGTTTCA 57.401 25.926 0.00 0.00 0.00 2.69
2664 2771 9.598517 TGAAAATGCAAATCTTTTGTCTTAGTT 57.401 25.926 0.63 0.00 0.00 2.24
2665 2772 9.598517 TTGAAAATGCAAATCTTTTGTCTTAGT 57.401 25.926 0.63 0.00 0.00 2.24
2667 2774 9.814899 TCTTGAAAATGCAAATCTTTTGTCTTA 57.185 25.926 0.63 0.00 0.00 2.10
2682 2789 6.016276 TCCTTGGACTACTTTCTTGAAAATGC 60.016 38.462 0.00 0.00 0.00 3.56
2683 2790 7.510549 TCCTTGGACTACTTTCTTGAAAATG 57.489 36.000 0.00 0.00 0.00 2.32
2684 2791 8.533569 TTTCCTTGGACTACTTTCTTGAAAAT 57.466 30.769 0.00 0.00 0.00 1.82
2685 2792 7.068226 CCTTTCCTTGGACTACTTTCTTGAAAA 59.932 37.037 0.00 0.00 0.00 2.29
2686 2793 6.546034 CCTTTCCTTGGACTACTTTCTTGAAA 59.454 38.462 0.00 0.00 0.00 2.69
2689 2796 4.762251 CCCTTTCCTTGGACTACTTTCTTG 59.238 45.833 0.00 0.00 0.00 3.02
2690 2797 4.750096 GCCCTTTCCTTGGACTACTTTCTT 60.750 45.833 0.00 0.00 0.00 2.52
2691 2798 3.244946 GCCCTTTCCTTGGACTACTTTCT 60.245 47.826 0.00 0.00 0.00 2.52
2692 2799 3.082548 GCCCTTTCCTTGGACTACTTTC 58.917 50.000 0.00 0.00 0.00 2.62
2693 2800 2.552373 CGCCCTTTCCTTGGACTACTTT 60.552 50.000 0.00 0.00 0.00 2.66
2694 2801 1.003233 CGCCCTTTCCTTGGACTACTT 59.997 52.381 0.00 0.00 0.00 2.24
2695 2802 0.613777 CGCCCTTTCCTTGGACTACT 59.386 55.000 0.00 0.00 0.00 2.57
2696 2803 0.392595 CCGCCCTTTCCTTGGACTAC 60.393 60.000 0.00 0.00 0.00 2.73
2697 2804 0.838987 ACCGCCCTTTCCTTGGACTA 60.839 55.000 0.00 0.00 0.00 2.59
2698 2805 0.838987 TACCGCCCTTTCCTTGGACT 60.839 55.000 0.00 0.00 0.00 3.85
2699 2806 0.675837 GTACCGCCCTTTCCTTGGAC 60.676 60.000 0.00 0.00 0.00 4.02
2700 2807 0.838987 AGTACCGCCCTTTCCTTGGA 60.839 55.000 0.00 0.00 0.00 3.53
2701 2808 0.906775 TAGTACCGCCCTTTCCTTGG 59.093 55.000 0.00 0.00 0.00 3.61
2702 2809 1.738030 CGTAGTACCGCCCTTTCCTTG 60.738 57.143 0.00 0.00 0.00 3.61
2703 2810 0.533951 CGTAGTACCGCCCTTTCCTT 59.466 55.000 0.00 0.00 0.00 3.36
2704 2811 2.196319 CGTAGTACCGCCCTTTCCT 58.804 57.895 0.00 0.00 0.00 3.36
2705 2812 4.821177 CGTAGTACCGCCCTTTCC 57.179 61.111 0.00 0.00 0.00 3.13
2868 2975 3.567797 GCCGCTTGTCATCGCTCC 61.568 66.667 0.00 0.00 0.00 4.70
2958 3065 4.802051 GGCCATGGCGAGGAAGCA 62.802 66.667 29.90 0.00 43.06 3.91
3160 3269 4.908601 ATGGTTATATGGGCGAATCAGA 57.091 40.909 0.00 0.00 0.00 3.27
3182 3291 2.690497 TCCGACATTTGTTTTTGCTCCA 59.310 40.909 0.00 0.00 0.00 3.86
3184 3293 4.298332 ACATCCGACATTTGTTTTTGCTC 58.702 39.130 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.