Multiple sequence alignment - TraesCS2B01G375900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G375900 chr2B 100.000 2653 0 0 1 2653 538957113 538954461 0.000000e+00 4900.0
1 TraesCS2B01G375900 chr2A 89.621 1426 83 25 1256 2653 601338707 601337319 0.000000e+00 1753.0
2 TraesCS2B01G375900 chr2A 91.009 912 44 19 368 1260 601343529 601342637 0.000000e+00 1195.0
3 TraesCS2B01G375900 chr2A 88.077 260 24 5 2 257 601391991 601391735 4.290000e-78 302.0
4 TraesCS2B01G375900 chr2D 85.927 1009 87 27 888 1882 457655376 457654409 0.000000e+00 1026.0
5 TraesCS2B01G375900 chr2D 88.114 774 30 10 1927 2653 457654212 457653454 0.000000e+00 863.0
6 TraesCS2B01G375900 chr2D 88.889 198 6 9 340 532 457655787 457655601 2.050000e-56 230.0
7 TraesCS2B01G375900 chr2D 89.032 155 8 2 683 837 457655519 457655374 1.620000e-42 183.0
8 TraesCS2B01G375900 chr2D 96.296 81 3 0 1 81 457662477 457662397 1.660000e-27 134.0
9 TraesCS2B01G375900 chr2D 94.545 55 3 0 585 639 457655585 457655531 4.710000e-13 86.1
10 TraesCS2B01G375900 chr7A 96.774 93 1 1 1753 1845 209592932 209593022 1.270000e-33 154.0
11 TraesCS2B01G375900 chr7D 94.737 95 3 1 1754 1848 199564227 199564319 2.130000e-31 147.0
12 TraesCS2B01G375900 chr3B 93.939 99 3 3 1747 1844 805612349 805612445 2.130000e-31 147.0
13 TraesCS2B01G375900 chr3B 93.939 99 3 3 1747 1844 805619138 805619234 2.130000e-31 147.0
14 TraesCS2B01G375900 chr3B 93.617 94 3 2 1753 1844 822106286 822106194 1.280000e-28 137.0
15 TraesCS2B01G375900 chr3D 93.617 94 5 1 1751 1843 610081465 610081372 3.560000e-29 139.0
16 TraesCS2B01G375900 chr3D 93.617 94 4 2 1761 1852 610184507 610184414 3.560000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G375900 chr2B 538954461 538957113 2652 True 4900.00 4900 100.0000 1 2653 1 chr2B.!!$R1 2652
1 TraesCS2B01G375900 chr2A 601337319 601343529 6210 True 1474.00 1753 90.3150 368 2653 2 chr2A.!!$R2 2285
2 TraesCS2B01G375900 chr2D 457653454 457655787 2333 True 477.62 1026 89.3014 340 2653 5 chr2D.!!$R2 2313

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 99 0.031178 GCCAAGTGTTGACCTGCAAG 59.969 55.0 0.00 0.00 37.12 4.01 F
164 165 0.320421 AAACGACAGGCGCTACATGT 60.320 50.0 7.64 2.69 46.04 3.21 F
651 657 0.391130 TTACAGCTAGCGTTGGCAGG 60.391 55.0 10.70 4.11 43.41 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1367 5339 0.031585 TCACCGTCACCTTGTTCTCG 59.968 55.000 0.00 0.0 0.00 4.04 R
1574 5546 0.178068 GCGGCCTCTGGAACTCATTA 59.822 55.000 0.00 0.0 0.00 1.90 R
2187 6341 1.337447 GCTAGTGCTTGGTACCGTCAA 60.337 52.381 7.57 0.0 36.03 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.512516 GCCGAAGATGCTGGCCAC 61.513 66.667 0.00 0.00 43.06 5.01
21 22 3.197790 CCGAAGATGCTGGCCACG 61.198 66.667 0.00 1.02 0.00 4.94
22 23 3.197790 CGAAGATGCTGGCCACGG 61.198 66.667 0.00 0.00 0.00 4.94
23 24 2.825836 GAAGATGCTGGCCACGGG 60.826 66.667 0.00 0.00 0.00 5.28
24 25 4.431131 AAGATGCTGGCCACGGGG 62.431 66.667 0.00 0.00 37.18 5.73
37 38 3.461773 CGGGGTCGTGGATGCTCT 61.462 66.667 0.00 0.00 0.00 4.09
38 39 2.990479 GGGGTCGTGGATGCTCTT 59.010 61.111 0.00 0.00 0.00 2.85
39 40 1.153349 GGGGTCGTGGATGCTCTTC 60.153 63.158 0.00 0.00 0.00 2.87
40 41 1.596934 GGGTCGTGGATGCTCTTCA 59.403 57.895 0.00 0.00 0.00 3.02
41 42 0.460987 GGGTCGTGGATGCTCTTCAG 60.461 60.000 0.00 0.00 0.00 3.02
42 43 0.460987 GGTCGTGGATGCTCTTCAGG 60.461 60.000 0.00 0.00 0.00 3.86
43 44 0.460987 GTCGTGGATGCTCTTCAGGG 60.461 60.000 0.00 0.00 0.00 4.45
44 45 1.817099 CGTGGATGCTCTTCAGGGC 60.817 63.158 0.00 0.00 0.00 5.19
45 46 1.606531 GTGGATGCTCTTCAGGGCT 59.393 57.895 0.00 0.00 0.00 5.19
46 47 0.833287 GTGGATGCTCTTCAGGGCTA 59.167 55.000 0.00 0.00 0.00 3.93
47 48 1.419387 GTGGATGCTCTTCAGGGCTAT 59.581 52.381 0.00 0.00 0.00 2.97
48 49 1.419012 TGGATGCTCTTCAGGGCTATG 59.581 52.381 0.00 0.00 0.00 2.23
49 50 1.696336 GGATGCTCTTCAGGGCTATGA 59.304 52.381 0.00 0.00 0.00 2.15
50 51 2.105477 GGATGCTCTTCAGGGCTATGAA 59.895 50.000 0.00 5.74 37.60 2.57
51 52 2.698855 TGCTCTTCAGGGCTATGAAC 57.301 50.000 0.00 0.00 35.40 3.18
52 53 1.134699 TGCTCTTCAGGGCTATGAACG 60.135 52.381 0.00 0.00 35.40 3.95
53 54 1.808133 GCTCTTCAGGGCTATGAACGG 60.808 57.143 0.00 0.95 35.40 4.44
54 55 0.830648 TCTTCAGGGCTATGAACGGG 59.169 55.000 2.25 0.00 35.40 5.28
55 56 0.830648 CTTCAGGGCTATGAACGGGA 59.169 55.000 2.25 0.00 35.40 5.14
56 57 1.417890 CTTCAGGGCTATGAACGGGAT 59.582 52.381 2.25 0.00 35.40 3.85
57 58 1.048601 TCAGGGCTATGAACGGGATC 58.951 55.000 0.00 0.00 0.00 3.36
58 59 0.035458 CAGGGCTATGAACGGGATCC 59.965 60.000 1.92 1.92 0.00 3.36
59 60 1.128188 AGGGCTATGAACGGGATCCC 61.128 60.000 22.12 22.12 0.00 3.85
69 70 4.547367 GGGATCCCGTTCCCGCTG 62.547 72.222 17.02 0.00 45.84 5.18
70 71 4.547367 GGATCCCGTTCCCGCTGG 62.547 72.222 0.00 0.00 0.00 4.85
71 72 3.467226 GATCCCGTTCCCGCTGGA 61.467 66.667 0.00 0.00 39.54 3.86
78 79 3.462169 TTCCCGCTGGAAGACGAA 58.538 55.556 5.36 0.00 45.88 3.85
79 80 1.292223 TTCCCGCTGGAAGACGAAG 59.708 57.895 5.36 0.00 45.88 3.79
80 81 2.781595 TTCCCGCTGGAAGACGAAGC 62.782 60.000 5.36 0.00 45.88 3.86
81 82 2.815647 CCGCTGGAAGACGAAGCC 60.816 66.667 0.00 0.00 35.93 4.35
82 83 2.048222 CGCTGGAAGACGAAGCCA 60.048 61.111 0.00 0.00 35.93 4.75
83 84 1.667830 CGCTGGAAGACGAAGCCAA 60.668 57.895 0.00 0.00 35.93 4.52
84 85 1.630244 CGCTGGAAGACGAAGCCAAG 61.630 60.000 0.00 0.00 35.93 3.61
85 86 0.603975 GCTGGAAGACGAAGCCAAGT 60.604 55.000 0.00 0.00 34.07 3.16
86 87 1.151668 CTGGAAGACGAAGCCAAGTG 58.848 55.000 0.00 0.00 34.07 3.16
87 88 0.468226 TGGAAGACGAAGCCAAGTGT 59.532 50.000 0.00 0.00 0.00 3.55
88 89 1.134220 TGGAAGACGAAGCCAAGTGTT 60.134 47.619 0.00 0.00 0.00 3.32
89 90 1.264288 GGAAGACGAAGCCAAGTGTTG 59.736 52.381 0.00 0.00 0.00 3.33
90 91 2.210116 GAAGACGAAGCCAAGTGTTGA 58.790 47.619 0.00 0.00 0.00 3.18
91 92 1.583054 AGACGAAGCCAAGTGTTGAC 58.417 50.000 0.00 0.00 0.00 3.18
92 93 0.586802 GACGAAGCCAAGTGTTGACC 59.413 55.000 0.00 0.00 0.00 4.02
93 94 0.180406 ACGAAGCCAAGTGTTGACCT 59.820 50.000 0.00 0.00 0.00 3.85
94 95 0.588252 CGAAGCCAAGTGTTGACCTG 59.412 55.000 0.00 0.00 0.00 4.00
95 96 0.312102 GAAGCCAAGTGTTGACCTGC 59.688 55.000 0.00 0.00 0.00 4.85
96 97 0.395586 AAGCCAAGTGTTGACCTGCA 60.396 50.000 0.00 0.00 0.00 4.41
97 98 0.395586 AGCCAAGTGTTGACCTGCAA 60.396 50.000 0.00 0.00 0.00 4.08
98 99 0.031178 GCCAAGTGTTGACCTGCAAG 59.969 55.000 0.00 0.00 37.12 4.01
99 100 1.392589 CCAAGTGTTGACCTGCAAGT 58.607 50.000 0.00 0.00 37.12 3.16
100 101 1.066002 CCAAGTGTTGACCTGCAAGTG 59.934 52.381 0.00 0.00 37.12 3.16
101 102 0.740737 AAGTGTTGACCTGCAAGTGC 59.259 50.000 0.00 0.00 37.12 4.40
111 112 4.272100 GCAAGTGCAAGGCAATGG 57.728 55.556 0.00 0.00 41.47 3.16
112 113 2.030958 GCAAGTGCAAGGCAATGGC 61.031 57.895 2.05 2.05 45.89 4.40
113 114 1.669440 CAAGTGCAAGGCAATGGCT 59.331 52.632 2.53 2.53 41.47 4.75
114 115 0.889994 CAAGTGCAAGGCAATGGCTA 59.110 50.000 10.45 0.00 41.47 3.93
115 116 1.479323 CAAGTGCAAGGCAATGGCTAT 59.521 47.619 10.45 0.00 41.47 2.97
116 117 1.856629 AGTGCAAGGCAATGGCTATT 58.143 45.000 10.45 0.00 41.47 1.73
117 118 1.479323 AGTGCAAGGCAATGGCTATTG 59.521 47.619 17.76 17.76 45.17 1.90
118 119 1.477700 GTGCAAGGCAATGGCTATTGA 59.522 47.619 25.24 1.30 45.21 2.57
126 127 4.645535 GGCAATGGCTATTGACTGATAGA 58.354 43.478 25.24 0.00 46.72 1.98
127 128 5.251764 GGCAATGGCTATTGACTGATAGAT 58.748 41.667 25.24 0.00 46.72 1.98
128 129 5.709164 GGCAATGGCTATTGACTGATAGATT 59.291 40.000 25.24 0.00 46.72 2.40
129 130 6.349115 GGCAATGGCTATTGACTGATAGATTG 60.349 42.308 25.24 0.00 46.72 2.67
130 131 6.206243 GCAATGGCTATTGACTGATAGATTGT 59.794 38.462 25.24 0.00 45.21 2.71
131 132 7.582352 CAATGGCTATTGACTGATAGATTGTG 58.418 38.462 17.22 0.00 45.21 3.33
132 133 6.484364 TGGCTATTGACTGATAGATTGTGA 57.516 37.500 0.00 0.00 32.48 3.58
133 134 6.888105 TGGCTATTGACTGATAGATTGTGAA 58.112 36.000 0.00 0.00 32.48 3.18
134 135 7.512130 TGGCTATTGACTGATAGATTGTGAAT 58.488 34.615 0.00 0.00 32.48 2.57
135 136 7.443272 TGGCTATTGACTGATAGATTGTGAATG 59.557 37.037 0.00 0.00 32.48 2.67
136 137 7.658982 GGCTATTGACTGATAGATTGTGAATGA 59.341 37.037 0.00 0.00 32.48 2.57
137 138 9.049523 GCTATTGACTGATAGATTGTGAATGAA 57.950 33.333 0.00 0.00 32.48 2.57
139 140 6.892310 TGACTGATAGATTGTGAATGAACG 57.108 37.500 0.00 0.00 0.00 3.95
140 141 6.630071 TGACTGATAGATTGTGAATGAACGA 58.370 36.000 0.00 0.00 0.00 3.85
141 142 7.096551 TGACTGATAGATTGTGAATGAACGAA 58.903 34.615 0.00 0.00 0.00 3.85
142 143 7.765819 TGACTGATAGATTGTGAATGAACGAAT 59.234 33.333 0.00 0.00 0.00 3.34
143 144 8.498054 ACTGATAGATTGTGAATGAACGAATT 57.502 30.769 0.00 0.00 0.00 2.17
144 145 8.950210 ACTGATAGATTGTGAATGAACGAATTT 58.050 29.630 0.00 0.00 0.00 1.82
149 150 8.434870 AGATTGTGAATGAACGAATTTAAACG 57.565 30.769 0.00 0.00 0.00 3.60
150 151 8.286800 AGATTGTGAATGAACGAATTTAAACGA 58.713 29.630 5.34 0.00 0.00 3.85
151 152 7.597643 TTGTGAATGAACGAATTTAAACGAC 57.402 32.000 5.34 0.96 0.00 4.34
152 153 6.716438 TGTGAATGAACGAATTTAAACGACA 58.284 32.000 5.34 5.62 0.00 4.35
153 154 6.848800 TGTGAATGAACGAATTTAAACGACAG 59.151 34.615 5.34 0.00 0.00 3.51
154 155 6.302313 GTGAATGAACGAATTTAAACGACAGG 59.698 38.462 5.34 0.00 0.00 4.00
155 156 4.136517 TGAACGAATTTAAACGACAGGC 57.863 40.909 5.34 0.00 0.00 4.85
157 158 1.136169 ACGAATTTAAACGACAGGCGC 60.136 47.619 0.00 0.00 46.04 6.53
158 159 1.127951 CGAATTTAAACGACAGGCGCT 59.872 47.619 7.64 0.00 46.04 5.92
159 160 2.346244 CGAATTTAAACGACAGGCGCTA 59.654 45.455 7.64 0.00 46.04 4.26
160 161 3.667050 GAATTTAAACGACAGGCGCTAC 58.333 45.455 7.64 0.00 46.04 3.58
161 162 2.151881 TTTAAACGACAGGCGCTACA 57.848 45.000 7.64 0.00 46.04 2.74
162 163 2.373540 TTAAACGACAGGCGCTACAT 57.626 45.000 7.64 0.00 46.04 2.29
163 164 1.635844 TAAACGACAGGCGCTACATG 58.364 50.000 7.64 4.04 46.04 3.21
164 165 0.320421 AAACGACAGGCGCTACATGT 60.320 50.000 7.64 2.69 46.04 3.21
165 166 0.528924 AACGACAGGCGCTACATGTA 59.471 50.000 7.64 5.25 46.04 2.29
166 167 0.744874 ACGACAGGCGCTACATGTAT 59.255 50.000 7.64 0.00 46.04 2.29
167 168 1.136305 ACGACAGGCGCTACATGTATT 59.864 47.619 7.64 0.00 46.04 1.89
168 169 2.201732 CGACAGGCGCTACATGTATTT 58.798 47.619 7.64 0.00 0.00 1.40
169 170 2.218759 CGACAGGCGCTACATGTATTTC 59.781 50.000 7.64 0.00 0.00 2.17
170 171 2.201732 ACAGGCGCTACATGTATTTCG 58.798 47.619 7.64 11.23 0.00 3.46
171 172 2.159156 ACAGGCGCTACATGTATTTCGA 60.159 45.455 19.68 0.00 0.00 3.71
172 173 3.059884 CAGGCGCTACATGTATTTCGAT 58.940 45.455 19.68 9.19 0.00 3.59
173 174 3.121944 CAGGCGCTACATGTATTTCGATC 59.878 47.826 19.68 13.04 0.00 3.69
174 175 3.057019 GGCGCTACATGTATTTCGATCA 58.943 45.455 19.68 0.00 0.00 2.92
175 176 3.493129 GGCGCTACATGTATTTCGATCAA 59.507 43.478 19.68 0.00 0.00 2.57
176 177 4.025229 GGCGCTACATGTATTTCGATCAAA 60.025 41.667 19.68 0.00 0.00 2.69
177 178 5.498159 GCGCTACATGTATTTCGATCAAAA 58.502 37.500 19.68 0.00 0.00 2.44
178 179 5.392585 GCGCTACATGTATTTCGATCAAAAC 59.607 40.000 19.68 3.73 0.00 2.43
179 180 5.611596 CGCTACATGTATTTCGATCAAAACG 59.388 40.000 5.91 0.00 0.00 3.60
180 181 6.507299 CGCTACATGTATTTCGATCAAAACGA 60.507 38.462 5.91 0.00 37.99 3.85
181 182 7.177407 GCTACATGTATTTCGATCAAAACGAA 58.823 34.615 5.91 0.00 45.65 3.85
182 183 7.850982 GCTACATGTATTTCGATCAAAACGAAT 59.149 33.333 5.91 0.00 46.34 3.34
191 192 8.844441 TTTCGATCAAAACGAATAAAACTTGT 57.156 26.923 0.00 0.00 46.34 3.16
192 193 7.830217 TCGATCAAAACGAATAAAACTTGTG 57.170 32.000 0.00 0.00 36.84 3.33
193 194 7.631822 TCGATCAAAACGAATAAAACTTGTGA 58.368 30.769 0.00 0.00 36.84 3.58
194 195 8.123575 TCGATCAAAACGAATAAAACTTGTGAA 58.876 29.630 0.00 0.00 36.84 3.18
195 196 8.901748 CGATCAAAACGAATAAAACTTGTGAAT 58.098 29.630 0.00 0.00 0.00 2.57
198 199 9.796120 TCAAAACGAATAAAACTTGTGAATTCT 57.204 25.926 7.05 0.00 0.00 2.40
203 204 9.840427 ACGAATAAAACTTGTGAATTCTATTGG 57.160 29.630 7.05 4.15 0.00 3.16
204 205 9.840427 CGAATAAAACTTGTGAATTCTATTGGT 57.160 29.630 7.05 0.00 0.00 3.67
208 209 8.647143 AAAACTTGTGAATTCTATTGGTTGTG 57.353 30.769 7.05 0.00 0.00 3.33
209 210 7.581213 AACTTGTGAATTCTATTGGTTGTGA 57.419 32.000 7.05 0.00 0.00 3.58
210 211 7.206981 ACTTGTGAATTCTATTGGTTGTGAG 57.793 36.000 7.05 0.00 0.00 3.51
211 212 6.207417 ACTTGTGAATTCTATTGGTTGTGAGG 59.793 38.462 7.05 0.00 0.00 3.86
212 213 4.458989 TGTGAATTCTATTGGTTGTGAGGC 59.541 41.667 7.05 0.00 0.00 4.70
213 214 4.702131 GTGAATTCTATTGGTTGTGAGGCT 59.298 41.667 7.05 0.00 0.00 4.58
214 215 4.943705 TGAATTCTATTGGTTGTGAGGCTC 59.056 41.667 7.79 7.79 0.00 4.70
215 216 4.851639 ATTCTATTGGTTGTGAGGCTCT 57.148 40.909 16.72 0.00 0.00 4.09
216 217 4.640771 TTCTATTGGTTGTGAGGCTCTT 57.359 40.909 16.72 0.00 0.00 2.85
217 218 5.755409 TTCTATTGGTTGTGAGGCTCTTA 57.245 39.130 16.72 1.37 0.00 2.10
218 219 5.957771 TCTATTGGTTGTGAGGCTCTTAT 57.042 39.130 16.72 1.69 0.00 1.73
219 220 5.674525 TCTATTGGTTGTGAGGCTCTTATG 58.325 41.667 16.72 0.00 0.00 1.90
220 221 3.788227 TTGGTTGTGAGGCTCTTATGT 57.212 42.857 16.72 0.00 0.00 2.29
221 222 3.788227 TGGTTGTGAGGCTCTTATGTT 57.212 42.857 16.72 0.00 0.00 2.71
222 223 3.411446 TGGTTGTGAGGCTCTTATGTTG 58.589 45.455 16.72 0.00 0.00 3.33
223 224 3.181445 TGGTTGTGAGGCTCTTATGTTGT 60.181 43.478 16.72 0.00 0.00 3.32
224 225 3.821033 GGTTGTGAGGCTCTTATGTTGTT 59.179 43.478 16.72 0.00 0.00 2.83
225 226 5.001232 GGTTGTGAGGCTCTTATGTTGTTA 58.999 41.667 16.72 0.00 0.00 2.41
226 227 5.648092 GGTTGTGAGGCTCTTATGTTGTTAT 59.352 40.000 16.72 0.00 0.00 1.89
227 228 6.151144 GGTTGTGAGGCTCTTATGTTGTTATT 59.849 38.462 16.72 0.00 0.00 1.40
228 229 6.741992 TGTGAGGCTCTTATGTTGTTATTG 57.258 37.500 16.72 0.00 0.00 1.90
229 230 6.472016 TGTGAGGCTCTTATGTTGTTATTGA 58.528 36.000 16.72 0.00 0.00 2.57
230 231 7.112122 TGTGAGGCTCTTATGTTGTTATTGAT 58.888 34.615 16.72 0.00 0.00 2.57
231 232 7.611467 TGTGAGGCTCTTATGTTGTTATTGATT 59.389 33.333 16.72 0.00 0.00 2.57
232 233 7.912250 GTGAGGCTCTTATGTTGTTATTGATTG 59.088 37.037 16.72 0.00 0.00 2.67
233 234 7.611467 TGAGGCTCTTATGTTGTTATTGATTGT 59.389 33.333 16.72 0.00 0.00 2.71
234 235 7.989826 AGGCTCTTATGTTGTTATTGATTGTC 58.010 34.615 0.00 0.00 0.00 3.18
235 236 7.611467 AGGCTCTTATGTTGTTATTGATTGTCA 59.389 33.333 0.00 0.00 0.00 3.58
236 237 8.243426 GGCTCTTATGTTGTTATTGATTGTCAA 58.757 33.333 0.00 0.00 41.09 3.18
299 300 9.855021 TTATTGATTCATCATTCATGCATGATC 57.145 29.630 29.13 20.21 41.20 2.92
300 301 6.892658 TGATTCATCATTCATGCATGATCA 57.107 33.333 29.13 22.36 41.20 2.92
301 302 7.466746 TGATTCATCATTCATGCATGATCAT 57.533 32.000 29.13 18.06 41.20 2.45
302 303 7.538575 TGATTCATCATTCATGCATGATCATC 58.461 34.615 29.13 18.59 41.20 2.92
303 304 5.897377 TCATCATTCATGCATGATCATCC 57.103 39.130 29.13 0.00 41.20 3.51
304 305 4.705023 TCATCATTCATGCATGATCATCCC 59.295 41.667 29.13 0.41 41.20 3.85
305 306 4.107127 TCATTCATGCATGATCATCCCA 57.893 40.909 29.13 13.50 36.56 4.37
306 307 4.475345 TCATTCATGCATGATCATCCCAA 58.525 39.130 29.13 12.75 36.56 4.12
307 308 4.279922 TCATTCATGCATGATCATCCCAAC 59.720 41.667 29.13 0.00 36.56 3.77
308 309 3.588210 TCATGCATGATCATCCCAACT 57.412 42.857 25.42 0.00 0.00 3.16
309 310 3.905968 TCATGCATGATCATCCCAACTT 58.094 40.909 25.42 0.00 0.00 2.66
310 311 3.634910 TCATGCATGATCATCCCAACTTG 59.365 43.478 25.42 2.52 0.00 3.16
311 312 3.090210 TGCATGATCATCCCAACTTGT 57.910 42.857 4.86 0.00 0.00 3.16
312 313 4.233632 TGCATGATCATCCCAACTTGTA 57.766 40.909 4.86 0.00 0.00 2.41
313 314 3.947196 TGCATGATCATCCCAACTTGTAC 59.053 43.478 4.86 0.00 0.00 2.90
314 315 3.947196 GCATGATCATCCCAACTTGTACA 59.053 43.478 4.86 0.00 0.00 2.90
315 316 4.201950 GCATGATCATCCCAACTTGTACAC 60.202 45.833 4.86 0.00 0.00 2.90
316 317 4.632327 TGATCATCCCAACTTGTACACA 57.368 40.909 0.00 0.00 0.00 3.72
317 318 4.979335 TGATCATCCCAACTTGTACACAA 58.021 39.130 0.00 0.00 0.00 3.33
318 319 4.759693 TGATCATCCCAACTTGTACACAAC 59.240 41.667 0.00 0.00 0.00 3.32
319 320 4.157849 TCATCCCAACTTGTACACAACA 57.842 40.909 0.00 0.00 35.88 3.33
320 321 3.880490 TCATCCCAACTTGTACACAACAC 59.120 43.478 0.00 0.00 38.00 3.32
321 322 3.351794 TCCCAACTTGTACACAACACA 57.648 42.857 0.00 0.00 38.00 3.72
322 323 3.892284 TCCCAACTTGTACACAACACAT 58.108 40.909 0.00 0.00 38.00 3.21
323 324 3.629855 TCCCAACTTGTACACAACACATG 59.370 43.478 0.00 0.00 38.00 3.21
324 325 3.371168 CCAACTTGTACACAACACATGC 58.629 45.455 0.00 0.00 38.00 4.06
325 326 3.181492 CCAACTTGTACACAACACATGCA 60.181 43.478 0.00 0.00 38.00 3.96
326 327 4.499526 CCAACTTGTACACAACACATGCAT 60.500 41.667 0.00 0.00 38.00 3.96
327 328 4.227512 ACTTGTACACAACACATGCATG 57.772 40.909 25.09 25.09 38.00 4.06
328 329 2.702898 TGTACACAACACATGCATGC 57.297 45.000 26.53 11.82 31.43 4.06
329 330 1.952296 TGTACACAACACATGCATGCA 59.048 42.857 26.53 25.04 31.43 3.96
330 331 2.557490 TGTACACAACACATGCATGCAT 59.443 40.909 27.46 27.46 32.75 3.96
331 332 2.357327 ACACAACACATGCATGCATC 57.643 45.000 30.07 0.00 33.90 3.91
332 333 1.890489 ACACAACACATGCATGCATCT 59.110 42.857 30.07 16.91 33.90 2.90
333 334 2.094906 ACACAACACATGCATGCATCTC 60.095 45.455 30.07 0.00 33.90 2.75
334 335 1.475280 ACAACACATGCATGCATCTCC 59.525 47.619 30.07 0.00 33.90 3.71
335 336 1.749063 CAACACATGCATGCATCTCCT 59.251 47.619 30.07 12.58 33.90 3.69
336 337 2.946990 CAACACATGCATGCATCTCCTA 59.053 45.455 30.07 1.47 33.90 2.94
337 338 2.847441 ACACATGCATGCATCTCCTAG 58.153 47.619 30.07 19.46 33.90 3.02
338 339 1.535896 CACATGCATGCATCTCCTAGC 59.464 52.381 30.07 0.00 33.90 3.42
348 349 2.524306 CATCTCCTAGCCCGAGAGATT 58.476 52.381 5.89 0.00 43.23 2.40
349 350 1.988293 TCTCCTAGCCCGAGAGATTG 58.012 55.000 0.00 0.00 31.80 2.67
381 387 3.139957 TGCTATTATTCCCTGCATTCCCA 59.860 43.478 0.00 0.00 0.00 4.37
388 394 0.918983 CCCTGCATTCCCACCTCTTA 59.081 55.000 0.00 0.00 0.00 2.10
389 395 1.496429 CCCTGCATTCCCACCTCTTAT 59.504 52.381 0.00 0.00 0.00 1.73
390 396 2.579873 CCTGCATTCCCACCTCTTATG 58.420 52.381 0.00 0.00 0.00 1.90
493 499 5.683876 ATAACTGGCTAAGAAGAGCTTCA 57.316 39.130 12.32 0.00 42.43 3.02
494 500 4.566426 AACTGGCTAAGAAGAGCTTCAT 57.434 40.909 12.32 3.35 42.43 2.57
495 501 4.566426 ACTGGCTAAGAAGAGCTTCATT 57.434 40.909 12.32 6.59 42.43 2.57
496 502 4.512484 ACTGGCTAAGAAGAGCTTCATTC 58.488 43.478 12.32 0.00 42.43 2.67
561 567 1.667830 GGCTTTGCCTTTTTCGGGC 60.668 57.895 0.73 0.00 46.69 6.13
639 645 6.154203 TGAGATTCAGATTCGATTACAGCT 57.846 37.500 0.00 0.00 0.00 4.24
640 646 7.277174 TGAGATTCAGATTCGATTACAGCTA 57.723 36.000 0.00 0.00 0.00 3.32
641 647 7.366513 TGAGATTCAGATTCGATTACAGCTAG 58.633 38.462 0.00 0.00 0.00 3.42
642 648 6.155827 AGATTCAGATTCGATTACAGCTAGC 58.844 40.000 6.62 6.62 0.00 3.42
644 650 3.315470 TCAGATTCGATTACAGCTAGCGT 59.685 43.478 9.55 12.78 0.00 5.07
645 651 4.045104 CAGATTCGATTACAGCTAGCGTT 58.955 43.478 15.48 6.90 0.00 4.84
648 654 0.577269 CGATTACAGCTAGCGTTGGC 59.423 55.000 15.48 0.00 40.37 4.52
649 655 1.651987 GATTACAGCTAGCGTTGGCA 58.348 50.000 10.70 0.00 43.41 4.92
650 656 1.594862 GATTACAGCTAGCGTTGGCAG 59.405 52.381 10.70 4.23 43.41 4.85
651 657 0.391130 TTACAGCTAGCGTTGGCAGG 60.391 55.000 10.70 4.11 43.41 4.85
714 720 2.293170 TCGACATGAACAAAACAGCCA 58.707 42.857 0.00 0.00 0.00 4.75
727 733 0.615850 ACAGCCAGGTAAGAAGAGCC 59.384 55.000 0.00 0.00 0.00 4.70
776 793 2.811792 GCACAATGCGTCAAATGCA 58.188 47.368 0.00 0.00 45.17 3.96
787 804 1.135721 GTCAAATGCAGCTGGGGATTC 59.864 52.381 17.12 0.00 0.00 2.52
823 848 5.340803 TCGTTTCTCAGGATCATAAGAACG 58.659 41.667 0.00 1.40 0.00 3.95
824 849 5.124936 TCGTTTCTCAGGATCATAAGAACGA 59.875 40.000 11.38 11.38 33.36 3.85
849 874 2.194271 CGCTTCTCGTAATCCTGGTTC 58.806 52.381 0.00 0.00 0.00 3.62
853 878 2.022195 TCTCGTAATCCTGGTTCGAGG 58.978 52.381 21.21 0.00 44.99 4.63
865 890 4.003648 CTGGTTCGAGGCCATAATTATCC 58.996 47.826 5.01 0.00 35.19 2.59
917 943 1.918262 TCTGCCCACCTTGATTCAGAT 59.082 47.619 0.00 0.00 0.00 2.90
918 944 2.309755 TCTGCCCACCTTGATTCAGATT 59.690 45.455 0.00 0.00 0.00 2.40
919 945 3.094572 CTGCCCACCTTGATTCAGATTT 58.905 45.455 0.00 0.00 0.00 2.17
920 946 3.091545 TGCCCACCTTGATTCAGATTTC 58.908 45.455 0.00 0.00 0.00 2.17
921 947 3.091545 GCCCACCTTGATTCAGATTTCA 58.908 45.455 0.00 0.00 0.00 2.69
923 949 4.592942 CCCACCTTGATTCAGATTTCAGA 58.407 43.478 0.00 0.00 0.00 3.27
924 950 5.012239 CCCACCTTGATTCAGATTTCAGAA 58.988 41.667 0.00 0.00 0.00 3.02
926 952 5.105997 CCACCTTGATTCAGATTTCAGAACC 60.106 44.000 0.00 0.00 0.00 3.62
927 953 5.474532 CACCTTGATTCAGATTTCAGAACCA 59.525 40.000 0.00 0.00 0.00 3.67
928 954 5.474876 ACCTTGATTCAGATTTCAGAACCAC 59.525 40.000 0.00 0.00 0.00 4.16
929 955 5.391310 CCTTGATTCAGATTTCAGAACCACG 60.391 44.000 0.00 0.00 0.00 4.94
930 956 3.436704 TGATTCAGATTTCAGAACCACGC 59.563 43.478 0.00 0.00 0.00 5.34
931 957 2.839486 TCAGATTTCAGAACCACGCT 57.161 45.000 0.00 0.00 0.00 5.07
932 958 2.416747 TCAGATTTCAGAACCACGCTG 58.583 47.619 0.00 0.00 34.71 5.18
933 959 2.037121 TCAGATTTCAGAACCACGCTGA 59.963 45.455 0.00 0.00 40.41 4.26
935 961 2.037772 AGATTTCAGAACCACGCTGACT 59.962 45.455 0.00 0.00 41.72 3.41
936 962 2.325583 TTTCAGAACCACGCTGACTT 57.674 45.000 0.00 0.00 41.72 3.01
937 963 3.462483 TTTCAGAACCACGCTGACTTA 57.538 42.857 0.00 0.00 41.72 2.24
942 968 1.732259 GAACCACGCTGACTTACATGG 59.268 52.381 0.00 0.00 33.73 3.66
952 978 3.028130 TGACTTACATGGTCCGCATCTA 58.972 45.455 0.00 0.00 33.22 1.98
1071 1101 6.939132 ATAATGAACTTGCAGGAATCTGAG 57.061 37.500 1.40 0.00 43.49 3.35
1084 1117 5.296283 CAGGAATCTGAGTCCATGTTCATTC 59.704 44.000 24.35 0.00 43.49 2.67
1094 1127 4.701651 GTCCATGTTCATTCACTCATTCCA 59.298 41.667 0.00 0.00 0.00 3.53
1132 1168 3.450457 ACATGATCCTCCTCTGTTCTGTC 59.550 47.826 0.00 0.00 0.00 3.51
1249 1286 1.400142 CGCCGCACCATCAAGAAAATA 59.600 47.619 0.00 0.00 0.00 1.40
1300 5271 1.453155 ATTCCACGCCTGTTCATGTC 58.547 50.000 0.00 0.00 0.00 3.06
1310 5282 2.362736 CTGTTCATGTCATGGGGAGTG 58.637 52.381 12.90 0.00 0.00 3.51
1314 5286 1.984424 TCATGTCATGGGGAGTGAACA 59.016 47.619 12.90 0.00 0.00 3.18
1315 5287 2.086869 CATGTCATGGGGAGTGAACAC 58.913 52.381 4.78 0.00 0.00 3.32
1358 5330 2.971452 GTGGAGACGGTGGAGGTC 59.029 66.667 0.00 0.00 34.62 3.85
1361 5333 1.975407 GGAGACGGTGGAGGTCGAA 60.975 63.158 0.00 0.00 39.38 3.71
1367 5339 1.295746 GGTGGAGGTCGAAAGGGAC 59.704 63.158 0.00 0.00 36.18 4.46
1469 5441 3.447025 GATTCTGCCTCCGGACCCG 62.447 68.421 0.00 0.66 39.44 5.28
1502 5474 1.905215 CAGGAGGAAGAGAAGCAGGAA 59.095 52.381 0.00 0.00 0.00 3.36
1507 5479 0.391793 GAAGAGAAGCAGGAACCCGG 60.392 60.000 0.00 0.00 0.00 5.73
1532 5504 0.822164 ATGCTTACGCTCCTTACGGT 59.178 50.000 0.00 0.00 36.97 4.83
1533 5505 0.604578 TGCTTACGCTCCTTACGGTT 59.395 50.000 0.00 0.00 36.97 4.44
1534 5506 1.818060 TGCTTACGCTCCTTACGGTTA 59.182 47.619 0.00 0.00 36.97 2.85
1574 5546 1.204941 GACATGGACGCTGTTCTAGGT 59.795 52.381 0.00 0.00 0.00 3.08
1577 5549 3.451178 ACATGGACGCTGTTCTAGGTAAT 59.549 43.478 0.00 0.00 0.00 1.89
1691 5663 0.834612 ATCTGATTTCGGGGCGGTAA 59.165 50.000 0.00 0.00 0.00 2.85
1713 5685 7.393515 GGTAATATGTGTTTTCCTTGGTTCTCT 59.606 37.037 0.00 0.00 0.00 3.10
1721 5693 8.847196 GTGTTTTCCTTGGTTCTCTTAAGTTAT 58.153 33.333 1.63 0.00 0.00 1.89
1722 5694 9.416284 TGTTTTCCTTGGTTCTCTTAAGTTATT 57.584 29.630 1.63 0.00 0.00 1.40
1894 5910 3.071602 ACTGACATTTCTACAGGTGCAGT 59.928 43.478 0.00 0.00 36.17 4.40
1898 5914 5.643348 TGACATTTCTACAGGTGCAGTATTG 59.357 40.000 0.00 0.00 0.00 1.90
1911 5927 4.994852 GTGCAGTATTGTTTCCTGAGTACA 59.005 41.667 0.00 0.00 0.00 2.90
1912 5928 5.120830 GTGCAGTATTGTTTCCTGAGTACAG 59.879 44.000 0.00 0.00 43.12 2.74
1986 6113 3.909995 TGGGATGGAGGGAGTATTACATG 59.090 47.826 0.00 0.00 0.00 3.21
1988 6115 4.351111 GGGATGGAGGGAGTATTACATGTT 59.649 45.833 2.30 0.00 0.00 2.71
2114 6265 5.523916 ACAAGCACTGAACAGTACTAACTTG 59.476 40.000 19.55 19.55 40.20 3.16
2170 6324 6.058183 GGTGTCTCCATGCTAACAGAAATAT 58.942 40.000 0.00 0.00 35.97 1.28
2187 6341 6.753279 CAGAAATATTGCACATTCCGAACATT 59.247 34.615 0.00 0.00 0.00 2.71
2191 6345 3.281341 TGCACATTCCGAACATTTGAC 57.719 42.857 0.00 0.00 0.00 3.18
2275 6453 0.323816 AGATCTGTCTCCACGAGCCA 60.324 55.000 0.00 0.00 0.00 4.75
2341 6526 5.032863 GCAGATGTGTGCATTACTGAATTC 58.967 41.667 0.00 0.00 43.41 2.17
2406 6591 9.587772 ACACTACACTGAATGTCTTCAATATAC 57.412 33.333 0.00 0.00 42.09 1.47
2407 6592 8.746751 CACTACACTGAATGTCTTCAATATACG 58.253 37.037 0.00 0.00 42.09 3.06
2408 6593 8.467598 ACTACACTGAATGTCTTCAATATACGT 58.532 33.333 0.00 0.00 42.09 3.57
2538 6728 1.195900 CAAACATTACACGTGGACCCG 59.804 52.381 21.57 4.53 0.00 5.28
2583 6779 2.693797 AAAAATGTCGTCTGCTGCAG 57.306 45.000 23.31 23.31 0.00 4.41
2587 6783 2.967599 ATGTCGTCTGCTGCAGATAA 57.032 45.000 32.45 21.24 42.73 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.512516 GTGGCCAGCATCTTCGGC 61.513 66.667 5.11 0.00 45.47 5.54
4 5 3.197790 CGTGGCCAGCATCTTCGG 61.198 66.667 5.11 0.00 0.00 4.30
5 6 3.197790 CCGTGGCCAGCATCTTCG 61.198 66.667 5.11 3.69 0.00 3.79
6 7 2.825836 CCCGTGGCCAGCATCTTC 60.826 66.667 5.11 0.00 0.00 2.87
7 8 4.431131 CCCCGTGGCCAGCATCTT 62.431 66.667 5.11 0.00 0.00 2.40
20 21 2.907897 GAAGAGCATCCACGACCCCG 62.908 65.000 0.00 0.00 37.62 5.73
21 22 1.153349 GAAGAGCATCCACGACCCC 60.153 63.158 0.00 0.00 33.66 4.95
22 23 0.460987 CTGAAGAGCATCCACGACCC 60.461 60.000 0.00 0.00 33.66 4.46
23 24 0.460987 CCTGAAGAGCATCCACGACC 60.461 60.000 0.00 0.00 33.66 4.79
24 25 0.460987 CCCTGAAGAGCATCCACGAC 60.461 60.000 0.00 0.00 33.66 4.34
25 26 1.900351 CCCTGAAGAGCATCCACGA 59.100 57.895 0.00 0.00 33.66 4.35
26 27 1.817099 GCCCTGAAGAGCATCCACG 60.817 63.158 0.00 0.00 33.66 4.94
27 28 0.833287 TAGCCCTGAAGAGCATCCAC 59.167 55.000 0.00 0.00 33.66 4.02
28 29 1.419012 CATAGCCCTGAAGAGCATCCA 59.581 52.381 0.00 0.00 33.66 3.41
29 30 1.696336 TCATAGCCCTGAAGAGCATCC 59.304 52.381 0.00 0.00 33.66 3.51
30 31 3.137533 GTTCATAGCCCTGAAGAGCATC 58.862 50.000 0.00 0.00 35.88 3.91
31 32 2.484417 CGTTCATAGCCCTGAAGAGCAT 60.484 50.000 0.00 0.00 35.88 3.79
32 33 1.134699 CGTTCATAGCCCTGAAGAGCA 60.135 52.381 0.00 0.00 35.88 4.26
33 34 1.576356 CGTTCATAGCCCTGAAGAGC 58.424 55.000 0.00 0.00 35.88 4.09
34 35 1.202580 CCCGTTCATAGCCCTGAAGAG 60.203 57.143 0.00 0.00 35.88 2.85
35 36 0.830648 CCCGTTCATAGCCCTGAAGA 59.169 55.000 0.00 0.00 35.88 2.87
36 37 0.830648 TCCCGTTCATAGCCCTGAAG 59.169 55.000 0.00 0.00 35.88 3.02
37 38 1.416401 GATCCCGTTCATAGCCCTGAA 59.584 52.381 0.00 0.00 32.84 3.02
38 39 1.048601 GATCCCGTTCATAGCCCTGA 58.951 55.000 0.00 0.00 0.00 3.86
39 40 0.035458 GGATCCCGTTCATAGCCCTG 59.965 60.000 0.00 0.00 0.00 4.45
40 41 1.128188 GGGATCCCGTTCATAGCCCT 61.128 60.000 17.02 0.00 0.00 5.19
41 42 1.375326 GGGATCCCGTTCATAGCCC 59.625 63.158 17.02 0.00 0.00 5.19
62 63 2.970639 CTTCGTCTTCCAGCGGGA 59.029 61.111 0.00 0.00 43.03 5.14
63 64 2.815647 GCTTCGTCTTCCAGCGGG 60.816 66.667 0.00 0.00 0.00 6.13
64 65 2.815647 GGCTTCGTCTTCCAGCGG 60.816 66.667 0.00 0.00 34.09 5.52
65 66 1.630244 CTTGGCTTCGTCTTCCAGCG 61.630 60.000 0.00 0.00 34.09 5.18
66 67 0.603975 ACTTGGCTTCGTCTTCCAGC 60.604 55.000 0.00 0.00 0.00 4.85
67 68 1.151668 CACTTGGCTTCGTCTTCCAG 58.848 55.000 0.00 0.00 0.00 3.86
68 69 0.468226 ACACTTGGCTTCGTCTTCCA 59.532 50.000 0.00 0.00 0.00 3.53
69 70 1.264288 CAACACTTGGCTTCGTCTTCC 59.736 52.381 0.00 0.00 0.00 3.46
70 71 2.032808 GTCAACACTTGGCTTCGTCTTC 60.033 50.000 0.00 0.00 31.13 2.87
71 72 1.940613 GTCAACACTTGGCTTCGTCTT 59.059 47.619 0.00 0.00 31.13 3.01
72 73 1.583054 GTCAACACTTGGCTTCGTCT 58.417 50.000 0.00 0.00 31.13 4.18
73 74 0.586802 GGTCAACACTTGGCTTCGTC 59.413 55.000 0.00 0.00 35.12 4.20
74 75 0.180406 AGGTCAACACTTGGCTTCGT 59.820 50.000 0.00 0.00 35.12 3.85
75 76 0.588252 CAGGTCAACACTTGGCTTCG 59.412 55.000 0.00 0.00 35.12 3.79
76 77 0.312102 GCAGGTCAACACTTGGCTTC 59.688 55.000 0.00 0.00 35.12 3.86
77 78 0.395586 TGCAGGTCAACACTTGGCTT 60.396 50.000 0.00 0.00 35.12 4.35
78 79 0.395586 TTGCAGGTCAACACTTGGCT 60.396 50.000 0.00 0.00 35.12 4.75
79 80 0.031178 CTTGCAGGTCAACACTTGGC 59.969 55.000 0.00 0.00 30.15 4.52
80 81 1.066002 CACTTGCAGGTCAACACTTGG 59.934 52.381 0.00 0.00 30.15 3.61
81 82 1.534595 GCACTTGCAGGTCAACACTTG 60.535 52.381 0.00 0.00 41.59 3.16
82 83 0.740737 GCACTTGCAGGTCAACACTT 59.259 50.000 0.00 0.00 41.59 3.16
83 84 2.408333 GCACTTGCAGGTCAACACT 58.592 52.632 0.00 0.00 41.59 3.55
94 95 2.030958 GCCATTGCCTTGCACTTGC 61.031 57.895 0.00 0.00 38.71 4.01
95 96 0.889994 TAGCCATTGCCTTGCACTTG 59.110 50.000 0.00 0.00 38.71 3.16
96 97 1.856629 ATAGCCATTGCCTTGCACTT 58.143 45.000 0.00 0.00 38.71 3.16
97 98 1.479323 CAATAGCCATTGCCTTGCACT 59.521 47.619 0.00 0.00 38.71 4.40
98 99 1.477700 TCAATAGCCATTGCCTTGCAC 59.522 47.619 0.00 0.00 41.21 4.57
99 100 1.477700 GTCAATAGCCATTGCCTTGCA 59.522 47.619 0.00 0.00 41.21 4.08
100 101 1.753073 AGTCAATAGCCATTGCCTTGC 59.247 47.619 0.00 0.00 41.21 4.01
101 102 3.018856 TCAGTCAATAGCCATTGCCTTG 58.981 45.455 0.00 0.00 41.21 3.61
102 103 3.370840 TCAGTCAATAGCCATTGCCTT 57.629 42.857 0.00 0.00 41.21 4.35
103 104 3.589951 ATCAGTCAATAGCCATTGCCT 57.410 42.857 0.00 0.00 41.21 4.75
104 105 4.645535 TCTATCAGTCAATAGCCATTGCC 58.354 43.478 0.00 0.00 41.21 4.52
105 106 6.206243 ACAATCTATCAGTCAATAGCCATTGC 59.794 38.462 0.00 0.00 41.21 3.56
106 107 7.443272 TCACAATCTATCAGTCAATAGCCATTG 59.557 37.037 0.00 0.00 42.55 2.82
107 108 7.512130 TCACAATCTATCAGTCAATAGCCATT 58.488 34.615 0.00 0.00 0.00 3.16
108 109 7.071069 TCACAATCTATCAGTCAATAGCCAT 57.929 36.000 0.00 0.00 0.00 4.40
109 110 6.484364 TCACAATCTATCAGTCAATAGCCA 57.516 37.500 0.00 0.00 0.00 4.75
110 111 7.658982 TCATTCACAATCTATCAGTCAATAGCC 59.341 37.037 0.00 0.00 0.00 3.93
111 112 8.599055 TCATTCACAATCTATCAGTCAATAGC 57.401 34.615 0.00 0.00 0.00 2.97
113 114 9.034544 CGTTCATTCACAATCTATCAGTCAATA 57.965 33.333 0.00 0.00 0.00 1.90
114 115 7.765819 TCGTTCATTCACAATCTATCAGTCAAT 59.234 33.333 0.00 0.00 0.00 2.57
115 116 7.096551 TCGTTCATTCACAATCTATCAGTCAA 58.903 34.615 0.00 0.00 0.00 3.18
116 117 6.630071 TCGTTCATTCACAATCTATCAGTCA 58.370 36.000 0.00 0.00 0.00 3.41
117 118 7.525688 TTCGTTCATTCACAATCTATCAGTC 57.474 36.000 0.00 0.00 0.00 3.51
118 119 8.498054 AATTCGTTCATTCACAATCTATCAGT 57.502 30.769 0.00 0.00 0.00 3.41
123 124 9.536558 CGTTTAAATTCGTTCATTCACAATCTA 57.463 29.630 0.00 0.00 0.00 1.98
124 125 8.286800 TCGTTTAAATTCGTTCATTCACAATCT 58.713 29.630 0.00 0.00 0.00 2.40
125 126 8.355806 GTCGTTTAAATTCGTTCATTCACAATC 58.644 33.333 0.00 0.00 0.00 2.67
126 127 7.858382 TGTCGTTTAAATTCGTTCATTCACAAT 59.142 29.630 0.00 0.00 0.00 2.71
127 128 7.187480 TGTCGTTTAAATTCGTTCATTCACAA 58.813 30.769 0.00 0.00 0.00 3.33
128 129 6.716438 TGTCGTTTAAATTCGTTCATTCACA 58.284 32.000 0.00 0.00 0.00 3.58
129 130 6.302313 CCTGTCGTTTAAATTCGTTCATTCAC 59.698 38.462 0.00 0.00 0.00 3.18
130 131 6.367421 CCTGTCGTTTAAATTCGTTCATTCA 58.633 36.000 0.00 0.00 0.00 2.57
131 132 5.283012 GCCTGTCGTTTAAATTCGTTCATTC 59.717 40.000 0.00 0.00 0.00 2.67
132 133 5.151389 GCCTGTCGTTTAAATTCGTTCATT 58.849 37.500 0.00 0.00 0.00 2.57
133 134 4.668177 CGCCTGTCGTTTAAATTCGTTCAT 60.668 41.667 0.00 0.00 0.00 2.57
134 135 3.363182 CGCCTGTCGTTTAAATTCGTTCA 60.363 43.478 0.00 0.00 0.00 3.18
135 136 3.150731 CGCCTGTCGTTTAAATTCGTTC 58.849 45.455 0.00 0.00 0.00 3.95
136 137 2.663606 GCGCCTGTCGTTTAAATTCGTT 60.664 45.455 0.00 0.00 41.07 3.85
137 138 1.136169 GCGCCTGTCGTTTAAATTCGT 60.136 47.619 0.00 0.00 41.07 3.85
138 139 1.127951 AGCGCCTGTCGTTTAAATTCG 59.872 47.619 2.29 0.00 41.07 3.34
139 140 2.894307 AGCGCCTGTCGTTTAAATTC 57.106 45.000 2.29 0.00 41.07 2.17
140 141 3.068560 TGTAGCGCCTGTCGTTTAAATT 58.931 40.909 2.29 0.00 41.07 1.82
141 142 2.690786 TGTAGCGCCTGTCGTTTAAAT 58.309 42.857 2.29 0.00 41.07 1.40
142 143 2.151881 TGTAGCGCCTGTCGTTTAAA 57.848 45.000 2.29 0.00 41.07 1.52
143 144 1.996898 CATGTAGCGCCTGTCGTTTAA 59.003 47.619 2.29 0.00 41.07 1.52
144 145 1.067425 ACATGTAGCGCCTGTCGTTTA 60.067 47.619 2.29 0.00 41.07 2.01
145 146 0.320421 ACATGTAGCGCCTGTCGTTT 60.320 50.000 2.29 0.00 41.07 3.60
146 147 0.528924 TACATGTAGCGCCTGTCGTT 59.471 50.000 2.29 0.00 41.07 3.85
147 148 0.744874 ATACATGTAGCGCCTGTCGT 59.255 50.000 11.91 0.00 41.07 4.34
148 149 1.852942 AATACATGTAGCGCCTGTCG 58.147 50.000 11.91 0.00 42.12 4.35
149 150 2.218759 CGAAATACATGTAGCGCCTGTC 59.781 50.000 11.91 0.00 0.00 3.51
150 151 2.159156 TCGAAATACATGTAGCGCCTGT 60.159 45.455 11.91 5.73 0.00 4.00
151 152 2.469826 TCGAAATACATGTAGCGCCTG 58.530 47.619 11.91 0.00 0.00 4.85
152 153 2.882927 TCGAAATACATGTAGCGCCT 57.117 45.000 11.91 0.00 0.00 5.52
153 154 3.057019 TGATCGAAATACATGTAGCGCC 58.943 45.455 11.91 9.99 0.00 6.53
154 155 4.708868 TTGATCGAAATACATGTAGCGC 57.291 40.909 11.91 0.00 0.00 5.92
155 156 5.611596 CGTTTTGATCGAAATACATGTAGCG 59.388 40.000 11.91 13.99 0.00 4.26
156 157 6.701937 TCGTTTTGATCGAAATACATGTAGC 58.298 36.000 11.91 2.74 34.36 3.58
168 169 7.631822 TCACAAGTTTTATTCGTTTTGATCGA 58.368 30.769 0.00 0.00 35.50 3.59
169 170 7.830217 TCACAAGTTTTATTCGTTTTGATCG 57.170 32.000 0.00 0.00 0.00 3.69
172 173 9.796120 AGAATTCACAAGTTTTATTCGTTTTGA 57.204 25.926 8.44 0.00 32.05 2.69
177 178 9.840427 CCAATAGAATTCACAAGTTTTATTCGT 57.160 29.630 8.44 0.00 32.05 3.85
178 179 9.840427 ACCAATAGAATTCACAAGTTTTATTCG 57.160 29.630 8.44 0.00 32.05 3.34
182 183 9.743057 CACAACCAATAGAATTCACAAGTTTTA 57.257 29.630 8.44 0.00 0.00 1.52
183 184 8.474025 TCACAACCAATAGAATTCACAAGTTTT 58.526 29.630 8.44 0.00 0.00 2.43
184 185 8.006298 TCACAACCAATAGAATTCACAAGTTT 57.994 30.769 8.44 0.00 0.00 2.66
185 186 7.255590 CCTCACAACCAATAGAATTCACAAGTT 60.256 37.037 8.44 2.00 0.00 2.66
186 187 6.207417 CCTCACAACCAATAGAATTCACAAGT 59.793 38.462 8.44 0.00 0.00 3.16
187 188 6.615088 CCTCACAACCAATAGAATTCACAAG 58.385 40.000 8.44 0.00 0.00 3.16
188 189 5.048083 GCCTCACAACCAATAGAATTCACAA 60.048 40.000 8.44 0.00 0.00 3.33
189 190 4.458989 GCCTCACAACCAATAGAATTCACA 59.541 41.667 8.44 0.00 0.00 3.58
190 191 4.702131 AGCCTCACAACCAATAGAATTCAC 59.298 41.667 8.44 0.00 0.00 3.18
191 192 4.922206 AGCCTCACAACCAATAGAATTCA 58.078 39.130 8.44 0.00 0.00 2.57
192 193 5.189180 AGAGCCTCACAACCAATAGAATTC 58.811 41.667 0.00 0.00 0.00 2.17
193 194 5.184892 AGAGCCTCACAACCAATAGAATT 57.815 39.130 0.00 0.00 0.00 2.17
194 195 4.851639 AGAGCCTCACAACCAATAGAAT 57.148 40.909 0.00 0.00 0.00 2.40
195 196 4.640771 AAGAGCCTCACAACCAATAGAA 57.359 40.909 0.00 0.00 0.00 2.10
196 197 5.189736 ACATAAGAGCCTCACAACCAATAGA 59.810 40.000 0.00 0.00 0.00 1.98
197 198 5.431765 ACATAAGAGCCTCACAACCAATAG 58.568 41.667 0.00 0.00 0.00 1.73
198 199 5.435686 ACATAAGAGCCTCACAACCAATA 57.564 39.130 0.00 0.00 0.00 1.90
199 200 4.307032 ACATAAGAGCCTCACAACCAAT 57.693 40.909 0.00 0.00 0.00 3.16
200 201 3.788227 ACATAAGAGCCTCACAACCAA 57.212 42.857 0.00 0.00 0.00 3.67
201 202 3.181445 ACAACATAAGAGCCTCACAACCA 60.181 43.478 0.00 0.00 0.00 3.67
202 203 3.412386 ACAACATAAGAGCCTCACAACC 58.588 45.455 0.00 0.00 0.00 3.77
203 204 6.743575 ATAACAACATAAGAGCCTCACAAC 57.256 37.500 0.00 0.00 0.00 3.32
204 205 6.939730 TCAATAACAACATAAGAGCCTCACAA 59.060 34.615 0.00 0.00 0.00 3.33
205 206 6.472016 TCAATAACAACATAAGAGCCTCACA 58.528 36.000 0.00 0.00 0.00 3.58
206 207 6.985188 TCAATAACAACATAAGAGCCTCAC 57.015 37.500 0.00 0.00 0.00 3.51
207 208 7.611467 ACAATCAATAACAACATAAGAGCCTCA 59.389 33.333 0.00 0.00 0.00 3.86
208 209 7.989826 ACAATCAATAACAACATAAGAGCCTC 58.010 34.615 0.00 0.00 0.00 4.70
209 210 7.611467 TGACAATCAATAACAACATAAGAGCCT 59.389 33.333 0.00 0.00 0.00 4.58
210 211 7.761409 TGACAATCAATAACAACATAAGAGCC 58.239 34.615 0.00 0.00 0.00 4.70
211 212 9.793252 ATTGACAATCAATAACAACATAAGAGC 57.207 29.630 2.20 0.00 44.57 4.09
273 274 9.855021 GATCATGCATGAATGATGAATCAATAA 57.145 29.630 30.33 4.37 45.27 1.40
274 275 9.019656 TGATCATGCATGAATGATGAATCAATA 57.980 29.630 30.33 4.76 45.27 1.90
275 276 7.895759 TGATCATGCATGAATGATGAATCAAT 58.104 30.769 30.33 11.67 45.27 2.57
276 277 7.283625 TGATCATGCATGAATGATGAATCAA 57.716 32.000 30.33 10.90 45.27 2.57
277 278 6.892658 TGATCATGCATGAATGATGAATCA 57.107 33.333 30.33 23.57 45.27 2.57
278 279 6.975197 GGATGATCATGCATGAATGATGAATC 59.025 38.462 30.33 27.29 45.27 2.52
279 280 6.127338 GGGATGATCATGCATGAATGATGAAT 60.127 38.462 30.33 22.56 45.27 2.57
280 281 5.185056 GGGATGATCATGCATGAATGATGAA 59.815 40.000 30.33 19.35 45.27 2.57
281 282 4.705023 GGGATGATCATGCATGAATGATGA 59.295 41.667 30.33 23.80 45.27 2.92
282 283 4.462483 TGGGATGATCATGCATGAATGATG 59.538 41.667 30.33 10.36 45.27 3.07
284 285 4.107127 TGGGATGATCATGCATGAATGA 57.893 40.909 31.79 18.93 40.69 2.57
285 286 4.280929 AGTTGGGATGATCATGCATGAATG 59.719 41.667 31.79 7.43 40.69 2.67
286 287 4.480115 AGTTGGGATGATCATGCATGAAT 58.520 39.130 31.79 21.85 40.69 2.57
287 288 3.905968 AGTTGGGATGATCATGCATGAA 58.094 40.909 31.79 17.98 40.69 2.57
288 289 3.588210 AGTTGGGATGATCATGCATGA 57.412 42.857 30.47 30.47 41.70 3.07
289 290 3.383505 ACAAGTTGGGATGATCATGCATG 59.616 43.478 26.07 21.07 0.00 4.06
290 291 3.638860 ACAAGTTGGGATGATCATGCAT 58.361 40.909 26.07 8.30 0.00 3.96
291 292 3.090210 ACAAGTTGGGATGATCATGCA 57.910 42.857 26.07 11.48 0.00 3.96
292 293 3.947196 TGTACAAGTTGGGATGATCATGC 59.053 43.478 18.22 18.22 0.00 4.06
293 294 4.943093 TGTGTACAAGTTGGGATGATCATG 59.057 41.667 14.30 0.00 0.00 3.07
294 295 5.178096 TGTGTACAAGTTGGGATGATCAT 57.822 39.130 8.25 8.25 0.00 2.45
295 296 4.632327 TGTGTACAAGTTGGGATGATCA 57.368 40.909 7.96 0.00 0.00 2.92
296 297 4.759693 TGTTGTGTACAAGTTGGGATGATC 59.240 41.667 7.96 0.00 36.39 2.92
297 298 4.518970 GTGTTGTGTACAAGTTGGGATGAT 59.481 41.667 7.96 0.00 38.80 2.45
298 299 3.880490 GTGTTGTGTACAAGTTGGGATGA 59.120 43.478 7.96 0.00 38.80 2.92
299 300 3.629855 TGTGTTGTGTACAAGTTGGGATG 59.370 43.478 7.96 0.00 38.80 3.51
300 301 3.892284 TGTGTTGTGTACAAGTTGGGAT 58.108 40.909 7.96 0.00 38.80 3.85
301 302 3.351794 TGTGTTGTGTACAAGTTGGGA 57.648 42.857 7.96 0.00 38.80 4.37
302 303 3.795150 GCATGTGTTGTGTACAAGTTGGG 60.795 47.826 7.96 0.00 38.80 4.12
303 304 3.181492 TGCATGTGTTGTGTACAAGTTGG 60.181 43.478 7.96 0.00 38.80 3.77
304 305 4.026293 TGCATGTGTTGTGTACAAGTTG 57.974 40.909 0.00 0.00 38.80 3.16
305 306 4.609947 CATGCATGTGTTGTGTACAAGTT 58.390 39.130 18.91 0.00 38.80 2.66
306 307 3.550639 GCATGCATGTGTTGTGTACAAGT 60.551 43.478 26.79 0.00 38.80 3.16
307 308 2.981805 GCATGCATGTGTTGTGTACAAG 59.018 45.455 26.79 0.00 38.80 3.16
308 309 2.360165 TGCATGCATGTGTTGTGTACAA 59.640 40.909 26.79 0.00 38.80 2.41
309 310 1.952296 TGCATGCATGTGTTGTGTACA 59.048 42.857 26.79 10.74 0.00 2.90
310 311 2.702898 TGCATGCATGTGTTGTGTAC 57.297 45.000 26.79 8.24 0.00 2.90
311 312 3.083293 AGATGCATGCATGTGTTGTGTA 58.917 40.909 36.73 2.75 36.70 2.90
312 313 1.890489 AGATGCATGCATGTGTTGTGT 59.110 42.857 36.73 11.45 36.70 3.72
313 314 2.526077 GAGATGCATGCATGTGTTGTG 58.474 47.619 36.73 2.44 36.70 3.33
314 315 1.475280 GGAGATGCATGCATGTGTTGT 59.525 47.619 36.73 13.06 36.70 3.32
315 316 1.749063 AGGAGATGCATGCATGTGTTG 59.251 47.619 36.73 4.04 36.70 3.33
316 317 2.139323 AGGAGATGCATGCATGTGTT 57.861 45.000 36.73 19.50 36.70 3.32
317 318 2.847441 CTAGGAGATGCATGCATGTGT 58.153 47.619 36.73 22.94 36.70 3.72
318 319 1.535896 GCTAGGAGATGCATGCATGTG 59.464 52.381 36.73 21.04 36.70 3.21
319 320 1.544982 GGCTAGGAGATGCATGCATGT 60.545 52.381 36.73 32.63 36.70 3.21
320 321 1.166129 GGCTAGGAGATGCATGCATG 58.834 55.000 36.73 22.70 36.70 4.06
321 322 0.037877 GGGCTAGGAGATGCATGCAT 59.962 55.000 32.66 32.66 39.69 3.96
322 323 1.453235 GGGCTAGGAGATGCATGCA 59.547 57.895 25.04 25.04 0.00 3.96
323 324 1.670406 CGGGCTAGGAGATGCATGC 60.670 63.158 11.82 11.82 0.00 4.06
324 325 0.037512 CTCGGGCTAGGAGATGCATG 60.038 60.000 2.46 0.00 33.27 4.06
325 326 0.178950 TCTCGGGCTAGGAGATGCAT 60.179 55.000 0.00 0.00 35.70 3.96
326 327 0.825425 CTCTCGGGCTAGGAGATGCA 60.825 60.000 0.00 0.00 39.64 3.96
327 328 0.538516 TCTCTCGGGCTAGGAGATGC 60.539 60.000 0.00 0.00 39.64 3.91
328 329 2.214376 ATCTCTCGGGCTAGGAGATG 57.786 55.000 12.86 5.48 42.83 2.90
329 330 2.109128 TCAATCTCTCGGGCTAGGAGAT 59.891 50.000 9.52 9.52 45.28 2.75
330 331 1.495148 TCAATCTCTCGGGCTAGGAGA 59.505 52.381 0.00 0.00 39.87 3.71
331 332 1.988293 TCAATCTCTCGGGCTAGGAG 58.012 55.000 0.00 0.00 0.00 3.69
332 333 2.454336 TTCAATCTCTCGGGCTAGGA 57.546 50.000 0.00 0.00 0.00 2.94
333 334 3.543680 TTTTCAATCTCTCGGGCTAGG 57.456 47.619 0.00 0.00 0.00 3.02
381 387 3.456277 GGAGGGTGTTCATCATAAGAGGT 59.544 47.826 0.00 0.00 0.00 3.85
388 394 0.257039 GCCAGGAGGGTGTTCATCAT 59.743 55.000 0.00 0.00 39.65 2.45
389 395 0.842030 AGCCAGGAGGGTGTTCATCA 60.842 55.000 0.00 0.00 45.81 3.07
390 396 1.994463 AGCCAGGAGGGTGTTCATC 59.006 57.895 0.00 0.00 45.81 2.92
493 499 2.023113 AGAAGAGAGGCAGGAGGAGAAT 60.023 50.000 0.00 0.00 0.00 2.40
494 500 1.360852 AGAAGAGAGGCAGGAGGAGAA 59.639 52.381 0.00 0.00 0.00 2.87
495 501 1.006813 AGAAGAGAGGCAGGAGGAGA 58.993 55.000 0.00 0.00 0.00 3.71
496 502 1.756538 GAAGAAGAGAGGCAGGAGGAG 59.243 57.143 0.00 0.00 0.00 3.69
561 567 1.051812 AGCTATGGGATGAAGACGGG 58.948 55.000 0.00 0.00 0.00 5.28
639 645 2.434185 CGAAGCCTGCCAACGCTA 60.434 61.111 0.00 0.00 34.11 4.26
640 646 4.314440 TCGAAGCCTGCCAACGCT 62.314 61.111 0.00 0.00 36.74 5.07
641 647 3.793144 CTCGAAGCCTGCCAACGC 61.793 66.667 0.00 0.00 0.00 4.84
642 648 3.793144 GCTCGAAGCCTGCCAACG 61.793 66.667 0.00 0.00 34.48 4.10
651 657 2.202756 CTGGTACGGGCTCGAAGC 60.203 66.667 15.95 1.07 41.46 3.86
714 720 0.537653 GCGGAAGGCTCTTCTTACCT 59.462 55.000 12.71 0.00 39.11 3.08
768 785 1.006281 AGAATCCCCAGCTGCATTTGA 59.994 47.619 8.66 0.00 0.00 2.69
769 786 1.136305 CAGAATCCCCAGCTGCATTTG 59.864 52.381 8.66 0.00 0.00 2.32
770 787 1.481871 CAGAATCCCCAGCTGCATTT 58.518 50.000 8.66 0.00 0.00 2.32
771 788 3.202548 CAGAATCCCCAGCTGCATT 57.797 52.632 8.66 5.83 0.00 3.56
775 792 1.407979 GAAATGCAGAATCCCCAGCTG 59.592 52.381 6.78 6.78 0.00 4.24
776 793 1.687368 GGAAATGCAGAATCCCCAGCT 60.687 52.381 0.00 0.00 0.00 4.24
787 804 3.748048 TGAGAAACGAGAAGGAAATGCAG 59.252 43.478 0.00 0.00 0.00 4.41
823 848 3.610242 CAGGATTACGAGAAGCGCATATC 59.390 47.826 11.47 2.91 46.04 1.63
824 849 3.579709 CAGGATTACGAGAAGCGCATAT 58.420 45.455 11.47 0.00 46.04 1.78
849 874 3.679389 AGCTTGGATAATTATGGCCTCG 58.321 45.455 3.32 0.00 0.00 4.63
853 878 6.150140 CCTGTTCTAGCTTGGATAATTATGGC 59.850 42.308 1.78 2.47 0.00 4.40
865 890 0.895530 TCGACCCCTGTTCTAGCTTG 59.104 55.000 0.00 0.00 0.00 4.01
891 917 0.397941 TCAAGGTGGGCAGAACAGAG 59.602 55.000 0.00 0.00 0.00 3.35
917 943 2.325583 AAGTCAGCGTGGTTCTGAAA 57.674 45.000 0.00 0.00 41.66 2.69
918 944 2.101750 TGTAAGTCAGCGTGGTTCTGAA 59.898 45.455 0.00 0.00 41.66 3.02
919 945 1.684450 TGTAAGTCAGCGTGGTTCTGA 59.316 47.619 0.00 0.00 38.16 3.27
920 946 2.148916 TGTAAGTCAGCGTGGTTCTG 57.851 50.000 0.00 0.00 0.00 3.02
921 947 2.612972 CCATGTAAGTCAGCGTGGTTCT 60.613 50.000 0.00 0.00 37.09 3.01
923 949 1.808411 CCATGTAAGTCAGCGTGGTT 58.192 50.000 0.00 0.00 37.09 3.67
924 950 0.685097 ACCATGTAAGTCAGCGTGGT 59.315 50.000 2.90 2.90 46.68 4.16
926 952 1.359848 GGACCATGTAAGTCAGCGTG 58.640 55.000 3.47 0.00 35.89 5.34
927 953 0.108804 CGGACCATGTAAGTCAGCGT 60.109 55.000 3.47 0.00 35.89 5.07
928 954 1.421410 GCGGACCATGTAAGTCAGCG 61.421 60.000 9.20 3.48 43.62 5.18
929 955 2.384203 GCGGACCATGTAAGTCAGC 58.616 57.895 9.20 9.20 45.61 4.26
930 956 2.159043 AGATGCGGACCATGTAAGTCAG 60.159 50.000 3.47 0.75 35.89 3.51
931 957 1.831106 AGATGCGGACCATGTAAGTCA 59.169 47.619 3.47 0.00 35.89 3.41
932 958 2.604046 AGATGCGGACCATGTAAGTC 57.396 50.000 0.00 0.00 33.29 3.01
933 959 4.100963 TGAATAGATGCGGACCATGTAAGT 59.899 41.667 0.00 0.00 33.89 2.24
935 961 4.503123 CCTGAATAGATGCGGACCATGTAA 60.503 45.833 0.00 0.00 33.89 2.41
936 962 3.006859 CCTGAATAGATGCGGACCATGTA 59.993 47.826 0.00 0.00 34.58 2.29
937 963 2.224378 CCTGAATAGATGCGGACCATGT 60.224 50.000 0.00 0.00 33.29 3.21
942 968 0.946221 CGCCCTGAATAGATGCGGAC 60.946 60.000 0.00 0.00 39.62 4.79
952 978 2.565841 GATAAGCAGAACGCCCTGAAT 58.434 47.619 8.61 0.00 44.04 2.57
1036 1062 5.411361 GCAAGTTCATTATTGGGGGAAAAAC 59.589 40.000 0.00 0.00 0.00 2.43
1043 1069 3.364549 TCCTGCAAGTTCATTATTGGGG 58.635 45.455 0.00 0.00 0.00 4.96
1071 1101 4.701651 TGGAATGAGTGAATGAACATGGAC 59.298 41.667 0.00 0.00 0.00 4.02
1084 1117 5.010922 TGGAAATGGAACTTTGGAATGAGTG 59.989 40.000 0.00 0.00 0.00 3.51
1094 1127 5.047092 GGATCATGTGTGGAAATGGAACTTT 60.047 40.000 0.00 0.00 0.00 2.66
1132 1168 2.892425 GCGCTCCTCCGTGAATGG 60.892 66.667 0.00 0.00 0.00 3.16
1155 1191 1.673665 CTCTGCACAGGGAACAGGC 60.674 63.158 0.00 0.00 32.19 4.85
1249 1286 9.490083 AGTAAGTCCTTATGTTTAGTACCATCT 57.510 33.333 0.00 0.00 0.00 2.90
1261 1298 8.258708 GTGGAATTCAGTAGTAAGTCCTTATGT 58.741 37.037 7.93 0.00 40.79 2.29
1262 1299 7.435488 CGTGGAATTCAGTAGTAAGTCCTTATG 59.565 40.741 7.93 0.00 40.79 1.90
1268 5239 3.864003 GGCGTGGAATTCAGTAGTAAGTC 59.136 47.826 7.93 0.00 0.00 3.01
1272 5243 2.829720 ACAGGCGTGGAATTCAGTAGTA 59.170 45.455 11.67 0.00 0.00 1.82
1274 5245 2.386661 ACAGGCGTGGAATTCAGTAG 57.613 50.000 11.67 0.00 0.00 2.57
1276 5247 1.202758 TGAACAGGCGTGGAATTCAGT 60.203 47.619 11.67 0.00 0.00 3.41
1300 5271 0.692476 TCAGGTGTTCACTCCCCATG 59.308 55.000 2.98 0.00 0.00 3.66
1310 5282 2.672961 TGGACGATCATCAGGTGTTC 57.327 50.000 0.00 0.00 0.00 3.18
1314 5286 1.500474 ACCATGGACGATCATCAGGT 58.500 50.000 21.47 0.00 0.00 4.00
1315 5287 2.216046 CAACCATGGACGATCATCAGG 58.784 52.381 21.47 0.00 0.00 3.86
1358 5330 1.270147 ACCTTGTTCTCGTCCCTTTCG 60.270 52.381 0.00 0.00 0.00 3.46
1361 5333 1.070289 GTCACCTTGTTCTCGTCCCTT 59.930 52.381 0.00 0.00 0.00 3.95
1367 5339 0.031585 TCACCGTCACCTTGTTCTCG 59.968 55.000 0.00 0.00 0.00 4.04
1469 5441 1.985895 TCCTCCTGGTTTTCTTCCTCC 59.014 52.381 0.00 0.00 34.23 4.30
1502 5474 2.762459 TAAGCATCCTCGCCGGGT 60.762 61.111 2.18 0.00 0.00 5.28
1565 5537 5.422331 CCTCTGGAACTCATTACCTAGAACA 59.578 44.000 0.00 0.00 0.00 3.18
1574 5546 0.178068 GCGGCCTCTGGAACTCATTA 59.822 55.000 0.00 0.00 0.00 1.90
1577 5549 3.706373 GGCGGCCTCTGGAACTCA 61.706 66.667 12.87 0.00 0.00 3.41
1610 5582 2.521146 CGTGTTCTCGTCGTCGAAATAG 59.479 50.000 6.19 0.00 45.61 1.73
1691 5663 8.934023 TTAAGAGAACCAAGGAAAACACATAT 57.066 30.769 0.00 0.00 0.00 1.78
1748 5720 7.460910 TGAGCTAATAGGCCAATTTGATATGA 58.539 34.615 5.01 0.00 0.00 2.15
1749 5721 7.627939 GCTGAGCTAATAGGCCAATTTGATATG 60.628 40.741 5.01 0.00 0.00 1.78
1801 5773 1.340248 GTCTCGAACCTGTGACCTTCA 59.660 52.381 0.00 0.00 0.00 3.02
1911 5927 5.594317 GGTTCATGGAAATAATACTGCACCT 59.406 40.000 0.00 0.00 0.00 4.00
1912 5928 5.594317 AGGTTCATGGAAATAATACTGCACC 59.406 40.000 0.00 0.00 0.00 5.01
1913 5929 6.498304 CAGGTTCATGGAAATAATACTGCAC 58.502 40.000 0.00 0.00 0.00 4.57
1914 5930 5.067674 GCAGGTTCATGGAAATAATACTGCA 59.932 40.000 0.00 0.00 44.90 4.41
1916 5932 6.238842 CCAGCAGGTTCATGGAAATAATACTG 60.239 42.308 0.00 0.00 36.09 2.74
2078 6206 3.820467 TCAGTGCTTGTAGTTGGGAAATG 59.180 43.478 0.00 0.00 0.00 2.32
2114 6265 1.827399 TTGAAGGGCGGAGACACCTC 61.827 60.000 0.00 0.00 37.00 3.85
2170 6324 3.637432 GTCAAATGTTCGGAATGTGCAA 58.363 40.909 0.00 0.00 0.00 4.08
2187 6341 1.337447 GCTAGTGCTTGGTACCGTCAA 60.337 52.381 7.57 0.00 36.03 3.18
2300 6485 5.868043 TCTGCAGTTTGATTCACAGTATG 57.132 39.130 14.67 0.00 46.00 2.39
2341 6526 2.380410 CGGTTTCTGCCTTCGACGG 61.380 63.158 3.00 3.00 0.00 4.79
2364 6549 3.325293 AGTGTTGTGGCTGTAGATCAG 57.675 47.619 0.00 0.00 46.12 2.90
2405 6590 6.956299 ATGAAGCTTTATTGTAACGTACGT 57.044 33.333 16.72 16.72 0.00 3.57
2406 6591 9.910511 AAATATGAAGCTTTATTGTAACGTACG 57.089 29.630 15.01 15.01 0.00 3.67
2538 6728 2.348666 CACCGAGCAATGTTAGCTGTAC 59.651 50.000 0.00 0.00 43.58 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.