Multiple sequence alignment - TraesCS2B01G377400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G377400 chr2B 100.000 2545 0 0 1 2545 540525132 540527676 0.000000e+00 4700
1 TraesCS2B01G377400 chr2B 93.377 604 36 1 1 600 622445784 622445181 0.000000e+00 891
2 TraesCS2B01G377400 chr2B 93.333 600 39 1 1 600 221390362 221389764 0.000000e+00 885
3 TraesCS2B01G377400 chr2B 84.222 469 55 5 601 1050 797444899 797444431 3.010000e-119 438
4 TraesCS2B01G377400 chr2D 90.223 1974 158 12 600 2545 12544105 12542139 0.000000e+00 2543
5 TraesCS2B01G377400 chr2D 89.407 1973 171 22 600 2545 590929803 590927842 0.000000e+00 2451
6 TraesCS2B01G377400 chr7B 89.618 1965 175 16 602 2545 685254374 685252418 0.000000e+00 2471
7 TraesCS2B01G377400 chr7B 86.327 1960 179 32 601 2544 648212425 648214311 0.000000e+00 2052
8 TraesCS2B01G377400 chr7B 86.195 1963 186 35 601 2544 648202539 648204435 0.000000e+00 2045
9 TraesCS2B01G377400 chr6A 88.990 1980 179 16 600 2545 574946043 574944069 0.000000e+00 2412
10 TraesCS2B01G377400 chr7D 89.149 1963 171 22 598 2545 565949621 565947686 0.000000e+00 2407
11 TraesCS2B01G377400 chr7D 93.167 600 40 1 1 600 251055268 251055866 0.000000e+00 880
12 TraesCS2B01G377400 chr7D 93.167 600 38 2 1 600 164951732 164952328 0.000000e+00 878
13 TraesCS2B01G377400 chr3B 89.139 1952 181 20 601 2532 124502329 124500389 0.000000e+00 2401
14 TraesCS2B01G377400 chr3B 88.612 1967 190 22 601 2545 124560191 124558237 0.000000e+00 2361
15 TraesCS2B01G377400 chr3A 88.629 1970 194 22 593 2545 634659847 634657891 0.000000e+00 2370
16 TraesCS2B01G377400 chr5D 91.509 1696 119 16 851 2536 353835367 353833687 0.000000e+00 2311
17 TraesCS2B01G377400 chr5D 87.861 1730 163 26 601 2313 357075968 357074269 0.000000e+00 1988
18 TraesCS2B01G377400 chr3D 89.686 1658 154 13 894 2545 80249123 80250769 0.000000e+00 2098
19 TraesCS2B01G377400 chr3D 87.349 1739 162 26 597 2313 573731191 573732893 0.000000e+00 1940
20 TraesCS2B01G377400 chr3D 93.155 599 40 1 3 600 476788755 476789353 0.000000e+00 878
21 TraesCS2B01G377400 chr3D 85.619 299 42 1 591 889 321956802 321956505 1.900000e-81 313
22 TraesCS2B01G377400 chr6D 88.395 1732 145 19 601 2313 329896761 329895067 0.000000e+00 2034
23 TraesCS2B01G377400 chrUn 87.224 1722 164 27 601 2308 355013877 355015556 0.000000e+00 1910
24 TraesCS2B01G377400 chr5B 94.167 600 35 0 1 600 139201330 139201929 0.000000e+00 915
25 TraesCS2B01G377400 chr1B 93.833 600 35 2 1 600 467750314 467750911 0.000000e+00 902
26 TraesCS2B01G377400 chr4D 93.478 598 37 1 3 600 146052369 146052964 0.000000e+00 887
27 TraesCS2B01G377400 chr4B 93.311 598 40 0 3 600 495643943 495643346 0.000000e+00 883


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G377400 chr2B 540525132 540527676 2544 False 4700 4700 100.000 1 2545 1 chr2B.!!$F1 2544
1 TraesCS2B01G377400 chr2B 622445181 622445784 603 True 891 891 93.377 1 600 1 chr2B.!!$R2 599
2 TraesCS2B01G377400 chr2B 221389764 221390362 598 True 885 885 93.333 1 600 1 chr2B.!!$R1 599
3 TraesCS2B01G377400 chr2D 12542139 12544105 1966 True 2543 2543 90.223 600 2545 1 chr2D.!!$R1 1945
4 TraesCS2B01G377400 chr2D 590927842 590929803 1961 True 2451 2451 89.407 600 2545 1 chr2D.!!$R2 1945
5 TraesCS2B01G377400 chr7B 685252418 685254374 1956 True 2471 2471 89.618 602 2545 1 chr7B.!!$R1 1943
6 TraesCS2B01G377400 chr7B 648212425 648214311 1886 False 2052 2052 86.327 601 2544 1 chr7B.!!$F2 1943
7 TraesCS2B01G377400 chr7B 648202539 648204435 1896 False 2045 2045 86.195 601 2544 1 chr7B.!!$F1 1943
8 TraesCS2B01G377400 chr6A 574944069 574946043 1974 True 2412 2412 88.990 600 2545 1 chr6A.!!$R1 1945
9 TraesCS2B01G377400 chr7D 565947686 565949621 1935 True 2407 2407 89.149 598 2545 1 chr7D.!!$R1 1947
10 TraesCS2B01G377400 chr7D 251055268 251055866 598 False 880 880 93.167 1 600 1 chr7D.!!$F2 599
11 TraesCS2B01G377400 chr7D 164951732 164952328 596 False 878 878 93.167 1 600 1 chr7D.!!$F1 599
12 TraesCS2B01G377400 chr3B 124500389 124502329 1940 True 2401 2401 89.139 601 2532 1 chr3B.!!$R1 1931
13 TraesCS2B01G377400 chr3B 124558237 124560191 1954 True 2361 2361 88.612 601 2545 1 chr3B.!!$R2 1944
14 TraesCS2B01G377400 chr3A 634657891 634659847 1956 True 2370 2370 88.629 593 2545 1 chr3A.!!$R1 1952
15 TraesCS2B01G377400 chr5D 353833687 353835367 1680 True 2311 2311 91.509 851 2536 1 chr5D.!!$R1 1685
16 TraesCS2B01G377400 chr5D 357074269 357075968 1699 True 1988 1988 87.861 601 2313 1 chr5D.!!$R2 1712
17 TraesCS2B01G377400 chr3D 80249123 80250769 1646 False 2098 2098 89.686 894 2545 1 chr3D.!!$F1 1651
18 TraesCS2B01G377400 chr3D 573731191 573732893 1702 False 1940 1940 87.349 597 2313 1 chr3D.!!$F3 1716
19 TraesCS2B01G377400 chr3D 476788755 476789353 598 False 878 878 93.155 3 600 1 chr3D.!!$F2 597
20 TraesCS2B01G377400 chr6D 329895067 329896761 1694 True 2034 2034 88.395 601 2313 1 chr6D.!!$R1 1712
21 TraesCS2B01G377400 chrUn 355013877 355015556 1679 False 1910 1910 87.224 601 2308 1 chrUn.!!$F1 1707
22 TraesCS2B01G377400 chr5B 139201330 139201929 599 False 915 915 94.167 1 600 1 chr5B.!!$F1 599
23 TraesCS2B01G377400 chr1B 467750314 467750911 597 False 902 902 93.833 1 600 1 chr1B.!!$F1 599
24 TraesCS2B01G377400 chr4D 146052369 146052964 595 False 887 887 93.478 3 600 1 chr4D.!!$F1 597
25 TraesCS2B01G377400 chr4B 495643346 495643943 597 True 883 883 93.311 3 600 1 chr4B.!!$R1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 174 0.035343 AGACCATCACTCGTCCTCGA 60.035 55.0 0.0 0.0 44.12 4.04 F
547 548 0.037590 TAAAACCACCGCCATGCTCT 59.962 50.0 0.0 0.0 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1317 1403 0.240678 TTTGTGGCAGCATACGCAAG 59.759 50.0 0.0 0.0 42.27 4.01 R
2422 2801 0.603707 CCAGAATCGTGTGGCAGTGT 60.604 55.0 0.0 0.0 30.12 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 1.003233 GGTGGAAGGGTGAGAGTGC 60.003 63.158 0.00 0.00 0.00 4.40
36 37 1.374758 GTGGAAGGGTGAGAGTGCG 60.375 63.158 0.00 0.00 0.00 5.34
37 38 1.837051 TGGAAGGGTGAGAGTGCGT 60.837 57.895 0.00 0.00 0.00 5.24
38 39 0.541063 TGGAAGGGTGAGAGTGCGTA 60.541 55.000 0.00 0.00 0.00 4.42
39 40 0.824759 GGAAGGGTGAGAGTGCGTAT 59.175 55.000 0.00 0.00 0.00 3.06
40 41 2.029623 GGAAGGGTGAGAGTGCGTATA 58.970 52.381 0.00 0.00 0.00 1.47
41 42 2.429610 GGAAGGGTGAGAGTGCGTATAA 59.570 50.000 0.00 0.00 0.00 0.98
42 43 3.069729 GGAAGGGTGAGAGTGCGTATAAT 59.930 47.826 0.00 0.00 0.00 1.28
43 44 4.299978 GAAGGGTGAGAGTGCGTATAATC 58.700 47.826 0.00 0.00 0.00 1.75
44 45 2.628657 AGGGTGAGAGTGCGTATAATCC 59.371 50.000 0.00 0.00 0.00 3.01
45 46 2.364324 GGGTGAGAGTGCGTATAATCCA 59.636 50.000 0.00 0.00 0.00 3.41
46 47 3.006967 GGGTGAGAGTGCGTATAATCCAT 59.993 47.826 0.00 0.00 0.00 3.41
47 48 3.990469 GGTGAGAGTGCGTATAATCCATG 59.010 47.826 0.00 0.00 0.00 3.66
48 49 3.990469 GTGAGAGTGCGTATAATCCATGG 59.010 47.826 4.97 4.97 0.00 3.66
49 50 3.895041 TGAGAGTGCGTATAATCCATGGA 59.105 43.478 18.88 18.88 0.00 3.41
50 51 4.238514 GAGAGTGCGTATAATCCATGGAC 58.761 47.826 18.99 3.14 0.00 4.02
51 52 3.898123 AGAGTGCGTATAATCCATGGACT 59.102 43.478 18.99 9.32 36.43 3.85
52 53 4.345257 AGAGTGCGTATAATCCATGGACTT 59.655 41.667 18.99 14.69 34.20 3.01
53 54 5.538813 AGAGTGCGTATAATCCATGGACTTA 59.461 40.000 18.99 16.32 34.20 2.24
54 55 6.041637 AGAGTGCGTATAATCCATGGACTTAA 59.958 38.462 18.99 2.87 34.20 1.85
55 56 5.989777 AGTGCGTATAATCCATGGACTTAAC 59.010 40.000 18.99 12.37 30.32 2.01
56 57 5.756347 GTGCGTATAATCCATGGACTTAACA 59.244 40.000 18.99 7.09 0.00 2.41
57 58 6.426937 GTGCGTATAATCCATGGACTTAACAT 59.573 38.462 18.99 6.69 0.00 2.71
58 59 6.995686 TGCGTATAATCCATGGACTTAACATT 59.004 34.615 18.99 8.22 0.00 2.71
59 60 8.151596 TGCGTATAATCCATGGACTTAACATTA 58.848 33.333 18.99 10.35 0.00 1.90
60 61 8.656849 GCGTATAATCCATGGACTTAACATTAG 58.343 37.037 18.99 3.22 0.00 1.73
61 62 9.706691 CGTATAATCCATGGACTTAACATTAGT 57.293 33.333 18.99 0.00 0.00 2.24
68 69 9.613428 TCCATGGACTTAACATTAGTCATAAAG 57.387 33.333 11.44 0.00 43.00 1.85
69 70 9.613428 CCATGGACTTAACATTAGTCATAAAGA 57.387 33.333 5.56 0.00 43.00 2.52
107 108 7.857734 TTGCAAAAATCTATTAGTCATCGGA 57.142 32.000 0.00 0.00 0.00 4.55
108 109 7.857734 TGCAAAAATCTATTAGTCATCGGAA 57.142 32.000 0.00 0.00 0.00 4.30
109 110 7.693952 TGCAAAAATCTATTAGTCATCGGAAC 58.306 34.615 0.00 0.00 0.00 3.62
110 111 7.335673 TGCAAAAATCTATTAGTCATCGGAACA 59.664 33.333 0.00 0.00 0.00 3.18
111 112 8.181573 GCAAAAATCTATTAGTCATCGGAACAA 58.818 33.333 0.00 0.00 0.00 2.83
114 115 9.449719 AAAATCTATTAGTCATCGGAACAAAGT 57.550 29.630 0.00 0.00 0.00 2.66
116 117 9.530633 AATCTATTAGTCATCGGAACAAAGTAC 57.469 33.333 0.00 0.00 0.00 2.73
117 118 8.289939 TCTATTAGTCATCGGAACAAAGTACT 57.710 34.615 0.00 0.00 0.00 2.73
118 119 9.399797 TCTATTAGTCATCGGAACAAAGTACTA 57.600 33.333 0.00 0.00 0.00 1.82
120 121 8.873215 ATTAGTCATCGGAACAAAGTACTATG 57.127 34.615 0.00 0.00 0.00 2.23
121 122 5.109903 AGTCATCGGAACAAAGTACTATGC 58.890 41.667 0.00 0.00 0.00 3.14
122 123 4.868171 GTCATCGGAACAAAGTACTATGCA 59.132 41.667 0.00 0.00 0.00 3.96
123 124 4.868171 TCATCGGAACAAAGTACTATGCAC 59.132 41.667 0.00 0.00 0.00 4.57
124 125 4.260139 TCGGAACAAAGTACTATGCACA 57.740 40.909 0.00 0.00 0.00 4.57
125 126 4.827692 TCGGAACAAAGTACTATGCACAT 58.172 39.130 0.00 0.00 0.00 3.21
126 127 4.629634 TCGGAACAAAGTACTATGCACATG 59.370 41.667 0.00 0.00 0.00 3.21
127 128 4.662145 GGAACAAAGTACTATGCACATGC 58.338 43.478 0.00 0.00 42.50 4.06
128 129 4.396166 GGAACAAAGTACTATGCACATGCT 59.604 41.667 5.31 0.00 42.66 3.79
129 130 5.447818 GGAACAAAGTACTATGCACATGCTC 60.448 44.000 5.31 0.00 42.66 4.26
130 131 3.941483 ACAAAGTACTATGCACATGCTCC 59.059 43.478 5.31 0.00 42.66 4.70
131 132 4.194640 CAAAGTACTATGCACATGCTCCT 58.805 43.478 5.31 0.00 42.66 3.69
132 133 5.104941 ACAAAGTACTATGCACATGCTCCTA 60.105 40.000 5.31 0.00 42.66 2.94
133 134 4.862902 AGTACTATGCACATGCTCCTAG 57.137 45.455 5.31 6.34 42.66 3.02
134 135 3.576118 AGTACTATGCACATGCTCCTAGG 59.424 47.826 0.82 0.82 42.66 3.02
135 136 1.696336 ACTATGCACATGCTCCTAGGG 59.304 52.381 9.46 0.44 42.66 3.53
136 137 1.002888 CTATGCACATGCTCCTAGGGG 59.997 57.143 9.46 6.61 42.66 4.79
137 138 1.713005 ATGCACATGCTCCTAGGGGG 61.713 60.000 11.65 4.51 42.66 5.40
138 139 2.072487 GCACATGCTCCTAGGGGGA 61.072 63.158 11.65 8.46 42.77 4.81
139 140 1.422161 GCACATGCTCCTAGGGGGAT 61.422 60.000 10.43 10.43 44.15 3.85
140 141 2.030027 CACATGCTCCTAGGGGGATA 57.970 55.000 16.38 0.00 44.15 2.59
141 142 1.905215 CACATGCTCCTAGGGGGATAG 59.095 57.143 16.38 12.47 44.15 2.08
142 143 1.795786 ACATGCTCCTAGGGGGATAGA 59.204 52.381 16.38 0.00 44.15 1.98
143 144 2.388563 ACATGCTCCTAGGGGGATAGAT 59.611 50.000 16.38 1.46 44.15 1.98
144 145 3.181390 ACATGCTCCTAGGGGGATAGATT 60.181 47.826 16.38 0.00 44.15 2.40
145 146 2.907892 TGCTCCTAGGGGGATAGATTG 58.092 52.381 11.65 0.00 44.15 2.67
146 147 2.192263 GCTCCTAGGGGGATAGATTGG 58.808 57.143 11.65 0.00 44.15 3.16
147 148 2.495572 GCTCCTAGGGGGATAGATTGGT 60.496 54.545 11.65 0.00 44.15 3.67
148 149 3.246021 GCTCCTAGGGGGATAGATTGGTA 60.246 52.174 11.65 0.00 44.15 3.25
149 150 4.615513 CTCCTAGGGGGATAGATTGGTAG 58.384 52.174 9.46 0.00 44.15 3.18
150 151 3.340049 TCCTAGGGGGATAGATTGGTAGG 59.660 52.174 9.46 0.00 39.58 3.18
151 152 3.340049 CCTAGGGGGATAGATTGGTAGGA 59.660 52.174 0.00 0.00 37.23 2.94
152 153 4.202901 CCTAGGGGGATAGATTGGTAGGAA 60.203 50.000 0.00 0.00 37.23 3.36
153 154 4.311208 AGGGGGATAGATTGGTAGGAAA 57.689 45.455 0.00 0.00 0.00 3.13
154 155 4.652628 AGGGGGATAGATTGGTAGGAAAA 58.347 43.478 0.00 0.00 0.00 2.29
155 156 4.665483 AGGGGGATAGATTGGTAGGAAAAG 59.335 45.833 0.00 0.00 0.00 2.27
156 157 4.663592 GGGGGATAGATTGGTAGGAAAAGA 59.336 45.833 0.00 0.00 0.00 2.52
157 158 5.456330 GGGGGATAGATTGGTAGGAAAAGAC 60.456 48.000 0.00 0.00 0.00 3.01
158 159 5.456330 GGGGATAGATTGGTAGGAAAAGACC 60.456 48.000 0.00 0.00 36.17 3.85
159 160 5.132144 GGGATAGATTGGTAGGAAAAGACCA 59.868 44.000 0.00 0.00 44.08 4.02
160 161 6.183361 GGGATAGATTGGTAGGAAAAGACCAT 60.183 42.308 0.00 0.00 45.09 3.55
161 162 6.937465 GGATAGATTGGTAGGAAAAGACCATC 59.063 42.308 0.00 0.00 45.09 3.51
162 163 5.779241 AGATTGGTAGGAAAAGACCATCA 57.221 39.130 0.00 0.00 45.09 3.07
163 164 5.501156 AGATTGGTAGGAAAAGACCATCAC 58.499 41.667 0.00 0.00 45.09 3.06
164 165 4.993705 TTGGTAGGAAAAGACCATCACT 57.006 40.909 0.00 0.00 45.09 3.41
165 166 4.553330 TGGTAGGAAAAGACCATCACTC 57.447 45.455 0.00 0.00 40.87 3.51
166 167 3.056107 TGGTAGGAAAAGACCATCACTCG 60.056 47.826 0.00 0.00 40.87 4.18
167 168 3.056035 GGTAGGAAAAGACCATCACTCGT 60.056 47.826 0.00 0.00 35.65 4.18
168 169 3.320673 AGGAAAAGACCATCACTCGTC 57.679 47.619 0.00 0.00 0.00 4.20
169 170 2.028020 AGGAAAAGACCATCACTCGTCC 60.028 50.000 0.00 0.00 0.00 4.79
170 171 2.028020 GGAAAAGACCATCACTCGTCCT 60.028 50.000 0.00 0.00 0.00 3.85
171 172 3.254892 GAAAAGACCATCACTCGTCCTC 58.745 50.000 0.00 0.00 0.00 3.71
172 173 0.811915 AAGACCATCACTCGTCCTCG 59.188 55.000 0.00 0.00 38.55 4.63
173 174 0.035343 AGACCATCACTCGTCCTCGA 60.035 55.000 0.00 0.00 44.12 4.04
174 175 0.099082 GACCATCACTCGTCCTCGAC 59.901 60.000 0.00 0.00 41.35 4.20
175 176 1.313812 ACCATCACTCGTCCTCGACC 61.314 60.000 0.00 0.00 41.35 4.79
176 177 1.313091 CCATCACTCGTCCTCGACCA 61.313 60.000 0.00 0.00 41.35 4.02
177 178 0.179161 CATCACTCGTCCTCGACCAC 60.179 60.000 0.00 0.00 41.35 4.16
178 179 1.313812 ATCACTCGTCCTCGACCACC 61.314 60.000 0.00 0.00 41.35 4.61
179 180 2.114625 ACTCGTCCTCGACCACCA 59.885 61.111 0.00 0.00 41.35 4.17
180 181 2.266627 ACTCGTCCTCGACCACCAC 61.267 63.158 0.00 0.00 41.35 4.16
181 182 1.972223 CTCGTCCTCGACCACCACT 60.972 63.158 0.00 0.00 41.35 4.00
182 183 1.924320 CTCGTCCTCGACCACCACTC 61.924 65.000 0.00 0.00 41.35 3.51
183 184 2.265904 CGTCCTCGACCACCACTCA 61.266 63.158 0.00 0.00 39.71 3.41
184 185 1.595993 CGTCCTCGACCACCACTCAT 61.596 60.000 0.00 0.00 39.71 2.90
185 186 1.471119 GTCCTCGACCACCACTCATA 58.529 55.000 0.00 0.00 0.00 2.15
186 187 1.822990 GTCCTCGACCACCACTCATAA 59.177 52.381 0.00 0.00 0.00 1.90
187 188 2.100197 TCCTCGACCACCACTCATAAG 58.900 52.381 0.00 0.00 0.00 1.73
188 189 1.137086 CCTCGACCACCACTCATAAGG 59.863 57.143 0.00 0.00 0.00 2.69
189 190 2.100197 CTCGACCACCACTCATAAGGA 58.900 52.381 0.00 0.00 0.00 3.36
190 191 2.496070 CTCGACCACCACTCATAAGGAA 59.504 50.000 0.00 0.00 0.00 3.36
191 192 2.496070 TCGACCACCACTCATAAGGAAG 59.504 50.000 0.00 0.00 0.00 3.46
192 193 2.496070 CGACCACCACTCATAAGGAAGA 59.504 50.000 0.00 0.00 0.00 2.87
193 194 3.676324 CGACCACCACTCATAAGGAAGAC 60.676 52.174 0.00 0.00 0.00 3.01
194 195 3.248024 ACCACCACTCATAAGGAAGACA 58.752 45.455 0.00 0.00 0.00 3.41
195 196 3.650942 ACCACCACTCATAAGGAAGACAA 59.349 43.478 0.00 0.00 0.00 3.18
196 197 4.289672 ACCACCACTCATAAGGAAGACAAT 59.710 41.667 0.00 0.00 0.00 2.71
197 198 4.878397 CCACCACTCATAAGGAAGACAATC 59.122 45.833 0.00 0.00 0.00 2.67
198 199 5.491070 CACCACTCATAAGGAAGACAATCA 58.509 41.667 0.00 0.00 0.00 2.57
199 200 5.939883 CACCACTCATAAGGAAGACAATCAA 59.060 40.000 0.00 0.00 0.00 2.57
200 201 6.600822 CACCACTCATAAGGAAGACAATCAAT 59.399 38.462 0.00 0.00 0.00 2.57
201 202 7.770433 CACCACTCATAAGGAAGACAATCAATA 59.230 37.037 0.00 0.00 0.00 1.90
202 203 8.328758 ACCACTCATAAGGAAGACAATCAATAA 58.671 33.333 0.00 0.00 0.00 1.40
203 204 9.177608 CCACTCATAAGGAAGACAATCAATAAA 57.822 33.333 0.00 0.00 0.00 1.40
213 214 9.837525 GGAAGACAATCAATAAATATCTCATGC 57.162 33.333 0.00 0.00 0.00 4.06
216 217 9.228949 AGACAATCAATAAATATCTCATGCTCC 57.771 33.333 0.00 0.00 0.00 4.70
217 218 8.929260 ACAATCAATAAATATCTCATGCTCCA 57.071 30.769 0.00 0.00 0.00 3.86
218 219 9.358406 ACAATCAATAAATATCTCATGCTCCAA 57.642 29.630 0.00 0.00 0.00 3.53
219 220 9.622004 CAATCAATAAATATCTCATGCTCCAAC 57.378 33.333 0.00 0.00 0.00 3.77
220 221 9.584008 AATCAATAAATATCTCATGCTCCAACT 57.416 29.630 0.00 0.00 0.00 3.16
221 222 8.985315 TCAATAAATATCTCATGCTCCAACTT 57.015 30.769 0.00 0.00 0.00 2.66
228 229 9.851686 AATATCTCATGCTCCAACTTAATTACA 57.148 29.630 0.00 0.00 0.00 2.41
231 232 9.851686 ATCTCATGCTCCAACTTAATTACATAA 57.148 29.630 0.00 0.00 0.00 1.90
232 233 9.109393 TCTCATGCTCCAACTTAATTACATAAC 57.891 33.333 0.00 0.00 0.00 1.89
233 234 7.915508 TCATGCTCCAACTTAATTACATAACG 58.084 34.615 0.00 0.00 0.00 3.18
234 235 6.671614 TGCTCCAACTTAATTACATAACGG 57.328 37.500 0.00 0.00 0.00 4.44
235 236 6.174760 TGCTCCAACTTAATTACATAACGGT 58.825 36.000 0.00 0.00 0.00 4.83
236 237 6.655848 TGCTCCAACTTAATTACATAACGGTT 59.344 34.615 0.00 0.00 0.00 4.44
237 238 7.148373 TGCTCCAACTTAATTACATAACGGTTC 60.148 37.037 0.00 0.00 0.00 3.62
238 239 7.148373 GCTCCAACTTAATTACATAACGGTTCA 60.148 37.037 0.00 0.00 0.00 3.18
239 240 8.031848 TCCAACTTAATTACATAACGGTTCAC 57.968 34.615 0.00 0.00 0.00 3.18
240 241 7.119553 TCCAACTTAATTACATAACGGTTCACC 59.880 37.037 0.00 0.00 0.00 4.02
241 242 7.094720 CCAACTTAATTACATAACGGTTCACCA 60.095 37.037 0.00 0.00 35.14 4.17
242 243 8.455682 CAACTTAATTACATAACGGTTCACCAT 58.544 33.333 0.00 0.00 35.14 3.55
243 244 9.669887 AACTTAATTACATAACGGTTCACCATA 57.330 29.630 0.00 0.00 35.14 2.74
244 245 9.669887 ACTTAATTACATAACGGTTCACCATAA 57.330 29.630 0.00 0.00 35.14 1.90
246 247 9.669887 TTAATTACATAACGGTTCACCATAAGT 57.330 29.630 0.00 0.00 35.14 2.24
248 249 3.687698 ACATAACGGTTCACCATAAGTGC 59.312 43.478 0.00 0.00 46.81 4.40
249 250 2.264005 AACGGTTCACCATAAGTGCA 57.736 45.000 0.00 0.00 46.81 4.57
250 251 2.489938 ACGGTTCACCATAAGTGCAT 57.510 45.000 0.00 0.00 46.81 3.96
251 252 2.083774 ACGGTTCACCATAAGTGCATG 58.916 47.619 0.00 0.00 46.81 4.06
252 253 1.202177 CGGTTCACCATAAGTGCATGC 60.202 52.381 11.82 11.82 46.81 4.06
253 254 2.094675 GGTTCACCATAAGTGCATGCT 58.905 47.619 20.33 0.40 46.81 3.79
254 255 3.278574 GGTTCACCATAAGTGCATGCTA 58.721 45.455 20.33 3.11 46.81 3.49
255 256 3.885297 GGTTCACCATAAGTGCATGCTAT 59.115 43.478 20.33 5.65 46.81 2.97
256 257 4.261322 GGTTCACCATAAGTGCATGCTATG 60.261 45.833 20.33 17.26 46.81 2.23
257 258 3.479489 TCACCATAAGTGCATGCTATGG 58.521 45.455 29.44 29.44 46.81 2.74
258 259 2.555325 CACCATAAGTGCATGCTATGGG 59.445 50.000 32.01 22.64 41.34 4.00
259 260 2.442878 ACCATAAGTGCATGCTATGGGA 59.557 45.455 32.01 12.61 41.34 4.37
260 261 3.117550 ACCATAAGTGCATGCTATGGGAA 60.118 43.478 32.01 8.20 41.34 3.97
261 262 4.084287 CCATAAGTGCATGCTATGGGAAT 58.916 43.478 26.06 8.44 35.31 3.01
262 263 4.157289 CCATAAGTGCATGCTATGGGAATC 59.843 45.833 26.06 6.49 35.31 2.52
263 264 3.301794 AAGTGCATGCTATGGGAATCA 57.698 42.857 20.33 0.00 0.00 2.57
264 265 2.579873 AGTGCATGCTATGGGAATCAC 58.420 47.619 20.33 4.24 0.00 3.06
265 266 2.092267 AGTGCATGCTATGGGAATCACA 60.092 45.455 20.33 0.00 0.00 3.58
266 267 2.689471 GTGCATGCTATGGGAATCACAA 59.311 45.455 20.33 0.00 0.00 3.33
267 268 3.130869 GTGCATGCTATGGGAATCACAAA 59.869 43.478 20.33 0.00 0.00 2.83
268 269 3.130869 TGCATGCTATGGGAATCACAAAC 59.869 43.478 20.33 0.00 0.00 2.93
269 270 3.491447 GCATGCTATGGGAATCACAAACC 60.491 47.826 11.37 0.00 0.00 3.27
270 271 3.737559 TGCTATGGGAATCACAAACCT 57.262 42.857 0.00 0.00 0.00 3.50
271 272 3.620488 TGCTATGGGAATCACAAACCTC 58.380 45.455 0.00 0.00 0.00 3.85
272 273 3.010027 TGCTATGGGAATCACAAACCTCA 59.990 43.478 0.00 0.00 0.00 3.86
273 274 4.016444 GCTATGGGAATCACAAACCTCAA 58.984 43.478 0.00 0.00 0.00 3.02
274 275 4.142381 GCTATGGGAATCACAAACCTCAAC 60.142 45.833 0.00 0.00 0.00 3.18
275 276 3.304911 TGGGAATCACAAACCTCAACA 57.695 42.857 0.00 0.00 0.00 3.33
276 277 2.955660 TGGGAATCACAAACCTCAACAC 59.044 45.455 0.00 0.00 0.00 3.32
277 278 2.955660 GGGAATCACAAACCTCAACACA 59.044 45.455 0.00 0.00 0.00 3.72
278 279 3.383185 GGGAATCACAAACCTCAACACAA 59.617 43.478 0.00 0.00 0.00 3.33
279 280 4.499696 GGGAATCACAAACCTCAACACAAG 60.500 45.833 0.00 0.00 0.00 3.16
280 281 4.097892 GGAATCACAAACCTCAACACAAGT 59.902 41.667 0.00 0.00 0.00 3.16
281 282 5.298276 GGAATCACAAACCTCAACACAAGTA 59.702 40.000 0.00 0.00 0.00 2.24
282 283 6.016276 GGAATCACAAACCTCAACACAAGTAT 60.016 38.462 0.00 0.00 0.00 2.12
283 284 6.560253 ATCACAAACCTCAACACAAGTATC 57.440 37.500 0.00 0.00 0.00 2.24
284 285 5.680619 TCACAAACCTCAACACAAGTATCT 58.319 37.500 0.00 0.00 0.00 1.98
285 286 5.758296 TCACAAACCTCAACACAAGTATCTC 59.242 40.000 0.00 0.00 0.00 2.75
286 287 5.760253 CACAAACCTCAACACAAGTATCTCT 59.240 40.000 0.00 0.00 0.00 3.10
287 288 5.992217 ACAAACCTCAACACAAGTATCTCTC 59.008 40.000 0.00 0.00 0.00 3.20
288 289 5.808366 AACCTCAACACAAGTATCTCTCA 57.192 39.130 0.00 0.00 0.00 3.27
289 290 5.808366 ACCTCAACACAAGTATCTCTCAA 57.192 39.130 0.00 0.00 0.00 3.02
290 291 6.174720 ACCTCAACACAAGTATCTCTCAAA 57.825 37.500 0.00 0.00 0.00 2.69
291 292 6.773638 ACCTCAACACAAGTATCTCTCAAAT 58.226 36.000 0.00 0.00 0.00 2.32
292 293 7.227156 ACCTCAACACAAGTATCTCTCAAATT 58.773 34.615 0.00 0.00 0.00 1.82
293 294 7.389053 ACCTCAACACAAGTATCTCTCAAATTC 59.611 37.037 0.00 0.00 0.00 2.17
294 295 7.388776 CCTCAACACAAGTATCTCTCAAATTCA 59.611 37.037 0.00 0.00 0.00 2.57
295 296 8.853077 TCAACACAAGTATCTCTCAAATTCAT 57.147 30.769 0.00 0.00 0.00 2.57
296 297 8.724229 TCAACACAAGTATCTCTCAAATTCATG 58.276 33.333 0.00 0.00 0.00 3.07
297 298 8.724229 CAACACAAGTATCTCTCAAATTCATGA 58.276 33.333 0.00 0.00 0.00 3.07
298 299 9.458727 AACACAAGTATCTCTCAAATTCATGAT 57.541 29.630 0.00 0.00 0.00 2.45
299 300 9.458727 ACACAAGTATCTCTCAAATTCATGATT 57.541 29.630 0.00 0.00 0.00 2.57
316 317 9.703892 ATTCATGATTACTTACTAGCATGACTC 57.296 33.333 0.00 0.00 41.01 3.36
317 318 8.470657 TCATGATTACTTACTAGCATGACTCT 57.529 34.615 0.00 0.00 37.71 3.24
318 319 9.574516 TCATGATTACTTACTAGCATGACTCTA 57.425 33.333 0.00 0.00 37.71 2.43
319 320 9.838975 CATGATTACTTACTAGCATGACTCTAG 57.161 37.037 0.00 0.18 39.43 2.43
320 321 8.982091 TGATTACTTACTAGCATGACTCTAGT 57.018 34.615 13.77 13.77 46.01 2.57
325 326 8.385898 ACTTACTAGCATGACTCTAGTATCAC 57.614 38.462 15.31 0.00 44.44 3.06
326 327 7.446013 ACTTACTAGCATGACTCTAGTATCACC 59.554 40.741 15.31 0.00 44.44 4.02
327 328 5.696030 ACTAGCATGACTCTAGTATCACCA 58.304 41.667 9.09 0.00 43.40 4.17
328 329 6.310941 ACTAGCATGACTCTAGTATCACCAT 58.689 40.000 9.09 0.00 43.40 3.55
329 330 5.720371 AGCATGACTCTAGTATCACCATC 57.280 43.478 0.00 0.00 0.00 3.51
330 331 5.392995 AGCATGACTCTAGTATCACCATCT 58.607 41.667 0.00 0.00 0.00 2.90
331 332 5.837979 AGCATGACTCTAGTATCACCATCTT 59.162 40.000 0.00 0.00 0.00 2.40
332 333 6.015519 AGCATGACTCTAGTATCACCATCTTC 60.016 42.308 0.00 0.00 0.00 2.87
333 334 6.239148 GCATGACTCTAGTATCACCATCTTCA 60.239 42.308 0.00 0.00 0.00 3.02
334 335 7.525194 GCATGACTCTAGTATCACCATCTTCAT 60.525 40.741 0.00 0.00 0.00 2.57
335 336 9.018582 CATGACTCTAGTATCACCATCTTCATA 57.981 37.037 0.00 0.00 0.00 2.15
336 337 9.766754 ATGACTCTAGTATCACCATCTTCATAT 57.233 33.333 1.52 0.00 0.00 1.78
337 338 9.237187 TGACTCTAGTATCACCATCTTCATATC 57.763 37.037 0.00 0.00 0.00 1.63
338 339 9.461312 GACTCTAGTATCACCATCTTCATATCT 57.539 37.037 0.00 0.00 0.00 1.98
339 340 9.821240 ACTCTAGTATCACCATCTTCATATCTT 57.179 33.333 0.00 0.00 0.00 2.40
341 342 9.813826 TCTAGTATCACCATCTTCATATCTTGA 57.186 33.333 0.00 0.00 0.00 3.02
344 345 9.553064 AGTATCACCATCTTCATATCTTGAAAC 57.447 33.333 0.00 0.00 43.64 2.78
345 346 9.330063 GTATCACCATCTTCATATCTTGAAACA 57.670 33.333 0.00 0.00 43.64 2.83
346 347 8.812513 ATCACCATCTTCATATCTTGAAACAA 57.187 30.769 0.00 0.00 43.64 2.83
347 348 8.812513 TCACCATCTTCATATCTTGAAACAAT 57.187 30.769 0.00 0.00 43.64 2.71
348 349 8.896744 TCACCATCTTCATATCTTGAAACAATC 58.103 33.333 0.00 0.00 43.64 2.67
349 350 8.680001 CACCATCTTCATATCTTGAAACAATCA 58.320 33.333 0.00 0.00 43.64 2.57
350 351 9.417561 ACCATCTTCATATCTTGAAACAATCAT 57.582 29.630 0.00 0.00 43.64 2.45
362 363 9.912634 TCTTGAAACAATCATAAGGAATCAAAC 57.087 29.630 0.00 0.00 38.03 2.93
363 364 9.918630 CTTGAAACAATCATAAGGAATCAAACT 57.081 29.630 0.00 0.00 38.03 2.66
365 366 9.912634 TGAAACAATCATAAGGAATCAAACTTC 57.087 29.630 0.00 0.00 31.50 3.01
368 369 8.868522 ACAATCATAAGGAATCAAACTTCTCA 57.131 30.769 0.00 0.00 0.00 3.27
369 370 9.471702 ACAATCATAAGGAATCAAACTTCTCAT 57.528 29.630 0.00 0.00 0.00 2.90
377 378 8.324191 AGGAATCAAACTTCTCATAGTATCCA 57.676 34.615 0.00 0.00 0.00 3.41
378 379 8.772250 AGGAATCAAACTTCTCATAGTATCCAA 58.228 33.333 0.00 0.00 0.00 3.53
379 380 9.566432 GGAATCAAACTTCTCATAGTATCCAAT 57.434 33.333 0.00 0.00 0.00 3.16
381 382 7.792374 TCAAACTTCTCATAGTATCCAATGC 57.208 36.000 0.00 0.00 0.00 3.56
382 383 7.337938 TCAAACTTCTCATAGTATCCAATGCA 58.662 34.615 0.00 0.00 0.00 3.96
383 384 7.280876 TCAAACTTCTCATAGTATCCAATGCAC 59.719 37.037 0.00 0.00 0.00 4.57
384 385 6.491714 ACTTCTCATAGTATCCAATGCACT 57.508 37.500 0.00 0.00 0.00 4.40
385 386 6.893583 ACTTCTCATAGTATCCAATGCACTT 58.106 36.000 0.00 0.00 0.00 3.16
386 387 7.341805 ACTTCTCATAGTATCCAATGCACTTT 58.658 34.615 0.00 0.00 0.00 2.66
387 388 8.486210 ACTTCTCATAGTATCCAATGCACTTTA 58.514 33.333 0.00 0.00 0.00 1.85
388 389 9.499479 CTTCTCATAGTATCCAATGCACTTTAT 57.501 33.333 0.00 0.00 0.00 1.40
396 397 9.632638 AGTATCCAATGCACTTTATATGAAAGT 57.367 29.630 0.00 2.58 40.80 2.66
400 401 9.995003 TCCAATGCACTTTATATGAAAGTTTTT 57.005 25.926 5.15 0.00 38.32 1.94
430 431 5.982391 TCCCTCTTGGATTCCTATCATACT 58.018 41.667 3.95 0.00 38.61 2.12
431 432 7.116089 TCCCTCTTGGATTCCTATCATACTA 57.884 40.000 3.95 0.00 38.61 1.82
432 433 7.185565 TCCCTCTTGGATTCCTATCATACTAG 58.814 42.308 3.95 0.00 38.61 2.57
433 434 6.382570 CCCTCTTGGATTCCTATCATACTAGG 59.617 46.154 3.95 0.00 36.91 3.02
434 435 7.185565 CCTCTTGGATTCCTATCATACTAGGA 58.814 42.308 3.95 0.00 39.64 2.94
435 436 7.123547 CCTCTTGGATTCCTATCATACTAGGAC 59.876 44.444 3.95 0.00 40.39 3.85
436 437 7.770662 TCTTGGATTCCTATCATACTAGGACT 58.229 38.462 3.95 0.00 45.50 3.85
437 438 8.901841 TCTTGGATTCCTATCATACTAGGACTA 58.098 37.037 3.95 0.00 45.50 2.59
438 439 9.535170 CTTGGATTCCTATCATACTAGGACTAA 57.465 37.037 3.95 0.00 45.50 2.24
439 440 9.892444 TTGGATTCCTATCATACTAGGACTAAA 57.108 33.333 3.95 0.00 45.50 1.85
454 455 9.969001 ACTAGGACTAAATTTATAACCAAAGCA 57.031 29.630 0.00 0.00 0.00 3.91
465 466 8.485976 TTTATAACCAAAGCAAATTACCATGC 57.514 30.769 0.00 0.00 42.87 4.06
476 477 7.281991 GCAAATTACCATGCTGTCTAAAAAG 57.718 36.000 0.00 0.00 39.46 2.27
477 478 7.090173 GCAAATTACCATGCTGTCTAAAAAGA 58.910 34.615 0.00 0.00 39.46 2.52
478 479 7.062255 GCAAATTACCATGCTGTCTAAAAAGAC 59.938 37.037 0.00 0.00 39.46 3.01
479 480 8.299570 CAAATTACCATGCTGTCTAAAAAGACT 58.700 33.333 7.04 0.00 39.41 3.24
480 481 7.617041 ATTACCATGCTGTCTAAAAAGACTC 57.383 36.000 7.04 0.64 39.41 3.36
481 482 5.234466 ACCATGCTGTCTAAAAAGACTCT 57.766 39.130 7.04 0.00 39.41 3.24
482 483 5.241662 ACCATGCTGTCTAAAAAGACTCTC 58.758 41.667 7.04 0.00 39.41 3.20
483 484 5.221722 ACCATGCTGTCTAAAAAGACTCTCA 60.222 40.000 7.04 3.22 39.41 3.27
484 485 5.702670 CCATGCTGTCTAAAAAGACTCTCAA 59.297 40.000 7.04 0.00 39.41 3.02
485 486 6.205464 CCATGCTGTCTAAAAAGACTCTCAAA 59.795 38.462 7.04 0.00 39.41 2.69
486 487 7.255242 CCATGCTGTCTAAAAAGACTCTCAAAA 60.255 37.037 7.04 0.00 39.41 2.44
487 488 7.807977 TGCTGTCTAAAAAGACTCTCAAAAT 57.192 32.000 7.04 0.00 39.41 1.82
488 489 8.902540 TGCTGTCTAAAAAGACTCTCAAAATA 57.097 30.769 7.04 0.00 39.41 1.40
489 490 9.337396 TGCTGTCTAAAAAGACTCTCAAAATAA 57.663 29.630 7.04 0.00 39.41 1.40
514 515 9.624373 AATATAAGTGAAGCATGAGAGTTCAAT 57.376 29.630 0.00 0.00 36.78 2.57
517 518 7.934855 AAGTGAAGCATGAGAGTTCAATAAT 57.065 32.000 0.00 0.00 36.78 1.28
518 519 7.934855 AGTGAAGCATGAGAGTTCAATAATT 57.065 32.000 0.00 0.00 36.78 1.40
519 520 8.345724 AGTGAAGCATGAGAGTTCAATAATTT 57.654 30.769 0.00 0.00 36.78 1.82
520 521 8.457261 AGTGAAGCATGAGAGTTCAATAATTTC 58.543 33.333 0.00 0.00 36.78 2.17
521 522 8.457261 GTGAAGCATGAGAGTTCAATAATTTCT 58.543 33.333 0.00 0.00 36.78 2.52
522 523 9.671279 TGAAGCATGAGAGTTCAATAATTTCTA 57.329 29.630 0.00 0.00 36.78 2.10
540 541 8.936070 AATTTCTATAAAATAAAACCACCGCC 57.064 30.769 0.00 0.00 0.00 6.13
541 542 7.463961 TTTCTATAAAATAAAACCACCGCCA 57.536 32.000 0.00 0.00 0.00 5.69
542 543 7.648039 TTCTATAAAATAAAACCACCGCCAT 57.352 32.000 0.00 0.00 0.00 4.40
543 544 7.033530 TCTATAAAATAAAACCACCGCCATG 57.966 36.000 0.00 0.00 0.00 3.66
544 545 2.378445 AAATAAAACCACCGCCATGC 57.622 45.000 0.00 0.00 0.00 4.06
545 546 1.555967 AATAAAACCACCGCCATGCT 58.444 45.000 0.00 0.00 0.00 3.79
546 547 1.102978 ATAAAACCACCGCCATGCTC 58.897 50.000 0.00 0.00 0.00 4.26
547 548 0.037590 TAAAACCACCGCCATGCTCT 59.962 50.000 0.00 0.00 0.00 4.09
548 549 0.037590 AAAACCACCGCCATGCTCTA 59.962 50.000 0.00 0.00 0.00 2.43
549 550 0.037590 AAACCACCGCCATGCTCTAA 59.962 50.000 0.00 0.00 0.00 2.10
550 551 0.037590 AACCACCGCCATGCTCTAAA 59.962 50.000 0.00 0.00 0.00 1.85
551 552 0.037590 ACCACCGCCATGCTCTAAAA 59.962 50.000 0.00 0.00 0.00 1.52
552 553 1.340991 ACCACCGCCATGCTCTAAAAT 60.341 47.619 0.00 0.00 0.00 1.82
553 554 1.066002 CCACCGCCATGCTCTAAAATG 59.934 52.381 0.00 0.00 0.00 2.32
554 555 2.016318 CACCGCCATGCTCTAAAATGA 58.984 47.619 0.00 0.00 0.00 2.57
555 556 2.620115 CACCGCCATGCTCTAAAATGAT 59.380 45.455 0.00 0.00 0.00 2.45
556 557 3.814842 CACCGCCATGCTCTAAAATGATA 59.185 43.478 0.00 0.00 0.00 2.15
557 558 4.456911 CACCGCCATGCTCTAAAATGATAT 59.543 41.667 0.00 0.00 0.00 1.63
558 559 5.643348 CACCGCCATGCTCTAAAATGATATA 59.357 40.000 0.00 0.00 0.00 0.86
559 560 6.149308 CACCGCCATGCTCTAAAATGATATAA 59.851 38.462 0.00 0.00 0.00 0.98
560 561 6.372659 ACCGCCATGCTCTAAAATGATATAAG 59.627 38.462 0.00 0.00 0.00 1.73
561 562 6.372659 CCGCCATGCTCTAAAATGATATAAGT 59.627 38.462 0.00 0.00 0.00 2.24
562 563 7.239271 CGCCATGCTCTAAAATGATATAAGTG 58.761 38.462 0.00 0.00 0.00 3.16
563 564 7.118245 CGCCATGCTCTAAAATGATATAAGTGA 59.882 37.037 0.00 0.00 0.00 3.41
564 565 8.786898 GCCATGCTCTAAAATGATATAAGTGAA 58.213 33.333 0.00 0.00 0.00 3.18
566 567 9.823098 CATGCTCTAAAATGATATAAGTGAAGC 57.177 33.333 0.00 0.00 0.00 3.86
567 568 8.962884 TGCTCTAAAATGATATAAGTGAAGCA 57.037 30.769 0.00 0.00 0.00 3.91
568 569 9.049523 TGCTCTAAAATGATATAAGTGAAGCAG 57.950 33.333 0.00 0.00 0.00 4.24
569 570 9.050601 GCTCTAAAATGATATAAGTGAAGCAGT 57.949 33.333 0.00 0.00 0.00 4.40
574 575 8.600449 AAATGATATAAGTGAAGCAGTAGAGC 57.400 34.615 0.00 0.00 0.00 4.09
575 576 6.715347 TGATATAAGTGAAGCAGTAGAGCA 57.285 37.500 0.00 0.00 36.85 4.26
576 577 7.112452 TGATATAAGTGAAGCAGTAGAGCAA 57.888 36.000 0.00 0.00 36.85 3.91
577 578 7.555965 TGATATAAGTGAAGCAGTAGAGCAAA 58.444 34.615 0.00 0.00 36.85 3.68
578 579 8.040727 TGATATAAGTGAAGCAGTAGAGCAAAA 58.959 33.333 0.00 0.00 36.85 2.44
579 580 8.970859 ATATAAGTGAAGCAGTAGAGCAAAAT 57.029 30.769 0.00 0.00 36.85 1.82
580 581 7.693969 ATAAGTGAAGCAGTAGAGCAAAATT 57.306 32.000 0.00 0.00 36.85 1.82
581 582 5.368256 AGTGAAGCAGTAGAGCAAAATTG 57.632 39.130 0.00 0.00 36.85 2.32
623 624 4.037565 GGGTTAATTATCCTTTTGCCCTCG 59.962 45.833 11.51 0.00 0.00 4.63
652 653 2.224354 CCATTTGCTCAGTTTTGCCCTT 60.224 45.455 0.00 0.00 0.00 3.95
660 661 0.958822 AGTTTTGCCCTTAGTTGCGG 59.041 50.000 0.00 0.00 0.00 5.69
709 713 1.278637 GCACCAACTCGTTTCGTGG 59.721 57.895 8.17 0.00 0.00 4.94
725 729 1.026718 GTGGAAACTGCCATCTCCGG 61.027 60.000 0.00 0.00 40.68 5.14
745 749 3.686016 GGCAGGATAACCTTTTGACTCA 58.314 45.455 0.00 0.00 45.36 3.41
753 757 4.388577 AACCTTTTGACTCAGCCCTTAT 57.611 40.909 0.00 0.00 0.00 1.73
866 916 2.201921 ATAAGCGGGCGATAGAGAGA 57.798 50.000 0.00 0.00 39.76 3.10
937 1022 0.315251 CCACAACGACAGAGAGAGCA 59.685 55.000 0.00 0.00 0.00 4.26
964 1049 1.559682 GGAAGATAGTTGTGGAGGGCA 59.440 52.381 0.00 0.00 0.00 5.36
981 1066 0.388649 GCACGACGGTGTTGAGATCT 60.389 55.000 0.00 0.00 46.13 2.75
1019 1104 2.909006 TCATGTCTTCTTCAAGCTCCCT 59.091 45.455 0.00 0.00 0.00 4.20
1087 1172 3.612247 ATCTGTCTGTGGTGCCGGC 62.612 63.158 22.73 22.73 0.00 6.13
1120 1205 0.602905 GAGGGTTTCTCACACACCGG 60.603 60.000 0.00 0.00 42.02 5.28
1174 1259 2.959030 GAGAATGGGGTAAGAATTGGGC 59.041 50.000 0.00 0.00 0.00 5.36
1218 1304 3.631250 GGGATCTTTGAGCAATGGGTTA 58.369 45.455 0.00 0.00 0.00 2.85
1227 1313 6.418057 TTGAGCAATGGGTTAATCTGTTTT 57.582 33.333 0.00 0.00 0.00 2.43
1241 1327 3.286353 TCTGTTTTGTGTTCATGCAGGA 58.714 40.909 0.00 0.00 0.00 3.86
1261 1347 5.302823 CAGGAGAAATGTTTCTTCCTTTGGT 59.697 40.000 16.78 0.00 46.84 3.67
1264 1350 6.183360 GGAGAAATGTTTCTTCCTTTGGTTCA 60.183 38.462 9.20 0.00 46.84 3.18
1266 1352 7.041721 AGAAATGTTTCTTCCTTTGGTTCAAC 58.958 34.615 2.25 0.00 44.70 3.18
1267 1353 5.930837 ATGTTTCTTCCTTTGGTTCAACA 57.069 34.783 0.00 0.00 0.00 3.33
1487 1771 4.349342 ACCCATTTGCAATTACTTTTGGGA 59.651 37.500 21.16 0.00 44.36 4.37
1559 1845 6.661304 AAGGCATGAATTATGGAGGAATTC 57.339 37.500 0.00 0.00 41.63 2.17
1606 1951 9.535878 GAAATTCACCTTGTTTAAATGTTGGTA 57.464 29.630 0.00 0.00 0.00 3.25
1759 2117 0.537371 AAAAGGTTCCTCTGTGGGCG 60.537 55.000 0.00 0.00 36.20 6.13
1802 2160 2.141535 GTCAGCTAGACTAATGGGCG 57.858 55.000 0.00 0.00 44.09 6.13
1807 2165 3.318275 CAGCTAGACTAATGGGCGAACTA 59.682 47.826 0.00 0.00 0.00 2.24
1852 2210 2.686915 GTGGGCAAATGAGATCTCTTGG 59.313 50.000 22.95 13.04 0.00 3.61
1862 2222 7.693969 AATGAGATCTCTTGGGTGTTTTTAG 57.306 36.000 22.95 0.00 0.00 1.85
1875 2235 6.211785 TGGGTGTTTTTAGGTTTTCTGTTCTT 59.788 34.615 0.00 0.00 0.00 2.52
1965 2326 6.478512 TCCAGAGCCAAACAATTAAGTTTT 57.521 33.333 0.00 0.00 39.55 2.43
2131 2499 5.988561 TGAACATTTTTGAAGGGCATTACAC 59.011 36.000 0.00 0.00 0.00 2.90
2255 2634 2.504519 GCTGGTAACCGCTAGGGG 59.495 66.667 23.57 23.57 43.47 4.79
2260 2639 1.500303 TGGTAACCGCTAGGGGAGATA 59.500 52.381 31.00 17.22 43.47 1.98
2261 2640 2.111255 TGGTAACCGCTAGGGGAGATAT 59.889 50.000 31.00 13.69 43.47 1.63
2308 2687 6.492087 GGAAGGAAGCTATACATAGTGAGACT 59.508 42.308 0.00 0.00 32.96 3.24
2377 2756 3.972107 ACGCGTGAGAGTGGTTTTA 57.028 47.368 12.93 0.00 44.38 1.52
2422 2801 5.893500 TGGAGGGTTGGAAATGTATGTTTA 58.106 37.500 0.00 0.00 0.00 2.01
2433 2812 5.371115 AATGTATGTTTACACTGCCACAC 57.629 39.130 0.00 0.00 41.02 3.82
2438 2817 2.546368 TGTTTACACTGCCACACGATTC 59.454 45.455 0.00 0.00 0.00 2.52
2439 2818 2.806244 GTTTACACTGCCACACGATTCT 59.194 45.455 0.00 0.00 0.00 2.40
2440 2819 2.078849 TACACTGCCACACGATTCTG 57.921 50.000 0.00 0.00 0.00 3.02
2501 2880 7.436080 GGAATAAATGTGCATGTTAGTTCATGG 59.564 37.037 8.41 0.00 43.54 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.768684 GCACTCTCACCCTTCCACCA 61.769 60.000 0.00 0.00 0.00 4.17
35 36 9.706691 ACTAATGTTAAGTCCATGGATTATACG 57.293 33.333 19.62 5.47 0.00 3.06
42 43 9.613428 CTTTATGACTAATGTTAAGTCCATGGA 57.387 33.333 11.44 11.44 42.24 3.41
43 44 9.613428 TCTTTATGACTAATGTTAAGTCCATGG 57.387 33.333 4.97 4.97 42.24 3.66
81 82 9.554395 TCCGATGACTAATAGATTTTTGCAATA 57.446 29.630 0.00 0.00 0.00 1.90
82 83 8.450578 TCCGATGACTAATAGATTTTTGCAAT 57.549 30.769 0.00 0.00 0.00 3.56
83 84 7.857734 TCCGATGACTAATAGATTTTTGCAA 57.142 32.000 0.00 0.00 0.00 4.08
84 85 7.335673 TGTTCCGATGACTAATAGATTTTTGCA 59.664 33.333 0.00 0.00 0.00 4.08
85 86 7.693952 TGTTCCGATGACTAATAGATTTTTGC 58.306 34.615 0.00 0.00 0.00 3.68
88 89 9.449719 ACTTTGTTCCGATGACTAATAGATTTT 57.550 29.630 0.00 0.00 0.00 1.82
90 91 9.530633 GTACTTTGTTCCGATGACTAATAGATT 57.469 33.333 0.00 0.00 0.00 2.40
91 92 8.915036 AGTACTTTGTTCCGATGACTAATAGAT 58.085 33.333 0.00 0.00 0.00 1.98
92 93 8.289939 AGTACTTTGTTCCGATGACTAATAGA 57.710 34.615 0.00 0.00 0.00 1.98
94 95 9.961265 CATAGTACTTTGTTCCGATGACTAATA 57.039 33.333 0.00 0.00 0.00 0.98
95 96 7.438459 GCATAGTACTTTGTTCCGATGACTAAT 59.562 37.037 13.84 0.00 0.00 1.73
96 97 6.755141 GCATAGTACTTTGTTCCGATGACTAA 59.245 38.462 13.84 0.00 0.00 2.24
97 98 6.127563 TGCATAGTACTTTGTTCCGATGACTA 60.128 38.462 13.84 0.00 0.00 2.59
98 99 5.109903 GCATAGTACTTTGTTCCGATGACT 58.890 41.667 13.84 0.00 0.00 3.41
99 100 4.868171 TGCATAGTACTTTGTTCCGATGAC 59.132 41.667 13.84 1.87 0.00 3.06
100 101 4.868171 GTGCATAGTACTTTGTTCCGATGA 59.132 41.667 13.84 0.00 0.00 2.92
101 102 4.629634 TGTGCATAGTACTTTGTTCCGATG 59.370 41.667 13.84 4.72 0.00 3.84
102 103 4.827692 TGTGCATAGTACTTTGTTCCGAT 58.172 39.130 13.84 0.00 0.00 4.18
103 104 4.260139 TGTGCATAGTACTTTGTTCCGA 57.740 40.909 13.84 0.00 0.00 4.55
104 105 4.727734 GCATGTGCATAGTACTTTGTTCCG 60.728 45.833 13.84 2.56 41.59 4.30
105 106 4.396166 AGCATGTGCATAGTACTTTGTTCC 59.604 41.667 13.84 4.30 45.16 3.62
106 107 5.447818 GGAGCATGTGCATAGTACTTTGTTC 60.448 44.000 13.84 8.44 45.16 3.18
107 108 4.396166 GGAGCATGTGCATAGTACTTTGTT 59.604 41.667 13.84 0.00 45.16 2.83
108 109 3.941483 GGAGCATGTGCATAGTACTTTGT 59.059 43.478 13.84 0.00 45.16 2.83
109 110 4.194640 AGGAGCATGTGCATAGTACTTTG 58.805 43.478 0.00 4.57 45.16 2.77
110 111 4.494091 AGGAGCATGTGCATAGTACTTT 57.506 40.909 0.00 0.00 45.16 2.66
111 112 4.039730 CCTAGGAGCATGTGCATAGTACTT 59.960 45.833 1.05 0.00 45.16 2.24
112 113 3.576118 CCTAGGAGCATGTGCATAGTACT 59.424 47.826 1.05 0.00 45.16 2.73
113 114 3.306364 CCCTAGGAGCATGTGCATAGTAC 60.306 52.174 11.48 0.00 45.16 2.73
114 115 2.899900 CCCTAGGAGCATGTGCATAGTA 59.100 50.000 11.48 0.00 45.16 1.82
115 116 1.696336 CCCTAGGAGCATGTGCATAGT 59.304 52.381 11.48 0.00 45.16 2.12
116 117 1.002888 CCCCTAGGAGCATGTGCATAG 59.997 57.143 11.48 6.39 45.16 2.23
117 118 1.059098 CCCCTAGGAGCATGTGCATA 58.941 55.000 11.48 0.00 45.16 3.14
118 119 1.713005 CCCCCTAGGAGCATGTGCAT 61.713 60.000 11.48 0.00 45.16 3.96
119 120 2.377810 CCCCCTAGGAGCATGTGCA 61.378 63.158 11.48 0.00 45.16 4.57
120 121 2.072487 TCCCCCTAGGAGCATGTGC 61.072 63.158 11.48 0.00 40.93 4.57
121 122 4.399764 TCCCCCTAGGAGCATGTG 57.600 61.111 11.48 0.00 40.93 3.21
129 130 3.340049 TCCTACCAATCTATCCCCCTAGG 59.660 52.174 0.06 0.06 0.00 3.02
130 131 4.694280 TCCTACCAATCTATCCCCCTAG 57.306 50.000 0.00 0.00 0.00 3.02
131 132 5.443277 TTTCCTACCAATCTATCCCCCTA 57.557 43.478 0.00 0.00 0.00 3.53
132 133 4.311208 TTTCCTACCAATCTATCCCCCT 57.689 45.455 0.00 0.00 0.00 4.79
133 134 4.663592 TCTTTTCCTACCAATCTATCCCCC 59.336 45.833 0.00 0.00 0.00 5.40
134 135 5.456330 GGTCTTTTCCTACCAATCTATCCCC 60.456 48.000 0.00 0.00 35.73 4.81
135 136 5.132144 TGGTCTTTTCCTACCAATCTATCCC 59.868 44.000 0.00 0.00 42.74 3.85
136 137 6.248569 TGGTCTTTTCCTACCAATCTATCC 57.751 41.667 0.00 0.00 42.74 2.59
145 146 3.056035 ACGAGTGATGGTCTTTTCCTACC 60.056 47.826 0.00 0.00 36.24 3.18
146 147 4.174762 GACGAGTGATGGTCTTTTCCTAC 58.825 47.826 0.00 0.00 0.00 3.18
147 148 3.194968 GGACGAGTGATGGTCTTTTCCTA 59.805 47.826 0.00 0.00 33.70 2.94
148 149 2.028020 GGACGAGTGATGGTCTTTTCCT 60.028 50.000 0.00 0.00 33.70 3.36
149 150 2.028020 AGGACGAGTGATGGTCTTTTCC 60.028 50.000 0.00 0.00 33.70 3.13
150 151 3.254892 GAGGACGAGTGATGGTCTTTTC 58.745 50.000 0.00 0.00 33.70 2.29
151 152 2.352814 CGAGGACGAGTGATGGTCTTTT 60.353 50.000 0.00 0.00 42.66 2.27
152 153 1.202582 CGAGGACGAGTGATGGTCTTT 59.797 52.381 0.00 0.00 42.66 2.52
153 154 0.811915 CGAGGACGAGTGATGGTCTT 59.188 55.000 0.00 0.00 42.66 3.01
154 155 0.035343 TCGAGGACGAGTGATGGTCT 60.035 55.000 0.00 0.00 43.81 3.85
155 156 2.478989 TCGAGGACGAGTGATGGTC 58.521 57.895 0.00 0.00 43.81 4.02
156 157 4.736739 TCGAGGACGAGTGATGGT 57.263 55.556 0.00 0.00 43.81 3.55
164 165 1.970114 GAGTGGTGGTCGAGGACGA 60.970 63.158 0.00 0.00 46.56 4.20
165 166 1.595993 ATGAGTGGTGGTCGAGGACG 61.596 60.000 0.00 0.00 41.26 4.79
166 167 1.471119 TATGAGTGGTGGTCGAGGAC 58.529 55.000 0.00 0.00 0.00 3.85
167 168 2.100197 CTTATGAGTGGTGGTCGAGGA 58.900 52.381 0.00 0.00 0.00 3.71
168 169 1.137086 CCTTATGAGTGGTGGTCGAGG 59.863 57.143 0.00 0.00 0.00 4.63
169 170 2.100197 TCCTTATGAGTGGTGGTCGAG 58.900 52.381 0.00 0.00 0.00 4.04
170 171 2.225382 TCCTTATGAGTGGTGGTCGA 57.775 50.000 0.00 0.00 0.00 4.20
171 172 2.496070 TCTTCCTTATGAGTGGTGGTCG 59.504 50.000 0.00 0.00 0.00 4.79
172 173 3.260884 TGTCTTCCTTATGAGTGGTGGTC 59.739 47.826 0.00 0.00 0.00 4.02
173 174 3.248024 TGTCTTCCTTATGAGTGGTGGT 58.752 45.455 0.00 0.00 0.00 4.16
174 175 3.981071 TGTCTTCCTTATGAGTGGTGG 57.019 47.619 0.00 0.00 0.00 4.61
175 176 5.491070 TGATTGTCTTCCTTATGAGTGGTG 58.509 41.667 0.00 0.00 0.00 4.17
176 177 5.762179 TGATTGTCTTCCTTATGAGTGGT 57.238 39.130 0.00 0.00 0.00 4.16
177 178 8.737168 TTATTGATTGTCTTCCTTATGAGTGG 57.263 34.615 0.00 0.00 0.00 4.00
187 188 9.837525 GCATGAGATATTTATTGATTGTCTTCC 57.162 33.333 0.00 0.00 0.00 3.46
190 191 9.228949 GGAGCATGAGATATTTATTGATTGTCT 57.771 33.333 0.00 0.00 0.00 3.41
191 192 9.006839 TGGAGCATGAGATATTTATTGATTGTC 57.993 33.333 0.00 0.00 0.00 3.18
192 193 8.929260 TGGAGCATGAGATATTTATTGATTGT 57.071 30.769 0.00 0.00 0.00 2.71
193 194 9.622004 GTTGGAGCATGAGATATTTATTGATTG 57.378 33.333 0.00 0.00 0.00 2.67
194 195 9.584008 AGTTGGAGCATGAGATATTTATTGATT 57.416 29.630 0.00 0.00 0.00 2.57
195 196 9.584008 AAGTTGGAGCATGAGATATTTATTGAT 57.416 29.630 0.00 0.00 0.00 2.57
196 197 8.985315 AAGTTGGAGCATGAGATATTTATTGA 57.015 30.769 0.00 0.00 0.00 2.57
202 203 9.851686 TGTAATTAAGTTGGAGCATGAGATATT 57.148 29.630 0.00 0.00 0.00 1.28
205 206 9.851686 TTATGTAATTAAGTTGGAGCATGAGAT 57.148 29.630 0.00 0.00 0.00 2.75
206 207 9.109393 GTTATGTAATTAAGTTGGAGCATGAGA 57.891 33.333 0.00 0.00 0.00 3.27
207 208 8.064222 CGTTATGTAATTAAGTTGGAGCATGAG 58.936 37.037 0.00 0.00 0.00 2.90
208 209 7.011950 CCGTTATGTAATTAAGTTGGAGCATGA 59.988 37.037 0.00 0.00 0.00 3.07
209 210 7.132213 CCGTTATGTAATTAAGTTGGAGCATG 58.868 38.462 0.00 0.00 0.00 4.06
210 211 6.826741 ACCGTTATGTAATTAAGTTGGAGCAT 59.173 34.615 0.00 0.00 0.00 3.79
211 212 6.174760 ACCGTTATGTAATTAAGTTGGAGCA 58.825 36.000 0.00 0.00 0.00 4.26
212 213 6.673154 ACCGTTATGTAATTAAGTTGGAGC 57.327 37.500 0.00 0.00 0.00 4.70
213 214 8.173130 GTGAACCGTTATGTAATTAAGTTGGAG 58.827 37.037 0.00 0.00 0.00 3.86
214 215 7.119553 GGTGAACCGTTATGTAATTAAGTTGGA 59.880 37.037 0.00 0.00 0.00 3.53
215 216 7.094720 TGGTGAACCGTTATGTAATTAAGTTGG 60.095 37.037 0.00 0.00 39.43 3.77
216 217 7.808672 TGGTGAACCGTTATGTAATTAAGTTG 58.191 34.615 0.00 0.00 39.43 3.16
217 218 7.982761 TGGTGAACCGTTATGTAATTAAGTT 57.017 32.000 0.00 0.00 39.43 2.66
218 219 9.669887 TTATGGTGAACCGTTATGTAATTAAGT 57.330 29.630 0.00 0.00 39.43 2.24
220 221 9.669887 ACTTATGGTGAACCGTTATGTAATTAA 57.330 29.630 0.00 0.00 39.43 1.40
238 239 2.442878 TCCCATAGCATGCACTTATGGT 59.557 45.455 28.92 11.88 41.29 3.55
239 240 3.144657 TCCCATAGCATGCACTTATGG 57.855 47.619 26.50 26.50 37.88 2.74
240 241 4.763279 TGATTCCCATAGCATGCACTTATG 59.237 41.667 21.98 17.88 0.00 1.90
241 242 4.763793 GTGATTCCCATAGCATGCACTTAT 59.236 41.667 21.98 6.28 0.00 1.73
242 243 4.136796 GTGATTCCCATAGCATGCACTTA 58.863 43.478 21.98 3.75 0.00 2.24
243 244 2.954318 GTGATTCCCATAGCATGCACTT 59.046 45.455 21.98 1.04 0.00 3.16
244 245 2.092267 TGTGATTCCCATAGCATGCACT 60.092 45.455 21.98 1.90 0.00 4.40
245 246 2.300433 TGTGATTCCCATAGCATGCAC 58.700 47.619 21.98 5.47 0.00 4.57
246 247 2.732844 TGTGATTCCCATAGCATGCA 57.267 45.000 21.98 6.36 0.00 3.96
247 248 3.491447 GGTTTGTGATTCCCATAGCATGC 60.491 47.826 10.51 10.51 0.00 4.06
248 249 3.956199 AGGTTTGTGATTCCCATAGCATG 59.044 43.478 0.00 0.00 0.00 4.06
249 250 4.210331 GAGGTTTGTGATTCCCATAGCAT 58.790 43.478 0.00 0.00 0.00 3.79
250 251 3.010027 TGAGGTTTGTGATTCCCATAGCA 59.990 43.478 0.00 0.00 0.00 3.49
251 252 3.620488 TGAGGTTTGTGATTCCCATAGC 58.380 45.455 0.00 0.00 0.00 2.97
252 253 5.009631 TGTTGAGGTTTGTGATTCCCATAG 58.990 41.667 0.00 0.00 0.00 2.23
253 254 4.764823 GTGTTGAGGTTTGTGATTCCCATA 59.235 41.667 0.00 0.00 0.00 2.74
254 255 3.573967 GTGTTGAGGTTTGTGATTCCCAT 59.426 43.478 0.00 0.00 0.00 4.00
255 256 2.955660 GTGTTGAGGTTTGTGATTCCCA 59.044 45.455 0.00 0.00 0.00 4.37
256 257 2.955660 TGTGTTGAGGTTTGTGATTCCC 59.044 45.455 0.00 0.00 0.00 3.97
257 258 4.097892 ACTTGTGTTGAGGTTTGTGATTCC 59.902 41.667 0.00 0.00 0.00 3.01
258 259 5.248870 ACTTGTGTTGAGGTTTGTGATTC 57.751 39.130 0.00 0.00 0.00 2.52
259 260 6.772716 AGATACTTGTGTTGAGGTTTGTGATT 59.227 34.615 0.00 0.00 0.00 2.57
260 261 6.299141 AGATACTTGTGTTGAGGTTTGTGAT 58.701 36.000 0.00 0.00 0.00 3.06
261 262 5.680619 AGATACTTGTGTTGAGGTTTGTGA 58.319 37.500 0.00 0.00 0.00 3.58
262 263 5.760253 AGAGATACTTGTGTTGAGGTTTGTG 59.240 40.000 0.00 0.00 0.00 3.33
263 264 5.930135 AGAGATACTTGTGTTGAGGTTTGT 58.070 37.500 0.00 0.00 0.00 2.83
264 265 5.991606 TGAGAGATACTTGTGTTGAGGTTTG 59.008 40.000 0.00 0.00 0.00 2.93
265 266 6.174720 TGAGAGATACTTGTGTTGAGGTTT 57.825 37.500 0.00 0.00 0.00 3.27
266 267 5.808366 TGAGAGATACTTGTGTTGAGGTT 57.192 39.130 0.00 0.00 0.00 3.50
267 268 5.808366 TTGAGAGATACTTGTGTTGAGGT 57.192 39.130 0.00 0.00 0.00 3.85
268 269 7.388776 TGAATTTGAGAGATACTTGTGTTGAGG 59.611 37.037 0.00 0.00 0.00 3.86
269 270 8.315391 TGAATTTGAGAGATACTTGTGTTGAG 57.685 34.615 0.00 0.00 0.00 3.02
270 271 8.724229 CATGAATTTGAGAGATACTTGTGTTGA 58.276 33.333 0.00 0.00 0.00 3.18
271 272 8.724229 TCATGAATTTGAGAGATACTTGTGTTG 58.276 33.333 0.00 0.00 0.00 3.33
272 273 8.853077 TCATGAATTTGAGAGATACTTGTGTT 57.147 30.769 0.00 0.00 0.00 3.32
273 274 9.458727 AATCATGAATTTGAGAGATACTTGTGT 57.541 29.630 0.00 0.00 0.00 3.72
290 291 9.703892 GAGTCATGCTAGTAAGTAATCATGAAT 57.296 33.333 0.00 6.28 40.99 2.57
291 292 8.918116 AGAGTCATGCTAGTAAGTAATCATGAA 58.082 33.333 0.00 0.00 40.99 2.57
292 293 8.470657 AGAGTCATGCTAGTAAGTAATCATGA 57.529 34.615 0.00 0.00 38.25 3.07
293 294 9.838975 CTAGAGTCATGCTAGTAAGTAATCATG 57.161 37.037 0.00 0.00 32.57 3.07
294 295 9.581289 ACTAGAGTCATGCTAGTAAGTAATCAT 57.419 33.333 9.09 0.00 44.90 2.45
295 296 8.982091 ACTAGAGTCATGCTAGTAAGTAATCA 57.018 34.615 9.09 0.00 44.90 2.57
305 306 6.658816 AGATGGTGATACTAGAGTCATGCTAG 59.341 42.308 0.00 4.77 40.84 3.42
306 307 6.547402 AGATGGTGATACTAGAGTCATGCTA 58.453 40.000 0.00 0.00 0.00 3.49
307 308 5.392995 AGATGGTGATACTAGAGTCATGCT 58.607 41.667 0.00 0.00 0.00 3.79
308 309 5.720371 AGATGGTGATACTAGAGTCATGC 57.280 43.478 0.00 0.00 0.00 4.06
309 310 7.282332 TGAAGATGGTGATACTAGAGTCATG 57.718 40.000 0.00 0.00 0.00 3.07
310 311 9.766754 ATATGAAGATGGTGATACTAGAGTCAT 57.233 33.333 0.00 0.00 0.00 3.06
311 312 9.237187 GATATGAAGATGGTGATACTAGAGTCA 57.763 37.037 0.00 0.00 0.00 3.41
312 313 9.461312 AGATATGAAGATGGTGATACTAGAGTC 57.539 37.037 0.00 0.00 0.00 3.36
313 314 9.821240 AAGATATGAAGATGGTGATACTAGAGT 57.179 33.333 0.00 0.00 0.00 3.24
315 316 9.813826 TCAAGATATGAAGATGGTGATACTAGA 57.186 33.333 0.00 0.00 34.30 2.43
336 337 9.912634 GTTTGATTCCTTATGATTGTTTCAAGA 57.087 29.630 0.00 0.00 38.03 3.02
337 338 9.918630 AGTTTGATTCCTTATGATTGTTTCAAG 57.081 29.630 0.00 0.00 38.03 3.02
339 340 9.912634 GAAGTTTGATTCCTTATGATTGTTTCA 57.087 29.630 0.00 0.00 39.12 2.69
342 343 9.300681 TGAGAAGTTTGATTCCTTATGATTGTT 57.699 29.630 0.00 0.00 0.00 2.83
343 344 8.868522 TGAGAAGTTTGATTCCTTATGATTGT 57.131 30.769 0.00 0.00 0.00 2.71
351 352 8.772250 TGGATACTATGAGAAGTTTGATTCCTT 58.228 33.333 0.00 0.00 37.61 3.36
352 353 8.324191 TGGATACTATGAGAAGTTTGATTCCT 57.676 34.615 0.00 0.00 37.61 3.36
353 354 8.964476 TTGGATACTATGAGAAGTTTGATTCC 57.036 34.615 0.00 0.00 37.61 3.01
370 371 9.632638 ACTTTCATATAAAGTGCATTGGATACT 57.367 29.630 2.49 0.00 38.88 2.12
374 375 9.995003 AAAAACTTTCATATAAAGTGCATTGGA 57.005 25.926 4.05 0.00 40.10 3.53
407 408 7.753278 CCTAGTATGATAGGAATCCAAGAGGGA 60.753 44.444 0.61 0.00 46.83 4.20
408 409 6.382570 CCTAGTATGATAGGAATCCAAGAGGG 59.617 46.154 0.61 0.00 44.50 4.30
409 410 7.185565 TCCTAGTATGATAGGAATCCAAGAGG 58.814 42.308 0.61 0.00 46.68 3.69
428 429 9.969001 TGCTTTGGTTATAAATTTAGTCCTAGT 57.031 29.630 3.94 0.00 0.00 2.57
439 440 9.108284 GCATGGTAATTTGCTTTGGTTATAAAT 57.892 29.630 0.00 0.00 35.95 1.40
440 441 8.317679 AGCATGGTAATTTGCTTTGGTTATAAA 58.682 29.630 0.00 0.00 46.71 1.40
441 442 7.763528 CAGCATGGTAATTTGCTTTGGTTATAA 59.236 33.333 0.00 0.00 46.71 0.98
442 443 7.093552 ACAGCATGGTAATTTGCTTTGGTTATA 60.094 33.333 0.00 0.00 46.71 0.98
443 444 6.108015 CAGCATGGTAATTTGCTTTGGTTAT 58.892 36.000 0.00 0.00 46.71 1.89
444 445 5.011533 ACAGCATGGTAATTTGCTTTGGTTA 59.988 36.000 0.00 0.00 46.71 2.85
445 446 4.202346 ACAGCATGGTAATTTGCTTTGGTT 60.202 37.500 0.00 0.00 46.71 3.67
446 447 3.324556 ACAGCATGGTAATTTGCTTTGGT 59.675 39.130 0.00 0.00 46.71 3.67
447 448 3.928375 GACAGCATGGTAATTTGCTTTGG 59.072 43.478 0.00 0.00 46.71 3.28
448 449 4.813027 AGACAGCATGGTAATTTGCTTTG 58.187 39.130 0.00 0.00 46.71 2.77
449 450 6.588719 TTAGACAGCATGGTAATTTGCTTT 57.411 33.333 0.00 0.00 46.71 3.51
450 451 6.588719 TTTAGACAGCATGGTAATTTGCTT 57.411 33.333 0.00 0.00 46.71 3.91
452 453 7.062255 GTCTTTTTAGACAGCATGGTAATTTGC 59.938 37.037 0.00 0.00 43.62 3.68
453 454 8.299570 AGTCTTTTTAGACAGCATGGTAATTTG 58.700 33.333 0.00 0.00 43.62 2.32
454 455 8.409358 AGTCTTTTTAGACAGCATGGTAATTT 57.591 30.769 0.00 0.00 43.62 1.82
455 456 7.885399 AGAGTCTTTTTAGACAGCATGGTAATT 59.115 33.333 0.00 0.00 43.62 1.40
456 457 7.398024 AGAGTCTTTTTAGACAGCATGGTAAT 58.602 34.615 0.00 0.00 43.62 1.89
457 458 6.769512 AGAGTCTTTTTAGACAGCATGGTAA 58.230 36.000 0.00 0.00 43.62 2.85
458 459 6.014584 TGAGAGTCTTTTTAGACAGCATGGTA 60.015 38.462 0.00 0.00 43.62 3.25
459 460 5.221722 TGAGAGTCTTTTTAGACAGCATGGT 60.222 40.000 7.92 0.00 43.62 3.55
460 461 5.240891 TGAGAGTCTTTTTAGACAGCATGG 58.759 41.667 7.92 0.00 43.62 3.66
461 462 6.791887 TTGAGAGTCTTTTTAGACAGCATG 57.208 37.500 7.92 0.00 46.00 4.06
462 463 7.807977 TTTTGAGAGTCTTTTTAGACAGCAT 57.192 32.000 7.92 0.00 41.02 3.79
463 464 7.807977 ATTTTGAGAGTCTTTTTAGACAGCA 57.192 32.000 7.92 0.72 41.02 4.41
488 489 9.624373 ATTGAACTCTCATGCTTCACTTATATT 57.376 29.630 0.00 0.00 0.00 1.28
491 492 9.624373 ATTATTGAACTCTCATGCTTCACTTAT 57.376 29.630 0.00 0.00 0.00 1.73
492 493 9.453572 AATTATTGAACTCTCATGCTTCACTTA 57.546 29.630 0.00 0.00 0.00 2.24
493 494 7.934855 ATTATTGAACTCTCATGCTTCACTT 57.065 32.000 0.00 0.00 0.00 3.16
494 495 7.934855 AATTATTGAACTCTCATGCTTCACT 57.065 32.000 0.00 0.00 0.00 3.41
495 496 8.457261 AGAAATTATTGAACTCTCATGCTTCAC 58.543 33.333 0.00 0.00 0.00 3.18
496 497 8.571461 AGAAATTATTGAACTCTCATGCTTCA 57.429 30.769 0.00 0.00 0.00 3.02
515 516 8.532819 TGGCGGTGGTTTTATTTTATAGAAATT 58.467 29.630 0.00 0.00 0.00 1.82
516 517 8.068892 TGGCGGTGGTTTTATTTTATAGAAAT 57.931 30.769 0.00 0.00 0.00 2.17
517 518 7.463961 TGGCGGTGGTTTTATTTTATAGAAA 57.536 32.000 0.00 0.00 0.00 2.52
518 519 7.484975 CATGGCGGTGGTTTTATTTTATAGAA 58.515 34.615 0.00 0.00 0.00 2.10
519 520 6.460399 GCATGGCGGTGGTTTTATTTTATAGA 60.460 38.462 0.00 0.00 0.00 1.98
520 521 5.689961 GCATGGCGGTGGTTTTATTTTATAG 59.310 40.000 0.00 0.00 0.00 1.31
521 522 5.361285 AGCATGGCGGTGGTTTTATTTTATA 59.639 36.000 0.00 0.00 0.00 0.98
522 523 4.161377 AGCATGGCGGTGGTTTTATTTTAT 59.839 37.500 0.00 0.00 0.00 1.40
523 524 3.511934 AGCATGGCGGTGGTTTTATTTTA 59.488 39.130 0.00 0.00 0.00 1.52
524 525 2.301583 AGCATGGCGGTGGTTTTATTTT 59.698 40.909 0.00 0.00 0.00 1.82
525 526 1.899142 AGCATGGCGGTGGTTTTATTT 59.101 42.857 0.00 0.00 0.00 1.40
526 527 1.476488 GAGCATGGCGGTGGTTTTATT 59.524 47.619 0.00 0.00 0.00 1.40
527 528 1.102978 GAGCATGGCGGTGGTTTTAT 58.897 50.000 0.00 0.00 0.00 1.40
528 529 0.037590 AGAGCATGGCGGTGGTTTTA 59.962 50.000 0.00 0.00 0.00 1.52
529 530 0.037590 TAGAGCATGGCGGTGGTTTT 59.962 50.000 0.00 0.00 0.00 2.43
530 531 0.037590 TTAGAGCATGGCGGTGGTTT 59.962 50.000 0.00 0.00 0.00 3.27
531 532 0.037590 TTTAGAGCATGGCGGTGGTT 59.962 50.000 0.00 0.00 0.00 3.67
532 533 0.037590 TTTTAGAGCATGGCGGTGGT 59.962 50.000 0.00 0.00 0.00 4.16
533 534 1.066002 CATTTTAGAGCATGGCGGTGG 59.934 52.381 0.00 0.00 0.00 4.61
534 535 2.016318 TCATTTTAGAGCATGGCGGTG 58.984 47.619 0.00 0.00 0.00 4.94
535 536 2.418368 TCATTTTAGAGCATGGCGGT 57.582 45.000 0.00 0.00 0.00 5.68
536 537 6.372659 ACTTATATCATTTTAGAGCATGGCGG 59.627 38.462 0.00 0.00 0.00 6.13
537 538 7.118245 TCACTTATATCATTTTAGAGCATGGCG 59.882 37.037 0.00 0.00 0.00 5.69
538 539 8.327941 TCACTTATATCATTTTAGAGCATGGC 57.672 34.615 0.00 0.00 0.00 4.40
540 541 9.823098 GCTTCACTTATATCATTTTAGAGCATG 57.177 33.333 0.00 0.00 0.00 4.06
541 542 9.565090 TGCTTCACTTATATCATTTTAGAGCAT 57.435 29.630 0.00 0.00 0.00 3.79
542 543 8.962884 TGCTTCACTTATATCATTTTAGAGCA 57.037 30.769 0.00 0.00 0.00 4.26
543 544 9.050601 ACTGCTTCACTTATATCATTTTAGAGC 57.949 33.333 0.00 0.00 0.00 4.09
548 549 9.050601 GCTCTACTGCTTCACTTATATCATTTT 57.949 33.333 0.00 0.00 0.00 1.82
549 550 8.206867 TGCTCTACTGCTTCACTTATATCATTT 58.793 33.333 0.00 0.00 0.00 2.32
550 551 7.730084 TGCTCTACTGCTTCACTTATATCATT 58.270 34.615 0.00 0.00 0.00 2.57
551 552 7.295322 TGCTCTACTGCTTCACTTATATCAT 57.705 36.000 0.00 0.00 0.00 2.45
552 553 6.715347 TGCTCTACTGCTTCACTTATATCA 57.285 37.500 0.00 0.00 0.00 2.15
553 554 8.425577 TTTTGCTCTACTGCTTCACTTATATC 57.574 34.615 0.00 0.00 0.00 1.63
554 555 8.970859 ATTTTGCTCTACTGCTTCACTTATAT 57.029 30.769 0.00 0.00 0.00 0.86
555 556 8.668353 CAATTTTGCTCTACTGCTTCACTTATA 58.332 33.333 0.00 0.00 0.00 0.98
556 557 7.533426 CAATTTTGCTCTACTGCTTCACTTAT 58.467 34.615 0.00 0.00 0.00 1.73
557 558 6.902341 CAATTTTGCTCTACTGCTTCACTTA 58.098 36.000 0.00 0.00 0.00 2.24
558 559 5.766222 CAATTTTGCTCTACTGCTTCACTT 58.234 37.500 0.00 0.00 0.00 3.16
559 560 5.368256 CAATTTTGCTCTACTGCTTCACT 57.632 39.130 0.00 0.00 0.00 3.41
572 573 8.921205 ATATCTTTTGAGATAGGCAATTTTGCT 58.079 29.630 14.40 4.32 41.47 3.91
593 594 9.755122 GGCAAAAGGATAATTAACCCTATATCT 57.245 33.333 8.09 0.00 0.00 1.98
594 595 8.967918 GGGCAAAAGGATAATTAACCCTATATC 58.032 37.037 8.09 0.00 31.84 1.63
595 596 8.688117 AGGGCAAAAGGATAATTAACCCTATAT 58.312 33.333 8.09 0.00 43.36 0.86
623 624 0.883833 CTGAGCAAATGGACACCACC 59.116 55.000 0.00 0.00 35.80 4.61
652 653 1.001974 ACTGAGCACAATCCGCAACTA 59.998 47.619 0.00 0.00 0.00 2.24
660 661 1.337167 GGGGCAAAACTGAGCACAATC 60.337 52.381 0.00 0.00 35.37 2.67
725 729 3.127721 GCTGAGTCAAAAGGTTATCCTGC 59.872 47.826 0.00 0.00 44.35 4.85
730 734 4.388577 AAGGGCTGAGTCAAAAGGTTAT 57.611 40.909 0.00 0.00 0.00 1.89
731 735 3.876309 AAGGGCTGAGTCAAAAGGTTA 57.124 42.857 0.00 0.00 0.00 2.85
745 749 0.345502 TGGTCCCACCTATAAGGGCT 59.654 55.000 0.00 0.00 45.07 5.19
753 757 2.335681 TTGTCATCTGGTCCCACCTA 57.664 50.000 0.00 0.00 39.58 3.08
866 916 1.221840 GTCATCATGGTCACCGCCT 59.778 57.895 0.00 0.00 0.00 5.52
937 1022 1.066143 CACAACTATCTTCCCACCGCT 60.066 52.381 0.00 0.00 0.00 5.52
964 1049 0.526662 GGAGATCTCAACACCGTCGT 59.473 55.000 23.85 0.00 0.00 4.34
981 1066 1.296715 GAAGCTCGGAGCCAAAGGA 59.703 57.895 25.49 0.00 43.77 3.36
1019 1104 2.747460 GCATCTGCGAGGTGGCAA 60.747 61.111 0.00 0.00 43.39 4.52
1057 1142 4.118410 CACAGACAGATGAAGATAGGCAC 58.882 47.826 0.00 0.00 0.00 5.01
1087 1172 4.891727 CCTCCGATCAACGCCCGG 62.892 72.222 0.00 0.00 44.22 5.73
1218 1304 4.341806 TCCTGCATGAACACAAAACAGATT 59.658 37.500 0.00 0.00 0.00 2.40
1227 1313 3.489355 ACATTTCTCCTGCATGAACACA 58.511 40.909 0.00 0.00 0.00 3.72
1261 1347 1.490490 AGTCTTGGCCAGAGTGTTGAA 59.510 47.619 5.11 0.00 33.43 2.69
1264 1350 1.071385 CAGAGTCTTGGCCAGAGTGTT 59.929 52.381 5.11 0.00 35.03 3.32
1266 1352 0.972134 TCAGAGTCTTGGCCAGAGTG 59.028 55.000 5.11 4.49 35.03 3.51
1267 1353 1.554160 CATCAGAGTCTTGGCCAGAGT 59.446 52.381 5.11 8.92 37.96 3.24
1317 1403 0.240678 TTTGTGGCAGCATACGCAAG 59.759 50.000 0.00 0.00 42.27 4.01
1341 1427 2.897350 GCTCGTGCTATGGCCACC 60.897 66.667 8.16 0.00 37.74 4.61
1487 1771 7.416664 CCAGTGCAATTACCATAGCTACAAATT 60.417 37.037 0.00 0.00 0.00 1.82
1559 1845 9.559958 AATTTCTCATACAATTTCAAGCTTACG 57.440 29.630 0.00 0.00 0.00 3.18
1665 2015 8.115490 TGAATTTCTCATTTCTTCTCCCTTTC 57.885 34.615 0.00 0.00 0.00 2.62
1759 2117 1.294857 GGCTCTCCGCTCTGAATTTC 58.705 55.000 0.00 0.00 39.13 2.17
1802 2160 4.164843 TGGGCCTAATTGGATGTAGTTC 57.835 45.455 4.53 0.00 38.35 3.01
1807 2165 2.586425 CGAATGGGCCTAATTGGATGT 58.414 47.619 4.53 0.00 38.35 3.06
1852 2210 9.811995 AATAAGAACAGAAAACCTAAAAACACC 57.188 29.630 0.00 0.00 0.00 4.16
2006 2374 5.872617 TCACGGTGTATTTGAATTGGAGTAG 59.127 40.000 8.17 0.00 0.00 2.57
2192 2570 2.572284 GTCCTGGGTTCGAGTCCG 59.428 66.667 0.00 0.00 37.07 4.79
2255 2634 6.541641 AGCCATGTCAAAGTCTTTCATATCTC 59.458 38.462 0.00 0.00 0.00 2.75
2260 2639 4.946157 CCTAGCCATGTCAAAGTCTTTCAT 59.054 41.667 0.00 0.00 0.00 2.57
2261 2640 4.326826 CCTAGCCATGTCAAAGTCTTTCA 58.673 43.478 0.00 0.00 0.00 2.69
2308 2687 7.039223 TGTTTTTAAACCCTAAACCAAGTCACA 60.039 33.333 3.13 0.00 38.11 3.58
2377 2756 5.179182 CCAAAAGTTCAGTGCAAAACAAAGT 59.821 36.000 9.68 0.00 0.00 2.66
2422 2801 0.603707 CCAGAATCGTGTGGCAGTGT 60.604 55.000 0.00 0.00 30.12 3.55
2433 2812 2.893637 CCACTCTAACCACCAGAATCG 58.106 52.381 0.00 0.00 0.00 3.34
2438 2817 0.687354 AGTGCCACTCTAACCACCAG 59.313 55.000 0.00 0.00 0.00 4.00
2439 2818 1.136828 AAGTGCCACTCTAACCACCA 58.863 50.000 0.00 0.00 0.00 4.17
2440 2819 1.523758 CAAGTGCCACTCTAACCACC 58.476 55.000 0.00 0.00 0.00 4.61
2501 2880 5.921962 ATCATTTCTTCCCTAAACCAAGC 57.078 39.130 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.