Multiple sequence alignment - TraesCS2B01G378000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G378000 chr2B 100.000 2576 0 0 1 2576 540814706 540812131 0.000000e+00 4758.0
1 TraesCS2B01G378000 chr2D 91.501 1059 51 12 641 1661 459344380 459343323 0.000000e+00 1421.0
2 TraesCS2B01G378000 chr2D 89.049 347 20 3 1 347 459344977 459344649 5.130000e-112 414.0
3 TraesCS2B01G378000 chr2D 78.618 304 39 17 1799 2085 459342215 459341921 7.320000e-41 178.0
4 TraesCS2B01G378000 chr2D 77.596 366 31 21 2113 2476 459341928 459341612 9.470000e-40 174.0
5 TraesCS2B01G378000 chr2D 81.657 169 12 7 1593 1753 459343172 459343015 3.480000e-24 122.0
6 TraesCS2B01G378000 chr2A 89.955 896 60 15 828 1705 602718835 602717952 0.000000e+00 1129.0
7 TraesCS2B01G378000 chr2A 89.491 904 64 15 828 1705 602688942 602688044 0.000000e+00 1114.0
8 TraesCS2B01G378000 chr2A 90.747 843 56 11 838 1661 602766885 602766046 0.000000e+00 1105.0
9 TraesCS2B01G378000 chr2A 87.860 659 55 11 1734 2383 602671757 602671115 0.000000e+00 750.0
10 TraesCS2B01G378000 chr2A 93.069 101 7 0 373 473 668750461 668750361 5.740000e-32 148.0
11 TraesCS2B01G378000 chr7B 83.133 664 84 15 968 1619 699562559 699561912 4.780000e-162 580.0
12 TraesCS2B01G378000 chr7B 84.027 601 94 2 983 1582 699524603 699524004 6.180000e-161 577.0
13 TraesCS2B01G378000 chr7B 80.389 668 92 23 1003 1657 699354569 699355210 3.000000e-129 472.0
14 TraesCS2B01G378000 chr7B 86.016 379 47 2 968 1346 699361925 699362297 3.990000e-108 401.0
15 TraesCS2B01G378000 chr7B 94.792 96 5 0 373 468 40293640 40293735 1.600000e-32 150.0
16 TraesCS2B01G378000 chr7A 82.101 514 74 7 997 1504 700685332 700684831 8.520000e-115 424.0
17 TraesCS2B01G378000 chr7A 93.220 59 4 0 1524 1582 700684838 700684780 1.270000e-13 87.9
18 TraesCS2B01G378000 chr6D 86.243 189 23 3 155 343 327010630 327010815 4.350000e-48 202.0
19 TraesCS2B01G378000 chr5B 98.020 101 2 0 373 473 517656516 517656616 2.630000e-40 176.0
20 TraesCS2B01G378000 chr5B 95.833 96 3 1 373 468 693674906 693675000 1.230000e-33 154.0
21 TraesCS2B01G378000 chr5D 95.238 105 4 1 369 473 299883974 299883871 5.700000e-37 165.0
22 TraesCS2B01G378000 chr5D 95.098 102 5 0 372 473 371831699 371831598 7.380000e-36 161.0
23 TraesCS2B01G378000 chr7D 83.721 172 25 2 162 331 375974899 375974729 2.650000e-35 159.0
24 TraesCS2B01G378000 chr7D 94.059 101 6 0 373 473 565060327 565060227 1.230000e-33 154.0
25 TraesCS2B01G378000 chr3D 95.876 97 4 0 373 469 500675421 500675325 9.540000e-35 158.0
26 TraesCS2B01G378000 chr3D 82.105 190 24 4 154 342 14175142 14174962 1.230000e-33 154.0
27 TraesCS2B01G378000 chr6A 81.218 197 27 5 147 343 465611799 465611985 1.600000e-32 150.0
28 TraesCS2B01G378000 chr1D 93.684 95 6 0 373 467 270227226 270227320 2.670000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G378000 chr2B 540812131 540814706 2575 True 4758.00 4758 100.0000 1 2576 1 chr2B.!!$R1 2575
1 TraesCS2B01G378000 chr2D 459341612 459344977 3365 True 461.80 1421 83.6842 1 2476 5 chr2D.!!$R1 2475
2 TraesCS2B01G378000 chr2A 602717952 602718835 883 True 1129.00 1129 89.9550 828 1705 1 chr2A.!!$R3 877
3 TraesCS2B01G378000 chr2A 602688044 602688942 898 True 1114.00 1114 89.4910 828 1705 1 chr2A.!!$R2 877
4 TraesCS2B01G378000 chr2A 602766046 602766885 839 True 1105.00 1105 90.7470 838 1661 1 chr2A.!!$R4 823
5 TraesCS2B01G378000 chr2A 602671115 602671757 642 True 750.00 750 87.8600 1734 2383 1 chr2A.!!$R1 649
6 TraesCS2B01G378000 chr7B 699561912 699562559 647 True 580.00 580 83.1330 968 1619 1 chr7B.!!$R2 651
7 TraesCS2B01G378000 chr7B 699524004 699524603 599 True 577.00 577 84.0270 983 1582 1 chr7B.!!$R1 599
8 TraesCS2B01G378000 chr7B 699354569 699355210 641 False 472.00 472 80.3890 1003 1657 1 chr7B.!!$F2 654
9 TraesCS2B01G378000 chr7A 700684780 700685332 552 True 255.95 424 87.6605 997 1582 2 chr7A.!!$R1 585

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
424 463 0.163788 GCGAGACACCATTGTTGACG 59.836 55.0 0.0 0.0 35.47 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2093 3276 0.32336 GGGGAGCTAACACATGGCAA 60.323 55.0 0.0 0.0 38.13 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.548067 CCCGCAAGTGTAACAGACTTCT 60.548 50.000 0.00 0.00 41.43 2.85
51 52 7.072030 GCAAATACTCATATTCAATCGGACAC 58.928 38.462 0.00 0.00 30.27 3.67
54 55 9.477484 AAATACTCATATTCAATCGGACACTAC 57.523 33.333 0.00 0.00 30.27 2.73
95 96 3.912528 TCATCCCCATTTCCTATCCTCTG 59.087 47.826 0.00 0.00 0.00 3.35
110 111 2.005451 CCTCTGCTGTTGATTTCCTCG 58.995 52.381 0.00 0.00 0.00 4.63
125 126 4.778213 TTCCTCGATTTCCATCATCCTT 57.222 40.909 0.00 0.00 0.00 3.36
129 130 4.040217 CCTCGATTTCCATCATCCTTCTCT 59.960 45.833 0.00 0.00 0.00 3.10
161 162 3.626729 CCCCTCATCAGAGCTGGATTTTT 60.627 47.826 0.00 0.00 40.68 1.94
172 173 3.263425 AGCTGGATTTTTAGGTCTTCGGA 59.737 43.478 0.00 0.00 0.00 4.55
181 182 9.110502 GATTTTTAGGTCTTCGGATTGACTAAT 57.889 33.333 10.16 0.00 34.01 1.73
307 308 9.535878 CCTAGTCAAACTGAATATCTAAAGACC 57.464 37.037 0.00 0.00 0.00 3.85
330 331 2.713877 TGCCCGACTTATAAACCCAAC 58.286 47.619 0.00 0.00 0.00 3.77
333 334 2.282407 CCGACTTATAAACCCAACCGG 58.718 52.381 0.00 0.00 37.81 5.28
374 413 8.642885 GCATGTTAAAGATATCGATGTACTCAG 58.357 37.037 8.54 0.00 0.00 3.35
375 414 9.684448 CATGTTAAAGATATCGATGTACTCAGT 57.316 33.333 8.54 0.00 0.00 3.41
376 415 9.684448 ATGTTAAAGATATCGATGTACTCAGTG 57.316 33.333 8.54 0.00 0.00 3.66
377 416 8.135529 TGTTAAAGATATCGATGTACTCAGTGG 58.864 37.037 8.54 0.00 0.00 4.00
378 417 4.775058 AGATATCGATGTACTCAGTGGC 57.225 45.455 8.54 0.00 0.00 5.01
379 418 3.189495 AGATATCGATGTACTCAGTGGCG 59.811 47.826 8.54 0.00 0.00 5.69
380 419 0.385751 ATCGATGTACTCAGTGGCGG 59.614 55.000 0.00 0.00 0.00 6.13
381 420 0.678684 TCGATGTACTCAGTGGCGGA 60.679 55.000 0.00 0.00 0.00 5.54
382 421 0.248661 CGATGTACTCAGTGGCGGAG 60.249 60.000 0.00 0.00 38.36 4.63
396 435 3.248043 CGGAGCCAGGATTTGAACA 57.752 52.632 0.00 0.00 0.00 3.18
397 436 1.755179 CGGAGCCAGGATTTGAACAT 58.245 50.000 0.00 0.00 0.00 2.71
398 437 1.402968 CGGAGCCAGGATTTGAACATG 59.597 52.381 0.00 0.00 0.00 3.21
399 438 2.726821 GGAGCCAGGATTTGAACATGA 58.273 47.619 0.00 0.00 0.00 3.07
400 439 2.686915 GGAGCCAGGATTTGAACATGAG 59.313 50.000 0.00 0.00 0.00 2.90
401 440 2.686915 GAGCCAGGATTTGAACATGAGG 59.313 50.000 0.00 0.00 0.00 3.86
402 441 1.753073 GCCAGGATTTGAACATGAGGG 59.247 52.381 0.00 0.00 0.00 4.30
403 442 2.381911 CCAGGATTTGAACATGAGGGG 58.618 52.381 0.00 0.00 0.00 4.79
404 443 2.381911 CAGGATTTGAACATGAGGGGG 58.618 52.381 0.00 0.00 0.00 5.40
418 457 2.438434 GGGGGCGAGACACCATTG 60.438 66.667 0.00 0.00 0.00 2.82
419 458 2.351276 GGGGCGAGACACCATTGT 59.649 61.111 0.00 0.00 39.32 2.71
420 459 1.303317 GGGGCGAGACACCATTGTT 60.303 57.895 0.00 0.00 35.47 2.83
421 460 1.586154 GGGGCGAGACACCATTGTTG 61.586 60.000 0.00 0.00 35.47 3.33
422 461 0.605319 GGGCGAGACACCATTGTTGA 60.605 55.000 0.00 0.00 35.47 3.18
423 462 0.517316 GGCGAGACACCATTGTTGAC 59.483 55.000 0.00 0.00 35.47 3.18
424 463 0.163788 GCGAGACACCATTGTTGACG 59.836 55.000 0.00 0.00 35.47 4.35
425 464 0.163788 CGAGACACCATTGTTGACGC 59.836 55.000 0.00 0.00 35.47 5.19
426 465 1.225855 GAGACACCATTGTTGACGCA 58.774 50.000 0.00 0.00 35.47 5.24
427 466 1.601903 GAGACACCATTGTTGACGCAA 59.398 47.619 0.00 0.00 35.47 4.85
428 467 2.020720 AGACACCATTGTTGACGCAAA 58.979 42.857 0.00 0.00 35.47 3.68
429 468 2.116366 GACACCATTGTTGACGCAAAC 58.884 47.619 0.00 0.00 35.47 2.93
430 469 1.532921 ACACCATTGTTGACGCAAACG 60.533 47.619 0.00 0.00 37.88 3.60
431 470 1.018148 ACCATTGTTGACGCAAACGA 58.982 45.000 0.00 0.00 43.93 3.85
432 471 1.268335 ACCATTGTTGACGCAAACGAC 60.268 47.619 0.00 0.00 43.93 4.34
433 472 1.268285 CCATTGTTGACGCAAACGACA 60.268 47.619 0.00 0.00 43.93 4.35
434 473 2.036217 CATTGTTGACGCAAACGACAG 58.964 47.619 0.00 0.00 44.27 3.51
435 474 1.360820 TTGTTGACGCAAACGACAGA 58.639 45.000 0.00 0.00 44.27 3.41
436 475 1.360820 TGTTGACGCAAACGACAGAA 58.639 45.000 0.00 0.00 44.27 3.02
437 476 1.937223 TGTTGACGCAAACGACAGAAT 59.063 42.857 0.00 0.00 44.27 2.40
438 477 3.124560 TGTTGACGCAAACGACAGAATA 58.875 40.909 0.00 0.00 44.27 1.75
439 478 3.743911 TGTTGACGCAAACGACAGAATAT 59.256 39.130 0.00 0.00 44.27 1.28
440 479 4.143200 TGTTGACGCAAACGACAGAATATC 60.143 41.667 0.00 0.00 44.27 1.63
441 480 3.580731 TGACGCAAACGACAGAATATCA 58.419 40.909 0.00 0.00 43.93 2.15
442 481 3.366724 TGACGCAAACGACAGAATATCAC 59.633 43.478 0.00 0.00 43.93 3.06
443 482 3.322369 ACGCAAACGACAGAATATCACA 58.678 40.909 0.00 0.00 43.93 3.58
444 483 3.743911 ACGCAAACGACAGAATATCACAA 59.256 39.130 0.00 0.00 43.93 3.33
445 484 4.391830 ACGCAAACGACAGAATATCACAAT 59.608 37.500 0.00 0.00 43.93 2.71
446 485 5.579119 ACGCAAACGACAGAATATCACAATA 59.421 36.000 0.00 0.00 43.93 1.90
447 486 6.257849 ACGCAAACGACAGAATATCACAATAT 59.742 34.615 0.00 0.00 43.93 1.28
448 487 7.436970 ACGCAAACGACAGAATATCACAATATA 59.563 33.333 0.00 0.00 43.93 0.86
449 488 8.435430 CGCAAACGACAGAATATCACAATATAT 58.565 33.333 0.00 0.00 43.93 0.86
475 514 7.959689 AAGTCTCATGATAGCATCAATGTAC 57.040 36.000 0.00 0.00 43.50 2.90
476 515 7.300556 AGTCTCATGATAGCATCAATGTACT 57.699 36.000 0.00 3.67 43.50 2.73
477 516 7.153315 AGTCTCATGATAGCATCAATGTACTG 58.847 38.462 0.00 0.00 43.50 2.74
478 517 7.015001 AGTCTCATGATAGCATCAATGTACTGA 59.985 37.037 0.00 0.00 43.50 3.41
479 518 7.116090 GTCTCATGATAGCATCAATGTACTGAC 59.884 40.741 0.00 0.00 43.50 3.51
480 519 7.015001 TCTCATGATAGCATCAATGTACTGACT 59.985 37.037 0.00 0.00 43.50 3.41
481 520 8.181904 TCATGATAGCATCAATGTACTGACTA 57.818 34.615 0.00 0.00 43.50 2.59
482 521 8.302438 TCATGATAGCATCAATGTACTGACTAG 58.698 37.037 0.00 0.00 43.50 2.57
483 522 6.986250 TGATAGCATCAATGTACTGACTAGG 58.014 40.000 0.00 0.00 36.11 3.02
486 525 6.054860 AGCATCAATGTACTGACTAGGTTT 57.945 37.500 0.00 0.00 0.00 3.27
539 578 5.632244 ACGGTGCGTTTAATAGGAATTTT 57.368 34.783 0.00 0.00 36.35 1.82
601 641 3.639094 GGTCTCCATCTTTCTAGCTAGCA 59.361 47.826 18.83 1.65 0.00 3.49
602 642 4.283212 GGTCTCCATCTTTCTAGCTAGCAT 59.717 45.833 18.83 4.67 0.00 3.79
607 670 4.202295 CCATCTTTCTAGCTAGCATGTCCA 60.202 45.833 18.83 0.00 0.00 4.02
623 686 2.782222 CCATGCATGTGCCTCCTGC 61.782 63.158 24.58 0.00 41.18 4.85
643 706 3.635331 GCGACCGCAATAGAATAGTACA 58.365 45.455 9.73 0.00 41.49 2.90
645 708 4.085210 GCGACCGCAATAGAATAGTACAAC 60.085 45.833 9.73 0.00 41.49 3.32
646 709 5.038683 CGACCGCAATAGAATAGTACAACA 58.961 41.667 0.00 0.00 0.00 3.33
697 785 4.202409 ACTTTAGAGGCCAAGCTATCATCC 60.202 45.833 5.01 0.00 0.00 3.51
706 794 3.812053 CCAAGCTATCATCCTGTTGTAGC 59.188 47.826 0.00 0.00 38.37 3.58
710 798 2.315925 ATCATCCTGTTGTAGCCACG 57.684 50.000 0.00 0.00 0.00 4.94
715 803 0.953960 CCTGTTGTAGCCACGGGAAC 60.954 60.000 0.00 0.00 31.76 3.62
721 809 1.270625 TGTAGCCACGGGAACTTGAAG 60.271 52.381 0.00 0.00 0.00 3.02
773 861 4.796231 CGCCCCTGTTCGAGTCCG 62.796 72.222 0.00 0.00 37.07 4.79
796 884 1.144969 CCACTTCGTACAACGTGCAT 58.855 50.000 0.00 0.00 43.14 3.96
819 907 1.865865 CAGCACTAGTTGGTGTCGTT 58.134 50.000 13.16 0.00 46.81 3.85
872 960 2.962569 AGCGCGTCAAGCTGTCTA 59.037 55.556 8.43 0.00 44.22 2.59
904 1008 3.235292 CTGTTGCGCGGCTTCGAAA 62.235 57.895 8.83 0.00 35.61 3.46
911 1015 1.134694 GCGGCTTCGAAATCCACAC 59.865 57.895 14.26 2.41 35.61 3.82
915 1031 0.804989 GCTTCGAAATCCACACCAGG 59.195 55.000 0.00 0.00 0.00 4.45
921 1037 1.815003 GAAATCCACACCAGGAAGCAG 59.185 52.381 0.00 0.00 41.92 4.24
980 1103 2.234613 CGTTTTCCGCAGCAGAAGA 58.765 52.632 0.00 0.00 0.00 2.87
1105 1228 0.729140 CGCCGATGCCAAACAAGAAC 60.729 55.000 0.00 0.00 0.00 3.01
1271 1397 4.803908 GGAGGCAAGGGCGAAGGG 62.804 72.222 0.00 0.00 42.47 3.95
1372 1519 8.072567 CAGCAAAGCAAGGTAGATATTACAATC 58.927 37.037 0.00 0.00 0.00 2.67
1415 1574 0.674895 AGGAATCAGCAACTCGGCAC 60.675 55.000 0.00 0.00 35.83 5.01
1460 1622 2.654877 GCAGCAAGCCAGCATGTT 59.345 55.556 0.00 0.00 37.23 2.71
1569 1734 0.400594 CCAACGAGTTCCCTTCCCTT 59.599 55.000 0.00 0.00 0.00 3.95
1670 2064 3.884693 TGTTCGTGTAGTTCAGTAGGTGA 59.115 43.478 0.00 0.00 0.00 4.02
1717 2117 5.096169 ACAATTGTCTTACTCGATCGACTG 58.904 41.667 15.15 8.36 0.00 3.51
1727 2127 8.710551 TCTTACTCGATCGACTGTTATCTTATC 58.289 37.037 15.15 0.00 0.00 1.75
1728 2128 6.862711 ACTCGATCGACTGTTATCTTATCA 57.137 37.500 15.15 0.00 0.00 2.15
1807 2962 2.003301 CCTCTCGCTGGTAAAAAGAGC 58.997 52.381 0.00 0.00 33.65 4.09
1885 3040 9.663904 AATTCATCGATTTTACAATTATGTCCG 57.336 29.630 0.00 0.00 41.05 4.79
1892 3047 7.633281 CGATTTTACAATTATGTCCGTACACAC 59.367 37.037 0.00 0.00 41.05 3.82
1896 3051 8.692110 TTACAATTATGTCCGTACACACTAAG 57.308 34.615 0.00 0.00 41.05 2.18
1901 3056 8.836268 ATTATGTCCGTACACACTAAGAAAAA 57.164 30.769 0.00 0.00 38.78 1.94
1914 3088 7.587757 CACACTAAGAAAAAGTCATTGTGCTAC 59.412 37.037 0.00 0.00 0.00 3.58
2112 3296 0.323360 TTGCCATGTGTTAGCTCCCC 60.323 55.000 0.00 0.00 0.00 4.81
2114 3298 1.926426 GCCATGTGTTAGCTCCCCCT 61.926 60.000 0.00 0.00 0.00 4.79
2115 3299 0.181350 CCATGTGTTAGCTCCCCCTC 59.819 60.000 0.00 0.00 0.00 4.30
2116 3300 0.911769 CATGTGTTAGCTCCCCCTCA 59.088 55.000 0.00 0.00 0.00 3.86
2117 3301 1.492176 CATGTGTTAGCTCCCCCTCAT 59.508 52.381 0.00 0.00 0.00 2.90
2132 3316 3.761752 CCCCTCATAACAAATCGGTGTTT 59.238 43.478 5.57 0.00 41.84 2.83
2171 3355 7.174253 TGAGAATTAGCAAATCCGTTAAACAGT 59.826 33.333 0.00 0.00 0.00 3.55
2172 3356 7.882179 AGAATTAGCAAATCCGTTAAACAGTT 58.118 30.769 0.00 0.00 0.00 3.16
2237 3421 1.449778 GGCGGTCAAACTCTAGCCC 60.450 63.158 0.00 0.00 38.72 5.19
2284 3468 2.680352 GTCAGAGGAGGCCGTGGA 60.680 66.667 0.00 0.00 0.00 4.02
2285 3469 2.363018 TCAGAGGAGGCCGTGGAG 60.363 66.667 0.00 0.00 0.00 3.86
2323 3507 0.390492 GGCAAGGCTGTCTTTTGCTT 59.610 50.000 5.97 0.00 44.88 3.91
2324 3508 1.494824 GCAAGGCTGTCTTTTGCTTG 58.505 50.000 0.00 0.00 42.84 4.01
2326 3510 2.735823 CAAGGCTGTCTTTTGCTTGTC 58.264 47.619 0.00 0.00 32.41 3.18
2384 3568 2.102553 GTCGTCAGCTCTACGGGC 59.897 66.667 15.94 7.70 40.68 6.13
2390 3574 1.153549 CAGCTCTACGGGCTCAACC 60.154 63.158 0.00 0.00 38.03 3.77
2400 3584 3.512516 GCTCAACCATGGCGCCTC 61.513 66.667 29.70 1.40 0.00 4.70
2405 3589 4.552365 ACCATGGCGCCTCATCGG 62.552 66.667 29.70 21.28 0.00 4.18
2409 3593 2.134287 ATGGCGCCTCATCGGTAGT 61.134 57.895 29.70 0.00 34.25 2.73
2412 3596 2.782222 GCGCCTCATCGGTAGTGGA 61.782 63.158 0.00 0.00 34.25 4.02
2417 3601 2.877866 CCTCATCGGTAGTGGATAGGT 58.122 52.381 0.00 0.00 0.00 3.08
2428 3612 1.207488 TGGATAGGTGGTGGCTGCTT 61.207 55.000 0.00 0.00 0.00 3.91
2434 3618 4.641645 TGGTGGCTGCTTCCCGTG 62.642 66.667 0.00 0.00 0.00 4.94
2437 3621 4.269523 TGGCTGCTTCCCGTGCTT 62.270 61.111 0.00 0.00 0.00 3.91
2440 3624 2.281761 CTGCTTCCCGTGCTTGGT 60.282 61.111 0.00 0.00 0.00 3.67
2511 3696 3.701205 ACAAGGTGTATGTGATGAGCA 57.299 42.857 0.00 0.00 0.00 4.26
2512 3697 4.019792 ACAAGGTGTATGTGATGAGCAA 57.980 40.909 0.00 0.00 0.00 3.91
2513 3698 4.592942 ACAAGGTGTATGTGATGAGCAAT 58.407 39.130 0.00 0.00 0.00 3.56
2514 3699 4.637534 ACAAGGTGTATGTGATGAGCAATC 59.362 41.667 0.00 0.00 35.67 2.67
2515 3700 4.767578 AGGTGTATGTGATGAGCAATCT 57.232 40.909 1.66 0.00 36.15 2.40
2516 3701 4.701765 AGGTGTATGTGATGAGCAATCTC 58.298 43.478 1.66 0.00 39.78 2.75
2532 3717 9.932207 TGAGCAATCTCAAATAAATCAAACAAT 57.068 25.926 0.00 0.00 45.69 2.71
2548 3733 7.630242 TCAAACAATACCAAAGATCATCTCC 57.370 36.000 0.00 0.00 0.00 3.71
2549 3734 7.405292 TCAAACAATACCAAAGATCATCTCCT 58.595 34.615 0.00 0.00 0.00 3.69
2550 3735 7.554118 TCAAACAATACCAAAGATCATCTCCTC 59.446 37.037 0.00 0.00 0.00 3.71
2551 3736 5.605534 ACAATACCAAAGATCATCTCCTCG 58.394 41.667 0.00 0.00 0.00 4.63
2552 3737 5.129485 ACAATACCAAAGATCATCTCCTCGT 59.871 40.000 0.00 0.00 0.00 4.18
2553 3738 3.533606 ACCAAAGATCATCTCCTCGTG 57.466 47.619 0.00 0.00 0.00 4.35
2554 3739 2.834549 ACCAAAGATCATCTCCTCGTGT 59.165 45.455 0.00 0.00 0.00 4.49
2555 3740 3.118956 ACCAAAGATCATCTCCTCGTGTC 60.119 47.826 0.00 0.00 0.00 3.67
2556 3741 3.111838 CAAAGATCATCTCCTCGTGTCG 58.888 50.000 0.00 0.00 0.00 4.35
2557 3742 0.665835 AGATCATCTCCTCGTGTCGC 59.334 55.000 0.00 0.00 0.00 5.19
2558 3743 0.318275 GATCATCTCCTCGTGTCGCC 60.318 60.000 0.00 0.00 0.00 5.54
2559 3744 1.739338 ATCATCTCCTCGTGTCGCCC 61.739 60.000 0.00 0.00 0.00 6.13
2560 3745 2.043852 ATCTCCTCGTGTCGCCCT 60.044 61.111 0.00 0.00 0.00 5.19
2561 3746 2.122167 ATCTCCTCGTGTCGCCCTC 61.122 63.158 0.00 0.00 0.00 4.30
2562 3747 3.827898 CTCCTCGTGTCGCCCTCC 61.828 72.222 0.00 0.00 0.00 4.30
2566 3751 4.051167 TCGTGTCGCCCTCCCCTA 62.051 66.667 0.00 0.00 0.00 3.53
2567 3752 3.528370 CGTGTCGCCCTCCCCTAG 61.528 72.222 0.00 0.00 0.00 3.02
2568 3753 3.155167 GTGTCGCCCTCCCCTAGG 61.155 72.222 0.06 0.06 46.09 3.02
2575 3760 3.648694 CCTCCCCTAGGGCAACTC 58.351 66.667 23.84 0.00 43.94 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.204688 GTCCGATTGAATATGAGTATTTGCCA 59.795 38.462 0.00 0.00 30.75 4.92
36 37 7.556844 ACAAGAAGTAGTGTCCGATTGAATAT 58.443 34.615 0.00 0.00 0.00 1.28
51 52 5.420421 TGATGGAGAAGAGGACAAGAAGTAG 59.580 44.000 0.00 0.00 0.00 2.57
54 55 4.815533 TGATGGAGAAGAGGACAAGAAG 57.184 45.455 0.00 0.00 0.00 2.85
95 96 3.440173 TGGAAATCGAGGAAATCAACAGC 59.560 43.478 0.00 0.00 0.00 4.40
110 111 7.015098 TCACTCTAGAGAAGGATGATGGAAATC 59.985 40.741 26.57 0.00 0.00 2.17
125 126 1.641192 TGAGGGGCTTCACTCTAGAGA 59.359 52.381 26.57 1.73 34.84 3.10
129 130 2.023984 TCTGATGAGGGGCTTCACTCTA 60.024 50.000 0.00 0.00 34.84 2.43
161 162 8.533657 TGTTTTATTAGTCAATCCGAAGACCTA 58.466 33.333 0.00 0.00 35.38 3.08
293 294 4.003648 CGGGCATGGGTCTTTAGATATTC 58.996 47.826 0.00 0.00 0.00 1.75
307 308 2.227194 GGGTTTATAAGTCGGGCATGG 58.773 52.381 0.00 0.00 0.00 3.66
330 331 1.344438 TGCTCATATTACTCCTGCCGG 59.656 52.381 0.00 0.00 0.00 6.13
333 334 7.442364 TCTTTAACATGCTCATATTACTCCTGC 59.558 37.037 0.00 0.00 0.00 4.85
377 416 0.960364 TGTTCAAATCCTGGCTCCGC 60.960 55.000 0.00 0.00 0.00 5.54
378 417 1.402968 CATGTTCAAATCCTGGCTCCG 59.597 52.381 0.00 0.00 0.00 4.63
379 418 2.686915 CTCATGTTCAAATCCTGGCTCC 59.313 50.000 0.00 0.00 0.00 4.70
380 419 2.686915 CCTCATGTTCAAATCCTGGCTC 59.313 50.000 0.00 0.00 0.00 4.70
381 420 2.622452 CCCTCATGTTCAAATCCTGGCT 60.622 50.000 0.00 0.00 0.00 4.75
382 421 1.753073 CCCTCATGTTCAAATCCTGGC 59.247 52.381 0.00 0.00 0.00 4.85
383 422 2.381911 CCCCTCATGTTCAAATCCTGG 58.618 52.381 0.00 0.00 0.00 4.45
384 423 2.381911 CCCCCTCATGTTCAAATCCTG 58.618 52.381 0.00 0.00 0.00 3.86
385 424 2.834638 CCCCCTCATGTTCAAATCCT 57.165 50.000 0.00 0.00 0.00 3.24
401 440 2.438434 CAATGGTGTCTCGCCCCC 60.438 66.667 0.00 0.00 32.22 5.40
402 441 1.303317 AACAATGGTGTCTCGCCCC 60.303 57.895 0.00 0.00 36.80 5.80
403 442 0.605319 TCAACAATGGTGTCTCGCCC 60.605 55.000 0.00 0.00 36.80 6.13
404 443 0.517316 GTCAACAATGGTGTCTCGCC 59.483 55.000 0.00 0.00 36.80 5.54
405 444 0.163788 CGTCAACAATGGTGTCTCGC 59.836 55.000 0.00 0.00 36.80 5.03
406 445 0.163788 GCGTCAACAATGGTGTCTCG 59.836 55.000 0.00 3.77 36.80 4.04
407 446 1.225855 TGCGTCAACAATGGTGTCTC 58.774 50.000 0.00 0.00 36.80 3.36
408 447 1.674359 TTGCGTCAACAATGGTGTCT 58.326 45.000 0.00 0.00 36.80 3.41
409 448 2.116366 GTTTGCGTCAACAATGGTGTC 58.884 47.619 0.00 0.00 36.80 3.67
410 449 1.532921 CGTTTGCGTCAACAATGGTGT 60.533 47.619 0.00 0.00 40.75 4.16
411 450 1.119635 CGTTTGCGTCAACAATGGTG 58.880 50.000 0.00 0.00 0.00 4.17
412 451 1.018148 TCGTTTGCGTCAACAATGGT 58.982 45.000 0.70 0.00 39.49 3.55
413 452 1.268285 TGTCGTTTGCGTCAACAATGG 60.268 47.619 0.70 0.00 39.49 3.16
414 453 2.036217 CTGTCGTTTGCGTCAACAATG 58.964 47.619 0.70 0.00 35.94 2.82
415 454 1.937223 TCTGTCGTTTGCGTCAACAAT 59.063 42.857 0.70 0.00 35.94 2.71
416 455 1.360820 TCTGTCGTTTGCGTCAACAA 58.639 45.000 0.70 0.00 35.94 2.83
417 456 1.360820 TTCTGTCGTTTGCGTCAACA 58.639 45.000 0.70 0.00 35.94 3.33
418 457 2.663279 ATTCTGTCGTTTGCGTCAAC 57.337 45.000 0.00 0.00 35.94 3.18
419 458 3.991121 TGATATTCTGTCGTTTGCGTCAA 59.009 39.130 0.00 0.00 35.94 3.18
420 459 3.366724 GTGATATTCTGTCGTTTGCGTCA 59.633 43.478 0.00 0.00 39.49 4.35
421 460 3.366724 TGTGATATTCTGTCGTTTGCGTC 59.633 43.478 0.00 0.00 39.49 5.19
422 461 3.322369 TGTGATATTCTGTCGTTTGCGT 58.678 40.909 0.00 0.00 39.49 5.24
423 462 3.989705 TGTGATATTCTGTCGTTTGCG 57.010 42.857 0.00 0.00 39.92 4.85
449 488 9.481340 GTACATTGATGCTATCATGAGACTTAA 57.519 33.333 0.09 0.00 39.39 1.85
450 489 8.864087 AGTACATTGATGCTATCATGAGACTTA 58.136 33.333 0.09 0.00 39.39 2.24
451 490 7.656542 CAGTACATTGATGCTATCATGAGACTT 59.343 37.037 0.09 0.00 39.39 3.01
452 491 7.015001 TCAGTACATTGATGCTATCATGAGACT 59.985 37.037 0.09 0.00 39.39 3.24
453 492 7.116090 GTCAGTACATTGATGCTATCATGAGAC 59.884 40.741 0.09 0.00 39.39 3.36
454 493 7.015001 AGTCAGTACATTGATGCTATCATGAGA 59.985 37.037 0.09 0.00 39.39 3.27
455 494 7.153315 AGTCAGTACATTGATGCTATCATGAG 58.847 38.462 0.09 0.00 39.39 2.90
456 495 7.059202 AGTCAGTACATTGATGCTATCATGA 57.941 36.000 0.00 0.00 39.39 3.07
457 496 7.544915 CCTAGTCAGTACATTGATGCTATCATG 59.455 40.741 0.00 0.00 39.39 3.07
458 497 7.234371 ACCTAGTCAGTACATTGATGCTATCAT 59.766 37.037 0.00 0.00 39.39 2.45
459 498 6.551227 ACCTAGTCAGTACATTGATGCTATCA 59.449 38.462 0.00 0.00 37.55 2.15
460 499 6.987386 ACCTAGTCAGTACATTGATGCTATC 58.013 40.000 0.00 0.00 0.00 2.08
461 500 6.985653 ACCTAGTCAGTACATTGATGCTAT 57.014 37.500 0.00 0.00 0.00 2.97
462 501 6.791867 AACCTAGTCAGTACATTGATGCTA 57.208 37.500 0.00 0.00 0.00 3.49
463 502 5.683876 AACCTAGTCAGTACATTGATGCT 57.316 39.130 0.00 0.00 0.00 3.79
464 503 7.843490 TTAAACCTAGTCAGTACATTGATGC 57.157 36.000 0.00 0.00 0.00 3.91
491 530 7.385478 TCGTGTGTGTGTAAATAGAGCATTAAA 59.615 33.333 0.00 0.00 0.00 1.52
494 533 5.120208 GTCGTGTGTGTGTAAATAGAGCATT 59.880 40.000 0.00 0.00 0.00 3.56
501 540 3.051327 CACCGTCGTGTGTGTGTAAATA 58.949 45.455 5.89 0.00 35.10 1.40
502 541 1.862201 CACCGTCGTGTGTGTGTAAAT 59.138 47.619 5.89 0.00 35.10 1.40
503 542 1.279152 CACCGTCGTGTGTGTGTAAA 58.721 50.000 5.89 0.00 35.10 2.01
506 545 2.888534 GCACCGTCGTGTGTGTGT 60.889 61.111 13.14 0.00 42.39 3.72
507 546 3.983562 CGCACCGTCGTGTGTGTG 61.984 66.667 15.12 8.60 44.02 3.82
514 553 1.202114 TCCTATTAAACGCACCGTCGT 59.798 47.619 0.00 0.00 45.58 4.34
565 605 8.593945 AAGATGGAGACCAGCAATAAATTTAA 57.406 30.769 8.68 0.00 43.12 1.52
570 610 5.819991 AGAAAGATGGAGACCAGCAATAAA 58.180 37.500 8.68 0.00 43.12 1.40
576 616 2.433970 AGCTAGAAAGATGGAGACCAGC 59.566 50.000 0.00 0.00 40.67 4.85
601 641 0.754217 GGAGGCACATGCATGGACAT 60.754 55.000 29.41 18.57 44.36 3.06
602 642 1.378911 GGAGGCACATGCATGGACA 60.379 57.895 29.41 0.00 44.36 4.02
623 686 5.038683 TGTTGTACTATTCTATTGCGGTCG 58.961 41.667 0.00 0.00 0.00 4.79
654 742 9.748708 CTAAAGTTTGGAATCATGAAAACTTCA 57.251 29.630 25.31 16.38 46.67 3.02
655 743 9.965824 TCTAAAGTTTGGAATCATGAAAACTTC 57.034 29.630 25.31 14.53 46.67 3.01
674 762 4.202409 GGATGATAGCTTGGCCTCTAAAGT 60.202 45.833 3.32 0.00 0.00 2.66
697 785 0.034896 AGTTCCCGTGGCTACAACAG 59.965 55.000 0.00 0.00 0.00 3.16
706 794 1.971695 GGGCTTCAAGTTCCCGTGG 60.972 63.158 0.00 0.00 0.00 4.94
710 798 0.811281 CGATTGGGCTTCAAGTTCCC 59.189 55.000 0.00 0.00 38.95 3.97
715 803 2.154462 ACAGTTCGATTGGGCTTCAAG 58.846 47.619 0.00 0.00 38.95 3.02
721 809 0.313672 TTGCAACAGTTCGATTGGGC 59.686 50.000 0.00 4.61 0.00 5.36
773 861 2.049228 CACGTTGTACGAAGTGGAGAC 58.951 52.381 18.43 0.00 46.05 3.36
796 884 1.621814 GACACCAACTAGTGCTGGGTA 59.378 52.381 16.32 0.00 41.67 3.69
806 894 8.796475 AGTTAGATTTAGTAACGACACCAACTA 58.204 33.333 0.00 0.00 35.83 2.24
868 956 7.681125 GCAACAGGCGTGTATATATATAGAC 57.319 40.000 13.22 16.49 35.08 2.59
904 1008 1.001641 GCTGCTTCCTGGTGTGGAT 60.002 57.895 0.00 0.00 35.83 3.41
911 1015 2.359107 TTGCTCGCTGCTTCCTGG 60.359 61.111 0.00 0.00 43.37 4.45
915 1031 0.373024 GATGACTTGCTCGCTGCTTC 59.627 55.000 0.00 0.00 43.37 3.86
921 1037 2.508891 CGACCGATGACTTGCTCGC 61.509 63.158 0.00 0.00 33.63 5.03
977 1097 1.182667 GGCCGGGTAAGCAAATTCTT 58.817 50.000 2.18 0.00 0.00 2.52
980 1103 1.001887 TCGGCCGGGTAAGCAAATT 60.002 52.632 27.83 0.00 0.00 1.82
1145 1271 4.673061 CGAGTAGATCCTTGGTATGATCGC 60.673 50.000 0.00 0.00 41.76 4.58
1271 1397 0.598065 AACTCCATTGTTCGCCTTGC 59.402 50.000 0.00 0.00 0.00 4.01
1272 1398 2.351738 GGAAACTCCATTGTTCGCCTTG 60.352 50.000 0.00 0.00 36.28 3.61
1372 1519 1.937223 TGCTCCGTTGTAGTTGTTGTG 59.063 47.619 0.00 0.00 0.00 3.33
1415 1574 2.278857 CTCCGAATCTGCCCGACG 60.279 66.667 0.00 0.00 0.00 5.12
1460 1622 4.467084 GGGCCGCCTCGTTCATGA 62.467 66.667 9.86 0.00 0.00 3.07
1569 1734 6.017275 GGAAAGCTATCGTCTAGCACTACTTA 60.017 42.308 17.70 0.00 42.68 2.24
1705 2099 6.862711 TGATAAGATAACAGTCGATCGAGT 57.137 37.500 20.09 19.85 0.00 4.18
1706 2100 7.356540 ACTTGATAAGATAACAGTCGATCGAG 58.643 38.462 20.09 10.62 35.33 4.04
1776 2917 2.487762 CCAGCGAGAGGATAGAGATCAC 59.512 54.545 0.00 0.00 33.27 3.06
1885 3040 7.376072 GCACAATGACTTTTTCTTAGTGTGTAC 59.624 37.037 0.00 0.00 0.00 2.90
1892 3047 9.515020 TTTTGTAGCACAATGACTTTTTCTTAG 57.485 29.630 3.15 0.00 38.00 2.18
1896 3051 9.986833 AAAATTTTGTAGCACAATGACTTTTTC 57.013 25.926 1.75 0.00 38.00 2.29
1950 3124 4.165779 CGAGCTTTGAAACAAACACAAGT 58.834 39.130 0.00 0.00 0.00 3.16
1951 3125 3.547468 CCGAGCTTTGAAACAAACACAAG 59.453 43.478 0.00 0.00 0.00 3.16
1952 3126 3.191581 TCCGAGCTTTGAAACAAACACAA 59.808 39.130 0.00 0.00 0.00 3.33
1953 3127 2.750166 TCCGAGCTTTGAAACAAACACA 59.250 40.909 0.00 0.00 0.00 3.72
1954 3128 3.414549 TCCGAGCTTTGAAACAAACAC 57.585 42.857 0.00 0.00 0.00 3.32
1955 3129 4.442375 TTTCCGAGCTTTGAAACAAACA 57.558 36.364 7.33 0.00 0.00 2.83
1956 3130 5.771602 TTTTTCCGAGCTTTGAAACAAAC 57.228 34.783 10.18 0.00 30.64 2.93
2093 3276 0.323360 GGGGAGCTAACACATGGCAA 60.323 55.000 0.00 0.00 38.13 4.52
2097 3280 0.911769 TGAGGGGGAGCTAACACATG 59.088 55.000 0.00 0.00 0.00 3.21
2112 3296 5.880054 AGAAACACCGATTTGTTATGAGG 57.120 39.130 0.00 0.00 38.82 3.86
2194 3378 7.425606 CAAGCTTTAACATCAGTGTACCTTTT 58.574 34.615 0.00 0.00 37.67 2.27
2198 3382 4.379499 GCCAAGCTTTAACATCAGTGTACC 60.379 45.833 0.00 0.00 37.67 3.34
2205 3389 1.810151 GACCGCCAAGCTTTAACATCA 59.190 47.619 0.00 0.00 0.00 3.07
2237 3421 0.842467 AGGGGGAGAAGGGTGACAAG 60.842 60.000 0.00 0.00 0.00 3.16
2284 3468 0.739813 GTCGTCGTAAGGGCATTGCT 60.740 55.000 8.82 0.00 38.47 3.91
2285 3469 1.713830 GTCGTCGTAAGGGCATTGC 59.286 57.895 0.00 0.00 38.47 3.56
2331 3515 2.549282 CGAACTGGCCGTTTGTCG 59.451 61.111 13.03 9.32 35.56 4.35
2333 3517 2.515057 TGCGAACTGGCCGTTTGT 60.515 55.556 21.22 7.02 38.93 2.83
2384 3568 1.442526 GATGAGGCGCCATGGTTGAG 61.443 60.000 31.54 3.99 0.00 3.02
2390 3574 1.665916 CTACCGATGAGGCGCCATG 60.666 63.158 31.54 12.76 46.52 3.66
2400 3584 2.035961 CACCACCTATCCACTACCGATG 59.964 54.545 0.00 0.00 0.00 3.84
2405 3589 1.139058 CAGCCACCACCTATCCACTAC 59.861 57.143 0.00 0.00 0.00 2.73
2409 3593 1.207488 AAGCAGCCACCACCTATCCA 61.207 55.000 0.00 0.00 0.00 3.41
2412 3596 1.609783 GGAAGCAGCCACCACCTAT 59.390 57.895 0.00 0.00 0.00 2.57
2417 3601 4.641645 CACGGGAAGCAGCCACCA 62.642 66.667 7.62 0.00 0.00 4.17
2440 3624 2.698274 TGCTAGTCAAATCGATAGGGCA 59.302 45.455 0.00 0.38 0.00 5.36
2477 3662 8.880244 ACATACACCTTGTGGTATATATGACAT 58.120 33.333 14.66 0.00 46.60 3.06
2478 3663 8.147704 CACATACACCTTGTGGTATATATGACA 58.852 37.037 14.66 0.00 46.60 3.58
2479 3664 8.364894 TCACATACACCTTGTGGTATATATGAC 58.635 37.037 14.66 0.00 46.60 3.06
2480 3665 8.485578 TCACATACACCTTGTGGTATATATGA 57.514 34.615 14.66 5.70 46.60 2.15
2481 3666 9.154847 CATCACATACACCTTGTGGTATATATG 57.845 37.037 4.18 0.00 46.60 1.78
2482 3667 9.100197 TCATCACATACACCTTGTGGTATATAT 57.900 33.333 4.18 0.00 46.60 0.86
2483 3668 8.485578 TCATCACATACACCTTGTGGTATATA 57.514 34.615 4.18 0.00 46.60 0.86
2484 3669 7.373617 TCATCACATACACCTTGTGGTATAT 57.626 36.000 4.18 0.00 46.60 0.86
2485 3670 6.685368 GCTCATCACATACACCTTGTGGTATA 60.685 42.308 4.18 0.00 46.60 1.47
2486 3671 5.674525 CTCATCACATACACCTTGTGGTAT 58.325 41.667 4.18 0.00 46.60 2.73
2487 3672 4.622933 GCTCATCACATACACCTTGTGGTA 60.623 45.833 4.18 0.00 46.60 3.25
2489 3674 2.679837 GCTCATCACATACACCTTGTGG 59.320 50.000 4.18 0.00 43.67 4.17
2490 3675 3.337358 TGCTCATCACATACACCTTGTG 58.663 45.455 0.00 0.00 44.62 3.33
2491 3676 3.701205 TGCTCATCACATACACCTTGT 57.299 42.857 0.00 0.00 0.00 3.16
2492 3677 4.880120 AGATTGCTCATCACATACACCTTG 59.120 41.667 0.11 0.00 33.75 3.61
2493 3678 5.108187 AGATTGCTCATCACATACACCTT 57.892 39.130 0.11 0.00 33.75 3.50
2494 3679 4.162888 TGAGATTGCTCATCACATACACCT 59.837 41.667 0.00 0.00 45.88 4.00
2495 3680 4.445453 TGAGATTGCTCATCACATACACC 58.555 43.478 0.00 0.00 45.88 4.16
2522 3707 8.689972 GGAGATGATCTTTGGTATTGTTTGATT 58.310 33.333 0.00 0.00 0.00 2.57
2523 3708 8.057623 AGGAGATGATCTTTGGTATTGTTTGAT 58.942 33.333 0.00 0.00 0.00 2.57
2524 3709 7.405292 AGGAGATGATCTTTGGTATTGTTTGA 58.595 34.615 0.00 0.00 0.00 2.69
2525 3710 7.466455 CGAGGAGATGATCTTTGGTATTGTTTG 60.466 40.741 0.00 0.00 0.00 2.93
2526 3711 6.540189 CGAGGAGATGATCTTTGGTATTGTTT 59.460 38.462 0.00 0.00 0.00 2.83
2527 3712 6.051717 CGAGGAGATGATCTTTGGTATTGTT 58.948 40.000 0.00 0.00 0.00 2.83
2528 3713 5.129485 ACGAGGAGATGATCTTTGGTATTGT 59.871 40.000 0.00 0.00 0.00 2.71
2529 3714 5.464722 CACGAGGAGATGATCTTTGGTATTG 59.535 44.000 0.00 0.00 0.00 1.90
2530 3715 5.129485 ACACGAGGAGATGATCTTTGGTATT 59.871 40.000 0.00 0.00 0.00 1.89
2531 3716 4.651503 ACACGAGGAGATGATCTTTGGTAT 59.348 41.667 0.00 0.00 0.00 2.73
2532 3717 4.023980 ACACGAGGAGATGATCTTTGGTA 58.976 43.478 0.00 0.00 0.00 3.25
2533 3718 2.834549 ACACGAGGAGATGATCTTTGGT 59.165 45.455 0.00 0.00 0.00 3.67
2534 3719 3.452474 GACACGAGGAGATGATCTTTGG 58.548 50.000 0.00 0.00 0.00 3.28
2535 3720 3.111838 CGACACGAGGAGATGATCTTTG 58.888 50.000 0.00 0.00 0.00 2.77
2536 3721 2.480416 GCGACACGAGGAGATGATCTTT 60.480 50.000 0.00 0.00 0.00 2.52
2537 3722 1.066303 GCGACACGAGGAGATGATCTT 59.934 52.381 0.00 0.00 0.00 2.40
2538 3723 0.665835 GCGACACGAGGAGATGATCT 59.334 55.000 0.00 0.00 0.00 2.75
2539 3724 0.318275 GGCGACACGAGGAGATGATC 60.318 60.000 0.00 0.00 0.00 2.92
2540 3725 1.736586 GGCGACACGAGGAGATGAT 59.263 57.895 0.00 0.00 0.00 2.45
2541 3726 2.415608 GGGCGACACGAGGAGATGA 61.416 63.158 0.00 0.00 0.00 2.92
2542 3727 2.105128 GGGCGACACGAGGAGATG 59.895 66.667 0.00 0.00 0.00 2.90
2543 3728 2.043852 AGGGCGACACGAGGAGAT 60.044 61.111 0.00 0.00 0.00 2.75
2544 3729 2.750637 GAGGGCGACACGAGGAGA 60.751 66.667 0.00 0.00 0.00 3.71
2545 3730 3.827898 GGAGGGCGACACGAGGAG 61.828 72.222 0.00 0.00 0.00 3.69
2549 3734 4.051167 TAGGGGAGGGCGACACGA 62.051 66.667 0.00 0.00 0.00 4.35
2550 3735 3.528370 CTAGGGGAGGGCGACACG 61.528 72.222 0.00 0.00 0.00 4.49
2551 3736 3.155167 CCTAGGGGAGGGCGACAC 61.155 72.222 0.00 0.00 42.39 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.