Multiple sequence alignment - TraesCS2B01G375600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G375600 chr2B 100.000 8589 0 0 1 8589 538241111 538232523 0.000000e+00 15861.0
1 TraesCS2B01G375600 chr2B 89.744 78 6 2 7741 7817 26244431 26244355 1.970000e-16 99.0
2 TraesCS2B01G375600 chr2A 94.000 4183 171 23 1544 5685 600916500 600912357 0.000000e+00 6261.0
3 TraesCS2B01G375600 chr2A 94.500 2018 60 14 5767 7743 600912358 600910351 0.000000e+00 3064.0
4 TraesCS2B01G375600 chr2A 87.188 882 75 17 7743 8589 103128728 103129606 0.000000e+00 968.0
5 TraesCS2B01G375600 chr2A 92.438 648 23 13 885 1515 600917139 600916501 0.000000e+00 902.0
6 TraesCS2B01G375600 chr2A 85.284 897 78 20 7741 8586 709176288 709175395 0.000000e+00 876.0
7 TraesCS2B01G375600 chr2A 89.357 451 41 5 4 450 600918215 600917768 2.090000e-155 560.0
8 TraesCS2B01G375600 chr2A 88.889 108 8 4 5672 5777 96157500 96157605 7.000000e-26 130.0
9 TraesCS2B01G375600 chr2A 94.118 51 3 0 2204 2254 600915806 600915756 2.570000e-10 78.7
10 TraesCS2B01G375600 chr2D 95.236 1910 58 13 5767 7656 457408886 457406990 0.000000e+00 2992.0
11 TraesCS2B01G375600 chr2D 93.355 1520 60 11 2809 4304 457411846 457410344 0.000000e+00 2209.0
12 TraesCS2B01G375600 chr2D 94.968 1391 50 7 4300 5685 457410260 457408885 0.000000e+00 2163.0
13 TraesCS2B01G375600 chr2D 92.681 1257 61 7 1544 2775 457413096 457411846 0.000000e+00 1783.0
14 TraesCS2B01G375600 chr2D 89.689 805 71 8 4 803 457415179 457414382 0.000000e+00 1016.0
15 TraesCS2B01G375600 chr2D 94.565 644 21 9 885 1515 457413739 457413097 0.000000e+00 983.0
16 TraesCS2B01G375600 chr2D 91.176 102 6 3 5683 5783 115111459 115111558 1.500000e-27 135.0
17 TraesCS2B01G375600 chr2D 93.333 45 3 0 2208 2252 457412374 457412330 5.560000e-07 67.6
18 TraesCS2B01G375600 chr3B 89.534 879 61 13 7741 8589 157760254 157759377 0.000000e+00 1085.0
19 TraesCS2B01G375600 chr3B 90.000 100 9 1 5672 5771 804841855 804841757 2.520000e-25 128.0
20 TraesCS2B01G375600 chr3B 88.679 106 9 3 5665 5768 620988880 620988984 9.050000e-25 126.0
21 TraesCS2B01G375600 chr4D 88.571 875 72 10 7741 8589 95773812 95772940 0.000000e+00 1037.0
22 TraesCS2B01G375600 chr1D 87.612 896 63 26 7732 8584 285558965 285559855 0.000000e+00 996.0
23 TraesCS2B01G375600 chr1D 87.104 442 29 12 8174 8589 282964174 282963735 7.800000e-130 475.0
24 TraesCS2B01G375600 chr1D 93.333 90 5 1 5683 5771 322921723 322921634 1.950000e-26 132.0
25 TraesCS2B01G375600 chr5B 87.269 487 43 7 7743 8210 606906787 606907273 9.810000e-149 538.0
26 TraesCS2B01G375600 chr5B 86.275 408 34 3 8204 8589 606916116 606916523 2.870000e-114 424.0
27 TraesCS2B01G375600 chr5B 84.762 210 30 2 7790 7999 586267507 586267714 8.740000e-50 209.0
28 TraesCS2B01G375600 chr4A 87.816 435 29 4 8174 8586 713469341 713469773 1.000000e-133 488.0
29 TraesCS2B01G375600 chr4A 90.638 235 22 0 7740 7974 713468696 713468930 6.470000e-81 313.0
30 TraesCS2B01G375600 chr4A 84.768 151 17 3 6367 6517 693493656 693493800 6.950000e-31 147.0
31 TraesCS2B01G375600 chr4A 90.099 101 7 3 5669 5768 712733808 712733710 2.520000e-25 128.0
32 TraesCS2B01G375600 chr7D 87.889 289 32 3 7790 8077 124164811 124164525 3.840000e-88 337.0
33 TraesCS2B01G375600 chr7D 88.050 159 13 2 8091 8243 156224918 156225076 5.300000e-42 183.0
34 TraesCS2B01G375600 chr7D 79.147 211 27 10 6312 6515 33148058 33148258 7.000000e-26 130.0
35 TraesCS2B01G375600 chr7B 86.813 182 22 2 8409 8589 10817747 10817927 1.460000e-47 202.0
36 TraesCS2B01G375600 chr7B 85.955 178 17 4 8073 8243 118652367 118652543 5.300000e-42 183.0
37 TraesCS2B01G375600 chr7B 81.538 130 15 8 8004 8127 118652236 118652362 1.970000e-16 99.0
38 TraesCS2B01G375600 chr1B 81.132 212 35 5 8379 8588 587054170 587054378 1.920000e-36 165.0
39 TraesCS2B01G375600 chrUn 92.553 94 5 2 5677 5769 135090711 135090803 5.410000e-27 134.0
40 TraesCS2B01G375600 chrUn 92.553 94 5 2 5677 5769 152687567 152687659 5.410000e-27 134.0
41 TraesCS2B01G375600 chr5D 92.553 94 3 2 5680 5772 56467691 56467601 1.950000e-26 132.0
42 TraesCS2B01G375600 chr7A 82.308 130 14 8 8004 8127 210861006 210861132 4.240000e-18 104.0
43 TraesCS2B01G375600 chr6D 100.000 28 0 0 7203 7230 422809284 422809257 1.600000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G375600 chr2B 538232523 538241111 8588 True 15861.000000 15861 100.000000 1 8589 1 chr2B.!!$R2 8588
1 TraesCS2B01G375600 chr2A 600910351 600918215 7864 True 2173.140000 6261 92.882600 4 7743 5 chr2A.!!$R2 7739
2 TraesCS2B01G375600 chr2A 103128728 103129606 878 False 968.000000 968 87.188000 7743 8589 1 chr2A.!!$F2 846
3 TraesCS2B01G375600 chr2A 709175395 709176288 893 True 876.000000 876 85.284000 7741 8586 1 chr2A.!!$R1 845
4 TraesCS2B01G375600 chr2D 457406990 457415179 8189 True 1601.942857 2992 93.403857 4 7656 7 chr2D.!!$R1 7652
5 TraesCS2B01G375600 chr3B 157759377 157760254 877 True 1085.000000 1085 89.534000 7741 8589 1 chr3B.!!$R1 848
6 TraesCS2B01G375600 chr4D 95772940 95773812 872 True 1037.000000 1037 88.571000 7741 8589 1 chr4D.!!$R1 848
7 TraesCS2B01G375600 chr1D 285558965 285559855 890 False 996.000000 996 87.612000 7732 8584 1 chr1D.!!$F1 852
8 TraesCS2B01G375600 chr4A 713468696 713469773 1077 False 400.500000 488 89.227000 7740 8586 2 chr4A.!!$F2 846

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
777 1004 0.323999 AGGACCGCCAAAATTACCCC 60.324 55.000 0.00 0.0 36.29 4.95 F
1865 2711 0.324460 CCGAGGTTACCAGGGTCTCT 60.324 60.000 3.51 0.0 0.00 3.10 F
2888 3762 1.002069 TCAAGTTGATCCCAGCCCAT 58.998 50.000 0.08 0.0 0.00 4.00 F
4610 5602 0.827925 AGAACCAGTCACCGCAGAGA 60.828 55.000 0.00 0.0 0.00 3.10 F
5103 6095 0.390472 CTGCGGAAAGAGGACACTCC 60.390 60.000 0.00 0.0 45.11 3.85 F
5765 6767 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.0 0.00 4.30 F
7069 8078 2.124983 GCCTCGATCTGCTGGCAA 60.125 61.111 6.26 0.0 44.34 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 2786 0.107361 GGTAAGCCGCCAGGTACAAT 60.107 55.000 0.00 0.0 40.50 2.71 R
3061 3952 0.321653 GTGACTGCGGAGTTCCCAAT 60.322 55.000 12.08 0.0 30.16 3.16 R
4771 5763 0.662619 TCACTTTGTTGCAAGCCTCG 59.337 50.000 0.00 0.0 0.00 4.63 R
5580 6582 0.237498 GCTTTTTCCCGTCTTGGTCG 59.763 55.000 0.00 0.0 35.15 4.79 R
7069 8078 0.255318 CTCATCCTTGCTGCTTCCCT 59.745 55.000 0.00 0.0 0.00 4.20 R
7241 8250 2.035442 GCGCTTCTTCCCTGTGGAC 61.035 63.158 0.00 0.0 41.57 4.02 R
7902 8955 0.179084 CGGCGCAAGGAGGAAATCTA 60.179 55.000 10.83 0.0 38.28 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 3.135167 AGAAAAAGGTCCTACGGTCACAA 59.865 43.478 0.00 0.00 0.00 3.33
71 72 3.782656 AAAGGTCCTACGGTCACAATT 57.217 42.857 0.00 0.00 0.00 2.32
73 74 3.881937 AGGTCCTACGGTCACAATTAC 57.118 47.619 0.00 0.00 0.00 1.89
86 87 1.094785 CAATTACAACCCCGAGGCAG 58.905 55.000 0.00 0.00 36.11 4.85
94 95 2.597217 CCCGAGGCAGCACCAAAA 60.597 61.111 0.00 0.00 43.14 2.44
119 120 9.541884 AATACCCTACATTCACATTTTAAACCT 57.458 29.630 0.00 0.00 0.00 3.50
151 152 7.648142 TCACCAAAATTACTCTGAATTCACAC 58.352 34.615 3.38 0.00 0.00 3.82
165 166 1.267121 TCACACTCTGAACCCTAGCC 58.733 55.000 0.00 0.00 0.00 3.93
180 181 2.239654 CCTAGCCACCTCCAAAATCTCA 59.760 50.000 0.00 0.00 0.00 3.27
189 190 5.411361 CACCTCCAAAATCTCACGTTTATGA 59.589 40.000 0.00 0.00 0.00 2.15
212 213 0.449388 CACCAAGCTTTGAGATCGCC 59.551 55.000 4.25 0.00 0.00 5.54
318 322 3.053619 CCTAGCCACCTTTTATTCCCACT 60.054 47.826 0.00 0.00 0.00 4.00
323 327 4.407365 CCACCTTTTATTCCCACTCAACT 58.593 43.478 0.00 0.00 0.00 3.16
336 340 8.934023 TTCCCACTCAACTATTTGAAATAGTT 57.066 30.769 28.42 28.42 41.34 2.24
337 341 8.934023 TCCCACTCAACTATTTGAAATAGTTT 57.066 30.769 30.43 19.05 41.34 2.66
359 363 1.492599 TCTTGTCCACATCACAACCCA 59.507 47.619 0.00 0.00 30.49 4.51
420 424 6.741358 CCGCTAGCAAAACTCTAATTTTACAC 59.259 38.462 16.45 0.00 30.57 2.90
447 451 5.044846 ACTCTGCCAACCACCTAATATTTCT 60.045 40.000 0.00 0.00 0.00 2.52
489 655 5.637006 TTTATAGCACGCATGGAAAGTTT 57.363 34.783 0.00 0.00 0.00 2.66
494 660 4.069304 AGCACGCATGGAAAGTTTTACTA 58.931 39.130 0.00 0.00 0.00 1.82
524 690 7.272244 TGCTATCTTTTATTCTCGTCCATTCA 58.728 34.615 0.00 0.00 0.00 2.57
586 752 9.969001 TTCTTATGGTTTTACATATATAGCCCC 57.031 33.333 0.00 0.00 33.65 5.80
598 764 1.799157 ATAGCCCCAGCCACCAACAA 61.799 55.000 0.00 0.00 41.25 2.83
625 791 8.785184 ATACTCTAATTCTACACTTAAGCCCT 57.215 34.615 1.29 0.00 0.00 5.19
642 809 0.544697 CCTACCCGCCACCTAACATT 59.455 55.000 0.00 0.00 0.00 2.71
647 814 2.224818 ACCCGCCACCTAACATTTTGTA 60.225 45.455 0.00 0.00 0.00 2.41
649 816 3.445805 CCCGCCACCTAACATTTTGTATT 59.554 43.478 0.00 0.00 0.00 1.89
655 822 8.832521 CGCCACCTAACATTTTGTATTTATCTA 58.167 33.333 0.00 0.00 0.00 1.98
724 894 1.133790 ACCTTTATTCTCGTCCGTCCG 59.866 52.381 0.00 0.00 0.00 4.79
726 896 2.182825 CTTTATTCTCGTCCGTCCGTG 58.817 52.381 0.00 0.00 0.00 4.94
743 913 2.486128 CGTGCGAAACAGAAAATCTCG 58.514 47.619 0.00 0.00 0.00 4.04
756 926 0.744414 AATCTCGCATCACAACCCCG 60.744 55.000 0.00 0.00 0.00 5.73
777 1004 0.323999 AGGACCGCCAAAATTACCCC 60.324 55.000 0.00 0.00 36.29 4.95
786 1013 2.240279 CAAAATTACCCCGGGTTCACA 58.760 47.619 21.85 0.00 37.09 3.58
827 1642 5.475719 CAGCAAATCACTCCAATTTCACAT 58.524 37.500 0.00 0.00 0.00 3.21
829 1644 6.425721 CAGCAAATCACTCCAATTTCACATTT 59.574 34.615 0.00 0.00 0.00 2.32
831 1646 8.149647 AGCAAATCACTCCAATTTCACATTTAA 58.850 29.630 0.00 0.00 0.00 1.52
839 1654 5.366768 TCCAATTTCACATTTAACACCCCAA 59.633 36.000 0.00 0.00 0.00 4.12
841 1656 5.878406 ATTTCACATTTAACACCCCAACA 57.122 34.783 0.00 0.00 0.00 3.33
855 1670 2.353605 CCCCAACACACACAATATTGCC 60.354 50.000 15.48 0.00 0.00 4.52
856 1671 2.562298 CCCAACACACACAATATTGCCT 59.438 45.455 15.48 0.00 0.00 4.75
868 1683 7.862372 CACACAATATTGCCTTATTCGCTATTT 59.138 33.333 15.48 0.00 0.00 1.40
869 1684 8.413229 ACACAATATTGCCTTATTCGCTATTTT 58.587 29.630 15.48 0.00 0.00 1.82
870 1685 9.248291 CACAATATTGCCTTATTCGCTATTTTT 57.752 29.630 15.48 0.00 0.00 1.94
1391 2232 6.850823 TCGAATTCGAATCACTGTTTTTCTTG 59.149 34.615 27.36 0.00 46.30 3.02
1392 2233 6.086765 CGAATTCGAATCACTGTTTTTCTTGG 59.913 38.462 23.29 0.00 43.02 3.61
1393 2234 4.829064 TCGAATCACTGTTTTTCTTGGG 57.171 40.909 0.00 0.00 0.00 4.12
1410 2251 3.423154 GGGTCGCCTTCGCTGTTG 61.423 66.667 0.00 0.00 35.26 3.33
1424 2265 3.932710 TCGCTGTTGGTATCATTGTTCTC 59.067 43.478 0.00 0.00 0.00 2.87
1427 2268 4.154195 GCTGTTGGTATCATTGTTCTCGTT 59.846 41.667 0.00 0.00 0.00 3.85
1446 2287 7.642669 TCTCGTTTCCGTCGATATTTTATACT 58.357 34.615 0.00 0.00 36.73 2.12
1499 2340 0.811616 GCCCCTGCGTAGAATCACTG 60.812 60.000 0.53 0.00 0.00 3.66
1500 2341 0.537188 CCCCTGCGTAGAATCACTGT 59.463 55.000 0.53 0.00 0.00 3.55
1505 2346 4.466828 CCTGCGTAGAATCACTGTTTTTG 58.533 43.478 0.53 0.00 0.00 2.44
1506 2347 3.884169 TGCGTAGAATCACTGTTTTTGC 58.116 40.909 0.00 0.00 0.00 3.68
1508 2349 3.058224 GCGTAGAATCACTGTTTTTGCCT 60.058 43.478 0.00 0.00 0.00 4.75
1510 2351 5.147162 CGTAGAATCACTGTTTTTGCCTTC 58.853 41.667 0.00 0.00 0.00 3.46
1511 2352 4.228912 AGAATCACTGTTTTTGCCTTCG 57.771 40.909 0.00 0.00 0.00 3.79
1512 2353 2.422276 ATCACTGTTTTTGCCTTCGC 57.578 45.000 0.00 0.00 0.00 4.70
1513 2354 1.388547 TCACTGTTTTTGCCTTCGCT 58.611 45.000 0.00 0.00 35.36 4.93
1514 2355 2.566913 TCACTGTTTTTGCCTTCGCTA 58.433 42.857 0.00 0.00 35.36 4.26
1515 2356 3.146066 TCACTGTTTTTGCCTTCGCTAT 58.854 40.909 0.00 0.00 35.36 2.97
1516 2357 3.568007 TCACTGTTTTTGCCTTCGCTATT 59.432 39.130 0.00 0.00 35.36 1.73
1517 2358 4.757657 TCACTGTTTTTGCCTTCGCTATTA 59.242 37.500 0.00 0.00 35.36 0.98
1518 2359 5.414454 TCACTGTTTTTGCCTTCGCTATTAT 59.586 36.000 0.00 0.00 35.36 1.28
1519 2360 5.739161 CACTGTTTTTGCCTTCGCTATTATC 59.261 40.000 0.00 0.00 35.36 1.75
1520 2361 5.414454 ACTGTTTTTGCCTTCGCTATTATCA 59.586 36.000 0.00 0.00 35.36 2.15
1521 2362 5.636837 TGTTTTTGCCTTCGCTATTATCAC 58.363 37.500 0.00 0.00 35.36 3.06
1522 2363 5.414454 TGTTTTTGCCTTCGCTATTATCACT 59.586 36.000 0.00 0.00 35.36 3.41
1523 2364 5.484173 TTTTGCCTTCGCTATTATCACTG 57.516 39.130 0.00 0.00 35.36 3.66
1524 2365 3.819564 TGCCTTCGCTATTATCACTGT 57.180 42.857 0.00 0.00 35.36 3.55
1525 2366 4.137116 TGCCTTCGCTATTATCACTGTT 57.863 40.909 0.00 0.00 35.36 3.16
1526 2367 4.513442 TGCCTTCGCTATTATCACTGTTT 58.487 39.130 0.00 0.00 35.36 2.83
1527 2368 4.570772 TGCCTTCGCTATTATCACTGTTTC 59.429 41.667 0.00 0.00 35.36 2.78
1528 2369 4.811557 GCCTTCGCTATTATCACTGTTTCT 59.188 41.667 0.00 0.00 0.00 2.52
1529 2370 5.277058 GCCTTCGCTATTATCACTGTTTCTG 60.277 44.000 0.00 0.00 0.00 3.02
1530 2371 5.812642 CCTTCGCTATTATCACTGTTTCTGT 59.187 40.000 0.00 0.00 0.00 3.41
1531 2372 6.313905 CCTTCGCTATTATCACTGTTTCTGTT 59.686 38.462 0.00 0.00 0.00 3.16
1532 2373 7.491372 CCTTCGCTATTATCACTGTTTCTGTTA 59.509 37.037 0.00 0.00 0.00 2.41
1533 2374 7.987268 TCGCTATTATCACTGTTTCTGTTAG 57.013 36.000 0.00 0.00 0.00 2.34
1534 2375 6.978659 TCGCTATTATCACTGTTTCTGTTAGG 59.021 38.462 0.00 0.00 0.00 2.69
1535 2376 6.757010 CGCTATTATCACTGTTTCTGTTAGGT 59.243 38.462 0.00 0.00 0.00 3.08
1536 2377 7.919091 CGCTATTATCACTGTTTCTGTTAGGTA 59.081 37.037 0.00 0.00 0.00 3.08
1537 2378 9.250624 GCTATTATCACTGTTTCTGTTAGGTAG 57.749 37.037 0.00 0.00 0.00 3.18
1538 2379 9.751542 CTATTATCACTGTTTCTGTTAGGTAGG 57.248 37.037 0.00 0.00 0.00 3.18
1539 2380 7.786046 TTATCACTGTTTCTGTTAGGTAGGA 57.214 36.000 0.00 0.00 0.00 2.94
1540 2381 5.723672 TCACTGTTTCTGTTAGGTAGGAG 57.276 43.478 0.00 0.00 0.00 3.69
1541 2382 5.145564 TCACTGTTTCTGTTAGGTAGGAGT 58.854 41.667 0.00 0.00 0.00 3.85
1542 2383 5.010719 TCACTGTTTCTGTTAGGTAGGAGTG 59.989 44.000 0.00 0.00 0.00 3.51
1552 2393 0.613777 GGTAGGAGTGGTCACAAGGG 59.386 60.000 3.82 0.00 0.00 3.95
1666 2512 6.127925 TGGTTGCTATTTTGATTGCTAGACTG 60.128 38.462 0.00 0.00 0.00 3.51
1667 2513 6.094048 GGTTGCTATTTTGATTGCTAGACTGA 59.906 38.462 0.00 0.00 0.00 3.41
1688 2534 7.521529 ACTGAATACTCACAATTGATGTTTCG 58.478 34.615 13.59 11.02 41.46 3.46
1703 2549 1.065551 GTTTCGTTTGTGCAGGAAGCT 59.934 47.619 0.00 0.00 45.94 3.74
1811 2657 2.173569 GGATCTGCTAAACCACCCTCAT 59.826 50.000 0.00 0.00 0.00 2.90
1814 2660 1.281867 CTGCTAAACCACCCTCATCCA 59.718 52.381 0.00 0.00 0.00 3.41
1847 2693 3.815809 TGGTATAGCATGTTGCCTAACC 58.184 45.455 0.00 2.41 46.52 2.85
1865 2711 0.324460 CCGAGGTTACCAGGGTCTCT 60.324 60.000 3.51 0.00 0.00 3.10
1877 2723 1.524482 GGTCTCTGCACCAGATCCC 59.476 63.158 0.00 0.00 39.92 3.85
1880 2726 1.692042 CTCTGCACCAGATCCCCCT 60.692 63.158 0.00 0.00 39.92 4.79
1883 2729 1.143813 CTGCACCAGATCCCCCTTAT 58.856 55.000 0.00 0.00 32.44 1.73
1886 2732 1.202818 GCACCAGATCCCCCTTATGAC 60.203 57.143 0.00 0.00 0.00 3.06
1889 2735 1.344763 CCAGATCCCCCTTATGACGAC 59.655 57.143 0.00 0.00 0.00 4.34
1914 2760 2.828520 GTGATGAGGGTGAGTCTTCTCA 59.171 50.000 11.13 11.13 46.85 3.27
1927 2773 6.396450 TGAGTCTTCTCATGATGAACTCTTG 58.604 40.000 19.79 0.00 44.58 3.02
1939 2785 7.933215 TGATGAACTCTTGTCATGATGAAAT 57.067 32.000 0.00 0.00 0.00 2.17
1940 2786 9.623000 ATGATGAACTCTTGTCATGATGAAATA 57.377 29.630 0.00 0.00 30.61 1.40
1965 2811 1.153349 CTGGCGGCTTACCCTTCTC 60.153 63.158 11.43 0.00 0.00 2.87
1966 2812 2.189784 GGCGGCTTACCCTTCTCC 59.810 66.667 0.00 0.00 0.00 3.71
1967 2813 2.368011 GGCGGCTTACCCTTCTCCT 61.368 63.158 0.00 0.00 0.00 3.69
1978 2824 6.352823 GCTTACCCTTCTCCTATTTACTTGGT 60.353 42.308 0.00 0.00 0.00 3.67
2064 2910 2.929531 TGTTTGCAAAGCGAGTTTCA 57.070 40.000 13.26 1.14 0.00 2.69
2068 2914 3.435105 TTGCAAAGCGAGTTTCAATGT 57.565 38.095 0.00 0.00 0.00 2.71
2247 3117 4.585879 TGTGTGGGGAATAGCTTCTTTAC 58.414 43.478 0.00 0.00 0.00 2.01
2253 3123 5.652014 TGGGGAATAGCTTCTTTACATGTTG 59.348 40.000 2.30 0.00 0.00 3.33
2259 3129 9.463443 GAATAGCTTCTTTACATGTTGTTTTGT 57.537 29.630 2.30 0.00 0.00 2.83
2260 3130 8.801715 ATAGCTTCTTTACATGTTGTTTTGTG 57.198 30.769 2.30 0.00 0.00 3.33
2261 3131 6.630071 AGCTTCTTTACATGTTGTTTTGTGT 58.370 32.000 2.30 0.00 0.00 3.72
2262 3132 7.096551 AGCTTCTTTACATGTTGTTTTGTGTT 58.903 30.769 2.30 0.00 0.00 3.32
2263 3133 7.275560 AGCTTCTTTACATGTTGTTTTGTGTTC 59.724 33.333 2.30 0.00 0.00 3.18
2264 3134 7.275560 GCTTCTTTACATGTTGTTTTGTGTTCT 59.724 33.333 2.30 0.00 0.00 3.01
2265 3135 9.139174 CTTCTTTACATGTTGTTTTGTGTTCTT 57.861 29.630 2.30 0.00 0.00 2.52
2266 3136 8.682128 TCTTTACATGTTGTTTTGTGTTCTTC 57.318 30.769 2.30 0.00 0.00 2.87
2289 3159 5.903010 TCTGTGGGGAATAGCTTCTGTATAA 59.097 40.000 0.00 0.00 0.00 0.98
2348 3218 5.057149 AGACATGGTGTAGTTGTTGTCTTC 58.943 41.667 0.00 0.00 40.51 2.87
2568 3438 2.102588 ACTACTTTTCTGTGGAGCACGT 59.897 45.455 0.00 0.00 37.14 4.49
2693 3565 5.626809 GCTGTCCCTAACACTGAATACATCA 60.627 44.000 0.00 0.00 33.36 3.07
2800 3674 6.737720 ATTGATCACATCTGCTTACCTAGA 57.262 37.500 0.00 0.00 0.00 2.43
2888 3762 1.002069 TCAAGTTGATCCCAGCCCAT 58.998 50.000 0.08 0.00 0.00 4.00
2921 3795 8.193953 ACAATGATAACTCCATCAAACCTTTT 57.806 30.769 0.00 0.00 38.39 2.27
3065 3956 8.700722 TGGATTGACGATTTATTTTCAATTGG 57.299 30.769 5.42 0.00 38.51 3.16
3066 3957 7.763528 TGGATTGACGATTTATTTTCAATTGGG 59.236 33.333 5.42 0.00 38.51 4.12
3067 3958 7.978975 GGATTGACGATTTATTTTCAATTGGGA 59.021 33.333 5.42 0.00 38.51 4.37
3068 3959 9.364989 GATTGACGATTTATTTTCAATTGGGAA 57.635 29.630 5.42 1.30 38.51 3.97
3069 3960 8.527567 TTGACGATTTATTTTCAATTGGGAAC 57.472 30.769 5.42 0.00 0.00 3.62
3070 3961 7.891561 TGACGATTTATTTTCAATTGGGAACT 58.108 30.769 5.42 0.00 0.00 3.01
3071 3962 8.026607 TGACGATTTATTTTCAATTGGGAACTC 58.973 33.333 5.42 0.00 0.00 3.01
3141 4032 6.314784 GTGCGTATTTTCTTGTGCTTATTCT 58.685 36.000 0.00 0.00 0.00 2.40
3369 4260 8.518702 CCTCCTTCAGAATCTTAAAAAGGAAAG 58.481 37.037 11.76 5.75 41.13 2.62
3405 4296 7.011773 GCATCGATACATTGTTAGCATTACTG 58.988 38.462 0.00 0.00 0.00 2.74
3408 4299 6.700081 TCGATACATTGTTAGCATTACTGGAC 59.300 38.462 0.00 0.00 0.00 4.02
3412 4303 9.845740 ATACATTGTTAGCATTACTGGACATAA 57.154 29.630 0.00 0.00 0.00 1.90
3464 4355 4.916041 ACTTGACATTCCAGGATTCTCA 57.084 40.909 0.00 0.00 0.00 3.27
3528 4419 2.894126 TCCTGAAAAATTAAAGCCGGCA 59.106 40.909 31.54 8.23 0.00 5.69
3630 4521 4.555511 GCTGGAAGAGACAACAACATTGAC 60.556 45.833 0.00 0.00 34.07 3.18
3698 4589 7.765695 ACAGTTGATGACACCTATTCAAAAT 57.234 32.000 0.00 0.00 30.51 1.82
3903 4801 5.722021 AACTGTTTTGACTTTTGACAGGT 57.278 34.783 6.73 0.00 41.42 4.00
3928 4826 5.189928 TCCAGTGTCAGTTTTGCTTAAGAA 58.810 37.500 6.67 0.00 0.00 2.52
3945 4843 7.170998 TGCTTAAGAAGTACTGCAGTTTAGTTC 59.829 37.037 27.06 23.86 0.00 3.01
3983 4883 1.202879 TGTGAAGGGATTGTGGACACC 60.203 52.381 0.00 0.00 0.00 4.16
3993 4893 2.910688 TGTGGACACCTTCAAGTCTC 57.089 50.000 0.00 0.00 35.18 3.36
4044 4944 8.576442 CCAGAATAGGTTTAACTTTGTGATTGT 58.424 33.333 0.00 0.00 0.00 2.71
4183 5083 4.250116 TGCATGATTTGGTTTGTGGTAC 57.750 40.909 0.00 0.00 0.00 3.34
4187 5087 2.625790 TGATTTGGTTTGTGGTACAGCC 59.374 45.455 0.00 0.00 41.80 4.85
4196 5096 5.650703 GGTTTGTGGTACAGCCTATAACATT 59.349 40.000 0.00 0.00 41.80 2.71
4197 5097 6.152154 GGTTTGTGGTACAGCCTATAACATTT 59.848 38.462 0.00 0.00 41.80 2.32
4265 5165 4.826556 AGCCAGAGTGAGTTTTGATAGAC 58.173 43.478 0.00 0.00 0.00 2.59
4284 5184 3.138304 GACATGCAGTATATTTCGGCCA 58.862 45.455 2.24 0.00 0.00 5.36
4285 5185 2.878406 ACATGCAGTATATTTCGGCCAC 59.122 45.455 2.24 0.00 0.00 5.01
4372 5364 4.101585 TGTTTCTGATGAGTCACCTGAGTT 59.898 41.667 0.00 0.00 0.00 3.01
4381 5373 3.471680 AGTCACCTGAGTTTCTGCTTTC 58.528 45.455 0.00 0.00 0.00 2.62
4388 5380 6.535150 CACCTGAGTTTCTGCTTTCGATATTA 59.465 38.462 0.00 0.00 0.00 0.98
4474 5466 7.607223 CAGGAATCTTCAAAGTCAGAGAAAGAT 59.393 37.037 0.00 0.00 0.00 2.40
4496 5488 4.553330 GGACAAGATGGAAGTCCTACAA 57.447 45.455 0.00 0.00 46.45 2.41
4527 5519 6.065976 TCCAAATGGATTAGCTTCTTCTGA 57.934 37.500 0.00 0.00 39.78 3.27
4528 5520 6.484288 TCCAAATGGATTAGCTTCTTCTGAA 58.516 36.000 0.00 0.00 39.78 3.02
4555 5547 5.627182 AATCTGAACTGCCTACTGATGAT 57.373 39.130 0.00 0.00 0.00 2.45
4559 5551 5.893824 TCTGAACTGCCTACTGATGATAAGA 59.106 40.000 0.00 0.00 0.00 2.10
4561 5553 6.946340 TGAACTGCCTACTGATGATAAGAAA 58.054 36.000 0.00 0.00 0.00 2.52
4604 5596 1.961277 GCACCAGAACCAGTCACCG 60.961 63.158 0.00 0.00 0.00 4.94
4610 5602 0.827925 AGAACCAGTCACCGCAGAGA 60.828 55.000 0.00 0.00 0.00 3.10
4612 5604 2.100879 AACCAGTCACCGCAGAGACC 62.101 60.000 0.00 0.00 33.91 3.85
4764 5756 4.440880 GCAAATGGTGGCAATAATAAGCA 58.559 39.130 0.00 0.00 0.00 3.91
4771 5763 3.002348 GTGGCAATAATAAGCAGACGGTC 59.998 47.826 0.00 0.00 0.00 4.79
4788 5780 0.663153 GTCGAGGCTTGCAACAAAGT 59.337 50.000 0.00 0.00 0.00 2.66
4789 5781 0.662619 TCGAGGCTTGCAACAAAGTG 59.337 50.000 0.00 0.00 0.00 3.16
4791 5783 1.597937 CGAGGCTTGCAACAAAGTGAC 60.598 52.381 0.00 0.00 0.00 3.67
4792 5784 1.405105 GAGGCTTGCAACAAAGTGACA 59.595 47.619 0.00 0.00 0.00 3.58
4801 5793 4.152223 TGCAACAAAGTGACAGATGATACG 59.848 41.667 0.00 0.00 0.00 3.06
4828 5820 2.432510 GCCTCTTGATAGTACACCTGCT 59.567 50.000 0.00 0.00 0.00 4.24
4884 5876 4.181578 GCTGTAGATAAACCAAAGCGAGA 58.818 43.478 0.00 0.00 0.00 4.04
4987 5979 0.976641 CAGGCAGTACTTCTGGTGGA 59.023 55.000 12.79 0.00 43.78 4.02
5078 6070 1.734388 GAAGCAACCAACGGCCAGTT 61.734 55.000 2.24 5.24 45.45 3.16
5103 6095 0.390472 CTGCGGAAAGAGGACACTCC 60.390 60.000 0.00 0.00 45.11 3.85
5134 6126 5.341872 AAGACACTGATGAAGATCTCAGG 57.658 43.478 12.75 5.92 42.56 3.86
5224 6216 4.016444 GGTATTGATTGCTGAAGGTTGGA 58.984 43.478 0.00 0.00 0.00 3.53
5245 6237 6.808829 TGGATTTCTGCTTTGCCTATTTATG 58.191 36.000 0.00 0.00 0.00 1.90
5298 6290 4.289672 AGGTGGTTTGGAGAAGTGTCATAT 59.710 41.667 0.00 0.00 0.00 1.78
5434 6426 6.707290 TGTGTAACCATGTATGCTCTAGTTT 58.293 36.000 0.00 0.00 34.36 2.66
5475 6477 7.338710 AGCTTTAGTTCCATCAGCAGTATTAA 58.661 34.615 0.00 0.00 32.58 1.40
5476 6478 7.995488 AGCTTTAGTTCCATCAGCAGTATTAAT 59.005 33.333 0.00 0.00 32.58 1.40
5477 6479 8.286097 GCTTTAGTTCCATCAGCAGTATTAATC 58.714 37.037 0.00 0.00 0.00 1.75
5478 6480 9.553064 CTTTAGTTCCATCAGCAGTATTAATCT 57.447 33.333 0.00 0.00 0.00 2.40
5479 6481 9.905713 TTTAGTTCCATCAGCAGTATTAATCTT 57.094 29.630 0.00 0.00 0.00 2.40
5480 6482 9.905713 TTAGTTCCATCAGCAGTATTAATCTTT 57.094 29.630 0.00 0.00 0.00 2.52
5482 6484 9.905713 AGTTCCATCAGCAGTATTAATCTTTAA 57.094 29.630 0.00 0.00 0.00 1.52
5580 6582 4.214332 GGAAATGGCGTCTCCTAAATCATC 59.786 45.833 0.00 0.00 35.26 2.92
5689 6691 8.496707 ACACACTTTTATTAATTACTACCCCG 57.503 34.615 0.00 0.00 0.00 5.73
5690 6692 8.102676 ACACACTTTTATTAATTACTACCCCGT 58.897 33.333 0.00 0.00 0.00 5.28
5691 6693 8.606602 CACACTTTTATTAATTACTACCCCGTC 58.393 37.037 0.00 0.00 0.00 4.79
5692 6694 8.542926 ACACTTTTATTAATTACTACCCCGTCT 58.457 33.333 0.00 0.00 0.00 4.18
5693 6695 9.387257 CACTTTTATTAATTACTACCCCGTCTT 57.613 33.333 0.00 0.00 0.00 3.01
5694 6696 9.605275 ACTTTTATTAATTACTACCCCGTCTTC 57.395 33.333 0.00 0.00 0.00 2.87
5695 6697 8.962884 TTTTATTAATTACTACCCCGTCTTCC 57.037 34.615 0.00 0.00 0.00 3.46
5696 6698 5.557576 ATTAATTACTACCCCGTCTTCCC 57.442 43.478 0.00 0.00 0.00 3.97
5697 6699 2.555732 ATTACTACCCCGTCTTCCCA 57.444 50.000 0.00 0.00 0.00 4.37
5698 6700 2.555732 TTACTACCCCGTCTTCCCAT 57.444 50.000 0.00 0.00 0.00 4.00
5699 6701 3.686227 TTACTACCCCGTCTTCCCATA 57.314 47.619 0.00 0.00 0.00 2.74
5700 6702 2.555732 ACTACCCCGTCTTCCCATAA 57.444 50.000 0.00 0.00 0.00 1.90
5701 6703 3.056201 ACTACCCCGTCTTCCCATAAT 57.944 47.619 0.00 0.00 0.00 1.28
5702 6704 2.704065 ACTACCCCGTCTTCCCATAATG 59.296 50.000 0.00 0.00 0.00 1.90
5703 6705 1.591768 ACCCCGTCTTCCCATAATGT 58.408 50.000 0.00 0.00 0.00 2.71
5704 6706 2.766736 ACCCCGTCTTCCCATAATGTA 58.233 47.619 0.00 0.00 0.00 2.29
5705 6707 3.116959 ACCCCGTCTTCCCATAATGTAA 58.883 45.455 0.00 0.00 0.00 2.41
5706 6708 3.135895 ACCCCGTCTTCCCATAATGTAAG 59.864 47.826 0.00 0.00 0.00 2.34
5707 6709 3.389983 CCCCGTCTTCCCATAATGTAAGA 59.610 47.826 0.00 0.00 0.00 2.10
5708 6710 4.377897 CCCGTCTTCCCATAATGTAAGAC 58.622 47.826 10.55 10.55 42.74 3.01
5709 6711 4.141801 CCCGTCTTCCCATAATGTAAGACA 60.142 45.833 16.95 0.00 45.17 3.41
5710 6712 5.454755 CCCGTCTTCCCATAATGTAAGACAT 60.455 44.000 16.95 0.00 45.17 3.06
5712 6714 6.542370 CCGTCTTCCCATAATGTAAGACATTT 59.458 38.462 9.92 0.00 45.80 2.32
5713 6715 7.067008 CCGTCTTCCCATAATGTAAGACATTTT 59.933 37.037 9.92 0.33 45.80 1.82
5714 6716 8.458843 CGTCTTCCCATAATGTAAGACATTTTT 58.541 33.333 9.92 0.00 45.80 1.94
5760 6762 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
5761 6763 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
5762 6764 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
5763 6765 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
5764 6766 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
5765 6767 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
5866 6868 4.061596 CAGGTTCCTCAGTCAAAGAAGAC 58.938 47.826 0.00 0.00 38.81 3.01
5939 6941 4.756642 CCTGATGACAAAAAGTGAGTGCTA 59.243 41.667 0.00 0.00 0.00 3.49
6035 7039 6.507023 CAAGATTTGTAAGCCAACACTTCTT 58.493 36.000 6.75 6.75 33.96 2.52
6048 7052 5.812642 CCAACACTTCTTTGTCGAGCTATAT 59.187 40.000 0.00 0.00 0.00 0.86
6081 7085 4.568152 TGTCCTTGCTTTAACTTTCTGC 57.432 40.909 0.00 0.00 0.00 4.26
6082 7086 3.951037 TGTCCTTGCTTTAACTTTCTGCA 59.049 39.130 0.00 0.00 0.00 4.41
6105 7109 6.016860 GCATGCATAGTTATGTCATTTCCTCA 60.017 38.462 14.21 0.00 36.11 3.86
6107 7111 7.320443 TGCATAGTTATGTCATTTCCTCAAC 57.680 36.000 0.00 0.00 36.11 3.18
6108 7112 6.883756 TGCATAGTTATGTCATTTCCTCAACA 59.116 34.615 0.00 0.00 36.11 3.33
6230 7234 3.814842 CACAAGGTGCACATTCAGTAGAA 59.185 43.478 20.43 0.00 38.31 2.10
6268 7272 3.140144 TCTCCATGTTTCTTCCTTTGGGT 59.860 43.478 0.00 0.00 0.00 4.51
6294 7298 5.751028 GTCCATGAGCTACTAACAAGATGTC 59.249 44.000 0.00 0.00 0.00 3.06
6305 7309 6.234177 ACTAACAAGATGTCTTCCCTTTCTG 58.766 40.000 0.00 0.00 33.11 3.02
6317 7321 7.660208 TGTCTTCCCTTTCTGTTATGTTACTTC 59.340 37.037 0.00 0.00 0.00 3.01
6362 7366 3.871006 GACGGTGATATTGAACATCTGCA 59.129 43.478 0.00 0.00 0.00 4.41
6439 7443 2.613977 GCGGTGATGCTGCTATTATCCT 60.614 50.000 0.00 0.00 45.76 3.24
6445 7449 6.293845 GGTGATGCTGCTATTATCCTCTTTTG 60.294 42.308 0.00 0.00 0.00 2.44
6510 7517 6.959904 AGAATCCTAATGCAGCATCTGATAT 58.040 36.000 8.77 0.00 32.44 1.63
6517 7524 4.075963 TGCAGCATCTGATATGTAAGCA 57.924 40.909 0.00 0.00 32.44 3.91
6581 7588 5.281693 TGACAATCGACATTTTAGCACTG 57.718 39.130 0.00 0.00 0.00 3.66
6594 7601 9.248291 ACATTTTAGCACTGAAAACTTTGTATG 57.752 29.630 0.00 0.00 0.00 2.39
6763 7770 6.551601 TCAAGACTTAGGTGGATCCTTAGATC 59.448 42.308 14.23 2.38 45.67 2.75
6842 7849 5.729732 GCATGACAATCTGAGTATGCTGTTG 60.730 44.000 0.00 0.00 38.23 3.33
6931 7940 2.623915 GCAAGCAGGACAGCACTGG 61.624 63.158 2.21 0.00 36.48 4.00
7065 8074 2.202987 GGTGGCCTCGATCTGCTG 60.203 66.667 3.32 0.00 0.00 4.41
7069 8078 2.124983 GCCTCGATCTGCTGGCAA 60.125 61.111 6.26 0.00 44.34 4.52
7188 8197 2.712709 GGAAGCCCAAGGAGAAAGTAC 58.287 52.381 0.00 0.00 0.00 2.73
7241 8250 2.509336 CCGGTGTCTGCTAAGGCG 60.509 66.667 0.00 0.00 42.25 5.52
7319 8328 4.039366 ACCAGCTAGCTAATAGTTGTAGCC 59.961 45.833 18.86 0.00 44.22 3.93
7487 8506 4.081087 TGGGTTACCTTGCTATCTGAGTTC 60.081 45.833 0.00 0.00 37.76 3.01
7569 8595 9.849166 TTTTCGAGTTCTTTTTACAGTCATTTT 57.151 25.926 0.00 0.00 0.00 1.82
7584 8611 7.968246 ACAGTCATTTTCTATCGACTTCATTG 58.032 34.615 0.00 0.00 36.60 2.82
7585 8612 6.904011 CAGTCATTTTCTATCGACTTCATTGC 59.096 38.462 0.00 0.00 36.60 3.56
7586 8613 6.820656 AGTCATTTTCTATCGACTTCATTGCT 59.179 34.615 0.00 0.00 35.18 3.91
7587 8614 7.335422 AGTCATTTTCTATCGACTTCATTGCTT 59.665 33.333 0.00 0.00 35.18 3.91
7588 8615 7.965107 GTCATTTTCTATCGACTTCATTGCTTT 59.035 33.333 0.00 0.00 0.00 3.51
7589 8616 7.964559 TCATTTTCTATCGACTTCATTGCTTTG 59.035 33.333 0.00 0.00 0.00 2.77
7590 8617 5.801350 TTCTATCGACTTCATTGCTTTGG 57.199 39.130 0.00 0.00 0.00 3.28
7591 8618 4.832248 TCTATCGACTTCATTGCTTTGGT 58.168 39.130 0.00 0.00 0.00 3.67
7592 8619 5.245531 TCTATCGACTTCATTGCTTTGGTT 58.754 37.500 0.00 0.00 0.00 3.67
7617 8644 3.118738 AGTTGTCTCTTTTCTCCACGTGT 60.119 43.478 15.65 0.00 0.00 4.49
7657 8684 3.178046 TCAGGTATCTTGCCCTGTTACA 58.822 45.455 5.66 0.00 46.79 2.41
7763 8815 2.046314 CAACTCCAACGGGGCGAT 60.046 61.111 0.00 0.00 36.21 4.58
7769 8821 1.752694 CCAACGGGGCGATCCAAAT 60.753 57.895 0.00 0.00 37.22 2.32
7808 8861 0.461693 TTTTCGTCCGTTTGGGTCGT 60.462 50.000 0.00 0.00 45.77 4.34
7821 8874 2.694760 GGTCGTCCGTTCGCCTAGT 61.695 63.158 0.00 0.00 0.00 2.57
7902 8955 1.267806 CAAAGCGGACAAGCAAGATGT 59.732 47.619 0.00 0.00 40.15 3.06
7915 8968 5.707066 AGCAAGATGTAGATTTCCTCCTT 57.293 39.130 0.00 0.00 0.00 3.36
7941 8994 2.677003 CGCGTTCCTTTGTCGCCAT 61.677 57.895 0.00 0.00 45.85 4.40
8052 9105 2.177531 CCGTCCACGTCGTCGAAT 59.822 61.111 9.47 0.00 40.62 3.34
8058 9111 1.067425 TCCACGTCGTCGAATTGGATT 60.067 47.619 18.04 0.00 35.73 3.01
8188 9452 2.325393 ATTTAGGCGGAGGAAGGCGG 62.325 60.000 0.00 0.00 39.33 6.13
8205 9469 1.878102 GCGGTGAGGAAGAAGAAGCAA 60.878 52.381 0.00 0.00 0.00 3.91
8293 9606 1.202498 CGCCTGAGAAGAGATGCATCA 60.202 52.381 27.81 6.60 0.00 3.07
8294 9607 2.485903 GCCTGAGAAGAGATGCATCAG 58.514 52.381 27.81 15.79 37.68 2.90
8414 9760 4.135153 CAGGGGCGGACACGAGAG 62.135 72.222 0.00 0.00 44.60 3.20
8418 9764 3.379445 GGCGGACACGAGAGGGAA 61.379 66.667 0.00 0.00 44.60 3.97
8428 9774 1.881903 CGAGAGGGAAGCAGCAGACA 61.882 60.000 0.00 0.00 0.00 3.41
8476 9822 4.612536 CCGCGCGGATCCATTTGC 62.613 66.667 44.86 5.89 37.50 3.68
8488 9834 1.902508 TCCATTTGCGGCCCATTTTTA 59.097 42.857 0.00 0.00 0.00 1.52
8519 9865 1.376037 GTCGGGAGGGCAGACAAAG 60.376 63.158 0.00 0.00 35.19 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.859325 TTAATCTATGGTGTTTTAGTGAGGC 57.141 36.000 0.00 0.00 0.00 4.70
28 29 8.907222 TTTTTCTACGTCAACTAGGGTTTAAT 57.093 30.769 0.00 0.00 32.73 1.40
62 63 2.081462 CTCGGGGTTGTAATTGTGACC 58.919 52.381 0.00 0.00 0.00 4.02
69 70 1.077716 GCTGCCTCGGGGTTGTAAT 60.078 57.895 1.62 0.00 34.45 1.89
71 72 2.925706 TGCTGCCTCGGGGTTGTA 60.926 61.111 1.62 0.00 34.45 2.41
86 87 4.461081 TGTGAATGTAGGGTATTTTGGTGC 59.539 41.667 0.00 0.00 0.00 5.01
94 95 9.541884 AAGGTTTAAAATGTGAATGTAGGGTAT 57.458 29.630 0.00 0.00 0.00 2.73
119 120 9.905713 ATTCAGAGTAATTTTGGTGATAGCTAA 57.094 29.630 0.00 0.00 0.00 3.09
135 136 6.223852 GGTTCAGAGTGTGAATTCAGAGTAA 58.776 40.000 12.58 2.01 46.99 2.24
151 152 0.827368 GAGGTGGCTAGGGTTCAGAG 59.173 60.000 0.00 0.00 0.00 3.35
165 166 5.411361 TCATAAACGTGAGATTTTGGAGGTG 59.589 40.000 0.00 0.00 0.00 4.00
180 181 2.026262 AGCTTGGTGGGATCATAAACGT 60.026 45.455 0.00 0.00 0.00 3.99
189 190 2.681976 CGATCTCAAAGCTTGGTGGGAT 60.682 50.000 12.41 12.41 0.00 3.85
277 278 7.773690 TGGCTAGGTTTACATAGGATTCTTTTC 59.226 37.037 4.03 0.00 31.47 2.29
334 338 4.803613 GGTTGTGATGTGGACAAGAAAAAC 59.196 41.667 0.00 0.00 34.02 2.43
335 339 4.142049 GGGTTGTGATGTGGACAAGAAAAA 60.142 41.667 0.00 0.00 34.02 1.94
336 340 3.383185 GGGTTGTGATGTGGACAAGAAAA 59.617 43.478 0.00 0.00 34.02 2.29
337 341 2.955660 GGGTTGTGATGTGGACAAGAAA 59.044 45.455 0.00 0.00 34.02 2.52
340 344 1.608590 GTGGGTTGTGATGTGGACAAG 59.391 52.381 0.00 0.00 34.02 3.16
343 347 2.851263 TAGTGGGTTGTGATGTGGAC 57.149 50.000 0.00 0.00 0.00 4.02
359 363 0.323999 GGACCCGGGGCAATTTTAGT 60.324 55.000 32.17 0.00 0.00 2.24
420 424 2.270352 TAGGTGGTTGGCAGAGTTTG 57.730 50.000 0.00 0.00 0.00 2.93
428 432 9.740710 ATATAGAAGAAATATTAGGTGGTTGGC 57.259 33.333 0.00 0.00 0.00 4.52
476 642 7.116233 AGCAAATTTAGTAAAACTTTCCATGCG 59.884 33.333 0.00 0.00 0.00 4.73
494 660 8.956426 TGGACGAGAATAAAAGATAGCAAATTT 58.044 29.630 0.00 0.00 0.00 1.82
504 670 8.560355 TTGAATGAATGGACGAGAATAAAAGA 57.440 30.769 0.00 0.00 0.00 2.52
566 732 5.515886 GGCTGGGGCTATATATGTAAAACCA 60.516 44.000 0.00 0.00 38.73 3.67
586 752 5.957842 TTAGAGTATTTTGTTGGTGGCTG 57.042 39.130 0.00 0.00 0.00 4.85
598 764 9.833917 GGGCTTAAGTGTAGAATTAGAGTATTT 57.166 33.333 4.02 0.00 0.00 1.40
625 791 2.224818 ACAAAATGTTAGGTGGCGGGTA 60.225 45.455 0.00 0.00 0.00 3.69
655 822 8.881262 GGGGTATATGCTATAAATGCCTAGTAT 58.119 37.037 0.00 0.00 0.00 2.12
658 825 6.041637 TCGGGGTATATGCTATAAATGCCTAG 59.958 42.308 0.00 0.00 0.00 3.02
659 826 5.900699 TCGGGGTATATGCTATAAATGCCTA 59.099 40.000 0.00 0.00 0.00 3.93
743 913 2.438434 CCTCCGGGGTTGTGATGC 60.438 66.667 0.00 0.00 0.00 3.91
756 926 1.100510 GGTAATTTTGGCGGTCCTCC 58.899 55.000 0.00 0.00 0.00 4.30
786 1013 2.620627 GCTGGTGGCTAGGGTTGTAAAT 60.621 50.000 0.00 0.00 38.06 1.40
827 1642 2.803956 TGTGTGTGTTGGGGTGTTAAA 58.196 42.857 0.00 0.00 0.00 1.52
829 1644 2.509166 TTGTGTGTGTTGGGGTGTTA 57.491 45.000 0.00 0.00 0.00 2.41
831 1646 2.738587 TATTGTGTGTGTTGGGGTGT 57.261 45.000 0.00 0.00 0.00 4.16
839 1654 5.676079 GCGAATAAGGCAATATTGTGTGTGT 60.676 40.000 16.61 0.00 0.00 3.72
841 1656 4.640201 AGCGAATAAGGCAATATTGTGTGT 59.360 37.500 16.61 3.35 0.00 3.72
874 1689 9.204570 GCTATAAATAGCGAATAAGGAACTTCA 57.795 33.333 6.24 0.00 45.75 3.02
892 1707 9.367444 GGTACGCTATAAATGTCTGCTATAAAT 57.633 33.333 0.00 0.00 0.00 1.40
893 1708 8.582437 AGGTACGCTATAAATGTCTGCTATAAA 58.418 33.333 0.00 0.00 0.00 1.40
894 1709 8.027189 CAGGTACGCTATAAATGTCTGCTATAA 58.973 37.037 0.00 0.00 0.00 0.98
916 1731 3.418047 CACGGGTAAATCTTTTCCAGGT 58.582 45.455 4.17 0.00 29.64 4.00
969 1784 0.879090 CGCTTTAGGTTGTGGGTTCC 59.121 55.000 0.00 0.00 0.00 3.62
978 1793 0.677288 GGTTTTGCCCGCTTTAGGTT 59.323 50.000 0.00 0.00 0.00 3.50
1392 2233 4.699522 AACAGCGAAGGCGACCCC 62.700 66.667 0.00 0.00 46.35 4.95
1393 2234 3.423154 CAACAGCGAAGGCGACCC 61.423 66.667 0.00 0.00 46.35 4.46
1490 2331 3.550842 GCGAAGGCAAAAACAGTGATTCT 60.551 43.478 0.00 0.00 39.62 2.40
1499 2340 5.739161 CAGTGATAATAGCGAAGGCAAAAAC 59.261 40.000 0.00 0.00 43.41 2.43
1500 2341 5.414454 ACAGTGATAATAGCGAAGGCAAAAA 59.586 36.000 0.00 0.00 43.41 1.94
1505 2346 4.811557 AGAAACAGTGATAATAGCGAAGGC 59.188 41.667 0.00 0.00 40.37 4.35
1506 2347 5.812642 ACAGAAACAGTGATAATAGCGAAGG 59.187 40.000 0.00 0.00 0.00 3.46
1508 2349 7.491372 CCTAACAGAAACAGTGATAATAGCGAA 59.509 37.037 0.00 0.00 0.00 4.70
1510 2351 6.757010 ACCTAACAGAAACAGTGATAATAGCG 59.243 38.462 0.00 0.00 0.00 4.26
1511 2352 9.250624 CTACCTAACAGAAACAGTGATAATAGC 57.749 37.037 0.00 0.00 0.00 2.97
1512 2353 9.751542 CCTACCTAACAGAAACAGTGATAATAG 57.248 37.037 0.00 0.00 0.00 1.73
1513 2354 9.483489 TCCTACCTAACAGAAACAGTGATAATA 57.517 33.333 0.00 0.00 0.00 0.98
1514 2355 8.375493 TCCTACCTAACAGAAACAGTGATAAT 57.625 34.615 0.00 0.00 0.00 1.28
1515 2356 7.453752 ACTCCTACCTAACAGAAACAGTGATAA 59.546 37.037 0.00 0.00 0.00 1.75
1516 2357 6.952358 ACTCCTACCTAACAGAAACAGTGATA 59.048 38.462 0.00 0.00 0.00 2.15
1517 2358 5.780793 ACTCCTACCTAACAGAAACAGTGAT 59.219 40.000 0.00 0.00 0.00 3.06
1518 2359 5.010719 CACTCCTACCTAACAGAAACAGTGA 59.989 44.000 0.00 0.00 31.13 3.41
1519 2360 5.230942 CACTCCTACCTAACAGAAACAGTG 58.769 45.833 0.00 0.00 0.00 3.66
1520 2361 4.283722 CCACTCCTACCTAACAGAAACAGT 59.716 45.833 0.00 0.00 0.00 3.55
1521 2362 4.283722 ACCACTCCTACCTAACAGAAACAG 59.716 45.833 0.00 0.00 0.00 3.16
1522 2363 4.228824 ACCACTCCTACCTAACAGAAACA 58.771 43.478 0.00 0.00 0.00 2.83
1523 2364 4.282703 TGACCACTCCTACCTAACAGAAAC 59.717 45.833 0.00 0.00 0.00 2.78
1524 2365 4.282703 GTGACCACTCCTACCTAACAGAAA 59.717 45.833 0.00 0.00 0.00 2.52
1525 2366 3.830755 GTGACCACTCCTACCTAACAGAA 59.169 47.826 0.00 0.00 0.00 3.02
1526 2367 3.181426 TGTGACCACTCCTACCTAACAGA 60.181 47.826 1.62 0.00 0.00 3.41
1527 2368 3.162666 TGTGACCACTCCTACCTAACAG 58.837 50.000 1.62 0.00 0.00 3.16
1528 2369 3.247948 TGTGACCACTCCTACCTAACA 57.752 47.619 1.62 0.00 0.00 2.41
1529 2370 3.056035 CCTTGTGACCACTCCTACCTAAC 60.056 52.174 1.62 0.00 0.00 2.34
1530 2371 3.170717 CCTTGTGACCACTCCTACCTAA 58.829 50.000 1.62 0.00 0.00 2.69
1531 2372 2.559026 CCCTTGTGACCACTCCTACCTA 60.559 54.545 1.62 0.00 0.00 3.08
1532 2373 1.645710 CCTTGTGACCACTCCTACCT 58.354 55.000 1.62 0.00 0.00 3.08
1533 2374 0.613777 CCCTTGTGACCACTCCTACC 59.386 60.000 1.62 0.00 0.00 3.18
1534 2375 0.036294 GCCCTTGTGACCACTCCTAC 60.036 60.000 1.62 0.00 0.00 3.18
1535 2376 1.198759 GGCCCTTGTGACCACTCCTA 61.199 60.000 0.00 0.00 0.00 2.94
1536 2377 2.529744 GGCCCTTGTGACCACTCCT 61.530 63.158 0.00 0.00 0.00 3.69
1537 2378 2.034221 GGCCCTTGTGACCACTCC 59.966 66.667 0.00 0.00 0.00 3.85
1538 2379 2.358737 CGGCCCTTGTGACCACTC 60.359 66.667 0.00 0.00 0.00 3.51
1539 2380 1.779061 ATTCGGCCCTTGTGACCACT 61.779 55.000 0.00 0.00 0.00 4.00
1540 2381 0.893727 AATTCGGCCCTTGTGACCAC 60.894 55.000 0.00 0.00 0.00 4.16
1541 2382 0.693622 TAATTCGGCCCTTGTGACCA 59.306 50.000 0.00 0.00 0.00 4.02
1542 2383 1.092348 GTAATTCGGCCCTTGTGACC 58.908 55.000 0.00 0.00 0.00 4.02
1552 2393 3.569690 CCGCACGGGTAATTCGGC 61.570 66.667 0.00 0.00 33.36 5.54
1638 2484 5.064441 AGCAATCAAAATAGCAACCACTC 57.936 39.130 0.00 0.00 0.00 3.51
1666 2512 8.629986 CAAACGAAACATCAATTGTGAGTATTC 58.370 33.333 5.13 3.91 38.99 1.75
1667 2513 8.134895 ACAAACGAAACATCAATTGTGAGTATT 58.865 29.630 5.13 0.00 38.99 1.89
1688 2534 1.597742 TCTCAGCTTCCTGCACAAAC 58.402 50.000 0.00 0.00 45.94 2.93
1811 2657 2.436964 TACCAACCTTAACCCCTGGA 57.563 50.000 0.00 0.00 0.00 3.86
1814 2660 3.466836 TGCTATACCAACCTTAACCCCT 58.533 45.455 0.00 0.00 0.00 4.79
1847 2693 0.818296 CAGAGACCCTGGTAACCTCG 59.182 60.000 0.00 0.00 39.23 4.63
1865 2711 0.846015 CATAAGGGGGATCTGGTGCA 59.154 55.000 0.00 0.00 0.00 4.57
1877 2723 2.863401 TCACATCGTCGTCATAAGGG 57.137 50.000 0.00 0.00 0.00 3.95
1880 2726 3.243401 CCCTCATCACATCGTCGTCATAA 60.243 47.826 0.00 0.00 0.00 1.90
1883 2729 0.455815 CCCTCATCACATCGTCGTCA 59.544 55.000 0.00 0.00 0.00 4.35
1886 2732 0.455815 TCACCCTCATCACATCGTCG 59.544 55.000 0.00 0.00 0.00 5.12
1889 2735 1.753649 AGACTCACCCTCATCACATCG 59.246 52.381 0.00 0.00 0.00 3.84
1914 2760 7.933215 TTTCATCATGACAAGAGTTCATCAT 57.067 32.000 0.00 0.00 31.93 2.45
1927 2773 6.566564 CGCCAGGTACAATATTTCATCATGAC 60.567 42.308 0.00 0.00 0.00 3.06
1939 2785 1.139455 GGTAAGCCGCCAGGTACAATA 59.861 52.381 0.00 0.00 40.50 1.90
1940 2786 0.107361 GGTAAGCCGCCAGGTACAAT 60.107 55.000 0.00 0.00 40.50 2.71
1965 2811 3.947834 CCTGAAGCCACCAAGTAAATAGG 59.052 47.826 0.00 0.00 0.00 2.57
1966 2812 3.947834 CCCTGAAGCCACCAAGTAAATAG 59.052 47.826 0.00 0.00 0.00 1.73
1967 2813 3.332485 ACCCTGAAGCCACCAAGTAAATA 59.668 43.478 0.00 0.00 0.00 1.40
1978 2824 0.465460 GTGAACACACCCTGAAGCCA 60.465 55.000 0.00 0.00 0.00 4.75
2064 2910 1.626686 TGGCGATGGTTTCCAACATT 58.373 45.000 0.00 0.00 36.95 2.71
2068 2914 0.178975 ACCTTGGCGATGGTTTCCAA 60.179 50.000 0.01 0.00 36.95 3.53
2247 3117 5.289193 CCACAGAAGAACACAAAACAACATG 59.711 40.000 0.00 0.00 0.00 3.21
2253 3123 3.020984 TCCCCACAGAAGAACACAAAAC 58.979 45.455 0.00 0.00 0.00 2.43
2259 3129 2.912956 AGCTATTCCCCACAGAAGAACA 59.087 45.455 0.00 0.00 0.00 3.18
2260 3130 3.636153 AGCTATTCCCCACAGAAGAAC 57.364 47.619 0.00 0.00 0.00 3.01
2261 3131 3.846588 AGAAGCTATTCCCCACAGAAGAA 59.153 43.478 0.00 0.00 35.94 2.52
2262 3132 3.198635 CAGAAGCTATTCCCCACAGAAGA 59.801 47.826 0.00 0.00 35.94 2.87
2263 3133 3.054802 ACAGAAGCTATTCCCCACAGAAG 60.055 47.826 0.00 0.00 35.94 2.85
2264 3134 2.912956 ACAGAAGCTATTCCCCACAGAA 59.087 45.455 0.00 0.00 35.94 3.02
2265 3135 2.551270 ACAGAAGCTATTCCCCACAGA 58.449 47.619 0.00 0.00 35.94 3.41
2266 3136 4.696479 ATACAGAAGCTATTCCCCACAG 57.304 45.455 0.00 0.00 35.94 3.66
2306 3176 4.593206 TGTCTTCTCACTAGTCCATTTGGT 59.407 41.667 0.00 0.00 36.34 3.67
2348 3218 4.148838 TCCCCATGTTACTTCCAAAAGTG 58.851 43.478 1.17 0.00 45.37 3.16
2449 3319 0.755686 GTGCTGTATCCTCTCCCTGG 59.244 60.000 0.00 0.00 0.00 4.45
2666 3538 1.419381 TCAGTGTTAGGGACAGCACA 58.581 50.000 0.00 0.00 39.39 4.57
2888 3762 6.714356 TGATGGAGTTATCATTGTTTGTGACA 59.286 34.615 0.00 0.00 32.39 3.58
2921 3795 6.293004 ACAAATGGAGAACAAGGAAACAAA 57.707 33.333 0.00 0.00 0.00 2.83
3061 3952 0.321653 GTGACTGCGGAGTTCCCAAT 60.322 55.000 12.08 0.00 30.16 3.16
3062 3953 1.070786 GTGACTGCGGAGTTCCCAA 59.929 57.895 12.08 0.00 30.16 4.12
3063 3954 2.099652 CTGTGACTGCGGAGTTCCCA 62.100 60.000 12.08 7.51 30.16 4.37
3064 3955 1.374758 CTGTGACTGCGGAGTTCCC 60.375 63.158 12.08 2.79 30.16 3.97
3065 3956 2.029844 GCTGTGACTGCGGAGTTCC 61.030 63.158 12.08 5.48 30.16 3.62
3066 3957 1.287730 CTGCTGTGACTGCGGAGTTC 61.288 60.000 17.06 8.58 36.94 3.01
3067 3958 1.301244 CTGCTGTGACTGCGGAGTT 60.301 57.895 17.06 0.00 36.94 3.01
3068 3959 1.539560 ATCTGCTGTGACTGCGGAGT 61.540 55.000 26.03 10.23 44.42 3.85
3069 3960 0.390866 AATCTGCTGTGACTGCGGAG 60.391 55.000 26.03 12.48 44.42 4.63
3070 3961 0.671472 CAATCTGCTGTGACTGCGGA 60.671 55.000 24.75 24.75 45.06 5.54
3071 3962 1.792301 CAATCTGCTGTGACTGCGG 59.208 57.895 16.04 16.04 36.29 5.69
3141 4032 2.093500 GCGCCCATGTCATATATGGAGA 60.093 50.000 12.78 0.00 46.42 3.71
3235 4126 7.450014 TCTTGAAGTGTTGGGCTGAAATAAATA 59.550 33.333 0.00 0.00 0.00 1.40
3351 4242 9.877222 TTACCTTCCTTTCCTTTTTAAGATTCT 57.123 29.630 0.00 0.00 0.00 2.40
3369 4260 2.059541 GTATCGATGCGCTTACCTTCC 58.940 52.381 9.73 0.00 0.00 3.46
3405 4296 9.178758 AGTGAAGATGGTAAGAATTTTATGTCC 57.821 33.333 0.00 0.00 0.00 4.02
3412 4303 7.406104 AGGCTTAGTGAAGATGGTAAGAATTT 58.594 34.615 0.00 0.00 34.25 1.82
3464 4355 3.007290 TGCAAGCCGATAAGATGCTAGAT 59.993 43.478 0.00 0.00 37.86 1.98
3528 4419 3.084786 GCCCTGAAGTAACTCAGCAAAT 58.915 45.455 0.00 0.00 41.36 2.32
3559 4450 4.222114 GCAACAACTTTGCTGTACTCATC 58.778 43.478 1.70 0.00 41.87 2.92
3588 4479 4.633565 CCAGCATCTGAAGAACTTTCTACC 59.366 45.833 0.00 0.00 36.28 3.18
3630 4521 1.002900 ACCGTGTCATTTTCAACAGCG 60.003 47.619 0.00 0.00 0.00 5.18
3848 4741 5.655532 TCCTACCACTACAAGTAACCAGATC 59.344 44.000 0.00 0.00 0.00 2.75
3855 4748 3.716431 CCCCTCCTACCACTACAAGTAA 58.284 50.000 0.00 0.00 0.00 2.24
3903 4801 6.530120 TCTTAAGCAAAACTGACACTGGATA 58.470 36.000 0.00 0.00 0.00 2.59
3928 4826 9.502091 TGATATTTTGAACTAAACTGCAGTACT 57.498 29.630 22.01 13.15 0.00 2.73
3945 4843 7.415989 CCCTTCACAGGACAATCTGATATTTTG 60.416 40.741 0.00 0.00 44.19 2.44
3983 4883 4.068599 GGAGTCAAAAGGGAGACTTGAAG 58.931 47.826 0.00 0.00 44.61 3.02
3993 4893 6.058183 CAGATATAACTGGGAGTCAAAAGGG 58.942 44.000 2.13 0.00 34.64 3.95
4074 4974 9.256477 GAATAACATATCTGAATAACACCGTGA 57.744 33.333 5.28 0.00 0.00 4.35
4130 5030 4.265893 TGACACTAGCAGAAACCAAAACA 58.734 39.130 0.00 0.00 0.00 2.83
4183 5083 8.268850 ACACTTCTACAAAATGTTATAGGCTG 57.731 34.615 0.00 0.00 0.00 4.85
4196 5096 6.682746 TGAGCAAAACAAACACTTCTACAAA 58.317 32.000 0.00 0.00 0.00 2.83
4197 5097 6.260870 TGAGCAAAACAAACACTTCTACAA 57.739 33.333 0.00 0.00 0.00 2.41
4265 5165 2.096268 CGTGGCCGAAATATACTGCATG 60.096 50.000 0.00 0.00 35.63 4.06
4312 5293 7.849804 ACATTTTTGTCAGCTACCTACATAG 57.150 36.000 0.00 0.00 0.00 2.23
4314 5295 8.267894 AGATACATTTTTGTCAGCTACCTACAT 58.732 33.333 0.00 0.00 0.00 2.29
4315 5296 7.620880 AGATACATTTTTGTCAGCTACCTACA 58.379 34.615 0.00 0.00 0.00 2.74
4444 5436 7.456725 TCTCTGACTTTGAAGATTCCTGAAAT 58.543 34.615 0.00 0.00 0.00 2.17
4527 5519 4.999950 CAGTAGGCAGTTCAGATTTCTGTT 59.000 41.667 7.42 0.00 44.12 3.16
4528 5520 4.284490 TCAGTAGGCAGTTCAGATTTCTGT 59.716 41.667 7.42 0.00 44.12 3.41
4555 5547 6.542005 TGTCATCAGAAACTGCTGTTTTCTTA 59.458 34.615 20.83 11.97 45.36 2.10
4559 5551 5.450965 CCTTGTCATCAGAAACTGCTGTTTT 60.451 40.000 20.83 9.75 45.36 2.43
4561 5553 3.567164 CCTTGTCATCAGAAACTGCTGTT 59.433 43.478 2.72 2.72 37.20 3.16
4604 5596 2.863137 CAGATAGCTTTTCGGTCTCTGC 59.137 50.000 0.00 0.00 37.47 4.26
4610 5602 2.301870 TGACACCAGATAGCTTTTCGGT 59.698 45.455 0.00 0.00 0.00 4.69
4612 5604 3.997021 AGTTGACACCAGATAGCTTTTCG 59.003 43.478 0.00 0.00 0.00 3.46
4764 5756 2.867855 TTGCAAGCCTCGACCGTCT 61.868 57.895 0.00 0.00 0.00 4.18
4771 5763 0.662619 TCACTTTGTTGCAAGCCTCG 59.337 50.000 0.00 0.00 0.00 4.63
4788 5780 3.195610 AGGCTTTGACGTATCATCTGTCA 59.804 43.478 0.00 0.00 40.62 3.58
4789 5781 3.786635 AGGCTTTGACGTATCATCTGTC 58.213 45.455 0.00 0.00 33.85 3.51
4791 5783 4.052159 AGAGGCTTTGACGTATCATCTG 57.948 45.455 0.00 0.00 33.85 2.90
4792 5784 4.160439 TCAAGAGGCTTTGACGTATCATCT 59.840 41.667 7.67 0.00 33.85 2.90
4801 5793 4.870991 GGTGTACTATCAAGAGGCTTTGAC 59.129 45.833 12.24 3.95 39.68 3.18
4828 5820 1.814394 GCAGGCTTTGATGTGTCATCA 59.186 47.619 8.14 8.14 33.56 3.07
4884 5876 2.185310 CTTTACTGCAGGAGGCCGGT 62.185 60.000 19.93 0.00 43.89 5.28
4987 5979 0.035458 CGGGTCTTCTTGCAGGTCTT 59.965 55.000 0.00 0.00 0.00 3.01
5087 6079 2.672414 AGGGAGTGTCCTCTTTCCG 58.328 57.895 0.00 0.00 37.86 4.30
5103 6095 2.489722 TCATCAGTGTCTTCGTCAGAGG 59.510 50.000 0.00 0.00 29.34 3.69
5110 6102 4.991472 TGAGATCTTCATCAGTGTCTTCG 58.009 43.478 0.00 0.00 0.00 3.79
5134 6126 6.977213 TGGTAGCAAGAAAATTACCTTCAAC 58.023 36.000 0.00 0.00 37.15 3.18
5224 6216 8.313292 TGAAACATAAATAGGCAAAGCAGAAAT 58.687 29.630 0.00 0.00 0.00 2.17
5475 6477 9.578576 TCAAAATATCAGCTGCCTATTAAAGAT 57.421 29.630 9.47 0.00 0.00 2.40
5476 6478 8.978874 TCAAAATATCAGCTGCCTATTAAAGA 57.021 30.769 9.47 10.10 0.00 2.52
5477 6479 7.806960 GCTCAAAATATCAGCTGCCTATTAAAG 59.193 37.037 9.47 12.42 0.00 1.85
5478 6480 7.285172 TGCTCAAAATATCAGCTGCCTATTAAA 59.715 33.333 9.47 3.95 34.03 1.52
5479 6481 6.772233 TGCTCAAAATATCAGCTGCCTATTAA 59.228 34.615 9.47 4.25 34.03 1.40
5480 6482 6.298361 TGCTCAAAATATCAGCTGCCTATTA 58.702 36.000 9.47 0.00 34.03 0.98
5481 6483 5.135383 TGCTCAAAATATCAGCTGCCTATT 58.865 37.500 9.47 11.66 34.03 1.73
5482 6484 4.722220 TGCTCAAAATATCAGCTGCCTAT 58.278 39.130 9.47 5.83 34.03 2.57
5483 6485 4.155063 TGCTCAAAATATCAGCTGCCTA 57.845 40.909 9.47 3.42 34.03 3.93
5484 6486 3.008835 TGCTCAAAATATCAGCTGCCT 57.991 42.857 9.47 0.84 34.03 4.75
5555 6557 4.407621 TGATTTAGGAGACGCCATTTCCTA 59.592 41.667 0.00 0.00 41.46 2.94
5580 6582 0.237498 GCTTTTTCCCGTCTTGGTCG 59.763 55.000 0.00 0.00 35.15 4.79
5683 6685 2.766736 ACATTATGGGAAGACGGGGTA 58.233 47.619 0.00 0.00 0.00 3.69
5684 6686 1.591768 ACATTATGGGAAGACGGGGT 58.408 50.000 0.00 0.00 0.00 4.95
5685 6687 3.389983 TCTTACATTATGGGAAGACGGGG 59.610 47.826 7.45 0.00 0.00 5.73
5686 6688 4.141801 TGTCTTACATTATGGGAAGACGGG 60.142 45.833 24.13 0.95 42.47 5.28
5687 6689 5.018539 TGTCTTACATTATGGGAAGACGG 57.981 43.478 24.13 1.21 42.47 4.79
5735 6737 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
5736 6738 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
5737 6739 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
5738 6740 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
5739 6741 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
5741 6743 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
5742 6744 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
5743 6745 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
5744 6746 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
5745 6747 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
5746 6748 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
5747 6749 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
5748 6750 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
5749 6751 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
5750 6752 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
5751 6753 0.635009 TTCTACTCCCTCCGTCCCAT 59.365 55.000 0.00 0.00 0.00 4.00
5752 6754 0.635009 ATTCTACTCCCTCCGTCCCA 59.365 55.000 0.00 0.00 0.00 4.37
5753 6755 2.158490 AGTATTCTACTCCCTCCGTCCC 60.158 54.545 0.00 0.00 32.47 4.46
5754 6756 3.226682 AGTATTCTACTCCCTCCGTCC 57.773 52.381 0.00 0.00 32.47 4.79
5755 6757 4.756135 CACTAGTATTCTACTCCCTCCGTC 59.244 50.000 0.00 0.00 40.14 4.79
5756 6758 4.411540 TCACTAGTATTCTACTCCCTCCGT 59.588 45.833 0.00 0.00 40.14 4.69
5757 6759 4.970711 TCACTAGTATTCTACTCCCTCCG 58.029 47.826 0.00 0.00 40.14 4.63
5758 6760 5.712917 CCATCACTAGTATTCTACTCCCTCC 59.287 48.000 0.00 0.00 40.14 4.30
5759 6761 6.207810 CACCATCACTAGTATTCTACTCCCTC 59.792 46.154 0.00 0.00 40.14 4.30
5760 6762 6.071984 CACCATCACTAGTATTCTACTCCCT 58.928 44.000 0.00 0.00 40.14 4.20
5761 6763 6.069331 TCACCATCACTAGTATTCTACTCCC 58.931 44.000 0.00 0.00 40.14 4.30
5762 6764 7.584122 TTCACCATCACTAGTATTCTACTCC 57.416 40.000 0.00 0.00 40.14 3.85
5764 6766 9.869667 ACTATTCACCATCACTAGTATTCTACT 57.130 33.333 0.00 0.00 42.68 2.57
5789 6791 8.619546 CAGAAAAAGGGAATCAGATCATAAGAC 58.380 37.037 0.00 0.00 0.00 3.01
5790 6792 8.331740 ACAGAAAAAGGGAATCAGATCATAAGA 58.668 33.333 0.00 0.00 0.00 2.10
5791 6793 8.517062 ACAGAAAAAGGGAATCAGATCATAAG 57.483 34.615 0.00 0.00 0.00 1.73
5866 6868 2.634453 AGGCTCCCATCAAAAACTTTGG 59.366 45.455 0.00 0.00 0.00 3.28
5939 6941 6.127196 ACCAAGGAAACATGTAACATTGTTGT 60.127 34.615 19.98 13.00 36.26 3.32
6081 7085 7.500720 TGAGGAAATGACATAACTATGCATG 57.499 36.000 10.16 1.82 37.19 4.06
6082 7086 7.557358 TGTTGAGGAAATGACATAACTATGCAT 59.443 33.333 3.79 3.79 37.19 3.96
6105 7109 6.769134 AACAACTGGCTAACTTAACTTGTT 57.231 33.333 0.00 0.00 0.00 2.83
6107 7111 5.977129 CCAAACAACTGGCTAACTTAACTTG 59.023 40.000 0.00 0.00 0.00 3.16
6108 7112 5.655090 ACCAAACAACTGGCTAACTTAACTT 59.345 36.000 0.00 0.00 40.45 2.66
6268 7272 5.738619 TCTTGTTAGTAGCTCATGGACAA 57.261 39.130 0.00 0.00 0.00 3.18
6294 7298 7.119846 CCAGAAGTAACATAACAGAAAGGGAAG 59.880 40.741 0.00 0.00 0.00 3.46
6305 7309 5.648092 ACCTGAATGCCAGAAGTAACATAAC 59.352 40.000 0.00 0.00 45.78 1.89
6317 7321 3.346315 TCATACACAACCTGAATGCCAG 58.654 45.455 0.00 0.00 42.55 4.85
6362 7366 7.944554 TGAACTCCCATCTTTCATTCTTAAGTT 59.055 33.333 1.63 0.00 0.00 2.66
6420 7424 4.550076 AGAGGATAATAGCAGCATCACC 57.450 45.455 0.00 0.00 0.00 4.02
6439 7443 7.468631 GCAGACAAATTAGACAGGAACAAAAGA 60.469 37.037 0.00 0.00 0.00 2.52
6445 7449 6.258947 GGATAGCAGACAAATTAGACAGGAAC 59.741 42.308 0.00 0.00 0.00 3.62
6510 7517 7.441157 GGTGCAGAGTACAATATTATGCTTACA 59.559 37.037 0.00 0.00 33.47 2.41
6581 7588 8.519526 TGAATGGACCATACATACAAAGTTTTC 58.480 33.333 7.59 0.00 0.00 2.29
6594 7601 7.161404 TGCAGTTCTATATGAATGGACCATAC 58.839 38.462 7.59 0.00 36.99 2.39
6596 7603 6.191657 TGCAGTTCTATATGAATGGACCAT 57.808 37.500 0.00 0.00 36.99 3.55
6763 7770 2.320587 GCCGTCCAGACAAGCACAG 61.321 63.158 5.24 0.00 32.41 3.66
6842 7849 9.832445 TTAGTACAAACCAGGAAATCATAGATC 57.168 33.333 0.00 0.00 0.00 2.75
6993 8002 2.154462 CACCTTCGATTTGGCTGAAGT 58.846 47.619 0.00 0.00 37.90 3.01
7065 8074 2.643232 CCTTGCTGCTTCCCTTGCC 61.643 63.158 0.00 0.00 0.00 4.52
7069 8078 0.255318 CTCATCCTTGCTGCTTCCCT 59.745 55.000 0.00 0.00 0.00 4.20
7241 8250 2.035442 GCGCTTCTTCCCTGTGGAC 61.035 63.158 0.00 0.00 41.57 4.02
7507 8526 5.772169 CCTCCCTTCAAGACTTTCTTCATTT 59.228 40.000 0.00 0.00 33.78 2.32
7584 8611 4.639135 AAGAGACAACTTGAACCAAAGC 57.361 40.909 0.00 0.00 0.00 3.51
7585 8612 6.856895 AGAAAAGAGACAACTTGAACCAAAG 58.143 36.000 0.00 0.00 0.00 2.77
7586 8613 6.127730 GGAGAAAAGAGACAACTTGAACCAAA 60.128 38.462 0.00 0.00 0.00 3.28
7587 8614 5.357032 GGAGAAAAGAGACAACTTGAACCAA 59.643 40.000 0.00 0.00 0.00 3.67
7588 8615 4.881850 GGAGAAAAGAGACAACTTGAACCA 59.118 41.667 0.00 0.00 0.00 3.67
7589 8616 4.881850 TGGAGAAAAGAGACAACTTGAACC 59.118 41.667 0.00 0.00 0.00 3.62
7590 8617 5.502544 CGTGGAGAAAAGAGACAACTTGAAC 60.503 44.000 0.00 0.00 0.00 3.18
7591 8618 4.570772 CGTGGAGAAAAGAGACAACTTGAA 59.429 41.667 0.00 0.00 0.00 2.69
7592 8619 4.119862 CGTGGAGAAAAGAGACAACTTGA 58.880 43.478 0.00 0.00 0.00 3.02
7617 8644 3.303938 TGAAGGGAGCAAAATTTCACCA 58.696 40.909 0.00 0.00 0.00 4.17
7657 8684 4.586235 AGCACTGCTTTGGGCCGT 62.586 61.111 0.00 0.00 38.90 5.68
7711 8763 7.624360 TCTATAAAAGGCGATCAACAACAAT 57.376 32.000 0.00 0.00 0.00 2.71
7763 8815 4.865776 GACAAAATTCGTGTCCATTTGGA 58.134 39.130 9.94 0.00 43.08 3.53
7808 8861 0.968901 ATGTCCACTAGGCGAACGGA 60.969 55.000 0.00 0.00 33.74 4.69
7821 8874 2.662596 GTGTCCGCCTCATGTCCA 59.337 61.111 0.00 0.00 0.00 4.02
7902 8955 0.179084 CGGCGCAAGGAGGAAATCTA 60.179 55.000 10.83 0.00 38.28 1.98
7941 8994 0.690744 TATGCTCCCAGTGCAGGCTA 60.691 55.000 0.00 0.00 44.04 3.93
8014 9067 4.077184 CGCGTGGAAGCAGGGGTA 62.077 66.667 0.00 0.00 36.85 3.69
8052 9105 1.829222 GGACCTCTACACCGAATCCAA 59.171 52.381 0.00 0.00 0.00 3.53
8058 9111 1.000019 CCAGGGACCTCTACACCGA 60.000 63.158 0.00 0.00 0.00 4.69
8149 9231 4.499116 CCCCTCCTCCCGGTCCAT 62.499 72.222 0.00 0.00 0.00 3.41
8169 9251 1.146263 CGCCTTCCTCCGCCTAAAT 59.854 57.895 0.00 0.00 0.00 1.40
8188 9452 1.462670 CGCTTGCTTCTTCTTCCTCAC 59.537 52.381 0.00 0.00 0.00 3.51
8293 9606 4.379243 CAACTCCCTGTCGGCGCT 62.379 66.667 7.64 0.00 0.00 5.92
8413 9759 0.324285 CTCTTGTCTGCTGCTTCCCT 59.676 55.000 0.00 0.00 0.00 4.20
8414 9760 1.304509 GCTCTTGTCTGCTGCTTCCC 61.305 60.000 0.00 0.00 0.00 3.97
8418 9764 2.047465 CCGCTCTTGTCTGCTGCT 60.047 61.111 0.00 0.00 0.00 4.24
8428 9774 3.041627 GCTCTCGTCGTCCGCTCTT 62.042 63.158 0.00 0.00 36.19 2.85
8468 9814 0.689623 AAAAATGGGCCGCAAATGGA 59.310 45.000 0.00 0.00 0.00 3.41
8476 9822 3.866883 ACTGAATGTAAAAATGGGCCG 57.133 42.857 0.00 0.00 0.00 6.13
8488 9834 0.768622 TCCCGACCCAAACTGAATGT 59.231 50.000 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.