Multiple sequence alignment - TraesCS2B01G378100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G378100 chr2B 100.000 5874 0 0 1 5874 541005277 541011150 0.000000e+00 10848.0
1 TraesCS2B01G378100 chr2B 83.092 207 26 5 1 201 247928059 247928262 4.680000e-41 180.0
2 TraesCS2B01G378100 chr2B 83.616 177 26 3 4098 4273 361423586 361423412 4.710000e-36 163.0
3 TraesCS2B01G378100 chr2B 80.676 207 34 4 1 201 697672536 697672330 7.880000e-34 156.0
4 TraesCS2B01G378100 chr2B 91.818 110 7 1 255 362 459135215 459135324 1.020000e-32 152.0
5 TraesCS2B01G378100 chr2D 93.725 4908 161 55 460 5297 459771946 459776776 0.000000e+00 7221.0
6 TraesCS2B01G378100 chr2D 92.233 515 23 9 5368 5874 459795357 459795862 0.000000e+00 713.0
7 TraesCS2B01G378100 chr2D 82.126 207 31 4 1 201 328796328 328796534 7.830000e-39 172.0
8 TraesCS2B01G378100 chr2D 92.000 125 4 4 358 477 459771875 459771998 2.810000e-38 171.0
9 TraesCS2B01G378100 chr2D 83.908 174 25 3 4098 4270 311718136 311718307 4.710000e-36 163.0
10 TraesCS2B01G378100 chr2D 98.182 55 1 0 5297 5351 459776801 459776855 4.850000e-16 97.1
11 TraesCS2B01G378100 chr4D 84.058 207 26 7 1 201 434065394 434065599 6.010000e-45 193.0
12 TraesCS2B01G378100 chr5A 83.333 210 27 4 1 203 653929416 653929208 2.790000e-43 187.0
13 TraesCS2B01G378100 chr5A 92.593 54 2 2 2029 2082 577931206 577931155 6.310000e-10 76.8
14 TraesCS2B01G378100 chr7D 84.021 194 25 3 1 188 460516376 460516183 1.300000e-41 182.0
15 TraesCS2B01G378100 chr7D 81.905 210 32 3 1 204 136596728 136596519 7.830000e-39 172.0
16 TraesCS2B01G378100 chr4A 82.474 194 28 5 1 188 136760710 136760903 1.310000e-36 165.0
17 TraesCS2B01G378100 chr4A 100.000 44 0 0 2029 2072 680371617 680371660 1.360000e-11 82.4
18 TraesCS2B01G378100 chr7A 81.250 208 31 4 1 201 612974337 612974543 1.690000e-35 161.0
19 TraesCS2B01G378100 chr7A 91.228 114 8 1 255 366 634960663 634960776 2.830000e-33 154.0
20 TraesCS2B01G378100 chr2A 83.815 173 25 3 4099 4270 428910973 428911143 1.690000e-35 161.0
21 TraesCS2B01G378100 chr2A 100.000 44 0 0 2031 2074 680546395 680546352 1.360000e-11 82.4
22 TraesCS2B01G378100 chr6B 91.818 110 7 1 255 362 544446396 544446505 1.020000e-32 152.0
23 TraesCS2B01G378100 chr3B 89.655 116 9 2 255 368 548352246 548352132 1.710000e-30 145.0
24 TraesCS2B01G378100 chr3B 89.655 116 9 2 255 368 726688494 726688608 1.710000e-30 145.0
25 TraesCS2B01G378100 chr3B 90.090 111 9 1 254 362 205976201 205976311 6.140000e-30 143.0
26 TraesCS2B01G378100 chr3B 90.000 110 9 1 255 362 366626799 366626908 2.210000e-29 141.0
27 TraesCS2B01G378100 chr3B 88.333 120 11 2 255 372 588293913 588293795 2.210000e-29 141.0
28 TraesCS2B01G378100 chr3B 87.143 70 7 2 2029 2097 134308686 134308618 1.760000e-10 78.7
29 TraesCS2B01G378100 chr1D 89.655 116 9 2 255 368 418906245 418906359 1.710000e-30 145.0
30 TraesCS2B01G378100 chr1B 89.655 116 9 2 255 368 54442480 54442594 1.710000e-30 145.0
31 TraesCS2B01G378100 chr1B 88.983 118 11 1 244 359 186465024 186464907 1.710000e-30 145.0
32 TraesCS2B01G378100 chr1B 89.655 116 9 2 255 368 402906061 402905947 1.710000e-30 145.0
33 TraesCS2B01G378100 chr4B 88.889 117 10 2 255 369 455211084 455211199 2.210000e-29 141.0
34 TraesCS2B01G378100 chr4B 92.593 54 3 1 2030 2082 633620865 633620812 6.310000e-10 76.8
35 TraesCS2B01G378100 chr6D 94.444 54 1 2 2029 2082 86643302 86643251 1.360000e-11 82.4
36 TraesCS2B01G378100 chr3D 100.000 43 0 0 2029 2071 458619957 458619999 4.880000e-11 80.5
37 TraesCS2B01G378100 chr3A 94.340 53 0 2 2031 2080 560400043 560399991 1.760000e-10 78.7
38 TraesCS2B01G378100 chr5D 92.593 54 2 2 2029 2082 458870342 458870291 6.310000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G378100 chr2B 541005277 541011150 5873 False 10848.000000 10848 100.000000 1 5874 1 chr2B.!!$F3 5873
1 TraesCS2B01G378100 chr2D 459771875 459776855 4980 False 2496.366667 7221 94.635667 358 5351 3 chr2D.!!$F4 4993
2 TraesCS2B01G378100 chr2D 459795357 459795862 505 False 713.000000 713 92.233000 5368 5874 1 chr2D.!!$F3 506

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
455 456 0.030638 GTCTCAGCTTTGCCGCAAAA 59.969 50.000 18.78 4.10 32.75 2.44 F
484 485 0.036858 AGTCTCAGCTTTTCCCTCGC 60.037 55.000 0.00 0.00 0.00 5.03 F
1356 1367 0.189574 TTGGGCAATGAGGGGTTTGA 59.810 50.000 0.00 0.00 0.00 2.69 F
1481 1492 1.153939 CAGCTCCTTCTCCGACGTG 60.154 63.158 0.00 0.00 0.00 4.49 F
2041 2052 1.282157 GTTGCCCATTACTCCCTCTGT 59.718 52.381 0.00 0.00 0.00 3.41 F
2622 2640 1.289066 GCGGTATGAGGCGCATCTA 59.711 57.895 23.78 10.05 38.44 1.98 F
2817 2854 1.303561 TGTGTCAATGCTGGCCTCC 60.304 57.895 3.32 0.00 0.00 4.30 F
3944 3995 0.108585 TTGAATATCCCCAGCGCCTC 59.891 55.000 2.29 0.00 0.00 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1945 1956 0.250513 GAAGCCAGGAAGATCCACGT 59.749 55.000 0.00 0.00 39.61 4.49 R
1957 1968 0.901124 AGGTCACTAGCAGAAGCCAG 59.099 55.000 0.00 0.00 43.56 4.85 R
2810 2847 0.029163 TCATATTCCAGGGGAGGCCA 60.029 55.000 5.01 0.00 31.21 5.36 R
2976 3013 0.170339 GCCTACGCAAATGTTCACCC 59.830 55.000 0.00 0.00 34.03 4.61 R
3459 3498 0.237498 GGCTACCAGTTTTCACGCAC 59.763 55.000 0.00 0.00 0.00 5.34 R
3691 3732 0.795085 GAAGCACAGCACAGCTACTG 59.205 55.000 8.59 8.59 40.90 2.74 R
4576 4635 1.153429 GTAAACTGCGGCCCTCGAT 60.153 57.895 0.00 0.00 42.43 3.59 R
5211 5280 0.096454 CACGACTGCACGAGACGATA 59.904 55.000 3.48 0.00 41.66 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 8.458573 TTTCAATTTACTTACCAAGCTTCTCA 57.541 30.769 0.00 0.00 0.00 3.27
73 74 8.635765 TTCAATTTACTTACCAAGCTTCTCAT 57.364 30.769 0.00 0.00 0.00 2.90
74 75 8.635765 TCAATTTACTTACCAAGCTTCTCATT 57.364 30.769 0.00 0.00 0.00 2.57
75 76 9.733556 TCAATTTACTTACCAAGCTTCTCATTA 57.266 29.630 0.00 0.00 0.00 1.90
80 81 7.817418 ACTTACCAAGCTTCTCATTAAAACA 57.183 32.000 0.00 0.00 0.00 2.83
81 82 8.409358 ACTTACCAAGCTTCTCATTAAAACAT 57.591 30.769 0.00 0.00 0.00 2.71
82 83 9.515226 ACTTACCAAGCTTCTCATTAAAACATA 57.485 29.630 0.00 0.00 0.00 2.29
85 86 7.830739 ACCAAGCTTCTCATTAAAACATAAGG 58.169 34.615 0.00 0.00 0.00 2.69
86 87 7.451566 ACCAAGCTTCTCATTAAAACATAAGGT 59.548 33.333 0.00 0.00 0.00 3.50
87 88 8.956426 CCAAGCTTCTCATTAAAACATAAGGTA 58.044 33.333 0.00 0.00 0.00 3.08
97 98 9.260002 CATTAAAACATAAGGTAAATCATGGGC 57.740 33.333 0.00 0.00 0.00 5.36
98 99 6.865834 AAAACATAAGGTAAATCATGGGCA 57.134 33.333 0.00 0.00 0.00 5.36
99 100 6.469782 AAACATAAGGTAAATCATGGGCAG 57.530 37.500 0.00 0.00 0.00 4.85
100 101 4.473444 ACATAAGGTAAATCATGGGCAGG 58.527 43.478 0.00 0.00 0.00 4.85
101 102 4.167892 ACATAAGGTAAATCATGGGCAGGA 59.832 41.667 0.00 0.00 0.00 3.86
102 103 3.756082 AAGGTAAATCATGGGCAGGAA 57.244 42.857 0.00 0.00 0.00 3.36
103 104 3.018423 AGGTAAATCATGGGCAGGAAC 57.982 47.619 0.00 0.00 0.00 3.62
104 105 2.582636 AGGTAAATCATGGGCAGGAACT 59.417 45.455 0.00 0.00 43.88 3.01
141 142 7.718272 TTTACACACTCGTATTAATATGGGC 57.282 36.000 13.54 0.00 0.00 5.36
142 143 5.284861 ACACACTCGTATTAATATGGGCA 57.715 39.130 13.54 0.00 0.00 5.36
143 144 5.297547 ACACACTCGTATTAATATGGGCAG 58.702 41.667 13.54 9.51 0.00 4.85
144 145 4.690748 CACACTCGTATTAATATGGGCAGG 59.309 45.833 13.54 7.08 0.00 4.85
145 146 4.347000 ACACTCGTATTAATATGGGCAGGT 59.653 41.667 13.54 7.62 0.00 4.00
146 147 5.541101 ACACTCGTATTAATATGGGCAGGTA 59.459 40.000 13.54 0.00 0.00 3.08
147 148 6.042322 ACACTCGTATTAATATGGGCAGGTAA 59.958 38.462 13.54 0.00 0.00 2.85
148 149 6.932400 CACTCGTATTAATATGGGCAGGTAAA 59.068 38.462 13.54 0.00 0.00 2.01
149 150 7.117812 CACTCGTATTAATATGGGCAGGTAAAG 59.882 40.741 13.54 4.22 0.00 1.85
150 151 7.015877 ACTCGTATTAATATGGGCAGGTAAAGA 59.984 37.037 13.54 0.00 0.00 2.52
151 152 7.913789 TCGTATTAATATGGGCAGGTAAAGAT 58.086 34.615 13.53 0.00 0.00 2.40
152 153 9.038072 TCGTATTAATATGGGCAGGTAAAGATA 57.962 33.333 13.53 0.00 0.00 1.98
153 154 9.661563 CGTATTAATATGGGCAGGTAAAGATAA 57.338 33.333 6.78 0.00 0.00 1.75
162 163 8.270137 TGGGCAGGTAAAGATAACATATTAGA 57.730 34.615 0.00 0.00 0.00 2.10
163 164 8.719596 TGGGCAGGTAAAGATAACATATTAGAA 58.280 33.333 0.00 0.00 0.00 2.10
164 165 9.740710 GGGCAGGTAAAGATAACATATTAGAAT 57.259 33.333 0.00 0.00 0.00 2.40
188 189 9.929722 AATATTTATAACATGCTACAACACACG 57.070 29.630 0.00 0.00 0.00 4.49
189 190 5.788055 TTATAACATGCTACAACACACGG 57.212 39.130 0.00 0.00 0.00 4.94
190 191 1.961793 AACATGCTACAACACACGGT 58.038 45.000 0.00 0.00 0.00 4.83
191 192 1.508632 ACATGCTACAACACACGGTC 58.491 50.000 0.00 0.00 0.00 4.79
192 193 1.202592 ACATGCTACAACACACGGTCA 60.203 47.619 0.00 0.00 0.00 4.02
193 194 2.076100 CATGCTACAACACACGGTCAT 58.924 47.619 0.00 0.00 0.00 3.06
194 195 2.248280 TGCTACAACACACGGTCATT 57.752 45.000 0.00 0.00 0.00 2.57
195 196 1.870402 TGCTACAACACACGGTCATTG 59.130 47.619 0.00 0.00 0.00 2.82
196 197 1.871039 GCTACAACACACGGTCATTGT 59.129 47.619 6.47 6.47 38.72 2.71
197 198 2.096417 GCTACAACACACGGTCATTGTC 60.096 50.000 4.87 0.00 36.67 3.18
198 199 1.305201 ACAACACACGGTCATTGTCC 58.695 50.000 0.00 0.00 29.30 4.02
199 200 1.134220 ACAACACACGGTCATTGTCCT 60.134 47.619 0.00 0.00 29.30 3.85
200 201 2.103432 ACAACACACGGTCATTGTCCTA 59.897 45.455 0.00 0.00 29.30 2.94
201 202 3.135225 CAACACACGGTCATTGTCCTAA 58.865 45.455 0.00 0.00 0.00 2.69
202 203 3.695830 ACACACGGTCATTGTCCTAAT 57.304 42.857 0.00 0.00 0.00 1.73
203 204 4.811969 ACACACGGTCATTGTCCTAATA 57.188 40.909 0.00 0.00 0.00 0.98
204 205 4.755411 ACACACGGTCATTGTCCTAATAG 58.245 43.478 0.00 0.00 0.00 1.73
205 206 4.222145 ACACACGGTCATTGTCCTAATAGT 59.778 41.667 0.00 0.00 0.00 2.12
206 207 5.419788 ACACACGGTCATTGTCCTAATAGTA 59.580 40.000 0.00 0.00 0.00 1.82
207 208 6.071221 ACACACGGTCATTGTCCTAATAGTAA 60.071 38.462 0.00 0.00 0.00 2.24
208 209 6.475727 CACACGGTCATTGTCCTAATAGTAAG 59.524 42.308 0.00 0.00 0.00 2.34
209 210 6.379133 ACACGGTCATTGTCCTAATAGTAAGA 59.621 38.462 0.00 0.00 0.00 2.10
210 211 7.069578 ACACGGTCATTGTCCTAATAGTAAGAT 59.930 37.037 0.00 0.00 0.00 2.40
211 212 7.926555 CACGGTCATTGTCCTAATAGTAAGATT 59.073 37.037 0.00 0.00 0.00 2.40
212 213 8.142551 ACGGTCATTGTCCTAATAGTAAGATTC 58.857 37.037 0.00 0.00 0.00 2.52
213 214 8.361139 CGGTCATTGTCCTAATAGTAAGATTCT 58.639 37.037 0.00 0.00 0.00 2.40
214 215 9.482627 GGTCATTGTCCTAATAGTAAGATTCTG 57.517 37.037 0.00 0.00 0.00 3.02
231 232 8.882415 AAGATTCTGTAAGTTTACTTCAACGA 57.118 30.769 0.00 0.00 37.40 3.85
232 233 9.490379 AAGATTCTGTAAGTTTACTTCAACGAT 57.510 29.630 0.00 0.00 37.40 3.73
259 260 7.706100 TTATTGGTTAATTTGTACCACTCCC 57.294 36.000 6.34 0.00 43.80 4.30
260 261 5.327737 TTGGTTAATTTGTACCACTCCCT 57.672 39.130 6.34 0.00 43.80 4.20
261 262 4.913784 TGGTTAATTTGTACCACTCCCTC 58.086 43.478 0.00 0.00 39.44 4.30
262 263 4.263594 TGGTTAATTTGTACCACTCCCTCC 60.264 45.833 0.00 0.00 39.44 4.30
263 264 2.781681 AATTTGTACCACTCCCTCCG 57.218 50.000 0.00 0.00 0.00 4.63
264 265 1.652947 ATTTGTACCACTCCCTCCGT 58.347 50.000 0.00 0.00 0.00 4.69
265 266 1.426751 TTTGTACCACTCCCTCCGTT 58.573 50.000 0.00 0.00 0.00 4.44
266 267 0.971386 TTGTACCACTCCCTCCGTTC 59.029 55.000 0.00 0.00 0.00 3.95
267 268 0.178955 TGTACCACTCCCTCCGTTCA 60.179 55.000 0.00 0.00 0.00 3.18
268 269 0.245813 GTACCACTCCCTCCGTTCAC 59.754 60.000 0.00 0.00 0.00 3.18
269 270 0.113776 TACCACTCCCTCCGTTCACT 59.886 55.000 0.00 0.00 0.00 3.41
270 271 0.763223 ACCACTCCCTCCGTTCACTT 60.763 55.000 0.00 0.00 0.00 3.16
271 272 0.396811 CCACTCCCTCCGTTCACTTT 59.603 55.000 0.00 0.00 0.00 2.66
272 273 1.202770 CCACTCCCTCCGTTCACTTTT 60.203 52.381 0.00 0.00 0.00 2.27
273 274 1.873591 CACTCCCTCCGTTCACTTTTG 59.126 52.381 0.00 0.00 0.00 2.44
274 275 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.00 0.00 2.83
275 276 2.701951 ACTCCCTCCGTTCACTTTTGTA 59.298 45.455 0.00 0.00 0.00 2.41
276 277 3.135167 ACTCCCTCCGTTCACTTTTGTAA 59.865 43.478 0.00 0.00 0.00 2.41
277 278 3.735591 TCCCTCCGTTCACTTTTGTAAG 58.264 45.455 0.00 0.00 37.40 2.34
278 279 3.135167 TCCCTCCGTTCACTTTTGTAAGT 59.865 43.478 0.00 0.00 45.40 2.24
279 280 3.497262 CCCTCCGTTCACTTTTGTAAGTC 59.503 47.826 0.00 0.00 42.67 3.01
280 281 3.183775 CCTCCGTTCACTTTTGTAAGTCG 59.816 47.826 0.00 0.00 42.67 4.18
281 282 3.784338 TCCGTTCACTTTTGTAAGTCGT 58.216 40.909 0.00 0.00 42.67 4.34
282 283 4.183101 TCCGTTCACTTTTGTAAGTCGTT 58.817 39.130 0.00 0.00 42.67 3.85
283 284 4.630940 TCCGTTCACTTTTGTAAGTCGTTT 59.369 37.500 0.00 0.00 42.67 3.60
284 285 4.959757 CCGTTCACTTTTGTAAGTCGTTTC 59.040 41.667 0.00 0.00 42.67 2.78
285 286 5.446206 CCGTTCACTTTTGTAAGTCGTTTCA 60.446 40.000 0.00 0.00 42.67 2.69
286 287 5.671140 CGTTCACTTTTGTAAGTCGTTTCAG 59.329 40.000 0.00 0.00 42.67 3.02
287 288 6.454583 CGTTCACTTTTGTAAGTCGTTTCAGA 60.455 38.462 0.00 0.00 42.67 3.27
288 289 6.340537 TCACTTTTGTAAGTCGTTTCAGAC 57.659 37.500 0.00 0.00 42.67 3.51
289 290 5.870433 TCACTTTTGTAAGTCGTTTCAGACA 59.130 36.000 0.00 0.00 42.67 3.41
290 291 6.369340 TCACTTTTGTAAGTCGTTTCAGACAA 59.631 34.615 0.00 0.00 42.67 3.18
291 292 6.464834 CACTTTTGTAAGTCGTTTCAGACAAC 59.535 38.462 0.00 0.00 42.67 3.32
292 293 6.370718 ACTTTTGTAAGTCGTTTCAGACAACT 59.629 34.615 0.00 0.00 40.60 3.16
293 294 5.712217 TTGTAAGTCGTTTCAGACAACTG 57.288 39.130 0.00 0.00 43.24 3.16
306 307 5.179045 CAGACAACTGAAAATGAACTGCT 57.821 39.130 0.00 0.00 46.03 4.24
307 308 5.585390 CAGACAACTGAAAATGAACTGCTT 58.415 37.500 0.00 0.00 46.03 3.91
308 309 6.038356 CAGACAACTGAAAATGAACTGCTTT 58.962 36.000 0.00 0.00 46.03 3.51
309 310 6.020121 CAGACAACTGAAAATGAACTGCTTTG 60.020 38.462 0.00 0.00 46.03 2.77
310 311 4.567959 ACAACTGAAAATGAACTGCTTTGC 59.432 37.500 0.00 0.00 0.00 3.68
311 312 4.389890 ACTGAAAATGAACTGCTTTGCA 57.610 36.364 0.00 0.00 36.92 4.08
312 313 4.114794 ACTGAAAATGAACTGCTTTGCAC 58.885 39.130 0.00 0.00 33.79 4.57
313 314 4.142093 ACTGAAAATGAACTGCTTTGCACT 60.142 37.500 0.00 0.00 33.79 4.40
314 315 4.114073 TGAAAATGAACTGCTTTGCACTG 58.886 39.130 0.00 0.00 33.79 3.66
315 316 4.142204 TGAAAATGAACTGCTTTGCACTGA 60.142 37.500 0.00 0.00 33.79 3.41
316 317 3.360249 AATGAACTGCTTTGCACTGAC 57.640 42.857 0.00 0.00 33.79 3.51
317 318 2.042686 TGAACTGCTTTGCACTGACT 57.957 45.000 0.00 0.00 33.79 3.41
318 319 1.672363 TGAACTGCTTTGCACTGACTG 59.328 47.619 0.00 0.00 33.79 3.51
319 320 1.942657 GAACTGCTTTGCACTGACTGA 59.057 47.619 0.00 0.00 33.79 3.41
320 321 2.042686 ACTGCTTTGCACTGACTGAA 57.957 45.000 0.00 0.00 33.79 3.02
321 322 2.368439 ACTGCTTTGCACTGACTGAAA 58.632 42.857 0.00 0.00 33.79 2.69
322 323 2.954318 ACTGCTTTGCACTGACTGAAAT 59.046 40.909 0.00 0.00 33.79 2.17
323 324 3.243301 ACTGCTTTGCACTGACTGAAATG 60.243 43.478 0.00 0.00 33.79 2.32
324 325 2.689471 TGCTTTGCACTGACTGAAATGT 59.311 40.909 0.00 0.00 31.71 2.71
325 326 3.243168 TGCTTTGCACTGACTGAAATGTC 60.243 43.478 0.00 0.00 33.88 3.06
326 327 3.004106 GCTTTGCACTGACTGAAATGTCT 59.996 43.478 0.00 0.00 37.79 3.41
327 328 4.498682 GCTTTGCACTGACTGAAATGTCTT 60.499 41.667 0.00 0.00 37.79 3.01
328 329 5.581126 TTTGCACTGACTGAAATGTCTTT 57.419 34.783 0.00 0.00 37.79 2.52
329 330 4.556942 TGCACTGACTGAAATGTCTTTG 57.443 40.909 0.00 0.00 37.79 2.77
330 331 4.198530 TGCACTGACTGAAATGTCTTTGA 58.801 39.130 0.00 0.00 37.79 2.69
331 332 4.639755 TGCACTGACTGAAATGTCTTTGAA 59.360 37.500 0.00 0.00 37.79 2.69
332 333 5.210715 GCACTGACTGAAATGTCTTTGAAG 58.789 41.667 0.00 0.00 37.79 3.02
333 334 5.210715 CACTGACTGAAATGTCTTTGAAGC 58.789 41.667 0.00 0.00 37.79 3.86
334 335 4.276926 ACTGACTGAAATGTCTTTGAAGCC 59.723 41.667 0.00 0.00 37.79 4.35
335 336 4.464008 TGACTGAAATGTCTTTGAAGCCT 58.536 39.130 0.00 0.00 37.79 4.58
336 337 4.889409 TGACTGAAATGTCTTTGAAGCCTT 59.111 37.500 0.00 0.00 37.79 4.35
337 338 5.192327 ACTGAAATGTCTTTGAAGCCTTG 57.808 39.130 0.00 0.00 0.00 3.61
338 339 4.646492 ACTGAAATGTCTTTGAAGCCTTGT 59.354 37.500 0.00 0.00 0.00 3.16
339 340 5.827797 ACTGAAATGTCTTTGAAGCCTTGTA 59.172 36.000 0.00 0.00 0.00 2.41
340 341 6.321181 ACTGAAATGTCTTTGAAGCCTTGTAA 59.679 34.615 0.00 0.00 0.00 2.41
341 342 7.106439 TGAAATGTCTTTGAAGCCTTGTAAA 57.894 32.000 0.00 0.00 0.00 2.01
342 343 7.551585 TGAAATGTCTTTGAAGCCTTGTAAAA 58.448 30.769 0.00 0.00 0.00 1.52
343 344 7.706179 TGAAATGTCTTTGAAGCCTTGTAAAAG 59.294 33.333 0.00 0.00 0.00 2.27
344 345 6.715347 ATGTCTTTGAAGCCTTGTAAAAGT 57.285 33.333 0.00 0.00 0.00 2.66
345 346 5.890334 TGTCTTTGAAGCCTTGTAAAAGTG 58.110 37.500 0.00 0.00 0.00 3.16
346 347 5.650266 TGTCTTTGAAGCCTTGTAAAAGTGA 59.350 36.000 0.00 0.00 0.00 3.41
347 348 6.151985 TGTCTTTGAAGCCTTGTAAAAGTGAA 59.848 34.615 0.00 0.00 0.00 3.18
348 349 6.472486 GTCTTTGAAGCCTTGTAAAAGTGAAC 59.528 38.462 0.00 0.00 0.00 3.18
349 350 5.906113 TTGAAGCCTTGTAAAAGTGAACA 57.094 34.783 0.00 0.00 0.00 3.18
350 351 5.499139 TGAAGCCTTGTAAAAGTGAACAG 57.501 39.130 0.00 0.00 0.00 3.16
351 352 5.189928 TGAAGCCTTGTAAAAGTGAACAGA 58.810 37.500 0.00 0.00 0.00 3.41
352 353 5.296780 TGAAGCCTTGTAAAAGTGAACAGAG 59.703 40.000 0.00 0.00 0.00 3.35
353 354 4.137543 AGCCTTGTAAAAGTGAACAGAGG 58.862 43.478 0.00 0.00 32.08 3.69
354 355 3.253432 GCCTTGTAAAAGTGAACAGAGGG 59.747 47.826 0.00 0.00 30.80 4.30
355 356 4.714632 CCTTGTAAAAGTGAACAGAGGGA 58.285 43.478 0.00 0.00 0.00 4.20
356 357 4.757149 CCTTGTAAAAGTGAACAGAGGGAG 59.243 45.833 0.00 0.00 0.00 4.30
418 419 3.696051 TCTAGCATGCACTTTTGGGATTC 59.304 43.478 21.98 0.00 0.00 2.52
442 443 5.398603 AGAGTGGTCAACATAAGTCTCAG 57.601 43.478 0.00 0.00 0.00 3.35
447 448 4.756642 TGGTCAACATAAGTCTCAGCTTTG 59.243 41.667 0.00 0.00 0.00 2.77
450 451 2.350522 ACATAAGTCTCAGCTTTGCCG 58.649 47.619 0.00 0.00 0.00 5.69
451 452 1.063174 CATAAGTCTCAGCTTTGCCGC 59.937 52.381 0.00 0.00 0.00 6.53
452 453 0.034756 TAAGTCTCAGCTTTGCCGCA 59.965 50.000 0.00 0.00 0.00 5.69
454 455 0.819259 AGTCTCAGCTTTGCCGCAAA 60.819 50.000 17.39 17.39 0.00 3.68
455 456 0.030638 GTCTCAGCTTTGCCGCAAAA 59.969 50.000 18.78 4.10 32.75 2.44
456 457 0.743688 TCTCAGCTTTGCCGCAAAAA 59.256 45.000 18.78 5.16 32.75 1.94
480 481 5.966742 AAACATAAGTCTCAGCTTTTCCC 57.033 39.130 0.00 0.00 0.00 3.97
481 482 4.917906 ACATAAGTCTCAGCTTTTCCCT 57.082 40.909 0.00 0.00 0.00 4.20
482 483 4.837972 ACATAAGTCTCAGCTTTTCCCTC 58.162 43.478 0.00 0.00 0.00 4.30
483 484 2.464157 AAGTCTCAGCTTTTCCCTCG 57.536 50.000 0.00 0.00 0.00 4.63
484 485 0.036858 AGTCTCAGCTTTTCCCTCGC 60.037 55.000 0.00 0.00 0.00 5.03
485 486 0.320771 GTCTCAGCTTTTCCCTCGCA 60.321 55.000 0.00 0.00 0.00 5.10
489 490 1.608590 TCAGCTTTTCCCTCGCAAAAG 59.391 47.619 2.65 2.65 41.79 2.27
492 493 2.693074 AGCTTTTCCCTCGCAAAAGAAA 59.307 40.909 9.66 0.00 41.52 2.52
493 494 3.132111 AGCTTTTCCCTCGCAAAAGAAAA 59.868 39.130 9.66 6.11 41.52 2.29
537 538 2.476873 AATAGCTCGCTACTGACACG 57.523 50.000 0.00 0.00 0.00 4.49
552 553 7.094720 GCTACTGACACGATGGAGTAAGTATAT 60.095 40.741 3.55 0.00 0.00 0.86
553 554 9.433153 CTACTGACACGATGGAGTAAGTATATA 57.567 37.037 3.55 0.00 0.00 0.86
649 656 2.178474 ATCGATTTGCATGCACGTTC 57.822 45.000 22.58 15.86 0.00 3.95
759 770 1.202627 GCTAGCTTAGCCACTCATGCT 60.203 52.381 7.70 0.00 45.95 3.79
819 830 1.228184 GTCCGGCCGAGAGATAGGA 60.228 63.158 30.73 9.92 0.00 2.94
841 852 2.902457 TTTTCCCCGGCCTGTCCTC 61.902 63.158 0.00 0.00 0.00 3.71
885 896 2.197324 GCCACCTCCCACAAACCA 59.803 61.111 0.00 0.00 0.00 3.67
1023 1034 0.669318 CTTCGGCGAACAACTGGCTA 60.669 55.000 19.83 0.00 0.00 3.93
1108 1119 4.907034 CCGCCATCGACGTCTCCG 62.907 72.222 14.70 8.36 38.10 4.63
1109 1120 4.907034 CGCCATCGACGTCTCCGG 62.907 72.222 14.70 11.44 38.78 5.14
1110 1121 3.823330 GCCATCGACGTCTCCGGT 61.823 66.667 14.70 0.00 38.78 5.28
1111 1122 2.102357 CCATCGACGTCTCCGGTG 59.898 66.667 14.70 7.72 37.84 4.94
1112 1123 2.102357 CATCGACGTCTCCGGTGG 59.898 66.667 14.70 0.00 38.78 4.61
1113 1124 2.045634 ATCGACGTCTCCGGTGGA 60.046 61.111 14.70 1.51 38.78 4.02
1297 1308 1.330521 CAGCGCGCATGTATACCTTTT 59.669 47.619 35.10 3.94 0.00 2.27
1327 1338 2.557056 CTGATGTTGGATGGGATCATGC 59.443 50.000 0.00 0.00 41.36 4.06
1356 1367 0.189574 TTGGGCAATGAGGGGTTTGA 59.810 50.000 0.00 0.00 0.00 2.69
1465 1476 2.060980 AGGACTTCCTAGGCGGCAG 61.061 63.158 13.08 6.60 46.48 4.85
1481 1492 1.153939 CAGCTCCTTCTCCGACGTG 60.154 63.158 0.00 0.00 0.00 4.49
1769 1780 1.300465 CTCGATGAGCATGGGGTCG 60.300 63.158 0.00 0.00 44.47 4.79
1823 1834 2.262915 GTGGGGACAGAGAGCACG 59.737 66.667 0.00 0.00 44.46 5.34
1945 1956 4.322198 CCGAGGTGTAACAAGGTTAGCTAA 60.322 45.833 0.86 0.86 39.98 3.09
1957 1968 3.132467 AGGTTAGCTAACGTGGATCTTCC 59.868 47.826 26.45 11.66 37.07 3.46
2040 2051 1.743772 CGTTGCCCATTACTCCCTCTG 60.744 57.143 0.00 0.00 0.00 3.35
2041 2052 1.282157 GTTGCCCATTACTCCCTCTGT 59.718 52.381 0.00 0.00 0.00 3.41
2042 2053 2.504175 GTTGCCCATTACTCCCTCTGTA 59.496 50.000 0.00 0.00 0.00 2.74
2043 2054 2.840511 TGCCCATTACTCCCTCTGTAA 58.159 47.619 0.00 0.00 34.87 2.41
2045 2056 3.199946 TGCCCATTACTCCCTCTGTAAAG 59.800 47.826 0.00 0.00 34.20 1.85
2046 2057 3.454812 GCCCATTACTCCCTCTGTAAAGA 59.545 47.826 0.00 0.00 34.20 2.52
2047 2058 4.080526 GCCCATTACTCCCTCTGTAAAGAA 60.081 45.833 0.00 0.00 34.20 2.52
2049 2060 6.663734 CCCATTACTCCCTCTGTAAAGAAAT 58.336 40.000 0.00 0.00 34.20 2.17
2051 2062 8.440771 CCCATTACTCCCTCTGTAAAGAAATAT 58.559 37.037 0.00 0.00 34.20 1.28
2058 2069 9.632807 CTCCCTCTGTAAAGAAATATAAGATCG 57.367 37.037 0.00 0.00 0.00 3.69
2060 2071 9.765795 CCCTCTGTAAAGAAATATAAGATCGTT 57.234 33.333 0.00 0.00 0.00 3.85
2091 2108 6.874664 CACTAGTAGTTTCTTTCTTTCTCCCC 59.125 42.308 0.00 0.00 0.00 4.81
2110 2127 2.158900 CCCCTCGATTGCACACTAATCT 60.159 50.000 0.00 0.00 33.44 2.40
2148 2165 3.004106 CCATTTTTGAGGGATCGATCTGC 59.996 47.826 23.96 13.96 0.00 4.26
2155 2172 3.096092 GAGGGATCGATCTGCCTAGAAT 58.904 50.000 23.96 2.62 36.32 2.40
2183 2200 6.350629 ACGGTTAGAAGTAGCTAAGGAAAA 57.649 37.500 0.00 0.00 31.45 2.29
2224 2241 6.096423 TCCTGTGTACACTACAATTAGCTAGG 59.904 42.308 25.60 18.14 40.93 3.02
2225 2242 6.096423 CCTGTGTACACTACAATTAGCTAGGA 59.904 42.308 25.60 0.00 40.93 2.94
2230 2247 8.248945 TGTACACTACAATTAGCTAGGAACTTC 58.751 37.037 0.00 0.00 36.17 3.01
2231 2248 7.241042 ACACTACAATTAGCTAGGAACTTCA 57.759 36.000 0.00 0.00 41.75 3.02
2244 2261 7.338449 AGCTAGGAACTTCACAAAAACTTGTTA 59.662 33.333 0.00 0.00 41.75 2.41
2245 2262 7.971722 GCTAGGAACTTCACAAAAACTTGTTAA 59.028 33.333 0.00 0.00 41.75 2.01
2281 2298 7.992180 AAATTAGGAACAAAATCATGATCGC 57.008 32.000 9.06 0.00 0.00 4.58
2319 2336 7.701924 GCTAACAACATAATGCAATCAAAGCTA 59.298 33.333 0.00 0.00 0.00 3.32
2326 2343 9.956720 ACATAATGCAATCAAAGCTAACTAATC 57.043 29.630 0.00 0.00 0.00 1.75
2329 2346 7.870509 ATGCAATCAAAGCTAACTAATCTGA 57.129 32.000 0.00 0.00 0.00 3.27
2330 2347 7.870509 TGCAATCAAAGCTAACTAATCTGAT 57.129 32.000 0.00 0.00 0.00 2.90
2372 2389 4.339247 ACTTCACTTGTGCTATGCAACTTT 59.661 37.500 0.00 0.00 41.47 2.66
2394 2411 3.908103 TCCACTTCACTTAGCCTTTAGGT 59.092 43.478 0.00 0.00 37.57 3.08
2422 2439 8.840321 ACACAATGCTTGTAATATAAGGTGATC 58.160 33.333 9.49 0.00 43.23 2.92
2525 2543 3.306019 GGGTTGTTTGGCCAATAGAAGTG 60.306 47.826 21.26 0.00 0.00 3.16
2583 2601 5.001819 CGCGTTATTTGTTGTTAATTCGACC 59.998 40.000 0.00 0.00 0.00 4.79
2622 2640 1.289066 GCGGTATGAGGCGCATCTA 59.711 57.895 23.78 10.05 38.44 1.98
2652 2670 2.296365 TTGCAGGAGAGAGGGGCAG 61.296 63.158 0.00 0.00 35.68 4.85
2680 2698 4.099419 GCAAGGGGAAACAAGGTATAATGG 59.901 45.833 0.00 0.00 0.00 3.16
2683 2701 4.079385 AGGGGAAACAAGGTATAATGGGAC 60.079 45.833 0.00 0.00 0.00 4.46
2738 2775 9.709495 AGTTCAATCATTAGCTAGATCTCAATC 57.291 33.333 0.00 0.00 0.00 2.67
2757 2794 5.185635 TCAATCTTTTGGCAACTTCTATGGG 59.814 40.000 0.00 0.00 33.44 4.00
2768 2805 6.377146 GGCAACTTCTATGGGATGTTCTTAAA 59.623 38.462 0.00 0.00 39.34 1.52
2798 2835 9.780413 GTGATAATTAAGCTTTCTTCTTTCTGG 57.220 33.333 3.20 0.00 33.85 3.86
2810 2847 3.213206 TCTTTCTGGTGTGTCAATGCT 57.787 42.857 0.00 0.00 0.00 3.79
2812 2849 1.608055 TTCTGGTGTGTCAATGCTGG 58.392 50.000 0.00 0.00 0.00 4.85
2817 2854 1.303561 TGTGTCAATGCTGGCCTCC 60.304 57.895 3.32 0.00 0.00 4.30
2825 2862 3.424105 GCTGGCCTCCCCTGGAAT 61.424 66.667 3.32 0.00 33.42 3.01
2835 2872 2.105477 CTCCCCTGGAATATGACACTGG 59.895 54.545 0.00 0.00 0.00 4.00
2850 2887 5.430886 TGACACTGGAAATACTGATCATGG 58.569 41.667 0.00 0.00 0.00 3.66
2878 2915 7.156876 TGCAGTTTATCTGGGTAAGAATTTG 57.843 36.000 0.00 0.00 43.78 2.32
2879 2916 6.719370 TGCAGTTTATCTGGGTAAGAATTTGT 59.281 34.615 0.00 0.00 43.78 2.83
2882 2919 9.449719 CAGTTTATCTGGGTAAGAATTTGTACT 57.550 33.333 0.00 0.00 38.79 2.73
2903 2940 4.327357 ACTGATCTTTCGTGCAAGTATTCG 59.673 41.667 0.00 0.00 0.00 3.34
2909 2946 6.097356 TCTTTCGTGCAAGTATTCGATTACT 58.903 36.000 12.99 12.99 33.85 2.24
2916 2953 9.550811 CGTGCAAGTATTCGATTACTACATATA 57.449 33.333 17.76 2.90 32.16 0.86
2944 2981 2.012673 GGGCAAGTGTTCTGATGCTAG 58.987 52.381 0.82 0.00 38.79 3.42
2945 2982 1.399791 GGCAAGTGTTCTGATGCTAGC 59.600 52.381 8.10 8.10 38.79 3.42
2946 2983 2.354259 GCAAGTGTTCTGATGCTAGCT 58.646 47.619 17.23 0.83 35.93 3.32
2947 2984 3.525537 GCAAGTGTTCTGATGCTAGCTA 58.474 45.455 17.23 2.58 35.93 3.32
2948 2985 3.935203 GCAAGTGTTCTGATGCTAGCTAA 59.065 43.478 17.23 0.00 35.93 3.09
2949 2986 4.033817 GCAAGTGTTCTGATGCTAGCTAAG 59.966 45.833 17.23 10.58 35.93 2.18
2950 2987 5.174395 CAAGTGTTCTGATGCTAGCTAAGT 58.826 41.667 17.23 0.00 0.00 2.24
2954 2991 4.098654 TGTTCTGATGCTAGCTAAGTCCTC 59.901 45.833 17.23 2.33 0.00 3.71
2969 3006 6.702282 GCTAAGTCCTCGATAGCACTTTAATT 59.298 38.462 9.55 0.00 41.28 1.40
2973 3010 6.981559 AGTCCTCGATAGCACTTTAATTTCTC 59.018 38.462 0.00 0.00 0.00 2.87
2976 3013 6.201806 CCTCGATAGCACTTTAATTTCTCCTG 59.798 42.308 0.00 0.00 0.00 3.86
3013 3050 3.335579 AGGCGGTTATGACAAAGAAGAC 58.664 45.455 0.00 0.00 0.00 3.01
3270 3308 3.763897 GAGGTAACAATTGCTTGACCCAT 59.236 43.478 5.05 0.00 41.41 4.00
3271 3309 3.763897 AGGTAACAATTGCTTGACCCATC 59.236 43.478 5.05 0.00 41.41 3.51
3278 3316 1.367346 TGCTTGACCCATCCCAAGTA 58.633 50.000 0.00 0.00 41.21 2.24
3387 3426 6.066032 TGGATGCATATGATCATTCAACTGT 58.934 36.000 14.65 0.00 34.96 3.55
3417 3456 1.820056 TGGTTTTTCTCGTGGCGCA 60.820 52.632 10.83 0.00 0.00 6.09
3465 3504 8.278482 GGTAACTATACTATTTACAGTGCGTG 57.722 38.462 0.00 0.00 32.36 5.34
3665 3706 6.940298 TCAGCTAGCTAAACCACTTGTTTAAT 59.060 34.615 18.86 0.00 46.09 1.40
3680 3721 9.701098 CACTTGTTTAATTACTGTACTGGAGTA 57.299 33.333 4.66 0.00 0.00 2.59
3683 3724 9.918630 TTGTTTAATTACTGTACTGGAGTAGTC 57.081 33.333 4.66 0.00 40.89 2.59
3686 3727 9.979897 TTTAATTACTGTACTGGAGTAGTCCTA 57.020 33.333 17.62 0.00 44.30 2.94
3687 3728 9.624373 TTAATTACTGTACTGGAGTAGTCCTAG 57.376 37.037 17.62 14.42 44.30 3.02
3689 3730 7.739995 TTACTGTACTGGAGTAGTCCTAGTA 57.260 40.000 17.62 17.76 44.30 1.82
3690 3731 6.237887 ACTGTACTGGAGTAGTCCTAGTAG 57.762 45.833 20.38 16.35 44.30 2.57
3691 3732 5.033589 TGTACTGGAGTAGTCCTAGTAGC 57.966 47.826 20.38 16.72 44.30 3.58
3762 3809 3.512033 ACTACTCCAGCTCACGAAATC 57.488 47.619 0.00 0.00 0.00 2.17
3766 3813 2.094286 ACTCCAGCTCACGAAATCTCAG 60.094 50.000 0.00 0.00 0.00 3.35
3769 3816 3.129462 TCCAGCTCACGAAATCTCAGTAG 59.871 47.826 0.00 0.00 0.00 2.57
3936 3987 1.029681 GCACCGGTTTGAATATCCCC 58.970 55.000 2.97 0.00 0.00 4.81
3944 3995 0.108585 TTGAATATCCCCAGCGCCTC 59.891 55.000 2.29 0.00 0.00 4.70
4051 4106 1.650912 CGCAATATGCTCCACTGGC 59.349 57.895 0.43 0.00 42.25 4.85
4071 4126 1.691976 CTGGTCAGTTGGGTAGACACA 59.308 52.381 0.00 0.00 34.04 3.72
4168 4227 2.440247 GCCATCAAGTTCCGGGGG 60.440 66.667 0.00 0.00 0.00 5.40
4531 4590 1.145819 GCAGGACATCCAGGAGCTC 59.854 63.158 4.71 4.71 38.89 4.09
4576 4635 1.600636 CAACTTCTTCCAGCCGGCA 60.601 57.895 31.54 4.59 0.00 5.69
4798 4857 3.160748 GAGCTCTCCCAGGGCTCC 61.161 72.222 13.62 0.00 44.46 4.70
4804 4863 4.779733 TCCCAGGGCTCCTCGTCC 62.780 72.222 0.00 0.00 37.80 4.79
4843 4902 0.108329 CGGACGGCTACTCCAACAAT 60.108 55.000 0.00 0.00 34.01 2.71
4889 4948 2.420466 GATCGGCCCCCTACGTTC 59.580 66.667 0.00 0.00 0.00 3.95
4911 4970 3.181534 CGTGTTACTAATCAACTGCCACG 60.182 47.826 0.00 0.00 37.44 4.94
4931 4990 2.292237 GCTTGTTGTAACGTACGTTGC 58.708 47.619 36.87 35.06 40.33 4.17
4945 5004 3.408020 TTGCGCGCACGAGTAACC 61.408 61.111 36.72 0.00 43.93 2.85
4949 5008 2.879462 GCGCACGAGTAACCGGAG 60.879 66.667 9.46 0.00 0.00 4.63
5033 5092 2.945668 CTGAAAGGTAGTAATGGCCAGC 59.054 50.000 13.05 3.86 0.00 4.85
5074 5133 4.072131 ACTTTGTAAATCACCATCGCTGT 58.928 39.130 0.00 0.00 0.00 4.40
5157 5216 5.345702 CATGGCTACTTCATTCAATTGGTG 58.654 41.667 5.42 5.57 0.00 4.17
5158 5217 3.763360 TGGCTACTTCATTCAATTGGTGG 59.237 43.478 5.42 0.00 0.00 4.61
5165 5229 2.935849 TCATTCAATTGGTGGATCGTCG 59.064 45.455 5.42 0.00 0.00 5.12
5170 5234 0.895530 ATTGGTGGATCGTCGTCAGT 59.104 50.000 0.00 0.00 0.00 3.41
5175 5239 2.400399 GTGGATCGTCGTCAGTTTGAA 58.600 47.619 0.00 0.00 0.00 2.69
5192 5261 8.033038 TCAGTTTGAACACATGTAGGAGTATAC 58.967 37.037 0.00 0.00 0.00 1.47
5208 5277 8.651589 AGGAGTATACATATAGTAAGCTTGCA 57.348 34.615 17.21 3.40 36.05 4.08
5209 5278 9.090103 AGGAGTATACATATAGTAAGCTTGCAA 57.910 33.333 17.21 0.00 36.05 4.08
5210 5279 9.141400 GGAGTATACATATAGTAAGCTTGCAAC 57.859 37.037 17.21 3.41 36.05 4.17
5211 5280 9.915629 GAGTATACATATAGTAAGCTTGCAACT 57.084 33.333 17.21 11.15 36.05 3.16
5269 5339 1.895238 GGCCAAATGAGCAGTGCAT 59.105 52.632 19.20 0.00 0.00 3.96
5272 5342 1.202268 GCCAAATGAGCAGTGCATCTC 60.202 52.381 19.20 6.91 0.00 2.75
5326 5421 0.456142 CGATCGACTTGGAGAACGCA 60.456 55.000 10.26 0.00 0.00 5.24
5351 5446 1.610038 CACATGCATGCGGTTATGGAT 59.390 47.619 26.53 0.00 39.33 3.41
5352 5447 2.341318 CATGCATGCGGTTATGGATG 57.659 50.000 14.93 4.58 45.85 3.51
5353 5448 2.275134 ATGCATGCGGTTATGGATGA 57.725 45.000 14.09 0.00 39.78 2.92
5354 5449 1.308047 TGCATGCGGTTATGGATGAC 58.692 50.000 14.09 0.00 39.78 3.06
5355 5450 0.593128 GCATGCGGTTATGGATGACC 59.407 55.000 0.00 0.00 39.78 4.02
5359 5454 4.475527 GGTTATGGATGACCGGGC 57.524 61.111 6.32 1.57 39.42 6.13
5360 5455 1.837090 GGTTATGGATGACCGGGCT 59.163 57.895 9.82 0.00 39.42 5.19
5361 5456 0.182775 GGTTATGGATGACCGGGCTT 59.817 55.000 9.82 0.00 39.42 4.35
5362 5457 1.409661 GGTTATGGATGACCGGGCTTT 60.410 52.381 9.82 0.00 39.42 3.51
5363 5458 1.676006 GTTATGGATGACCGGGCTTTG 59.324 52.381 9.82 0.00 39.42 2.77
5364 5459 1.208706 TATGGATGACCGGGCTTTGA 58.791 50.000 9.82 0.00 39.42 2.69
5365 5460 0.394352 ATGGATGACCGGGCTTTGAC 60.394 55.000 9.82 0.00 39.42 3.18
5366 5461 1.299976 GGATGACCGGGCTTTGACT 59.700 57.895 9.82 0.00 0.00 3.41
5380 5475 3.617531 GCTTTGACTGCTTGAGGTAGCTA 60.618 47.826 0.00 0.00 41.76 3.32
5451 5551 6.983890 ACAAACAAAATACAGGGAACATGTTC 59.016 34.615 27.16 27.16 38.80 3.18
5536 5636 4.239304 GGTTTGGTCAAAACTTTGTTCGT 58.761 39.130 2.85 0.00 46.27 3.85
5563 5665 5.266733 TCTTCAACAAGAGCTTTGCAAAT 57.733 34.783 13.23 0.00 33.38 2.32
5573 5675 5.476614 AGAGCTTTGCAAATGAAGGATTTC 58.523 37.500 13.23 0.61 31.41 2.17
5590 5692 3.756082 TTTCCCATAAACAGAGGGCAT 57.244 42.857 0.00 0.00 42.52 4.40
5591 5693 2.734755 TCCCATAAACAGAGGGCATG 57.265 50.000 0.00 0.00 42.52 4.06
5592 5694 1.035139 CCCATAAACAGAGGGCATGC 58.965 55.000 9.90 9.90 35.44 4.06
5593 5695 1.685803 CCCATAAACAGAGGGCATGCA 60.686 52.381 21.36 0.00 35.44 3.96
5597 5699 2.512692 AAACAGAGGGCATGCATGTA 57.487 45.000 26.79 0.00 0.00 2.29
5607 5709 6.324512 AGAGGGCATGCATGTATTAAAAATGA 59.675 34.615 26.79 0.00 0.00 2.57
5611 5713 7.925483 GGGCATGCATGTATTAAAAATGAAGTA 59.075 33.333 26.79 0.00 0.00 2.24
5685 5787 3.682858 GCGCCACTACTATTTCAGTTCAA 59.317 43.478 0.00 0.00 38.80 2.69
5755 5857 1.602668 CCAAACCAACAATCGTGCAGG 60.603 52.381 0.00 0.00 0.00 4.85
5758 5860 0.036164 ACCAACAATCGTGCAGGCTA 59.964 50.000 0.35 0.00 0.00 3.93
5810 5913 5.284864 TGCTGCTAATAAGAGAGAACATCG 58.715 41.667 0.00 0.00 0.00 3.84
5815 5918 7.500992 TGCTAATAAGAGAGAACATCGGAAAT 58.499 34.615 0.00 0.00 0.00 2.17
5816 5919 8.638873 TGCTAATAAGAGAGAACATCGGAAATA 58.361 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 9.077885 TGAGAAGCTTGGTAAGTAAATTGAAAT 57.922 29.630 2.10 0.00 0.00 2.17
47 48 8.458573 TGAGAAGCTTGGTAAGTAAATTGAAA 57.541 30.769 2.10 0.00 0.00 2.69
48 49 8.635765 ATGAGAAGCTTGGTAAGTAAATTGAA 57.364 30.769 2.10 0.00 0.00 2.69
49 50 8.635765 AATGAGAAGCTTGGTAAGTAAATTGA 57.364 30.769 2.10 0.00 0.00 2.57
54 55 9.344772 TGTTTTAATGAGAAGCTTGGTAAGTAA 57.655 29.630 2.10 0.00 0.00 2.24
55 56 8.911918 TGTTTTAATGAGAAGCTTGGTAAGTA 57.088 30.769 2.10 0.00 0.00 2.24
56 57 7.817418 TGTTTTAATGAGAAGCTTGGTAAGT 57.183 32.000 2.10 0.00 0.00 2.24
59 60 8.956426 CCTTATGTTTTAATGAGAAGCTTGGTA 58.044 33.333 2.10 0.00 0.00 3.25
60 61 7.451566 ACCTTATGTTTTAATGAGAAGCTTGGT 59.548 33.333 2.10 0.00 0.00 3.67
61 62 7.830739 ACCTTATGTTTTAATGAGAAGCTTGG 58.169 34.615 2.10 0.00 0.00 3.61
71 72 9.260002 GCCCATGATTTACCTTATGTTTTAATG 57.740 33.333 0.00 0.00 0.00 1.90
72 73 8.986991 TGCCCATGATTTACCTTATGTTTTAAT 58.013 29.630 0.00 0.00 0.00 1.40
73 74 8.367660 TGCCCATGATTTACCTTATGTTTTAA 57.632 30.769 0.00 0.00 0.00 1.52
74 75 7.069331 CCTGCCCATGATTTACCTTATGTTTTA 59.931 37.037 0.00 0.00 0.00 1.52
75 76 6.127083 CCTGCCCATGATTTACCTTATGTTTT 60.127 38.462 0.00 0.00 0.00 2.43
76 77 5.363580 CCTGCCCATGATTTACCTTATGTTT 59.636 40.000 0.00 0.00 0.00 2.83
77 78 4.895297 CCTGCCCATGATTTACCTTATGTT 59.105 41.667 0.00 0.00 0.00 2.71
78 79 4.167892 TCCTGCCCATGATTTACCTTATGT 59.832 41.667 0.00 0.00 0.00 2.29
79 80 4.728772 TCCTGCCCATGATTTACCTTATG 58.271 43.478 0.00 0.00 0.00 1.90
80 81 5.103515 AGTTCCTGCCCATGATTTACCTTAT 60.104 40.000 0.00 0.00 0.00 1.73
81 82 4.229582 AGTTCCTGCCCATGATTTACCTTA 59.770 41.667 0.00 0.00 0.00 2.69
82 83 3.011708 AGTTCCTGCCCATGATTTACCTT 59.988 43.478 0.00 0.00 0.00 3.50
83 84 2.582636 AGTTCCTGCCCATGATTTACCT 59.417 45.455 0.00 0.00 0.00 3.08
84 85 2.689983 CAGTTCCTGCCCATGATTTACC 59.310 50.000 0.00 0.00 0.00 2.85
85 86 3.620488 TCAGTTCCTGCCCATGATTTAC 58.380 45.455 0.00 0.00 0.00 2.01
86 87 4.524802 ATCAGTTCCTGCCCATGATTTA 57.475 40.909 0.00 0.00 0.00 1.40
87 88 2.905415 TCAGTTCCTGCCCATGATTT 57.095 45.000 0.00 0.00 0.00 2.17
88 89 4.524802 TTATCAGTTCCTGCCCATGATT 57.475 40.909 0.00 0.00 32.99 2.57
89 90 4.210331 GTTTATCAGTTCCTGCCCATGAT 58.790 43.478 0.00 0.00 35.01 2.45
90 91 3.010027 TGTTTATCAGTTCCTGCCCATGA 59.990 43.478 0.00 0.00 0.00 3.07
91 92 3.355378 TGTTTATCAGTTCCTGCCCATG 58.645 45.455 0.00 0.00 0.00 3.66
92 93 3.737559 TGTTTATCAGTTCCTGCCCAT 57.262 42.857 0.00 0.00 0.00 4.00
93 94 3.737559 ATGTTTATCAGTTCCTGCCCA 57.262 42.857 0.00 0.00 0.00 5.36
94 95 6.715347 ATAAATGTTTATCAGTTCCTGCCC 57.285 37.500 0.00 0.00 35.86 5.36
95 96 9.516314 GTAAATAAATGTTTATCAGTTCCTGCC 57.484 33.333 0.00 0.00 35.86 4.85
115 116 9.426837 GCCCATATTAATACGAGTGTGTAAATA 57.573 33.333 0.00 0.00 0.00 1.40
116 117 7.934665 TGCCCATATTAATACGAGTGTGTAAAT 59.065 33.333 0.00 0.00 0.00 1.40
117 118 7.273712 TGCCCATATTAATACGAGTGTGTAAA 58.726 34.615 0.00 0.00 0.00 2.01
118 119 6.818233 TGCCCATATTAATACGAGTGTGTAA 58.182 36.000 0.00 0.00 0.00 2.41
119 120 6.408107 TGCCCATATTAATACGAGTGTGTA 57.592 37.500 0.00 0.00 0.00 2.90
120 121 5.284861 TGCCCATATTAATACGAGTGTGT 57.715 39.130 0.00 0.00 0.00 3.72
121 122 4.690748 CCTGCCCATATTAATACGAGTGTG 59.309 45.833 0.00 0.00 0.00 3.82
122 123 4.347000 ACCTGCCCATATTAATACGAGTGT 59.653 41.667 0.00 0.00 0.00 3.55
123 124 4.894784 ACCTGCCCATATTAATACGAGTG 58.105 43.478 0.00 0.00 0.00 3.51
124 125 6.675413 TTACCTGCCCATATTAATACGAGT 57.325 37.500 0.00 0.00 0.00 4.18
125 126 7.383687 TCTTTACCTGCCCATATTAATACGAG 58.616 38.462 0.00 0.00 0.00 4.18
126 127 7.305813 TCTTTACCTGCCCATATTAATACGA 57.694 36.000 0.00 0.00 0.00 3.43
127 128 9.661563 TTATCTTTACCTGCCCATATTAATACG 57.338 33.333 0.00 0.00 0.00 3.06
136 137 8.890472 TCTAATATGTTATCTTTACCTGCCCAT 58.110 33.333 0.00 0.00 0.00 4.00
137 138 8.270137 TCTAATATGTTATCTTTACCTGCCCA 57.730 34.615 0.00 0.00 0.00 5.36
138 139 9.740710 ATTCTAATATGTTATCTTTACCTGCCC 57.259 33.333 0.00 0.00 0.00 5.36
162 163 9.929722 CGTGTGTTGTAGCATGTTATAAATATT 57.070 29.630 0.43 0.00 0.00 1.28
163 164 8.556194 CCGTGTGTTGTAGCATGTTATAAATAT 58.444 33.333 0.43 0.00 0.00 1.28
164 165 7.549842 ACCGTGTGTTGTAGCATGTTATAAATA 59.450 33.333 0.43 0.00 0.00 1.40
165 166 6.373216 ACCGTGTGTTGTAGCATGTTATAAAT 59.627 34.615 0.43 0.00 0.00 1.40
166 167 5.701750 ACCGTGTGTTGTAGCATGTTATAAA 59.298 36.000 0.43 0.00 0.00 1.40
167 168 5.239351 ACCGTGTGTTGTAGCATGTTATAA 58.761 37.500 0.00 0.00 0.00 0.98
168 169 4.823157 ACCGTGTGTTGTAGCATGTTATA 58.177 39.130 0.00 0.00 0.00 0.98
169 170 3.670625 ACCGTGTGTTGTAGCATGTTAT 58.329 40.909 0.00 0.00 0.00 1.89
170 171 3.061322 GACCGTGTGTTGTAGCATGTTA 58.939 45.455 0.00 0.00 0.00 2.41
171 172 1.871039 GACCGTGTGTTGTAGCATGTT 59.129 47.619 0.00 0.00 0.00 2.71
172 173 1.202592 TGACCGTGTGTTGTAGCATGT 60.203 47.619 0.00 0.00 0.00 3.21
173 174 1.507562 TGACCGTGTGTTGTAGCATG 58.492 50.000 0.00 0.00 0.00 4.06
174 175 2.472695 ATGACCGTGTGTTGTAGCAT 57.527 45.000 0.00 0.00 0.00 3.79
175 176 1.870402 CAATGACCGTGTGTTGTAGCA 59.130 47.619 0.00 0.00 0.00 3.49
176 177 1.871039 ACAATGACCGTGTGTTGTAGC 59.129 47.619 0.00 0.00 33.39 3.58
177 178 2.478894 GGACAATGACCGTGTGTTGTAG 59.521 50.000 0.00 0.00 35.15 2.74
178 179 2.103432 AGGACAATGACCGTGTGTTGTA 59.897 45.455 0.00 0.00 35.15 2.41
179 180 1.134220 AGGACAATGACCGTGTGTTGT 60.134 47.619 0.00 0.00 37.49 3.32
180 181 1.593196 AGGACAATGACCGTGTGTTG 58.407 50.000 0.00 0.00 0.00 3.33
181 182 3.478857 TTAGGACAATGACCGTGTGTT 57.521 42.857 0.00 0.00 0.00 3.32
182 183 3.695830 ATTAGGACAATGACCGTGTGT 57.304 42.857 0.00 0.00 0.00 3.72
183 184 4.755411 ACTATTAGGACAATGACCGTGTG 58.245 43.478 0.00 0.00 0.00 3.82
184 185 6.379133 TCTTACTATTAGGACAATGACCGTGT 59.621 38.462 0.00 0.00 0.00 4.49
185 186 6.802608 TCTTACTATTAGGACAATGACCGTG 58.197 40.000 0.00 0.00 0.00 4.94
186 187 7.598759 ATCTTACTATTAGGACAATGACCGT 57.401 36.000 0.00 0.00 0.00 4.83
187 188 8.361139 AGAATCTTACTATTAGGACAATGACCG 58.639 37.037 0.00 0.00 0.00 4.79
188 189 9.482627 CAGAATCTTACTATTAGGACAATGACC 57.517 37.037 0.00 0.00 0.00 4.02
205 206 9.970395 TCGTTGAAGTAAACTTACAGAATCTTA 57.030 29.630 2.63 0.00 36.11 2.10
206 207 8.882415 TCGTTGAAGTAAACTTACAGAATCTT 57.118 30.769 2.63 0.00 36.11 2.40
233 234 8.755028 GGGAGTGGTACAAATTAACCAATAATT 58.245 33.333 8.39 0.00 46.97 1.40
234 235 8.119891 AGGGAGTGGTACAAATTAACCAATAAT 58.880 33.333 8.39 0.00 46.97 1.28
235 236 7.471890 AGGGAGTGGTACAAATTAACCAATAA 58.528 34.615 8.39 0.00 46.97 1.40
236 237 7.034967 AGGGAGTGGTACAAATTAACCAATA 57.965 36.000 8.39 0.00 46.97 1.90
237 238 5.899278 AGGGAGTGGTACAAATTAACCAAT 58.101 37.500 8.39 7.73 46.97 3.16
238 239 5.318630 GAGGGAGTGGTACAAATTAACCAA 58.681 41.667 8.39 0.00 46.97 3.67
239 240 4.263594 GGAGGGAGTGGTACAAATTAACCA 60.264 45.833 0.00 3.71 44.16 3.67
240 241 4.267536 GGAGGGAGTGGTACAAATTAACC 58.732 47.826 0.00 0.00 44.16 2.85
241 242 3.937079 CGGAGGGAGTGGTACAAATTAAC 59.063 47.826 0.00 0.00 44.16 2.01
242 243 3.583966 ACGGAGGGAGTGGTACAAATTAA 59.416 43.478 0.00 0.00 44.16 1.40
243 244 3.175594 ACGGAGGGAGTGGTACAAATTA 58.824 45.455 0.00 0.00 44.16 1.40
244 245 1.982958 ACGGAGGGAGTGGTACAAATT 59.017 47.619 0.00 0.00 44.16 1.82
245 246 1.652947 ACGGAGGGAGTGGTACAAAT 58.347 50.000 0.00 0.00 44.16 2.32
246 247 1.345415 GAACGGAGGGAGTGGTACAAA 59.655 52.381 0.00 0.00 44.16 2.83
247 248 0.971386 GAACGGAGGGAGTGGTACAA 59.029 55.000 0.00 0.00 44.16 2.41
248 249 0.178955 TGAACGGAGGGAGTGGTACA 60.179 55.000 0.00 0.00 0.00 2.90
249 250 0.245813 GTGAACGGAGGGAGTGGTAC 59.754 60.000 0.00 0.00 0.00 3.34
250 251 0.113776 AGTGAACGGAGGGAGTGGTA 59.886 55.000 0.00 0.00 0.00 3.25
251 252 0.763223 AAGTGAACGGAGGGAGTGGT 60.763 55.000 0.00 0.00 0.00 4.16
252 253 0.396811 AAAGTGAACGGAGGGAGTGG 59.603 55.000 0.00 0.00 0.00 4.00
253 254 1.873591 CAAAAGTGAACGGAGGGAGTG 59.126 52.381 0.00 0.00 0.00 3.51
254 255 1.489230 ACAAAAGTGAACGGAGGGAGT 59.511 47.619 0.00 0.00 0.00 3.85
255 256 2.256117 ACAAAAGTGAACGGAGGGAG 57.744 50.000 0.00 0.00 0.00 4.30
256 257 3.135167 ACTTACAAAAGTGAACGGAGGGA 59.865 43.478 0.00 0.00 44.40 4.20
257 258 3.473625 ACTTACAAAAGTGAACGGAGGG 58.526 45.455 0.00 0.00 44.40 4.30
258 259 3.183775 CGACTTACAAAAGTGAACGGAGG 59.816 47.826 0.00 0.00 46.09 4.30
259 260 3.800506 ACGACTTACAAAAGTGAACGGAG 59.199 43.478 0.00 0.00 46.09 4.63
260 261 3.784338 ACGACTTACAAAAGTGAACGGA 58.216 40.909 0.00 0.00 46.09 4.69
261 262 4.525411 AACGACTTACAAAAGTGAACGG 57.475 40.909 0.00 0.00 46.09 4.44
262 263 5.552807 TGAAACGACTTACAAAAGTGAACG 58.447 37.500 0.00 0.00 46.09 3.95
263 264 6.681599 GTCTGAAACGACTTACAAAAGTGAAC 59.318 38.462 0.00 0.00 46.09 3.18
264 265 6.369340 TGTCTGAAACGACTTACAAAAGTGAA 59.631 34.615 0.00 0.00 46.09 3.18
265 266 5.870433 TGTCTGAAACGACTTACAAAAGTGA 59.130 36.000 0.00 0.00 46.09 3.41
266 267 6.102006 TGTCTGAAACGACTTACAAAAGTG 57.898 37.500 0.00 0.00 46.09 3.16
284 285 5.179045 AGCAGTTCATTTTCAGTTGTCTG 57.821 39.130 0.00 0.00 42.54 3.51
285 286 5.841957 AAGCAGTTCATTTTCAGTTGTCT 57.158 34.783 0.00 0.00 0.00 3.41
286 287 5.276536 GCAAAGCAGTTCATTTTCAGTTGTC 60.277 40.000 0.00 0.00 0.00 3.18
287 288 4.567959 GCAAAGCAGTTCATTTTCAGTTGT 59.432 37.500 0.00 0.00 0.00 3.32
288 289 4.567558 TGCAAAGCAGTTCATTTTCAGTTG 59.432 37.500 0.00 0.00 33.32 3.16
289 290 4.567959 GTGCAAAGCAGTTCATTTTCAGTT 59.432 37.500 0.00 0.00 40.08 3.16
290 291 4.114794 GTGCAAAGCAGTTCATTTTCAGT 58.885 39.130 0.00 0.00 40.08 3.41
291 292 4.208460 CAGTGCAAAGCAGTTCATTTTCAG 59.792 41.667 0.00 0.00 40.54 3.02
292 293 4.114073 CAGTGCAAAGCAGTTCATTTTCA 58.886 39.130 0.00 0.00 40.54 2.69
293 294 4.207841 GTCAGTGCAAAGCAGTTCATTTTC 59.792 41.667 0.00 0.00 40.54 2.29
294 295 4.114794 GTCAGTGCAAAGCAGTTCATTTT 58.885 39.130 0.00 0.00 40.54 1.82
295 296 3.382546 AGTCAGTGCAAAGCAGTTCATTT 59.617 39.130 0.00 0.00 40.54 2.32
296 297 2.954318 AGTCAGTGCAAAGCAGTTCATT 59.046 40.909 0.00 0.00 40.54 2.57
297 298 2.292569 CAGTCAGTGCAAAGCAGTTCAT 59.707 45.455 0.00 0.00 40.54 2.57
298 299 1.672363 CAGTCAGTGCAAAGCAGTTCA 59.328 47.619 0.00 0.00 40.54 3.18
299 300 1.942657 TCAGTCAGTGCAAAGCAGTTC 59.057 47.619 0.00 0.00 40.54 3.01
300 301 2.042686 TCAGTCAGTGCAAAGCAGTT 57.957 45.000 0.00 0.00 40.54 3.16
301 302 2.042686 TTCAGTCAGTGCAAAGCAGT 57.957 45.000 0.00 0.00 43.59 4.40
302 303 3.243301 ACATTTCAGTCAGTGCAAAGCAG 60.243 43.478 0.00 0.00 40.08 4.24
303 304 2.689471 ACATTTCAGTCAGTGCAAAGCA 59.311 40.909 0.00 0.00 35.60 3.91
304 305 3.004106 AGACATTTCAGTCAGTGCAAAGC 59.996 43.478 0.00 0.00 40.98 3.51
305 306 4.825546 AGACATTTCAGTCAGTGCAAAG 57.174 40.909 0.00 0.00 40.98 2.77
306 307 5.125257 TCAAAGACATTTCAGTCAGTGCAAA 59.875 36.000 0.00 0.00 40.98 3.68
307 308 4.639755 TCAAAGACATTTCAGTCAGTGCAA 59.360 37.500 0.00 0.00 40.98 4.08
308 309 4.198530 TCAAAGACATTTCAGTCAGTGCA 58.801 39.130 0.00 0.00 40.98 4.57
309 310 4.818534 TCAAAGACATTTCAGTCAGTGC 57.181 40.909 0.00 0.00 40.98 4.40
310 311 5.210715 GCTTCAAAGACATTTCAGTCAGTG 58.789 41.667 0.00 0.00 40.98 3.66
311 312 4.276926 GGCTTCAAAGACATTTCAGTCAGT 59.723 41.667 0.00 0.00 40.98 3.41
312 313 4.518211 AGGCTTCAAAGACATTTCAGTCAG 59.482 41.667 0.00 0.00 40.98 3.51
313 314 4.464008 AGGCTTCAAAGACATTTCAGTCA 58.536 39.130 0.00 0.00 40.98 3.41
314 315 5.218139 CAAGGCTTCAAAGACATTTCAGTC 58.782 41.667 0.00 0.00 36.14 3.51
315 316 4.646492 ACAAGGCTTCAAAGACATTTCAGT 59.354 37.500 0.00 0.00 36.14 3.41
316 317 5.192327 ACAAGGCTTCAAAGACATTTCAG 57.808 39.130 0.00 0.00 36.14 3.02
317 318 6.707440 TTACAAGGCTTCAAAGACATTTCA 57.293 33.333 0.00 0.00 36.14 2.69
318 319 7.706607 ACTTTTACAAGGCTTCAAAGACATTTC 59.293 33.333 21.45 0.00 36.14 2.17
319 320 7.492344 CACTTTTACAAGGCTTCAAAGACATTT 59.508 33.333 21.45 4.65 36.14 2.32
320 321 6.980397 CACTTTTACAAGGCTTCAAAGACATT 59.020 34.615 21.45 4.91 36.14 2.71
321 322 6.321181 TCACTTTTACAAGGCTTCAAAGACAT 59.679 34.615 21.45 5.17 36.14 3.06
322 323 5.650266 TCACTTTTACAAGGCTTCAAAGACA 59.350 36.000 21.45 10.17 36.14 3.41
323 324 6.131544 TCACTTTTACAAGGCTTCAAAGAC 57.868 37.500 21.45 0.00 33.82 3.01
324 325 6.151985 TGTTCACTTTTACAAGGCTTCAAAGA 59.848 34.615 21.45 7.96 33.82 2.52
325 326 6.329496 TGTTCACTTTTACAAGGCTTCAAAG 58.671 36.000 16.25 16.25 33.82 2.77
326 327 6.151985 TCTGTTCACTTTTACAAGGCTTCAAA 59.848 34.615 0.00 0.00 33.82 2.69
327 328 5.650266 TCTGTTCACTTTTACAAGGCTTCAA 59.350 36.000 0.00 0.00 33.82 2.69
328 329 5.189928 TCTGTTCACTTTTACAAGGCTTCA 58.810 37.500 0.00 0.00 33.82 3.02
329 330 5.278022 CCTCTGTTCACTTTTACAAGGCTTC 60.278 44.000 0.00 0.00 33.82 3.86
330 331 4.580580 CCTCTGTTCACTTTTACAAGGCTT 59.419 41.667 0.00 0.00 33.82 4.35
331 332 4.137543 CCTCTGTTCACTTTTACAAGGCT 58.862 43.478 0.00 0.00 33.82 4.58
332 333 3.253432 CCCTCTGTTCACTTTTACAAGGC 59.747 47.826 0.00 0.00 33.82 4.35
333 334 4.714632 TCCCTCTGTTCACTTTTACAAGG 58.285 43.478 0.00 0.00 33.82 3.61
334 335 5.368989 ACTCCCTCTGTTCACTTTTACAAG 58.631 41.667 0.00 0.00 35.92 3.16
335 336 5.367945 ACTCCCTCTGTTCACTTTTACAA 57.632 39.130 0.00 0.00 0.00 2.41
336 337 5.601313 AGTACTCCCTCTGTTCACTTTTACA 59.399 40.000 0.00 0.00 0.00 2.41
337 338 6.099159 AGTACTCCCTCTGTTCACTTTTAC 57.901 41.667 0.00 0.00 0.00 2.01
338 339 7.288389 TGTTAGTACTCCCTCTGTTCACTTTTA 59.712 37.037 0.00 0.00 0.00 1.52
339 340 6.099269 TGTTAGTACTCCCTCTGTTCACTTTT 59.901 38.462 0.00 0.00 0.00 2.27
340 341 5.601313 TGTTAGTACTCCCTCTGTTCACTTT 59.399 40.000 0.00 0.00 0.00 2.66
341 342 5.145564 TGTTAGTACTCCCTCTGTTCACTT 58.854 41.667 0.00 0.00 0.00 3.16
342 343 4.737578 TGTTAGTACTCCCTCTGTTCACT 58.262 43.478 0.00 0.00 0.00 3.41
343 344 5.464030 TTGTTAGTACTCCCTCTGTTCAC 57.536 43.478 0.00 0.00 0.00 3.18
344 345 6.571731 CGATTTGTTAGTACTCCCTCTGTTCA 60.572 42.308 0.00 0.00 0.00 3.18
345 346 5.805994 CGATTTGTTAGTACTCCCTCTGTTC 59.194 44.000 0.00 0.00 0.00 3.18
346 347 5.479375 TCGATTTGTTAGTACTCCCTCTGTT 59.521 40.000 0.00 0.00 0.00 3.16
347 348 5.014858 TCGATTTGTTAGTACTCCCTCTGT 58.985 41.667 0.00 0.00 0.00 3.41
348 349 5.578005 TCGATTTGTTAGTACTCCCTCTG 57.422 43.478 0.00 0.00 0.00 3.35
349 350 5.069251 CCATCGATTTGTTAGTACTCCCTCT 59.931 44.000 0.00 0.00 0.00 3.69
350 351 5.068723 TCCATCGATTTGTTAGTACTCCCTC 59.931 44.000 0.00 0.00 0.00 4.30
351 352 4.960469 TCCATCGATTTGTTAGTACTCCCT 59.040 41.667 0.00 0.00 0.00 4.20
352 353 5.272283 TCCATCGATTTGTTAGTACTCCC 57.728 43.478 0.00 0.00 0.00 4.30
353 354 7.787725 ATTTCCATCGATTTGTTAGTACTCC 57.212 36.000 0.00 0.00 0.00 3.85
354 355 7.640240 GCAATTTCCATCGATTTGTTAGTACTC 59.360 37.037 0.00 0.00 0.00 2.59
355 356 7.472543 GCAATTTCCATCGATTTGTTAGTACT 58.527 34.615 0.00 0.00 0.00 2.73
356 357 6.410914 CGCAATTTCCATCGATTTGTTAGTAC 59.589 38.462 0.00 0.00 0.00 2.73
418 419 5.541845 TGAGACTTATGTTGACCACTCTTG 58.458 41.667 0.00 0.00 0.00 3.02
456 457 6.551227 AGGGAAAAGCTGAGACTTATGTTTTT 59.449 34.615 0.00 0.00 0.00 1.94
457 458 6.071320 AGGGAAAAGCTGAGACTTATGTTTT 58.929 36.000 0.00 0.00 0.00 2.43
458 459 5.635120 AGGGAAAAGCTGAGACTTATGTTT 58.365 37.500 0.00 0.00 0.00 2.83
459 460 5.248380 AGGGAAAAGCTGAGACTTATGTT 57.752 39.130 0.00 0.00 0.00 2.71
460 461 4.621747 CGAGGGAAAAGCTGAGACTTATGT 60.622 45.833 0.00 0.00 0.00 2.29
461 462 3.868077 CGAGGGAAAAGCTGAGACTTATG 59.132 47.826 0.00 0.00 0.00 1.90
462 463 3.680196 GCGAGGGAAAAGCTGAGACTTAT 60.680 47.826 0.00 0.00 0.00 1.73
463 464 2.353803 GCGAGGGAAAAGCTGAGACTTA 60.354 50.000 0.00 0.00 0.00 2.24
464 465 1.609320 GCGAGGGAAAAGCTGAGACTT 60.609 52.381 0.00 0.00 0.00 3.01
465 466 0.036858 GCGAGGGAAAAGCTGAGACT 60.037 55.000 0.00 0.00 0.00 3.24
466 467 0.320771 TGCGAGGGAAAAGCTGAGAC 60.321 55.000 0.00 0.00 0.00 3.36
467 468 0.396435 TTGCGAGGGAAAAGCTGAGA 59.604 50.000 0.00 0.00 0.00 3.27
468 469 1.238439 TTTGCGAGGGAAAAGCTGAG 58.762 50.000 0.00 0.00 0.00 3.35
469 470 1.608590 CTTTTGCGAGGGAAAAGCTGA 59.391 47.619 8.96 0.00 34.53 4.26
470 471 1.608590 TCTTTTGCGAGGGAAAAGCTG 59.391 47.619 14.91 0.00 39.34 4.24
471 472 1.981256 TCTTTTGCGAGGGAAAAGCT 58.019 45.000 14.91 0.00 39.34 3.74
472 473 2.793278 TTCTTTTGCGAGGGAAAAGC 57.207 45.000 14.91 0.00 39.34 3.51
492 493 8.451908 AGTACAAAGCTGAGACTTATGTTTTT 57.548 30.769 0.00 0.00 0.00 1.94
493 494 9.555727 TTAGTACAAAGCTGAGACTTATGTTTT 57.444 29.630 0.00 0.00 0.00 2.43
499 500 8.294954 AGCTATTAGTACAAAGCTGAGACTTA 57.705 34.615 9.58 0.00 43.46 2.24
522 523 0.867753 CCATCGTGTCAGTAGCGAGC 60.868 60.000 0.00 0.00 38.06 5.03
576 577 0.742505 TTCGCTCGTATGTAGGGGTG 59.257 55.000 0.00 0.00 0.00 4.61
589 596 2.099263 TGCACCTACAGTAGATTCGCTC 59.901 50.000 9.38 0.00 0.00 5.03
649 656 7.485913 CCCAGTATTGAAAACATTCTGAATTCG 59.514 37.037 0.00 0.00 0.00 3.34
759 770 2.404559 CAGGGCCCTGTACTTATACCA 58.595 52.381 39.52 0.00 39.10 3.25
819 830 0.898326 GACAGGCCGGGGAAAACAAT 60.898 55.000 8.08 0.00 0.00 2.71
844 855 3.130160 CTGGCTGGGAAGAAGCGC 61.130 66.667 0.00 0.00 41.78 5.92
885 896 1.005215 AGGGCAGTCAAAGCTAGCATT 59.995 47.619 18.83 8.73 0.00 3.56
1105 1116 2.488771 TAGAAGTCGCCTCCACCGGA 62.489 60.000 9.46 0.00 0.00 5.14
1106 1117 1.392710 ATAGAAGTCGCCTCCACCGG 61.393 60.000 0.00 0.00 0.00 5.28
1107 1118 0.249073 CATAGAAGTCGCCTCCACCG 60.249 60.000 0.00 0.00 0.00 4.94
1108 1119 0.105039 CCATAGAAGTCGCCTCCACC 59.895 60.000 0.00 0.00 0.00 4.61
1109 1120 0.530870 GCCATAGAAGTCGCCTCCAC 60.531 60.000 0.00 0.00 0.00 4.02
1110 1121 1.686325 GGCCATAGAAGTCGCCTCCA 61.686 60.000 0.00 0.00 38.41 3.86
1111 1122 1.069935 GGCCATAGAAGTCGCCTCC 59.930 63.158 0.00 0.00 38.41 4.30
1112 1123 4.760757 GGCCATAGAAGTCGCCTC 57.239 61.111 0.00 0.00 38.41 4.70
1113 1124 4.382852 AGGCCATAGAAGTCGCCT 57.617 55.556 5.01 0.00 46.96 5.52
1252 1263 4.462834 AGCTCAAGTAGTACATGCACAGTA 59.537 41.667 2.52 0.00 0.00 2.74
1283 1294 7.442364 TCAGATGCTAGAAAAAGGTATACATGC 59.558 37.037 5.01 0.00 0.00 4.06
1284 1295 8.893219 TCAGATGCTAGAAAAAGGTATACATG 57.107 34.615 5.01 0.00 0.00 3.21
1297 1308 4.445305 CCCATCCAACATCAGATGCTAGAA 60.445 45.833 10.59 0.00 38.85 2.10
1327 1338 2.355756 CTCATTGCCCAATCTGTAACCG 59.644 50.000 0.00 0.00 0.00 4.44
1356 1367 4.078516 GGAGCCGCCGTGGTAGTT 62.079 66.667 0.00 0.00 41.21 2.24
1439 1450 1.679153 CCTAGGAAGTCCTCGAGCTTC 59.321 57.143 19.02 19.02 44.77 3.86
1445 1456 3.121019 CCGCCTAGGAAGTCCTCG 58.879 66.667 14.75 4.17 44.77 4.63
1457 1468 3.780173 GAGAAGGAGCTGCCGCCT 61.780 66.667 0.00 5.89 43.73 5.52
1465 1476 2.507324 GCACGTCGGAGAAGGAGC 60.507 66.667 0.00 0.00 41.22 4.70
1497 1508 1.139095 CGGACGAGAACAGGTAGCC 59.861 63.158 0.00 0.00 0.00 3.93
1542 1553 2.356553 TACGCCGTGTGAACCAGC 60.357 61.111 0.00 0.00 0.00 4.85
1814 1825 2.358369 TCCGACGACGTGCTCTCT 60.358 61.111 4.58 0.00 37.88 3.10
1823 1834 2.087009 CCGCTTGTTCTCCGACGAC 61.087 63.158 0.00 0.00 0.00 4.34
1904 1915 1.536284 CGGTAGATCGAGGTCCTTTGC 60.536 57.143 0.00 0.00 0.00 3.68
1945 1956 0.250513 GAAGCCAGGAAGATCCACGT 59.749 55.000 0.00 0.00 39.61 4.49
1957 1968 0.901124 AGGTCACTAGCAGAAGCCAG 59.099 55.000 0.00 0.00 43.56 4.85
2057 2068 9.843334 AGAAAGAAACTACTAGTGATCTAAACG 57.157 33.333 5.39 0.00 28.74 3.60
2063 2074 9.361315 GGAGAAAGAAAGAAACTACTAGTGATC 57.639 37.037 5.39 0.00 0.00 2.92
2064 2075 8.315482 GGGAGAAAGAAAGAAACTACTAGTGAT 58.685 37.037 5.39 0.00 0.00 3.06
2066 2077 6.874664 GGGGAGAAAGAAAGAAACTACTAGTG 59.125 42.308 5.39 0.00 0.00 2.74
2067 2078 6.013553 GGGGGAGAAAGAAAGAAACTACTAGT 60.014 42.308 0.00 0.00 0.00 2.57
2068 2079 6.213802 AGGGGGAGAAAGAAAGAAACTACTAG 59.786 42.308 0.00 0.00 0.00 2.57
2069 2080 6.089502 AGGGGGAGAAAGAAAGAAACTACTA 58.910 40.000 0.00 0.00 0.00 1.82
2091 2108 4.872691 AGAAAGATTAGTGTGCAATCGAGG 59.127 41.667 0.00 0.00 37.45 4.63
2110 2127 6.983307 TCAAAAATGGCATCGAAAAGAAGAAA 59.017 30.769 0.00 0.00 0.00 2.52
2148 2165 3.976793 TCTAACCGTACGCATTCTAGG 57.023 47.619 10.49 0.00 0.00 3.02
2155 2172 2.086869 AGCTACTTCTAACCGTACGCA 58.913 47.619 10.49 0.00 0.00 5.24
2183 2200 6.923199 ACACAGGATCCAAAAATCATCTTT 57.077 33.333 15.82 0.00 0.00 2.52
2255 2272 9.515020 GCGATCATGATTTTGTTCCTAATTTTA 57.485 29.630 10.14 0.00 0.00 1.52
2256 2273 8.253113 AGCGATCATGATTTTGTTCCTAATTTT 58.747 29.630 10.14 0.00 0.00 1.82
2257 2274 7.775120 AGCGATCATGATTTTGTTCCTAATTT 58.225 30.769 10.14 0.00 0.00 1.82
2258 2275 7.284034 AGAGCGATCATGATTTTGTTCCTAATT 59.716 33.333 10.14 0.00 0.00 1.40
2259 2276 6.769822 AGAGCGATCATGATTTTGTTCCTAAT 59.230 34.615 10.14 0.00 0.00 1.73
2260 2277 6.115446 AGAGCGATCATGATTTTGTTCCTAA 58.885 36.000 10.14 0.00 0.00 2.69
2261 2278 5.674525 AGAGCGATCATGATTTTGTTCCTA 58.325 37.500 10.14 0.00 0.00 2.94
2262 2279 4.521146 AGAGCGATCATGATTTTGTTCCT 58.479 39.130 10.14 0.00 0.00 3.36
2263 2280 4.889832 AGAGCGATCATGATTTTGTTCC 57.110 40.909 10.14 0.00 0.00 3.62
2264 2281 6.595772 ACTAGAGCGATCATGATTTTGTTC 57.404 37.500 10.14 10.30 0.00 3.18
2265 2282 8.668510 AATACTAGAGCGATCATGATTTTGTT 57.331 30.769 10.14 1.22 0.00 2.83
2266 2283 8.668510 AAATACTAGAGCGATCATGATTTTGT 57.331 30.769 10.14 5.40 0.00 2.83
2267 2284 9.378597 CAAAATACTAGAGCGATCATGATTTTG 57.621 33.333 19.22 19.22 36.19 2.44
2268 2285 8.072567 GCAAAATACTAGAGCGATCATGATTTT 58.927 33.333 10.14 6.61 0.00 1.82
2372 2389 3.908103 ACCTAAAGGCTAAGTGAAGTGGA 59.092 43.478 0.00 0.00 39.32 4.02
2422 2439 3.149196 ACCACTAGTGCATTTTGTGAGG 58.851 45.455 17.86 1.62 0.00 3.86
2430 2447 7.342284 AGTCAACTATAGTACCACTAGTGCATT 59.658 37.037 17.86 6.65 33.66 3.56
2482 2500 3.185188 CCTACGCAGATCATGGAAATTCG 59.815 47.826 0.00 0.00 0.00 3.34
2583 2601 1.542767 CCTGTCCATCTATGCCTGCAG 60.543 57.143 6.78 6.78 0.00 4.41
2622 2640 2.846206 TCTCCTGCAACTATTGTCCCAT 59.154 45.455 0.00 0.00 0.00 4.00
2652 2670 0.875059 CTTGTTTCCCCTTGCGAGTC 59.125 55.000 0.00 0.00 0.00 3.36
2735 2772 5.332743 TCCCATAGAAGTTGCCAAAAGATT 58.667 37.500 0.00 0.00 0.00 2.40
2738 2775 4.463891 ACATCCCATAGAAGTTGCCAAAAG 59.536 41.667 0.00 0.00 0.00 2.27
2775 2812 9.301897 ACACCAGAAAGAAGAAAGCTTAATTAT 57.698 29.630 0.00 0.00 33.61 1.28
2782 2819 3.879892 GACACACCAGAAAGAAGAAAGCT 59.120 43.478 0.00 0.00 0.00 3.74
2784 2821 5.818136 TTGACACACCAGAAAGAAGAAAG 57.182 39.130 0.00 0.00 0.00 2.62
2790 2827 2.880268 CAGCATTGACACACCAGAAAGA 59.120 45.455 0.00 0.00 0.00 2.52
2798 2835 1.589716 GGAGGCCAGCATTGACACAC 61.590 60.000 5.01 0.00 0.00 3.82
2810 2847 0.029163 TCATATTCCAGGGGAGGCCA 60.029 55.000 5.01 0.00 31.21 5.36
2812 2849 1.140312 TGTCATATTCCAGGGGAGGC 58.860 55.000 0.00 0.00 31.21 4.70
2817 2854 3.931907 TTCCAGTGTCATATTCCAGGG 57.068 47.619 0.00 0.00 0.00 4.45
2825 2862 7.219322 CCATGATCAGTATTTCCAGTGTCATA 58.781 38.462 0.09 0.00 0.00 2.15
2835 2872 5.533903 ACTGCATTCCCATGATCAGTATTTC 59.466 40.000 0.09 0.00 34.01 2.17
2850 2887 5.437060 TCTTACCCAGATAAACTGCATTCC 58.563 41.667 0.00 0.00 44.52 3.01
2878 2915 6.506513 CGAATACTTGCACGAAAGATCAGTAC 60.507 42.308 0.00 0.00 0.00 2.73
2879 2916 5.515270 CGAATACTTGCACGAAAGATCAGTA 59.485 40.000 0.00 0.00 0.00 2.74
2882 2919 4.490743 TCGAATACTTGCACGAAAGATCA 58.509 39.130 0.00 0.00 0.00 2.92
2909 2946 8.988546 AACACTTGCCCATACAAATATATGTA 57.011 30.769 0.00 0.00 39.91 2.29
2916 2953 4.406456 TCAGAACACTTGCCCATACAAAT 58.594 39.130 0.00 0.00 0.00 2.32
2917 2954 3.826524 TCAGAACACTTGCCCATACAAA 58.173 40.909 0.00 0.00 0.00 2.83
2918 2955 3.500448 TCAGAACACTTGCCCATACAA 57.500 42.857 0.00 0.00 0.00 2.41
2919 2956 3.346315 CATCAGAACACTTGCCCATACA 58.654 45.455 0.00 0.00 0.00 2.29
2920 2957 2.098117 GCATCAGAACACTTGCCCATAC 59.902 50.000 0.00 0.00 0.00 2.39
2930 2967 4.116238 GGACTTAGCTAGCATCAGAACAC 58.884 47.826 18.83 4.59 0.00 3.32
2949 2986 6.201234 GGAGAAATTAAAGTGCTATCGAGGAC 59.799 42.308 0.00 0.00 44.06 3.85
2950 2987 6.098409 AGGAGAAATTAAAGTGCTATCGAGGA 59.902 38.462 0.00 0.00 0.00 3.71
2954 2991 5.237344 CCCAGGAGAAATTAAAGTGCTATCG 59.763 44.000 0.00 0.00 0.00 2.92
2969 3006 2.238521 GCAAATGTTCACCCAGGAGAA 58.761 47.619 0.00 0.00 0.00 2.87
2973 3010 1.468520 CTACGCAAATGTTCACCCAGG 59.531 52.381 0.00 0.00 0.00 4.45
2976 3013 0.170339 GCCTACGCAAATGTTCACCC 59.830 55.000 0.00 0.00 34.03 4.61
3270 3308 7.285629 TGTGATGTTGTAAAACATTACTTGGGA 59.714 33.333 25.65 9.74 44.83 4.37
3271 3309 7.429633 TGTGATGTTGTAAAACATTACTTGGG 58.570 34.615 25.65 0.00 44.83 4.12
3387 3426 7.318141 CACGAGAAAAACCACTACTATTCCTA 58.682 38.462 0.00 0.00 0.00 2.94
3417 3456 4.193090 TGGTTACACCGCGATATTTTGAT 58.807 39.130 8.23 0.00 42.58 2.57
3452 3491 3.630312 ACCAGTTTTCACGCACTGTAAAT 59.370 39.130 0.00 0.00 39.09 1.40
3459 3498 0.237498 GGCTACCAGTTTTCACGCAC 59.763 55.000 0.00 0.00 0.00 5.34
3653 3694 7.660208 ACTCCAGTACAGTAATTAAACAAGTGG 59.340 37.037 0.00 6.65 0.00 4.00
3665 3706 6.633325 ACTAGGACTACTCCAGTACAGTAA 57.367 41.667 0.00 0.00 41.09 2.24
3690 3731 1.233285 AAGCACAGCACAGCTACTGC 61.233 55.000 7.36 7.36 40.90 4.40
3691 3732 0.795085 GAAGCACAGCACAGCTACTG 59.205 55.000 8.59 8.59 40.90 2.74
3762 3809 1.593933 GCGTCCTACGAGACTACTGAG 59.406 57.143 3.22 0.00 46.05 3.35
3766 3813 1.531470 GCTTGCGTCCTACGAGACTAC 60.531 57.143 3.22 0.00 46.05 2.73
3769 3816 1.868251 CGCTTGCGTCCTACGAGAC 60.868 63.158 6.86 0.00 46.05 3.36
3793 3840 6.509317 CGCCATTTGAACGCATAAAAATAT 57.491 33.333 0.00 0.00 0.00 1.28
3919 3970 1.409661 GCTGGGGATATTCAAACCGGT 60.410 52.381 0.00 0.00 0.00 5.28
3920 3971 1.318576 GCTGGGGATATTCAAACCGG 58.681 55.000 0.00 0.00 0.00 5.28
4051 4106 1.691976 TGTGTCTACCCAACTGACCAG 59.308 52.381 0.00 0.00 0.00 4.00
4071 4126 1.666872 GGTTAGCTCACCAACGCGT 60.667 57.895 12.37 5.58 36.73 6.01
4351 4410 2.124736 CAGCCATGGTGGTACCCG 60.125 66.667 14.67 0.00 40.46 5.28
4576 4635 1.153429 GTAAACTGCGGCCCTCGAT 60.153 57.895 0.00 0.00 42.43 3.59
4843 4902 1.003839 ATTGAACGGCGAGCTCCAA 60.004 52.632 16.62 10.03 0.00 3.53
4889 4948 3.181534 CGTGGCAGTTGATTAGTAACACG 60.182 47.826 0.00 0.00 42.17 4.49
4911 4970 2.292237 GCAACGTACGTTACAACAAGC 58.708 47.619 31.29 23.75 36.46 4.01
4931 4990 4.764336 TCCGGTTACTCGTGCGCG 62.764 66.667 14.79 14.79 39.92 6.86
4945 5004 7.611213 AATTACAGAACTTAATTGGTCTCCG 57.389 36.000 0.00 0.00 29.72 4.63
5033 5092 1.334243 GTCCTCCTACTTCACCGATCG 59.666 57.143 8.51 8.51 0.00 3.69
5074 5133 2.296073 AATCCCCAAAACTAACGGCA 57.704 45.000 0.00 0.00 0.00 5.69
5157 5216 2.155155 GTGTTCAAACTGACGACGATCC 59.845 50.000 0.00 0.00 0.00 3.36
5158 5217 2.792674 TGTGTTCAAACTGACGACGATC 59.207 45.455 0.00 0.00 0.00 3.69
5165 5229 5.057149 ACTCCTACATGTGTTCAAACTGAC 58.943 41.667 9.11 0.00 0.00 3.51
5207 5276 3.343584 CGACTGCACGAGACGATAGTTG 61.344 54.545 0.00 0.00 41.66 3.16
5208 5277 1.202043 CGACTGCACGAGACGATAGTT 60.202 52.381 0.00 0.00 41.66 2.24
5209 5278 0.374063 CGACTGCACGAGACGATAGT 59.626 55.000 0.00 0.00 41.66 2.12
5210 5279 0.374063 ACGACTGCACGAGACGATAG 59.626 55.000 3.48 0.00 41.66 2.08
5211 5280 0.096454 CACGACTGCACGAGACGATA 59.904 55.000 3.48 0.00 41.66 2.92
5212 5281 1.154207 CACGACTGCACGAGACGAT 60.154 57.895 3.48 0.00 41.66 3.73
5213 5282 2.251371 CACGACTGCACGAGACGA 59.749 61.111 3.48 0.00 41.66 4.20
5248 5317 1.210931 CACTGCTCATTTGGCCGTG 59.789 57.895 0.00 0.00 38.21 4.94
5293 5363 2.286294 GTCGATCGAGCGGAGTAGTTAA 59.714 50.000 24.18 0.00 0.00 2.01
5326 5421 2.827190 CCGCATGCATGTGCCTCT 60.827 61.111 30.54 0.00 42.06 3.69
5351 5446 2.281484 GCAGTCAAAGCCCGGTCA 60.281 61.111 0.00 0.00 0.00 4.02
5352 5447 1.600916 AAGCAGTCAAAGCCCGGTC 60.601 57.895 0.00 0.00 0.00 4.79
5353 5448 1.898574 CAAGCAGTCAAAGCCCGGT 60.899 57.895 0.00 0.00 0.00 5.28
5354 5449 1.580845 CTCAAGCAGTCAAAGCCCGG 61.581 60.000 0.00 0.00 0.00 5.73
5355 5450 1.580845 CCTCAAGCAGTCAAAGCCCG 61.581 60.000 0.00 0.00 0.00 6.13
5356 5451 0.538287 ACCTCAAGCAGTCAAAGCCC 60.538 55.000 0.00 0.00 0.00 5.19
5357 5452 2.079925 CTACCTCAAGCAGTCAAAGCC 58.920 52.381 0.00 0.00 0.00 4.35
5358 5453 1.466558 GCTACCTCAAGCAGTCAAAGC 59.533 52.381 0.00 0.00 42.30 3.51
5359 5454 3.051081 AGCTACCTCAAGCAGTCAAAG 57.949 47.619 0.00 0.00 45.30 2.77
5360 5455 3.578716 ACTAGCTACCTCAAGCAGTCAAA 59.421 43.478 0.00 0.00 45.30 2.69
5361 5456 3.056536 CACTAGCTACCTCAAGCAGTCAA 60.057 47.826 0.00 0.00 45.30 3.18
5362 5457 2.493675 CACTAGCTACCTCAAGCAGTCA 59.506 50.000 0.00 0.00 45.30 3.41
5363 5458 2.737039 GCACTAGCTACCTCAAGCAGTC 60.737 54.545 0.00 0.00 45.30 3.51
5364 5459 1.205893 GCACTAGCTACCTCAAGCAGT 59.794 52.381 0.00 0.00 45.30 4.40
5365 5460 1.933247 GCACTAGCTACCTCAAGCAG 58.067 55.000 0.00 0.00 45.30 4.24
5380 5475 1.627834 AGCTAGAGCAGGAAAAGCACT 59.372 47.619 4.01 0.00 45.16 4.40
5431 5526 6.813152 GGATTGAACATGTTCCCTGTATTTTG 59.187 38.462 30.66 0.00 38.77 2.44
5432 5527 6.070824 GGGATTGAACATGTTCCCTGTATTTT 60.071 38.462 30.66 8.91 43.81 1.82
5436 5531 3.332187 TGGGATTGAACATGTTCCCTGTA 59.668 43.478 30.66 12.98 46.73 2.74
5437 5532 2.109834 TGGGATTGAACATGTTCCCTGT 59.890 45.455 30.66 16.42 46.73 4.00
5451 5551 5.506317 GCGAATTATCCTTTCAGTGGGATTG 60.506 44.000 4.92 0.00 41.86 2.67
5536 5636 5.356751 TGCAAAGCTCTTGTTGAAGAAAGTA 59.643 36.000 0.00 0.00 37.77 2.24
5563 5665 5.509498 CCTCTGTTTATGGGAAATCCTTCA 58.491 41.667 0.00 0.00 36.20 3.02
5573 5675 1.035139 GCATGCCCTCTGTTTATGGG 58.965 55.000 6.36 0.00 43.62 4.00
5607 5709 5.298347 GCGCTCCCTTCAATTACTATACTT 58.702 41.667 0.00 0.00 0.00 2.24
5611 5713 2.706190 AGGCGCTCCCTTCAATTACTAT 59.294 45.455 7.64 0.00 43.06 2.12
5613 5715 0.912486 AGGCGCTCCCTTCAATTACT 59.088 50.000 7.64 0.00 43.06 2.24
5620 5722 4.847444 GCTCCAGGCGCTCCCTTC 62.847 72.222 7.64 0.00 43.06 3.46
5665 5767 8.894768 ATAGATTGAACTGAAATAGTAGTGGC 57.105 34.615 0.00 0.00 39.18 5.01
5693 5795 7.857404 ACCAAGGCTGAATACATACTAGTAT 57.143 36.000 9.71 9.71 36.29 2.12
5696 5798 9.209175 GAATAACCAAGGCTGAATACATACTAG 57.791 37.037 0.00 0.00 0.00 2.57
5699 5801 7.801716 TGAATAACCAAGGCTGAATACATAC 57.198 36.000 0.00 0.00 0.00 2.39
5700 5802 8.995027 AATGAATAACCAAGGCTGAATACATA 57.005 30.769 0.00 0.00 0.00 2.29
5701 5803 7.902920 AATGAATAACCAAGGCTGAATACAT 57.097 32.000 0.00 0.00 0.00 2.29
5702 5804 7.178274 ACAAATGAATAACCAAGGCTGAATACA 59.822 33.333 0.00 0.00 0.00 2.29
5703 5805 7.489113 CACAAATGAATAACCAAGGCTGAATAC 59.511 37.037 0.00 0.00 0.00 1.89
5704 5806 7.178274 ACACAAATGAATAACCAAGGCTGAATA 59.822 33.333 0.00 0.00 0.00 1.75
5705 5807 6.014327 ACACAAATGAATAACCAAGGCTGAAT 60.014 34.615 0.00 0.00 0.00 2.57
5706 5808 5.304101 ACACAAATGAATAACCAAGGCTGAA 59.696 36.000 0.00 0.00 0.00 3.02
5713 5815 5.363868 TGGAACCACACAAATGAATAACCAA 59.636 36.000 0.00 0.00 0.00 3.67
5749 5851 1.882623 ACTTTGAAGCTTAGCCTGCAC 59.117 47.619 0.00 0.00 0.00 4.57
5751 5853 2.154462 TGACTTTGAAGCTTAGCCTGC 58.846 47.619 0.00 0.00 0.00 4.85
5755 5857 7.141363 TGAAAATCTTGACTTTGAAGCTTAGC 58.859 34.615 0.00 0.00 0.00 3.09
5758 5860 8.823818 CATTTGAAAATCTTGACTTTGAAGCTT 58.176 29.630 0.00 0.00 0.00 3.74
5830 5933 7.614192 TGGTCAACTTCTATGTACATAGACTCA 59.386 37.037 34.86 23.60 46.69 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.