Multiple sequence alignment - TraesCS2B01G375700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G375700 chr2B 100.000 7552 0 0 1 7552 538944574 538952125 0.000000e+00 13947.0
1 TraesCS2B01G375700 chr2B 89.116 147 15 1 666 811 40860459 40860605 1.670000e-41 182.0
2 TraesCS2B01G375700 chr2D 95.655 4373 123 22 1453 5795 457644954 457649289 0.000000e+00 6961.0
3 TraesCS2B01G375700 chr2D 92.907 1847 77 23 5726 7552 457649288 457651100 0.000000e+00 2636.0
4 TraesCS2B01G375700 chr2D 93.544 666 35 7 844 1504 457644255 457644917 0.000000e+00 985.0
5 TraesCS2B01G375700 chr2D 92.138 407 17 10 229 629 457643610 457644007 1.840000e-155 560.0
6 TraesCS2B01G375700 chr2D 90.254 236 22 1 1 235 457642997 457643232 2.650000e-79 307.0
7 TraesCS2B01G375700 chr2A 95.071 2942 111 15 3024 5961 601329404 601332315 0.000000e+00 4599.0
8 TraesCS2B01G375700 chr2A 93.836 1606 68 9 1453 3032 601326481 601328081 0.000000e+00 2388.0
9 TraesCS2B01G375700 chr2A 92.074 921 42 13 6040 6946 601333349 601334252 0.000000e+00 1267.0
10 TraesCS2B01G375700 chr2A 94.012 668 32 8 844 1506 601325826 601326490 0.000000e+00 1005.0
11 TraesCS2B01G375700 chr2A 90.204 490 34 10 184 666 601325296 601325778 1.790000e-175 627.0
12 TraesCS2B01G375700 chr2A 88.591 298 25 8 6929 7219 601334268 601334563 3.350000e-93 353.0
13 TraesCS2B01G375700 chr2A 81.250 160 21 7 352 505 751010255 751010411 3.700000e-23 121.0
14 TraesCS2B01G375700 chr2A 77.720 193 30 11 345 530 83642987 83642801 1.040000e-18 106.0
15 TraesCS2B01G375700 chr3B 91.391 151 12 1 663 812 104967106 104967256 9.930000e-49 206.0
16 TraesCS2B01G375700 chr3B 87.662 154 17 1 657 810 741414992 741415143 2.170000e-40 178.0
17 TraesCS2B01G375700 chr3B 80.851 188 25 9 349 529 88489627 88489444 3.680000e-28 137.0
18 TraesCS2B01G375700 chr3B 80.435 184 26 8 352 529 600469452 600469273 1.710000e-26 132.0
19 TraesCS2B01G375700 chr4D 88.489 139 16 0 670 808 324466807 324466945 1.300000e-37 169.0
20 TraesCS2B01G375700 chr4D 89.535 86 6 1 707 792 396420606 396420688 1.040000e-18 106.0
21 TraesCS2B01G375700 chr5A 86.301 146 20 0 666 811 608442100 608441955 7.840000e-35 159.0
22 TraesCS2B01G375700 chr4A 92.632 95 6 1 717 810 665176530 665176436 1.320000e-27 135.0
23 TraesCS2B01G375700 chr6D 79.121 182 27 9 354 528 262035202 262035379 1.720000e-21 115.0
24 TraesCS2B01G375700 chr6A 78.125 192 29 11 346 530 107862755 107862940 8.010000e-20 110.0
25 TraesCS2B01G375700 chr7A 84.932 73 11 0 381 453 273648939 273649011 2.920000e-09 75.0
26 TraesCS2B01G375700 chr7D 89.130 46 3 2 7206 7250 554577928 554577884 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G375700 chr2B 538944574 538952125 7551 False 13947.0 13947 100.0000 1 7552 1 chr2B.!!$F2 7551
1 TraesCS2B01G375700 chr2D 457642997 457651100 8103 False 2289.8 6961 92.8996 1 7552 5 chr2D.!!$F1 7551
2 TraesCS2B01G375700 chr2A 601325296 601334563 9267 False 1706.5 4599 92.2980 184 7219 6 chr2A.!!$F2 7035

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
783 1339 0.248289 ATCGTAAGTGTTGGACGGGG 59.752 55.000 0.00 0.00 37.20 5.73 F
785 1341 0.248289 CGTAAGTGTTGGACGGGGAT 59.752 55.000 0.00 0.00 33.01 3.85 F
1391 1973 0.326595 TGCAGGTAAGCGGGATTTGA 59.673 50.000 0.00 0.00 37.31 2.69 F
1999 2697 0.960364 TGGAGCTTCCGCAATCAACC 60.960 55.000 0.00 0.00 40.17 3.77 F
2007 2705 2.255252 GCAATCAACCGCGTTGCT 59.745 55.556 20.21 7.77 43.56 3.91 F
3767 5801 1.896220 TGAGAGAATGTGGGCACAAC 58.104 50.000 0.00 0.00 45.41 3.32 F
3970 6004 3.088532 AGTGGTGAGCTCTTGACTCTAG 58.911 50.000 16.19 0.00 35.12 2.43 F
4817 6851 1.528586 CTGAAAGACTTGGACTGTGCG 59.471 52.381 0.00 0.00 34.07 5.34 F
5966 8072 0.804989 CGGATGGGACTGAGTTTTGC 59.195 55.000 0.00 0.00 0.00 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1649 2323 1.067354 GCAAAAGGAGGGCATGTCAAG 60.067 52.381 0.00 0.0 0.00 3.02 R
1823 2521 1.243902 CGCCACAAACATACCAACCT 58.756 50.000 0.00 0.0 0.00 3.50 R
3052 5085 2.040278 ACAAGCTATGAAGAACTGGGCA 59.960 45.455 0.00 0.0 0.00 5.36 R
3647 5681 4.262617 TGTACCGTTGCTGCCAATATTTA 58.737 39.130 0.00 0.0 32.75 1.40 R
4003 6037 3.753272 AGCGAGTGAAATGCAACAGTATT 59.247 39.130 0.00 0.0 0.00 1.89 R
4631 6665 0.441533 CAGCTGCTGTACTTCGCAAG 59.558 55.000 21.21 0.0 35.46 4.01 R
5747 7785 0.657312 CAACAAGCAGTCAAGCGTGA 59.343 50.000 8.73 0.0 45.03 4.35 R
6242 9310 0.174389 GGCTCTTGCTCTCGATGACA 59.826 55.000 0.00 0.0 39.59 3.58 R
6803 9884 0.179140 GCACACAAACACACCACCAG 60.179 55.000 0.00 0.0 0.00 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 1.605451 ATGGTCGACTCCGTGGACA 60.605 57.895 16.46 2.22 41.79 4.02
98 99 0.952280 CCTAGCTCATGCATTGCCTG 59.048 55.000 15.41 6.89 42.74 4.85
104 105 2.288030 GCTCATGCATTGCCTGATTACC 60.288 50.000 15.59 3.60 39.41 2.85
111 112 3.382546 GCATTGCCTGATTACCTTCATGT 59.617 43.478 0.00 0.00 0.00 3.21
171 173 7.917730 AAATTGTATGAATGATGATTCCCCA 57.082 32.000 2.25 0.00 37.74 4.96
172 174 7.917730 AATTGTATGAATGATGATTCCCCAA 57.082 32.000 2.25 3.54 37.74 4.12
177 179 4.869451 TGAATGATGATTCCCCAACATGA 58.131 39.130 0.00 0.00 37.74 3.07
194 196 1.568504 TGACTGGGTAGATCGCCTTT 58.431 50.000 8.83 0.00 0.00 3.11
199 201 1.760613 TGGGTAGATCGCCTTTACCAG 59.239 52.381 9.58 0.00 38.85 4.00
200 202 1.540580 GGGTAGATCGCCTTTACCAGC 60.541 57.143 9.58 0.00 38.85 4.85
253 639 4.861196 TGCACCCTGGTATATTTGCTAAA 58.139 39.130 0.00 0.00 0.00 1.85
282 668 9.423061 ACCATTGCACAAATAAAAATAGTTCTC 57.577 29.630 0.00 0.00 0.00 2.87
453 841 4.894784 TGAGGTGTTTGGCTCTAGTTAAG 58.105 43.478 0.00 0.00 0.00 1.85
465 853 9.509956 TTGGCTCTAGTTAAGCTTGTATTTTTA 57.490 29.630 9.86 0.00 39.75 1.52
565 958 2.319472 GAGAAATGCAACAAACGCTCC 58.681 47.619 0.00 0.00 0.00 4.70
566 959 1.956477 AGAAATGCAACAAACGCTCCT 59.044 42.857 0.00 0.00 0.00 3.69
567 960 2.030805 AGAAATGCAACAAACGCTCCTC 60.031 45.455 0.00 0.00 0.00 3.71
569 962 0.537143 ATGCAACAAACGCTCCTCCA 60.537 50.000 0.00 0.00 0.00 3.86
571 964 0.598065 GCAACAAACGCTCCTCCAAT 59.402 50.000 0.00 0.00 0.00 3.16
572 965 1.401539 GCAACAAACGCTCCTCCAATC 60.402 52.381 0.00 0.00 0.00 2.67
619 1013 6.297185 ATTTTTGTAAATAGTACCCCCTCGGT 60.297 38.462 0.00 0.00 39.21 4.69
666 1222 8.932791 AGGTTACTAACTGATGTTTCATAAACG 58.067 33.333 0.00 0.00 44.28 3.60
667 1223 8.928733 GGTTACTAACTGATGTTTCATAAACGA 58.071 33.333 0.00 0.00 44.28 3.85
679 1235 6.804534 TTTCATAAACGAAACTGCTTTGTG 57.195 33.333 0.00 0.00 31.50 3.33
680 1236 5.493133 TCATAAACGAAACTGCTTTGTGT 57.507 34.783 0.00 0.00 31.50 3.72
681 1237 6.606234 TCATAAACGAAACTGCTTTGTGTA 57.394 33.333 0.00 0.00 31.50 2.90
682 1238 6.423862 TCATAAACGAAACTGCTTTGTGTAC 58.576 36.000 0.00 0.00 31.50 2.90
683 1239 3.313274 AACGAAACTGCTTTGTGTACG 57.687 42.857 0.00 0.00 31.50 3.67
684 1240 2.542597 ACGAAACTGCTTTGTGTACGA 58.457 42.857 0.00 0.00 29.77 3.43
685 1241 3.128349 ACGAAACTGCTTTGTGTACGAT 58.872 40.909 0.00 0.00 29.77 3.73
686 1242 3.558418 ACGAAACTGCTTTGTGTACGATT 59.442 39.130 0.00 0.00 29.77 3.34
687 1243 4.141680 CGAAACTGCTTTGTGTACGATTC 58.858 43.478 0.00 0.00 0.00 2.52
688 1244 4.318475 CGAAACTGCTTTGTGTACGATTCA 60.318 41.667 0.00 0.00 0.00 2.57
689 1245 5.614668 CGAAACTGCTTTGTGTACGATTCAT 60.615 40.000 0.00 0.00 0.00 2.57
690 1246 6.400621 CGAAACTGCTTTGTGTACGATTCATA 60.401 38.462 0.00 0.00 0.00 2.15
691 1247 6.985188 AACTGCTTTGTGTACGATTCATAT 57.015 33.333 0.00 0.00 0.00 1.78
692 1248 6.985188 ACTGCTTTGTGTACGATTCATATT 57.015 33.333 0.00 0.00 0.00 1.28
693 1249 7.005062 ACTGCTTTGTGTACGATTCATATTC 57.995 36.000 0.00 0.00 0.00 1.75
694 1250 6.593770 ACTGCTTTGTGTACGATTCATATTCA 59.406 34.615 0.00 0.00 0.00 2.57
695 1251 7.280876 ACTGCTTTGTGTACGATTCATATTCAT 59.719 33.333 0.00 0.00 0.00 2.57
696 1252 7.630026 TGCTTTGTGTACGATTCATATTCATC 58.370 34.615 0.00 0.00 0.00 2.92
697 1253 6.787515 GCTTTGTGTACGATTCATATTCATCG 59.212 38.462 10.48 10.48 46.33 3.84
705 1261 6.381465 CGATTCATATTCATCGTACACTGG 57.619 41.667 5.46 0.00 37.98 4.00
706 1262 5.920840 CGATTCATATTCATCGTACACTGGT 59.079 40.000 5.46 0.00 37.98 4.00
707 1263 7.081976 CGATTCATATTCATCGTACACTGGTA 58.918 38.462 5.46 0.00 37.98 3.25
708 1264 7.060748 CGATTCATATTCATCGTACACTGGTAC 59.939 40.741 5.46 0.00 45.18 3.34
719 1275 3.662247 ACACTGGTACAACTAGACTGC 57.338 47.619 0.00 0.00 38.70 4.40
720 1276 3.231818 ACACTGGTACAACTAGACTGCT 58.768 45.455 0.00 0.00 38.70 4.24
721 1277 4.404640 ACACTGGTACAACTAGACTGCTA 58.595 43.478 0.00 0.00 38.70 3.49
722 1278 4.831155 ACACTGGTACAACTAGACTGCTAA 59.169 41.667 0.00 0.00 38.70 3.09
723 1279 5.480772 ACACTGGTACAACTAGACTGCTAAT 59.519 40.000 0.00 0.00 38.70 1.73
724 1280 5.807520 CACTGGTACAACTAGACTGCTAATG 59.192 44.000 0.00 0.00 38.70 1.90
725 1281 4.755411 TGGTACAACTAGACTGCTAATGC 58.245 43.478 0.00 0.00 35.53 3.56
726 1282 4.466370 TGGTACAACTAGACTGCTAATGCT 59.534 41.667 0.00 0.00 35.91 3.79
727 1283 5.655090 TGGTACAACTAGACTGCTAATGCTA 59.345 40.000 0.00 0.00 35.91 3.49
728 1284 6.323996 TGGTACAACTAGACTGCTAATGCTAT 59.676 38.462 0.00 0.00 35.91 2.97
729 1285 6.642950 GGTACAACTAGACTGCTAATGCTATG 59.357 42.308 0.00 0.00 40.48 2.23
730 1286 6.471233 ACAACTAGACTGCTAATGCTATGA 57.529 37.500 0.00 0.00 40.48 2.15
731 1287 6.276847 ACAACTAGACTGCTAATGCTATGAC 58.723 40.000 0.00 0.00 40.48 3.06
732 1288 5.461032 ACTAGACTGCTAATGCTATGACC 57.539 43.478 0.00 0.00 40.48 4.02
733 1289 3.760580 AGACTGCTAATGCTATGACCC 57.239 47.619 0.00 0.00 40.48 4.46
734 1290 3.041211 AGACTGCTAATGCTATGACCCA 58.959 45.455 0.00 0.00 40.48 4.51
735 1291 3.134458 GACTGCTAATGCTATGACCCAC 58.866 50.000 0.00 0.00 40.48 4.61
736 1292 2.505407 ACTGCTAATGCTATGACCCACA 59.495 45.455 0.00 0.00 40.48 4.17
737 1293 3.054434 ACTGCTAATGCTATGACCCACAA 60.054 43.478 0.00 0.00 40.48 3.33
738 1294 3.947196 CTGCTAATGCTATGACCCACAAA 59.053 43.478 0.00 0.00 40.48 2.83
739 1295 3.694072 TGCTAATGCTATGACCCACAAAC 59.306 43.478 0.00 0.00 40.48 2.93
740 1296 3.947834 GCTAATGCTATGACCCACAAACT 59.052 43.478 0.00 0.00 36.03 2.66
741 1297 4.201950 GCTAATGCTATGACCCACAAACTG 60.202 45.833 0.00 0.00 36.03 3.16
742 1298 3.719268 ATGCTATGACCCACAAACTGA 57.281 42.857 0.00 0.00 0.00 3.41
743 1299 3.500448 TGCTATGACCCACAAACTGAA 57.500 42.857 0.00 0.00 0.00 3.02
744 1300 4.032960 TGCTATGACCCACAAACTGAAT 57.967 40.909 0.00 0.00 0.00 2.57
745 1301 4.009675 TGCTATGACCCACAAACTGAATC 58.990 43.478 0.00 0.00 0.00 2.52
746 1302 4.009675 GCTATGACCCACAAACTGAATCA 58.990 43.478 0.00 0.00 0.00 2.57
747 1303 4.641989 GCTATGACCCACAAACTGAATCAT 59.358 41.667 0.00 0.00 32.19 2.45
748 1304 5.220931 GCTATGACCCACAAACTGAATCATC 60.221 44.000 0.00 0.00 30.78 2.92
749 1305 4.097551 TGACCCACAAACTGAATCATCA 57.902 40.909 0.00 0.00 0.00 3.07
750 1306 4.468713 TGACCCACAAACTGAATCATCAA 58.531 39.130 0.00 0.00 34.49 2.57
751 1307 5.078949 TGACCCACAAACTGAATCATCAAT 58.921 37.500 0.00 0.00 34.49 2.57
752 1308 5.047872 TGACCCACAAACTGAATCATCAATG 60.048 40.000 0.00 0.00 34.49 2.82
753 1309 4.834496 ACCCACAAACTGAATCATCAATGT 59.166 37.500 0.00 0.00 34.49 2.71
754 1310 5.305128 ACCCACAAACTGAATCATCAATGTT 59.695 36.000 0.00 0.00 34.49 2.71
755 1311 6.183360 ACCCACAAACTGAATCATCAATGTTT 60.183 34.615 0.00 0.00 35.50 2.83
756 1312 6.707161 CCCACAAACTGAATCATCAATGTTTT 59.293 34.615 0.00 0.00 33.88 2.43
757 1313 7.307514 CCCACAAACTGAATCATCAATGTTTTG 60.308 37.037 0.00 0.00 33.88 2.44
758 1314 7.225145 CCACAAACTGAATCATCAATGTTTTGT 59.775 33.333 0.00 0.00 33.88 2.83
759 1315 8.270799 CACAAACTGAATCATCAATGTTTTGTC 58.729 33.333 0.00 0.00 33.88 3.18
760 1316 8.199449 ACAAACTGAATCATCAATGTTTTGTCT 58.801 29.630 0.00 0.00 33.88 3.41
761 1317 8.697067 CAAACTGAATCATCAATGTTTTGTCTC 58.303 33.333 0.00 0.00 33.88 3.36
762 1318 7.756395 ACTGAATCATCAATGTTTTGTCTCT 57.244 32.000 0.00 0.00 34.49 3.10
763 1319 8.853077 ACTGAATCATCAATGTTTTGTCTCTA 57.147 30.769 0.00 0.00 34.49 2.43
764 1320 9.288576 ACTGAATCATCAATGTTTTGTCTCTAA 57.711 29.630 0.00 0.00 34.49 2.10
767 1323 9.430838 GAATCATCAATGTTTTGTCTCTAATCG 57.569 33.333 0.00 0.00 34.32 3.34
768 1324 7.905604 TCATCAATGTTTTGTCTCTAATCGT 57.094 32.000 0.00 0.00 34.32 3.73
769 1325 8.996024 TCATCAATGTTTTGTCTCTAATCGTA 57.004 30.769 0.00 0.00 34.32 3.43
770 1326 9.430623 TCATCAATGTTTTGTCTCTAATCGTAA 57.569 29.630 0.00 0.00 34.32 3.18
771 1327 9.694520 CATCAATGTTTTGTCTCTAATCGTAAG 57.305 33.333 0.00 0.00 34.32 2.34
772 1328 8.827177 TCAATGTTTTGTCTCTAATCGTAAGT 57.173 30.769 0.00 0.00 34.64 2.24
773 1329 8.708742 TCAATGTTTTGTCTCTAATCGTAAGTG 58.291 33.333 0.00 0.00 34.64 3.16
774 1330 8.495949 CAATGTTTTGTCTCTAATCGTAAGTGT 58.504 33.333 0.00 0.00 39.48 3.55
775 1331 8.603242 ATGTTTTGTCTCTAATCGTAAGTGTT 57.397 30.769 0.00 0.00 39.48 3.32
776 1332 7.847487 TGTTTTGTCTCTAATCGTAAGTGTTG 58.153 34.615 0.00 0.00 39.48 3.33
777 1333 7.042321 TGTTTTGTCTCTAATCGTAAGTGTTGG 60.042 37.037 0.00 0.00 39.48 3.77
778 1334 5.970317 TGTCTCTAATCGTAAGTGTTGGA 57.030 39.130 0.00 0.00 39.48 3.53
779 1335 5.706916 TGTCTCTAATCGTAAGTGTTGGAC 58.293 41.667 0.00 0.00 39.48 4.02
780 1336 4.792189 GTCTCTAATCGTAAGTGTTGGACG 59.208 45.833 0.00 0.00 37.93 4.79
781 1337 4.100707 TCTAATCGTAAGTGTTGGACGG 57.899 45.455 0.00 0.00 37.20 4.79
782 1338 2.088950 AATCGTAAGTGTTGGACGGG 57.911 50.000 0.00 0.00 37.20 5.28
783 1339 0.248289 ATCGTAAGTGTTGGACGGGG 59.752 55.000 0.00 0.00 37.20 5.73
784 1340 0.827089 TCGTAAGTGTTGGACGGGGA 60.827 55.000 0.00 0.00 37.20 4.81
785 1341 0.248289 CGTAAGTGTTGGACGGGGAT 59.752 55.000 0.00 0.00 33.01 3.85
786 1342 1.338389 CGTAAGTGTTGGACGGGGATT 60.338 52.381 0.00 0.00 33.01 3.01
787 1343 2.786777 GTAAGTGTTGGACGGGGATTT 58.213 47.619 0.00 0.00 0.00 2.17
788 1344 1.905637 AAGTGTTGGACGGGGATTTC 58.094 50.000 0.00 0.00 0.00 2.17
789 1345 0.768622 AGTGTTGGACGGGGATTTCA 59.231 50.000 0.00 0.00 0.00 2.69
790 1346 1.354368 AGTGTTGGACGGGGATTTCAT 59.646 47.619 0.00 0.00 0.00 2.57
791 1347 1.743394 GTGTTGGACGGGGATTTCATC 59.257 52.381 0.00 0.00 0.00 2.92
792 1348 1.014352 GTTGGACGGGGATTTCATCG 58.986 55.000 0.00 0.00 0.00 3.84
793 1349 0.616371 TTGGACGGGGATTTCATCGT 59.384 50.000 0.00 0.00 38.62 3.73
794 1350 1.487300 TGGACGGGGATTTCATCGTA 58.513 50.000 0.00 0.00 35.91 3.43
795 1351 1.137479 TGGACGGGGATTTCATCGTAC 59.863 52.381 0.00 0.00 37.02 3.67
796 1352 1.484356 GACGGGGATTTCATCGTACG 58.516 55.000 9.53 9.53 35.91 3.67
797 1353 0.819582 ACGGGGATTTCATCGTACGT 59.180 50.000 16.05 0.00 33.89 3.57
798 1354 2.023673 ACGGGGATTTCATCGTACGTA 58.976 47.619 16.05 2.34 33.85 3.57
799 1355 2.624838 ACGGGGATTTCATCGTACGTAT 59.375 45.455 16.05 4.80 33.85 3.06
800 1356 3.820467 ACGGGGATTTCATCGTACGTATA 59.180 43.478 16.05 0.00 33.85 1.47
801 1357 4.083110 ACGGGGATTTCATCGTACGTATAG 60.083 45.833 16.05 4.06 33.85 1.31
802 1358 4.171754 GGGGATTTCATCGTACGTATAGC 58.828 47.826 16.05 0.66 0.00 2.97
803 1359 4.321452 GGGGATTTCATCGTACGTATAGCA 60.321 45.833 16.05 0.00 0.00 3.49
804 1360 5.224888 GGGATTTCATCGTACGTATAGCAA 58.775 41.667 16.05 2.78 0.00 3.91
805 1361 5.345202 GGGATTTCATCGTACGTATAGCAAG 59.655 44.000 16.05 0.00 0.00 4.01
806 1362 5.345202 GGATTTCATCGTACGTATAGCAAGG 59.655 44.000 16.05 0.00 0.00 3.61
807 1363 4.906065 TTCATCGTACGTATAGCAAGGT 57.094 40.909 16.05 0.00 0.00 3.50
808 1364 4.478843 TCATCGTACGTATAGCAAGGTC 57.521 45.455 16.05 0.00 0.00 3.85
809 1365 3.059393 TCATCGTACGTATAGCAAGGTCG 60.059 47.826 16.05 0.00 0.00 4.79
810 1366 2.279741 TCGTACGTATAGCAAGGTCGT 58.720 47.619 16.05 0.00 38.30 4.34
811 1367 2.677836 TCGTACGTATAGCAAGGTCGTT 59.322 45.455 16.05 0.00 36.24 3.85
812 1368 3.126858 TCGTACGTATAGCAAGGTCGTTT 59.873 43.478 16.05 0.00 36.24 3.60
813 1369 3.479949 CGTACGTATAGCAAGGTCGTTTC 59.520 47.826 7.22 0.00 36.24 2.78
814 1370 3.581024 ACGTATAGCAAGGTCGTTTCA 57.419 42.857 0.00 0.00 0.00 2.69
815 1371 4.119442 ACGTATAGCAAGGTCGTTTCAT 57.881 40.909 0.00 0.00 0.00 2.57
816 1372 5.252969 ACGTATAGCAAGGTCGTTTCATA 57.747 39.130 0.00 0.00 0.00 2.15
817 1373 5.653507 ACGTATAGCAAGGTCGTTTCATAA 58.346 37.500 0.00 0.00 0.00 1.90
818 1374 6.101332 ACGTATAGCAAGGTCGTTTCATAAA 58.899 36.000 0.00 0.00 0.00 1.40
819 1375 6.035327 ACGTATAGCAAGGTCGTTTCATAAAC 59.965 38.462 0.00 0.00 38.02 2.01
877 1458 4.464597 ACTCCAGAGTCTCAACCTTATGTC 59.535 45.833 1.94 0.00 36.92 3.06
885 1467 4.081087 GTCTCAACCTTATGTCCCTGCTTA 60.081 45.833 0.00 0.00 0.00 3.09
929 1511 0.824182 TCAAACAAACGGCCGGGATT 60.824 50.000 31.76 18.41 0.00 3.01
967 1549 1.152290 TCCCACACTTGTCCCCGTA 60.152 57.895 0.00 0.00 0.00 4.02
1011 1593 1.338136 ACCTCGAAATGGATCCCGCT 61.338 55.000 9.90 0.00 0.00 5.52
1108 1690 2.615929 AATACCCAACCCGCCCCT 60.616 61.111 0.00 0.00 0.00 4.79
1120 1702 1.407656 CCGCCCCTCCAGTATTGCTA 61.408 60.000 0.00 0.00 0.00 3.49
1138 1720 4.473520 CGCCGGCCTCACATCCTT 62.474 66.667 23.46 0.00 0.00 3.36
1231 1813 3.285484 GACTCCTTCAGGTACGTATGGA 58.715 50.000 0.00 0.00 36.34 3.41
1245 1827 4.056050 ACGTATGGAGGATAAATTCGTGC 58.944 43.478 0.00 0.00 0.00 5.34
1247 1829 1.948104 TGGAGGATAAATTCGTGCCG 58.052 50.000 0.00 0.00 30.31 5.69
1248 1830 0.586802 GGAGGATAAATTCGTGCCGC 59.413 55.000 0.00 0.00 0.00 6.53
1249 1831 1.583054 GAGGATAAATTCGTGCCGCT 58.417 50.000 0.00 0.00 0.00 5.52
1251 1833 1.940613 AGGATAAATTCGTGCCGCTTC 59.059 47.619 0.00 0.00 0.00 3.86
1254 1836 1.647346 TAAATTCGTGCCGCTTCGAT 58.353 45.000 10.79 1.87 36.01 3.59
1259 1841 2.677003 CGTGCCGCTTCGATGGTTT 61.677 57.895 0.00 0.00 0.00 3.27
1265 1847 1.716172 GCTTCGATGGTTTCCTCGC 59.284 57.895 0.00 0.00 34.94 5.03
1278 1860 3.423154 CTCGCGGTTCTGTTGCCC 61.423 66.667 6.13 0.00 0.00 5.36
1297 1879 2.592308 GGGTGGTCTCTGATGCCC 59.408 66.667 0.00 0.00 0.00 5.36
1385 1967 0.605319 TTTCTGTGCAGGTAAGCGGG 60.605 55.000 0.00 0.00 37.31 6.13
1390 1972 0.451783 GTGCAGGTAAGCGGGATTTG 59.548 55.000 0.00 0.00 37.31 2.32
1391 1973 0.326595 TGCAGGTAAGCGGGATTTGA 59.673 50.000 0.00 0.00 37.31 2.69
1394 1976 2.427095 GCAGGTAAGCGGGATTTGAAAT 59.573 45.455 0.00 0.00 0.00 2.17
1396 1978 4.261197 GCAGGTAAGCGGGATTTGAAATAG 60.261 45.833 0.00 0.00 0.00 1.73
1422 2004 1.153765 GGCGAAATTGGAGCTTGGC 60.154 57.895 0.00 0.00 0.00 4.52
1448 2032 3.945285 ACTTGTACTGTTTGTGAACTGGG 59.055 43.478 0.00 0.00 38.57 4.45
1591 2265 1.374947 GTAGCCACTGTGCAGGGAA 59.625 57.895 2.55 0.00 32.29 3.97
1649 2323 4.207891 TCTACTTCCTGGATTTCAGCAC 57.792 45.455 0.00 0.00 42.05 4.40
1668 2343 2.029649 CACTTGACATGCCCTCCTTTTG 60.030 50.000 0.00 0.00 0.00 2.44
1695 2370 7.491372 CCAGTAATGCAACGATTCTTACTTAGA 59.509 37.037 4.31 0.00 31.94 2.10
1696 2371 8.869897 CAGTAATGCAACGATTCTTACTTAGAA 58.130 33.333 4.31 0.00 46.50 2.10
1757 2432 3.563808 TGTGGATCGAAAACAGTTTGAGG 59.436 43.478 0.00 0.00 0.00 3.86
1758 2433 3.813166 GTGGATCGAAAACAGTTTGAGGA 59.187 43.478 0.00 0.00 0.00 3.71
1802 2500 3.485463 TTCTGGTCGAATGTGGTTTCT 57.515 42.857 0.00 0.00 0.00 2.52
1823 2521 9.787532 GTTTCTGTTTTGCATTTAGAGCATATA 57.212 29.630 0.00 0.00 42.33 0.86
1841 2539 5.507315 GCATATAGGTTGGTATGTTTGTGGC 60.507 44.000 0.00 0.00 32.27 5.01
1902 2600 5.182001 GTGATAAGACCACAGAACATTGCTT 59.818 40.000 0.00 0.00 34.81 3.91
1909 2607 5.460646 ACCACAGAACATTGCTTAATTTCG 58.539 37.500 0.00 0.00 0.00 3.46
1979 2677 8.748380 ACTTTCAGTTAGAAATGCTAAATTGC 57.252 30.769 0.00 0.00 44.75 3.56
1999 2697 0.960364 TGGAGCTTCCGCAATCAACC 60.960 55.000 0.00 0.00 40.17 3.77
2007 2705 2.255252 GCAATCAACCGCGTTGCT 59.745 55.556 20.21 7.77 43.56 3.91
2402 3102 7.290658 TGGTATAGTCCCTATCATGAGAGAT 57.709 40.000 18.91 6.34 0.00 2.75
2473 3174 4.101741 GTGGGAGAAGGAATATAGTGCTGT 59.898 45.833 0.00 0.00 0.00 4.40
2562 3263 3.260740 CATTGTTCTCCACAGAGCTCTC 58.739 50.000 14.96 0.00 40.22 3.20
2778 3480 6.929606 ACTTATCAGTGTCTGGTTACTGTTTC 59.070 38.462 0.00 0.00 43.59 2.78
2875 3577 7.616313 AGAAGGCTATGTCCAATAATACTAGC 58.384 38.462 0.00 0.00 0.00 3.42
2881 3583 5.601583 TGTCCAATAATACTAGCGGTTCA 57.398 39.130 0.00 0.00 0.00 3.18
2965 3667 6.377146 TCCTTGATAAGCACATTTACCCTTTC 59.623 38.462 0.00 0.00 0.00 2.62
2967 3669 5.575157 TGATAAGCACATTTACCCTTTCCA 58.425 37.500 0.00 0.00 0.00 3.53
3191 5224 4.098654 CGGTCATTACTGGAGAAGATGACT 59.901 45.833 12.72 0.00 43.65 3.41
3251 5284 5.801380 AGGTTTGTGATGGTTCGTAACTAT 58.199 37.500 0.00 0.00 35.09 2.12
3299 5333 6.599244 TGAGGCACTTACTCAATCCATAAAAG 59.401 38.462 0.00 0.00 41.55 2.27
3408 5442 7.427606 CAGCGTCATTAATTTCACTTTCTGATC 59.572 37.037 0.00 0.00 0.00 2.92
3409 5443 6.409185 GCGTCATTAATTTCACTTTCTGATCG 59.591 38.462 0.00 0.00 0.00 3.69
3425 5459 6.724893 TCTGATCGTCATTTTAGATGGGTA 57.275 37.500 0.00 0.00 0.00 3.69
3618 5652 9.710900 CTTTGCCTTCTTCTTTTATTTTGGTAT 57.289 29.630 0.00 0.00 0.00 2.73
3647 5681 6.482898 AGTCTCACTCAAGATTATGATGCT 57.517 37.500 0.00 0.00 0.00 3.79
3767 5801 1.896220 TGAGAGAATGTGGGCACAAC 58.104 50.000 0.00 0.00 45.41 3.32
3792 5826 7.993867 CGTTCAGGTACGTATGATTATTCTTC 58.006 38.462 0.00 0.00 36.80 2.87
3970 6004 3.088532 AGTGGTGAGCTCTTGACTCTAG 58.911 50.000 16.19 0.00 35.12 2.43
4137 6171 6.651643 TGACCAAGTATGCGTAACATTTACTT 59.348 34.615 0.00 0.00 37.83 2.24
4205 6239 7.955918 ACTTGCATCTGATATACATCTACACA 58.044 34.615 0.00 0.00 31.93 3.72
4631 6665 1.728971 CAGTCTCTTGTTGACATCGCC 59.271 52.381 0.00 0.00 36.94 5.54
4817 6851 1.528586 CTGAAAGACTTGGACTGTGCG 59.471 52.381 0.00 0.00 34.07 5.34
5019 7053 5.116180 TGGCCACTATCTCTTGTAATTTCG 58.884 41.667 0.00 0.00 0.00 3.46
5208 7242 1.843851 TGTCAACCTCTCAAACAGGGT 59.156 47.619 0.00 0.00 35.01 4.34
5244 7278 5.972107 AGATTCTTGGAACACCAATTCTG 57.028 39.130 0.00 0.00 41.92 3.02
5290 7324 4.794003 GCATGCTCAAGTTTGTAAACAGCT 60.794 41.667 11.37 0.00 41.30 4.24
5495 7529 4.250464 TGATTAAGTTAACTGCACCTCCG 58.750 43.478 9.34 0.00 0.00 4.63
5700 7738 4.764679 TGCATCAATAAGTGTTGTCCAC 57.235 40.909 0.00 0.00 44.89 4.02
5747 7785 8.213518 ACGAACTATGTGCTTAATTCAATGAT 57.786 30.769 0.00 0.00 0.00 2.45
5750 7788 9.443283 GAACTATGTGCTTAATTCAATGATCAC 57.557 33.333 0.00 0.00 0.00 3.06
5757 7795 5.453587 GCTTAATTCAATGATCACGCTTGAC 59.546 40.000 9.27 0.00 33.38 3.18
5961 8067 1.002087 GTTTGTCGGATGGGACTGAGT 59.998 52.381 0.00 0.00 37.81 3.41
5962 8068 1.348064 TTGTCGGATGGGACTGAGTT 58.652 50.000 0.00 0.00 37.81 3.01
5963 8069 1.348064 TGTCGGATGGGACTGAGTTT 58.652 50.000 0.00 0.00 37.81 2.66
5965 8071 2.076863 GTCGGATGGGACTGAGTTTTG 58.923 52.381 0.00 0.00 34.09 2.44
5966 8072 0.804989 CGGATGGGACTGAGTTTTGC 59.195 55.000 0.00 0.00 0.00 3.68
5972 8846 4.057406 TGGGACTGAGTTTTGCAATTTG 57.943 40.909 0.00 0.00 0.00 2.32
6030 8904 2.624838 GGATGTGCATAATCTGTTGGGG 59.375 50.000 10.98 0.00 0.00 4.96
6053 9121 8.174085 GGGGATACATAGCTATATATGGTCTCT 58.826 40.741 9.26 0.00 37.45 3.10
6213 9281 1.029681 TGATACCGTCCATCGAGGTG 58.970 55.000 3.66 0.00 42.86 4.00
6241 9309 3.198635 TCCTGAGAGCAAATCGAAATCCT 59.801 43.478 0.00 0.00 0.00 3.24
6242 9310 3.944015 CCTGAGAGCAAATCGAAATCCTT 59.056 43.478 0.00 0.00 0.00 3.36
6246 9314 4.326826 AGAGCAAATCGAAATCCTTGTCA 58.673 39.130 0.00 0.00 0.00 3.58
6311 9379 1.588861 GAAACTAGCATCCGAGAACGC 59.411 52.381 0.00 0.00 38.29 4.84
6324 9392 2.434185 AACGCCGTGATGTCGCAT 60.434 55.556 0.00 0.00 0.00 4.73
6337 9405 3.610040 TGTCGCATTCAATCCTGTACT 57.390 42.857 0.00 0.00 0.00 2.73
6372 9444 7.123547 TGTCCCAGTCAATTTTACAAAGTCTTT 59.876 33.333 0.00 0.00 0.00 2.52
6553 9625 2.957060 TCGGAATCGACCAGTGAGT 58.043 52.632 0.00 0.00 40.88 3.41
6684 9765 3.823873 TGGTTGAACTGAACACTTGTGTT 59.176 39.130 17.63 17.63 34.29 3.32
6800 9881 8.948631 ACTGTTTGATTATACATACTCTGGTG 57.051 34.615 0.00 0.00 0.00 4.17
6801 9882 7.987458 ACTGTTTGATTATACATACTCTGGTGG 59.013 37.037 0.00 0.00 0.00 4.61
6802 9883 8.084985 TGTTTGATTATACATACTCTGGTGGA 57.915 34.615 0.00 0.00 0.00 4.02
6803 9884 7.985184 TGTTTGATTATACATACTCTGGTGGAC 59.015 37.037 0.00 0.00 0.00 4.02
6804 9885 7.914427 TTGATTATACATACTCTGGTGGACT 57.086 36.000 0.00 0.00 0.00 3.85
6946 10060 2.738000 CGAATCAGAGTGGAAGCCTCAG 60.738 54.545 0.00 0.00 0.00 3.35
6950 10064 0.036022 AGAGTGGAAGCCTCAGTTGC 59.964 55.000 0.00 0.00 0.00 4.17
6967 10081 0.250124 TGCGATCCGTGGTTTGTTCT 60.250 50.000 0.00 0.00 0.00 3.01
6974 10088 1.953686 CCGTGGTTTGTTCTGTCCATT 59.046 47.619 0.00 0.00 32.45 3.16
6992 10106 2.857380 TTTGTTGTGTGCGTGCGTGG 62.857 55.000 0.00 0.00 0.00 4.94
6994 10108 3.128188 TTGTGTGCGTGCGTGGTT 61.128 55.556 0.00 0.00 0.00 3.67
7051 10170 1.376812 GGTCGGCCAAACTGGGTAG 60.377 63.158 0.00 0.00 38.19 3.18
7081 10201 6.034150 TGTTATGTTATCAACGTCGTGATGAC 59.966 38.462 14.85 14.85 42.14 3.06
7110 10230 0.527565 ACCTGCGTTCCATTTCATGC 59.472 50.000 0.00 0.00 0.00 4.06
7141 10262 3.941483 GCACCACTGCAGACTAATAATGT 59.059 43.478 23.35 0.65 43.62 2.71
7221 10342 1.866853 GCCAGGGCTTCTTTGGTTCG 61.867 60.000 2.30 0.00 38.26 3.95
7227 10348 2.227194 GGCTTCTTTGGTTCGAAGGAA 58.773 47.619 0.00 0.00 37.65 3.36
7229 10350 3.255888 GGCTTCTTTGGTTCGAAGGAATT 59.744 43.478 0.00 0.00 37.65 2.17
7260 10381 4.953940 TTTGGAAGGATTTGAACCCTTG 57.046 40.909 0.00 0.00 42.43 3.61
7281 10402 3.332187 TGGGAATTTGTCCTGTGATGGTA 59.668 43.478 0.00 0.00 46.92 3.25
7286 10407 6.657541 GGAATTTGTCCTGTGATGGTAGTTTA 59.342 38.462 0.00 0.00 43.98 2.01
7291 10412 5.872617 TGTCCTGTGATGGTAGTTTAATTCG 59.127 40.000 0.00 0.00 0.00 3.34
7304 10425 7.973944 GGTAGTTTAATTCGCAGGATTGAAATT 59.026 33.333 0.00 0.00 0.00 1.82
7305 10426 7.816945 AGTTTAATTCGCAGGATTGAAATTG 57.183 32.000 0.00 0.00 0.00 2.32
7316 10437 7.331687 CGCAGGATTGAAATTGTTAGGATTTTT 59.668 33.333 0.00 0.00 0.00 1.94
7340 10461 4.771114 TCCATAGGGTCCATTTGTACTG 57.229 45.455 0.00 0.00 34.93 2.74
7348 10469 4.021544 GGGTCCATTTGTACTGCATTTTGA 60.022 41.667 0.00 0.00 0.00 2.69
7356 10477 8.776470 CATTTGTACTGCATTTTGAAGGAAAAT 58.224 29.630 0.00 0.00 43.77 1.82
7374 10495 7.670364 AGGAAAATTTTCATCCACCTACTTTG 58.330 34.615 27.53 0.00 38.92 2.77
7382 10503 1.156736 CCACCTACTTTGTTCCTGCG 58.843 55.000 0.00 0.00 0.00 5.18
7417 10538 4.918810 ATTCCTGCGTTTTGATAATCCC 57.081 40.909 0.00 0.00 0.00 3.85
7418 10539 2.285083 TCCTGCGTTTTGATAATCCCG 58.715 47.619 0.00 0.00 0.00 5.14
7477 10599 1.471684 AGTTGAGATACACCGACCGTC 59.528 52.381 0.00 0.00 0.00 4.79
7492 10614 2.314647 CGTCTGCGGGCGAAAGAAA 61.315 57.895 16.09 0.00 0.00 2.52
7511 10633 3.435186 GAAGCTGGCTTGCGACCC 61.435 66.667 12.79 0.00 36.26 4.46
7521 10643 1.219522 CTTGCGACCCGACGTTTTCT 61.220 55.000 0.00 0.00 35.59 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.239907 AGAGGAACCACTTGATAAGCCC 59.760 50.000 0.00 0.00 0.00 5.19
39 40 3.056393 ACAAAATATGTCCACGGAGTCGA 60.056 43.478 0.00 0.00 36.21 4.20
40 41 3.062099 CACAAAATATGTCCACGGAGTCG 59.938 47.826 0.00 0.00 38.87 4.18
104 105 7.615582 ACACCACTTATGTGATAACATGAAG 57.384 36.000 5.89 8.04 46.55 3.02
123 124 3.394940 TGGTAAGGTAACCATTCACACCA 59.605 43.478 0.00 0.00 44.68 4.17
147 149 7.917730 TGGGGAATCATCATTCATACAATTT 57.082 32.000 0.00 0.00 40.41 1.82
149 151 6.840181 TGTTGGGGAATCATCATTCATACAAT 59.160 34.615 0.00 0.00 40.41 2.71
159 161 3.623703 CAGTCATGTTGGGGAATCATCA 58.376 45.455 0.00 0.00 0.00 3.07
162 164 2.512692 CCAGTCATGTTGGGGAATCA 57.487 50.000 10.11 0.00 31.87 2.57
171 173 1.139058 GGCGATCTACCCAGTCATGTT 59.861 52.381 0.00 0.00 0.00 2.71
172 174 0.753262 GGCGATCTACCCAGTCATGT 59.247 55.000 0.00 0.00 0.00 3.21
177 179 1.761198 GGTAAAGGCGATCTACCCAGT 59.239 52.381 0.00 0.00 30.69 4.00
185 187 0.744414 TGCAGCTGGTAAAGGCGATC 60.744 55.000 17.12 0.00 0.00 3.69
194 196 1.756538 TCTGATTCGATGCAGCTGGTA 59.243 47.619 17.12 0.00 32.27 3.25
199 201 2.274437 TCAAGTCTGATTCGATGCAGC 58.726 47.619 9.48 0.00 32.27 5.25
200 202 7.880059 TTATATCAAGTCTGATTCGATGCAG 57.120 36.000 8.33 8.33 39.36 4.41
239 241 9.191995 GTGCAATGGTATTTTAGCAAATATACC 57.808 33.333 9.50 9.50 41.76 2.73
305 691 1.060729 TTGGTCGTCCCATTTCCAGA 58.939 50.000 0.00 0.00 44.74 3.86
318 704 1.848652 TAGTCTCCCTCCTTTGGTCG 58.151 55.000 0.00 0.00 0.00 4.79
565 958 5.504665 GCAATGTATTTGGACTCGATTGGAG 60.505 44.000 0.00 0.00 41.03 3.86
566 959 4.335315 GCAATGTATTTGGACTCGATTGGA 59.665 41.667 0.00 0.00 35.75 3.53
567 960 4.336433 AGCAATGTATTTGGACTCGATTGG 59.664 41.667 0.00 0.00 35.75 3.16
569 962 6.349300 AGTAGCAATGTATTTGGACTCGATT 58.651 36.000 0.00 0.00 35.75 3.34
571 964 5.339008 AGTAGCAATGTATTTGGACTCGA 57.661 39.130 0.00 0.00 35.75 4.04
572 965 7.715265 AATAGTAGCAATGTATTTGGACTCG 57.285 36.000 0.00 0.00 35.75 4.18
659 1215 5.335949 CGTACACAAAGCAGTTTCGTTTATG 59.664 40.000 0.00 0.00 0.00 1.90
660 1216 5.234757 TCGTACACAAAGCAGTTTCGTTTAT 59.765 36.000 0.00 0.00 0.00 1.40
661 1217 4.565962 TCGTACACAAAGCAGTTTCGTTTA 59.434 37.500 0.00 0.00 0.00 2.01
662 1218 3.371591 TCGTACACAAAGCAGTTTCGTTT 59.628 39.130 0.00 0.00 0.00 3.60
665 1221 3.788434 ATCGTACACAAAGCAGTTTCG 57.212 42.857 0.00 0.00 0.00 3.46
666 1222 5.090652 TGAATCGTACACAAAGCAGTTTC 57.909 39.130 0.00 0.00 0.00 2.78
667 1223 5.689383 ATGAATCGTACACAAAGCAGTTT 57.311 34.783 0.00 0.00 0.00 2.66
669 1225 6.593770 TGAATATGAATCGTACACAAAGCAGT 59.406 34.615 0.00 0.00 0.00 4.40
670 1226 7.003939 TGAATATGAATCGTACACAAAGCAG 57.996 36.000 0.00 0.00 0.00 4.24
671 1227 6.976636 TGAATATGAATCGTACACAAAGCA 57.023 33.333 0.00 0.00 0.00 3.91
672 1228 6.787515 CGATGAATATGAATCGTACACAAAGC 59.212 38.462 10.63 0.00 40.55 3.51
683 1239 8.228921 GTACCAGTGTACGATGAATATGAATC 57.771 38.462 0.00 0.00 38.14 2.52
697 1253 4.217983 AGCAGTCTAGTTGTACCAGTGTAC 59.782 45.833 0.00 0.00 46.22 2.90
698 1254 4.404640 AGCAGTCTAGTTGTACCAGTGTA 58.595 43.478 0.00 0.00 0.00 2.90
699 1255 3.231818 AGCAGTCTAGTTGTACCAGTGT 58.768 45.455 0.00 0.00 0.00 3.55
700 1256 3.944055 AGCAGTCTAGTTGTACCAGTG 57.056 47.619 0.00 0.00 0.00 3.66
701 1257 5.624738 GCATTAGCAGTCTAGTTGTACCAGT 60.625 44.000 0.00 0.00 41.58 4.00
702 1258 4.806247 GCATTAGCAGTCTAGTTGTACCAG 59.194 45.833 0.00 0.00 41.58 4.00
703 1259 4.466370 AGCATTAGCAGTCTAGTTGTACCA 59.534 41.667 0.00 0.00 45.49 3.25
704 1260 5.012328 AGCATTAGCAGTCTAGTTGTACC 57.988 43.478 0.00 0.00 45.49 3.34
705 1261 7.380065 GTCATAGCATTAGCAGTCTAGTTGTAC 59.620 40.741 0.00 0.00 45.49 2.90
706 1262 7.426410 GTCATAGCATTAGCAGTCTAGTTGTA 58.574 38.462 0.00 0.00 45.49 2.41
707 1263 6.276847 GTCATAGCATTAGCAGTCTAGTTGT 58.723 40.000 0.00 0.00 45.49 3.32
708 1264 5.694006 GGTCATAGCATTAGCAGTCTAGTTG 59.306 44.000 0.00 0.00 45.49 3.16
709 1265 5.221541 GGGTCATAGCATTAGCAGTCTAGTT 60.222 44.000 0.00 0.00 45.49 2.24
710 1266 4.282195 GGGTCATAGCATTAGCAGTCTAGT 59.718 45.833 0.00 0.00 45.49 2.57
711 1267 4.281941 TGGGTCATAGCATTAGCAGTCTAG 59.718 45.833 0.00 0.00 45.49 2.43
712 1268 4.039245 GTGGGTCATAGCATTAGCAGTCTA 59.961 45.833 0.00 0.00 45.49 2.59
713 1269 3.041211 TGGGTCATAGCATTAGCAGTCT 58.959 45.455 0.00 0.00 45.49 3.24
714 1270 3.134458 GTGGGTCATAGCATTAGCAGTC 58.866 50.000 0.00 0.00 45.49 3.51
715 1271 2.505407 TGTGGGTCATAGCATTAGCAGT 59.495 45.455 0.00 0.00 45.49 4.40
716 1272 3.198409 TGTGGGTCATAGCATTAGCAG 57.802 47.619 0.00 0.00 45.49 4.24
717 1273 3.643199 TTGTGGGTCATAGCATTAGCA 57.357 42.857 0.00 0.00 45.49 3.49
718 1274 3.947834 AGTTTGTGGGTCATAGCATTAGC 59.052 43.478 0.00 0.00 42.56 3.09
719 1275 5.185454 TCAGTTTGTGGGTCATAGCATTAG 58.815 41.667 0.00 0.00 0.00 1.73
720 1276 5.172687 TCAGTTTGTGGGTCATAGCATTA 57.827 39.130 0.00 0.00 0.00 1.90
721 1277 4.032960 TCAGTTTGTGGGTCATAGCATT 57.967 40.909 0.00 0.00 0.00 3.56
722 1278 3.719268 TCAGTTTGTGGGTCATAGCAT 57.281 42.857 0.00 0.00 0.00 3.79
723 1279 3.500448 TTCAGTTTGTGGGTCATAGCA 57.500 42.857 0.00 0.00 0.00 3.49
724 1280 4.009675 TGATTCAGTTTGTGGGTCATAGC 58.990 43.478 0.00 0.00 0.00 2.97
725 1281 5.882000 TGATGATTCAGTTTGTGGGTCATAG 59.118 40.000 0.00 0.00 33.48 2.23
726 1282 5.814481 TGATGATTCAGTTTGTGGGTCATA 58.186 37.500 0.00 0.00 33.48 2.15
727 1283 4.665451 TGATGATTCAGTTTGTGGGTCAT 58.335 39.130 0.00 0.00 34.99 3.06
728 1284 4.097551 TGATGATTCAGTTTGTGGGTCA 57.902 40.909 0.00 0.00 0.00 4.02
729 1285 5.047802 ACATTGATGATTCAGTTTGTGGGTC 60.048 40.000 0.00 0.00 32.27 4.46
730 1286 4.834496 ACATTGATGATTCAGTTTGTGGGT 59.166 37.500 0.00 0.00 32.27 4.51
731 1287 5.395682 ACATTGATGATTCAGTTTGTGGG 57.604 39.130 0.00 0.00 32.27 4.61
732 1288 7.225145 ACAAAACATTGATGATTCAGTTTGTGG 59.775 33.333 0.00 0.52 35.46 4.17
733 1289 8.133754 ACAAAACATTGATGATTCAGTTTGTG 57.866 30.769 0.00 5.86 35.46 3.33
734 1290 8.199449 AGACAAAACATTGATGATTCAGTTTGT 58.801 29.630 0.00 0.00 37.25 2.83
735 1291 8.583810 AGACAAAACATTGATGATTCAGTTTG 57.416 30.769 0.00 0.00 33.18 2.93
736 1292 8.636213 AGAGACAAAACATTGATGATTCAGTTT 58.364 29.630 0.00 0.00 33.85 2.66
737 1293 8.174733 AGAGACAAAACATTGATGATTCAGTT 57.825 30.769 0.00 0.00 32.27 3.16
738 1294 7.756395 AGAGACAAAACATTGATGATTCAGT 57.244 32.000 0.00 0.00 32.27 3.41
741 1297 9.430838 CGATTAGAGACAAAACATTGATGATTC 57.569 33.333 0.00 0.00 0.00 2.52
742 1298 8.950210 ACGATTAGAGACAAAACATTGATGATT 58.050 29.630 0.00 0.00 0.00 2.57
743 1299 8.498054 ACGATTAGAGACAAAACATTGATGAT 57.502 30.769 0.00 0.00 0.00 2.45
744 1300 7.905604 ACGATTAGAGACAAAACATTGATGA 57.094 32.000 0.00 0.00 0.00 2.92
745 1301 9.694520 CTTACGATTAGAGACAAAACATTGATG 57.305 33.333 0.00 0.00 0.00 3.07
746 1302 9.436957 ACTTACGATTAGAGACAAAACATTGAT 57.563 29.630 0.00 0.00 0.00 2.57
747 1303 8.708742 CACTTACGATTAGAGACAAAACATTGA 58.291 33.333 0.00 0.00 0.00 2.57
748 1304 8.495949 ACACTTACGATTAGAGACAAAACATTG 58.504 33.333 0.00 0.00 0.00 2.82
749 1305 8.603242 ACACTTACGATTAGAGACAAAACATT 57.397 30.769 0.00 0.00 0.00 2.71
750 1306 8.495949 CAACACTTACGATTAGAGACAAAACAT 58.504 33.333 0.00 0.00 0.00 2.71
751 1307 7.042321 CCAACACTTACGATTAGAGACAAAACA 60.042 37.037 0.00 0.00 0.00 2.83
752 1308 7.170320 TCCAACACTTACGATTAGAGACAAAAC 59.830 37.037 0.00 0.00 0.00 2.43
753 1309 7.170320 GTCCAACACTTACGATTAGAGACAAAA 59.830 37.037 0.00 0.00 0.00 2.44
754 1310 6.643770 GTCCAACACTTACGATTAGAGACAAA 59.356 38.462 0.00 0.00 0.00 2.83
755 1311 6.154445 GTCCAACACTTACGATTAGAGACAA 58.846 40.000 0.00 0.00 0.00 3.18
756 1312 5.618418 CGTCCAACACTTACGATTAGAGACA 60.618 44.000 0.00 0.00 38.89 3.41
757 1313 4.792189 CGTCCAACACTTACGATTAGAGAC 59.208 45.833 0.00 0.00 38.89 3.36
758 1314 4.142534 CCGTCCAACACTTACGATTAGAGA 60.143 45.833 0.00 0.00 38.89 3.10
759 1315 4.103357 CCGTCCAACACTTACGATTAGAG 58.897 47.826 0.00 0.00 38.89 2.43
760 1316 3.119388 CCCGTCCAACACTTACGATTAGA 60.119 47.826 0.00 0.00 38.89 2.10
761 1317 3.184541 CCCGTCCAACACTTACGATTAG 58.815 50.000 0.00 0.00 38.89 1.73
762 1318 2.094078 CCCCGTCCAACACTTACGATTA 60.094 50.000 0.00 0.00 38.89 1.75
763 1319 1.338389 CCCCGTCCAACACTTACGATT 60.338 52.381 0.00 0.00 38.89 3.34
764 1320 0.248289 CCCCGTCCAACACTTACGAT 59.752 55.000 0.00 0.00 38.89 3.73
765 1321 0.827089 TCCCCGTCCAACACTTACGA 60.827 55.000 0.00 0.00 38.89 3.43
766 1322 0.248289 ATCCCCGTCCAACACTTACG 59.752 55.000 0.00 0.00 36.42 3.18
767 1323 2.484742 AATCCCCGTCCAACACTTAC 57.515 50.000 0.00 0.00 0.00 2.34
768 1324 2.372504 TGAAATCCCCGTCCAACACTTA 59.627 45.455 0.00 0.00 0.00 2.24
769 1325 1.144093 TGAAATCCCCGTCCAACACTT 59.856 47.619 0.00 0.00 0.00 3.16
770 1326 0.768622 TGAAATCCCCGTCCAACACT 59.231 50.000 0.00 0.00 0.00 3.55
771 1327 1.743394 GATGAAATCCCCGTCCAACAC 59.257 52.381 0.00 0.00 37.38 3.32
772 1328 1.677518 CGATGAAATCCCCGTCCAACA 60.678 52.381 0.00 0.00 41.39 3.33
773 1329 1.014352 CGATGAAATCCCCGTCCAAC 58.986 55.000 0.00 0.00 41.39 3.77
774 1330 0.616371 ACGATGAAATCCCCGTCCAA 59.384 50.000 0.00 0.00 41.39 3.53
775 1331 1.137479 GTACGATGAAATCCCCGTCCA 59.863 52.381 0.00 0.00 41.39 4.02
776 1332 1.861971 GTACGATGAAATCCCCGTCC 58.138 55.000 0.00 0.00 41.39 4.79
777 1333 1.202336 ACGTACGATGAAATCCCCGTC 60.202 52.381 24.41 0.00 41.39 4.79
778 1334 0.819582 ACGTACGATGAAATCCCCGT 59.180 50.000 24.41 0.00 41.39 5.28
779 1335 2.780065 TACGTACGATGAAATCCCCG 57.220 50.000 24.41 0.00 41.39 5.73
780 1336 4.171754 GCTATACGTACGATGAAATCCCC 58.828 47.826 24.41 0.00 41.39 4.81
781 1337 4.801891 TGCTATACGTACGATGAAATCCC 58.198 43.478 24.41 1.57 41.39 3.85
782 1338 5.345202 CCTTGCTATACGTACGATGAAATCC 59.655 44.000 24.41 2.89 41.39 3.01
783 1339 5.919141 ACCTTGCTATACGTACGATGAAATC 59.081 40.000 24.41 5.14 40.89 2.17
784 1340 5.839621 ACCTTGCTATACGTACGATGAAAT 58.160 37.500 24.41 9.29 0.00 2.17
785 1341 5.252969 ACCTTGCTATACGTACGATGAAA 57.747 39.130 24.41 8.32 0.00 2.69
786 1342 4.553351 CGACCTTGCTATACGTACGATGAA 60.553 45.833 24.41 4.52 0.00 2.57
787 1343 3.059393 CGACCTTGCTATACGTACGATGA 60.059 47.826 24.41 7.02 0.00 2.92
788 1344 3.223953 CGACCTTGCTATACGTACGATG 58.776 50.000 24.41 9.48 0.00 3.84
789 1345 2.874701 ACGACCTTGCTATACGTACGAT 59.125 45.455 24.41 13.27 35.49 3.73
790 1346 2.279741 ACGACCTTGCTATACGTACGA 58.720 47.619 24.41 6.04 35.49 3.43
791 1347 2.744787 ACGACCTTGCTATACGTACG 57.255 50.000 15.01 15.01 35.49 3.67
792 1348 4.414852 TGAAACGACCTTGCTATACGTAC 58.585 43.478 0.00 0.00 36.20 3.67
793 1349 4.700268 TGAAACGACCTTGCTATACGTA 57.300 40.909 0.00 0.00 36.20 3.57
794 1350 3.581024 TGAAACGACCTTGCTATACGT 57.419 42.857 0.00 0.00 38.81 3.57
795 1351 6.255020 AGTTTATGAAACGACCTTGCTATACG 59.745 38.462 0.00 0.00 45.88 3.06
796 1352 7.535489 AGTTTATGAAACGACCTTGCTATAC 57.465 36.000 0.00 0.00 45.88 1.47
797 1353 8.472413 ACTAGTTTATGAAACGACCTTGCTATA 58.528 33.333 0.00 0.00 45.88 1.31
798 1354 7.328737 ACTAGTTTATGAAACGACCTTGCTAT 58.671 34.615 0.00 0.00 45.88 2.97
799 1355 6.694447 ACTAGTTTATGAAACGACCTTGCTA 58.306 36.000 0.00 0.00 45.88 3.49
800 1356 5.548406 ACTAGTTTATGAAACGACCTTGCT 58.452 37.500 0.00 0.00 45.88 3.91
801 1357 5.857822 ACTAGTTTATGAAACGACCTTGC 57.142 39.130 0.00 0.00 45.88 4.01
802 1358 9.146984 TGAATACTAGTTTATGAAACGACCTTG 57.853 33.333 0.00 0.00 45.88 3.61
803 1359 9.886132 ATGAATACTAGTTTATGAAACGACCTT 57.114 29.630 0.00 0.00 45.88 3.50
804 1360 9.886132 AATGAATACTAGTTTATGAAACGACCT 57.114 29.630 0.00 0.00 45.88 3.85
805 1361 9.916397 CAATGAATACTAGTTTATGAAACGACC 57.084 33.333 0.00 0.00 45.88 4.79
850 1406 4.931027 AGGTTGAGACTCTGGAGTACTA 57.069 45.455 3.68 0.00 42.66 1.82
855 1411 4.142049 GGACATAAGGTTGAGACTCTGGAG 60.142 50.000 3.68 0.00 0.00 3.86
877 1458 1.745489 GCCCGTCAAGTAAGCAGGG 60.745 63.158 0.00 0.00 41.65 4.45
885 1467 2.341176 GGTACACGCCCGTCAAGT 59.659 61.111 0.00 0.00 0.00 3.16
929 1511 4.283722 GGGAGAAGAGTTGAGTTAGGACAA 59.716 45.833 0.00 0.00 0.00 3.18
1198 1780 4.006989 CTGAAGGAGTCGAGAGAGAAAGA 58.993 47.826 0.00 0.00 43.49 2.52
1245 1827 1.421410 CGAGGAAACCATCGAAGCGG 61.421 60.000 0.00 0.00 41.40 5.52
1247 1829 1.716172 GCGAGGAAACCATCGAAGC 59.284 57.895 3.64 0.00 41.40 3.86
1248 1830 1.999051 CGCGAGGAAACCATCGAAG 59.001 57.895 0.00 0.00 41.40 3.79
1249 1831 4.178861 CGCGAGGAAACCATCGAA 57.821 55.556 0.00 0.00 41.40 3.71
1278 1860 2.187946 GCATCAGAGACCACCCGG 59.812 66.667 0.00 0.00 38.77 5.73
1297 1879 1.879380 TGCAGATTCAAACCAACTCCG 59.121 47.619 0.00 0.00 0.00 4.63
1390 1972 3.817148 TTTCGCCGGTTGAACTATTTC 57.183 42.857 1.90 0.00 0.00 2.17
1391 1973 4.481463 CAATTTCGCCGGTTGAACTATTT 58.519 39.130 1.90 0.00 0.00 1.40
1394 1976 1.807742 CCAATTTCGCCGGTTGAACTA 59.192 47.619 1.90 0.00 0.00 2.24
1396 1978 0.594110 TCCAATTTCGCCGGTTGAAC 59.406 50.000 1.90 0.00 0.00 3.18
1422 2004 7.186804 CCAGTTCACAAACAGTACAAGTAAAG 58.813 38.462 0.00 0.00 37.88 1.85
1448 2032 6.934083 TCAAATTCAAAATCAAAACCCTAGCC 59.066 34.615 0.00 0.00 0.00 3.93
1649 2323 1.067354 GCAAAAGGAGGGCATGTCAAG 60.067 52.381 0.00 0.00 0.00 3.02
1668 2343 3.764885 AAGAATCGTTGCATTACTGGC 57.235 42.857 0.00 0.00 0.00 4.85
1757 2432 9.899226 AAACTGCATATTTGTAAAAGAGACTTC 57.101 29.630 0.00 0.00 0.00 3.01
1758 2433 9.899226 GAAACTGCATATTTGTAAAAGAGACTT 57.101 29.630 1.05 0.00 0.00 3.01
1802 2500 7.880160 ACCTATATGCTCTAAATGCAAAACA 57.120 32.000 0.00 0.00 44.01 2.83
1823 2521 1.243902 CGCCACAAACATACCAACCT 58.756 50.000 0.00 0.00 0.00 3.50
1841 2539 5.484173 TTAGTGCATCATTTCCTAAAGCG 57.516 39.130 0.00 0.00 0.00 4.68
1902 2600 5.943706 TTTCGGAAATGGTGTCGAAATTA 57.056 34.783 0.00 0.00 43.58 1.40
1909 2607 3.442273 TGGCTATTTTCGGAAATGGTGTC 59.558 43.478 12.12 4.42 36.45 3.67
2007 2705 9.685828 GGCAGTTACAATGAATAAAGTTGTTAA 57.314 29.630 0.00 0.00 37.30 2.01
2223 2921 5.072741 TGCAAGAGAAAGATTAGCCAAACT 58.927 37.500 0.00 0.00 0.00 2.66
2237 2935 2.288457 CGAGTCAACTCCTGCAAGAGAA 60.288 50.000 19.22 1.42 39.79 2.87
2412 3113 8.472007 AAGAAAGGTTGTACACATGGAATAAA 57.528 30.769 0.00 0.00 0.00 1.40
2415 3116 6.306987 AGAAGAAAGGTTGTACACATGGAAT 58.693 36.000 0.00 0.00 0.00 3.01
2473 3174 9.391006 GAATGAACCCTTAACACATTATACAGA 57.609 33.333 0.00 0.00 32.50 3.41
2562 3263 7.484140 TCACATAGAAGCACTAATACTGTCAG 58.516 38.462 0.00 0.00 34.56 3.51
2778 3480 2.838736 ACACAGGACTTACAGTGCTTG 58.161 47.619 0.00 1.70 44.90 4.01
2875 3577 2.607187 AGATTAAGTGTCGCTGAACCG 58.393 47.619 0.00 0.00 0.00 4.44
2881 3583 7.067129 TGACTATGAAGTAGATTAAGTGTCGCT 59.933 37.037 0.00 0.00 35.56 4.93
2958 3660 4.385754 GCTCAGATTTAGGATGGAAAGGGT 60.386 45.833 0.00 0.00 0.00 4.34
2965 3667 4.272489 TGTTTGGCTCAGATTTAGGATGG 58.728 43.478 0.00 0.00 0.00 3.51
2967 3669 5.189180 GTCTGTTTGGCTCAGATTTAGGAT 58.811 41.667 9.77 0.00 42.63 3.24
3052 5085 2.040278 ACAAGCTATGAAGAACTGGGCA 59.960 45.455 0.00 0.00 0.00 5.36
3054 5087 6.428385 CTAAACAAGCTATGAAGAACTGGG 57.572 41.667 0.00 0.00 0.00 4.45
3299 5333 5.848406 AGACACAGCTAGCCAATATAGAAC 58.152 41.667 12.13 0.00 0.00 3.01
3359 5393 7.381139 GCTGCAAACAAGCTTACTAACATTTTA 59.619 33.333 0.00 0.00 34.99 1.52
3361 5395 5.691754 GCTGCAAACAAGCTTACTAACATTT 59.308 36.000 0.00 0.00 34.99 2.32
3363 5397 4.613622 CGCTGCAAACAAGCTTACTAACAT 60.614 41.667 0.00 0.00 34.99 2.71
3408 5442 6.818644 CCCTCATATACCCATCTAAAATGACG 59.181 42.308 0.00 0.00 0.00 4.35
3409 5443 7.607991 CACCCTCATATACCCATCTAAAATGAC 59.392 40.741 0.00 0.00 0.00 3.06
3618 5652 7.578203 TCATAATCTTGAGTGAGACTCTCCTA 58.422 38.462 3.68 0.00 45.27 2.94
3619 5653 6.430864 TCATAATCTTGAGTGAGACTCTCCT 58.569 40.000 3.68 0.00 45.27 3.69
3647 5681 4.262617 TGTACCGTTGCTGCCAATATTTA 58.737 39.130 0.00 0.00 32.75 1.40
3970 6004 8.784043 ACAAACAGTCATTACCTTATCTTTCAC 58.216 33.333 0.00 0.00 0.00 3.18
4003 6037 3.753272 AGCGAGTGAAATGCAACAGTATT 59.247 39.130 0.00 0.00 0.00 1.89
4009 6043 2.977405 AGAAGCGAGTGAAATGCAAC 57.023 45.000 0.00 0.00 0.00 4.17
4205 6239 9.661563 CATAATATGCAAAATCATAAAGCCCAT 57.338 29.630 0.00 0.00 33.19 4.00
4631 6665 0.441533 CAGCTGCTGTACTTCGCAAG 59.558 55.000 21.21 0.00 35.46 4.01
4817 6851 3.431572 CAGCAAGCTTGTCTGAAGAGTAC 59.568 47.826 30.70 12.61 35.66 2.73
5019 7053 7.448748 TTGATACTTTGTTAAAGCCTTCCTC 57.551 36.000 1.45 0.00 42.27 3.71
5182 7216 4.780815 TGTTTGAGAGGTTGACATCAGTT 58.219 39.130 0.00 0.00 0.00 3.16
5208 7242 4.065088 CAAGAATCTTGACAGACCGGAAA 58.935 43.478 17.50 0.00 0.00 3.13
5244 7278 1.005975 CGACAAAGAATCGATGACCGC 60.006 52.381 0.00 0.00 42.25 5.68
5495 7529 8.936864 AGCAAAAGTAATGTAATCTGTACTGTC 58.063 33.333 0.00 0.00 0.00 3.51
5700 7738 7.132213 TCGTCAGCAGTTTAAAATGAAGAAAG 58.868 34.615 19.18 11.89 0.00 2.62
5747 7785 0.657312 CAACAAGCAGTCAAGCGTGA 59.343 50.000 8.73 0.00 45.03 4.35
5750 7788 0.657312 TGACAACAAGCAGTCAAGCG 59.343 50.000 0.00 0.00 41.42 4.68
5757 7795 4.692155 TGTACAGATCATGACAACAAGCAG 59.308 41.667 0.00 0.00 0.00 4.24
5961 8067 4.330074 CACACGGGTTAACAAATTGCAAAA 59.670 37.500 1.71 0.00 0.00 2.44
5962 8068 3.865745 CACACGGGTTAACAAATTGCAAA 59.134 39.130 1.71 0.00 0.00 3.68
5963 8069 3.448686 CACACGGGTTAACAAATTGCAA 58.551 40.909 0.00 0.00 0.00 4.08
5965 8071 1.790043 GCACACGGGTTAACAAATTGC 59.210 47.619 8.10 5.43 0.00 3.56
5966 8072 3.085443 TGCACACGGGTTAACAAATTG 57.915 42.857 8.10 1.40 0.00 2.32
5972 8846 3.561503 GAAAAGATGCACACGGGTTAAC 58.438 45.455 0.00 0.00 0.00 2.01
6053 9121 5.164954 GTGCCCGCTTCAAAATATTGTTTA 58.835 37.500 0.00 0.00 37.79 2.01
6241 9309 1.404717 GGCTCTTGCTCTCGATGACAA 60.405 52.381 0.00 0.00 39.59 3.18
6242 9310 0.174389 GGCTCTTGCTCTCGATGACA 59.826 55.000 0.00 0.00 39.59 3.58
6246 9314 1.136695 CTCTTGGCTCTTGCTCTCGAT 59.863 52.381 0.00 0.00 39.59 3.59
6311 9379 1.003545 GGATTGAATGCGACATCACGG 60.004 52.381 0.00 0.00 0.00 4.94
6324 9392 7.987458 GGACATTGAGATAAGTACAGGATTGAA 59.013 37.037 0.00 0.00 0.00 2.69
6337 9405 8.956426 GTAAAATTGACTGGGACATTGAGATAA 58.044 33.333 0.00 0.00 38.20 1.75
6372 9444 1.045407 ACCTGAACTGCGTAGGAACA 58.955 50.000 5.26 1.21 35.55 3.18
6553 9625 3.117322 TGAACATGGAACCCCTGAAGAAA 60.117 43.478 0.00 0.00 0.00 2.52
6644 9725 1.533273 ACAGGACCGTACACCAGCT 60.533 57.895 0.00 0.00 0.00 4.24
6797 9878 0.395173 AAACACACCACCAGTCCACC 60.395 55.000 0.00 0.00 0.00 4.61
6798 9879 0.738389 CAAACACACCACCAGTCCAC 59.262 55.000 0.00 0.00 0.00 4.02
6799 9880 0.329931 ACAAACACACCACCAGTCCA 59.670 50.000 0.00 0.00 0.00 4.02
6800 9881 0.738389 CACAAACACACCACCAGTCC 59.262 55.000 0.00 0.00 0.00 3.85
6801 9882 1.132262 CACACAAACACACCACCAGTC 59.868 52.381 0.00 0.00 0.00 3.51
6802 9883 1.173043 CACACAAACACACCACCAGT 58.827 50.000 0.00 0.00 0.00 4.00
6803 9884 0.179140 GCACACAAACACACCACCAG 60.179 55.000 0.00 0.00 0.00 4.00
6804 9885 0.610509 AGCACACAAACACACCACCA 60.611 50.000 0.00 0.00 0.00 4.17
6946 10060 0.309612 AACAAACCACGGATCGCAAC 59.690 50.000 0.00 0.00 0.00 4.17
6950 10064 1.459592 GACAGAACAAACCACGGATCG 59.540 52.381 0.00 0.00 0.00 3.69
6967 10081 1.098869 ACGCACACAACAAATGGACA 58.901 45.000 0.00 0.00 0.00 4.02
6974 10088 2.099254 CACGCACGCACACAACAA 59.901 55.556 0.00 0.00 0.00 2.83
7034 10153 2.038837 GCTACCCAGTTTGGCCGAC 61.039 63.158 0.00 0.00 35.79 4.79
7051 10170 4.955590 CGACGTTGATAACATAACATGTGC 59.044 41.667 0.00 0.00 44.07 4.57
7141 10262 1.253100 TAGTGGTGATGCACGACAGA 58.747 50.000 13.69 0.70 43.68 3.41
7221 10342 8.200120 CCTTCCAAAATCCTATGAAATTCCTTC 58.800 37.037 0.00 0.00 34.31 3.46
7227 10348 9.270707 TCAAATCCTTCCAAAATCCTATGAAAT 57.729 29.630 0.00 0.00 0.00 2.17
7229 10350 8.531146 GTTCAAATCCTTCCAAAATCCTATGAA 58.469 33.333 0.00 0.00 0.00 2.57
7281 10402 7.378181 ACAATTTCAATCCTGCGAATTAAACT 58.622 30.769 0.00 0.00 0.00 2.66
7286 10407 6.152661 TCCTAACAATTTCAATCCTGCGAATT 59.847 34.615 0.00 0.00 0.00 2.17
7291 10412 8.552083 AAAAATCCTAACAATTTCAATCCTGC 57.448 30.769 0.00 0.00 0.00 4.85
7316 10437 5.949354 CAGTACAAATGGACCCTATGGAAAA 59.051 40.000 0.00 0.00 34.81 2.29
7319 10440 3.118038 GCAGTACAAATGGACCCTATGGA 60.118 47.826 0.00 0.00 34.81 3.41
7320 10441 3.214328 GCAGTACAAATGGACCCTATGG 58.786 50.000 0.00 0.00 37.80 2.74
7336 10457 8.954950 TGAAAATTTTCCTTCAAAATGCAGTA 57.045 26.923 24.51 1.17 42.86 2.74
7340 10461 7.804600 GTGGATGAAAATTTTCCTTCAAAATGC 59.195 33.333 24.51 15.80 42.86 3.56
7348 10469 7.855784 AAGTAGGTGGATGAAAATTTTCCTT 57.144 32.000 24.51 14.15 36.36 3.36
7356 10477 5.534654 CAGGAACAAAGTAGGTGGATGAAAA 59.465 40.000 0.00 0.00 0.00 2.29
7392 10513 6.262273 GGGATTATCAAAACGCAGGAATAGAA 59.738 38.462 0.00 0.00 0.00 2.10
7393 10514 5.763204 GGGATTATCAAAACGCAGGAATAGA 59.237 40.000 0.00 0.00 0.00 1.98
7394 10515 5.334105 CGGGATTATCAAAACGCAGGAATAG 60.334 44.000 0.00 0.00 0.00 1.73
7395 10516 4.513692 CGGGATTATCAAAACGCAGGAATA 59.486 41.667 0.00 0.00 0.00 1.75
7417 10538 1.856597 CCTCTTTAATCCGTAACCGCG 59.143 52.381 0.00 0.00 0.00 6.46
7418 10539 1.596260 GCCTCTTTAATCCGTAACCGC 59.404 52.381 0.00 0.00 0.00 5.68
7477 10599 1.837538 TTCGTTTCTTTCGCCCGCAG 61.838 55.000 0.00 0.00 0.00 5.18
7492 10614 3.044305 GTCGCAAGCCAGCTTCGT 61.044 61.111 17.47 0.00 33.42 3.85
7511 10633 0.782384 CAAGTCCGGAGAAAACGTCG 59.218 55.000 3.06 0.00 0.00 5.12
7521 10643 2.550606 CCGAAATTTTGACAAGTCCGGA 59.449 45.455 0.00 0.00 36.86 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.