Multiple sequence alignment - TraesCS2B01G374000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G374000 chr2B 100.000 4533 0 0 1 4533 533470893 533475425 0 8371
1 TraesCS2B01G374000 chr3B 95.882 4541 165 17 1 4533 440251255 440246729 0 7330
2 TraesCS2B01G374000 chr5A 95.702 4490 157 26 1 4475 502103648 502099180 0 7190
3 TraesCS2B01G374000 chr5A 95.895 4336 157 17 1 4327 211479243 211483566 0 7001
4 TraesCS2B01G374000 chr5A 94.546 4547 221 20 1 4533 316934074 316938607 0 6998
5 TraesCS2B01G374000 chr5A 93.938 4520 245 20 1 4510 102873963 102869463 0 6802
6 TraesCS2B01G374000 chr6A 94.894 4544 207 22 1 4533 420970592 420966063 0 7083
7 TraesCS2B01G374000 chr1A 96.773 4214 111 18 1 4206 576125723 576121527 0 7005
8 TraesCS2B01G374000 chr1B 95.386 4400 174 22 1 4390 135945171 135949551 0 6974
9 TraesCS2B01G374000 chr1B 94.493 4485 221 20 1 4475 590050776 590055244 0 6905
10 TraesCS2B01G374000 chr2A 88.415 656 64 10 3884 4533 501891114 501890465 0 780


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G374000 chr2B 533470893 533475425 4532 False 8371 8371 100.000 1 4533 1 chr2B.!!$F1 4532
1 TraesCS2B01G374000 chr3B 440246729 440251255 4526 True 7330 7330 95.882 1 4533 1 chr3B.!!$R1 4532
2 TraesCS2B01G374000 chr5A 502099180 502103648 4468 True 7190 7190 95.702 1 4475 1 chr5A.!!$R2 4474
3 TraesCS2B01G374000 chr5A 211479243 211483566 4323 False 7001 7001 95.895 1 4327 1 chr5A.!!$F1 4326
4 TraesCS2B01G374000 chr5A 316934074 316938607 4533 False 6998 6998 94.546 1 4533 1 chr5A.!!$F2 4532
5 TraesCS2B01G374000 chr5A 102869463 102873963 4500 True 6802 6802 93.938 1 4510 1 chr5A.!!$R1 4509
6 TraesCS2B01G374000 chr6A 420966063 420970592 4529 True 7083 7083 94.894 1 4533 1 chr6A.!!$R1 4532
7 TraesCS2B01G374000 chr1A 576121527 576125723 4196 True 7005 7005 96.773 1 4206 1 chr1A.!!$R1 4205
8 TraesCS2B01G374000 chr1B 135945171 135949551 4380 False 6974 6974 95.386 1 4390 1 chr1B.!!$F1 4389
9 TraesCS2B01G374000 chr1B 590050776 590055244 4468 False 6905 6905 94.493 1 4475 1 chr1B.!!$F2 4474
10 TraesCS2B01G374000 chr2A 501890465 501891114 649 True 780 780 88.415 3884 4533 1 chr2A.!!$R1 649

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
182 183 0.112412 ATCGTGGGTTTTCCTTGCCT 59.888 50.0 0.0 0.0 40.46 4.75 F
1086 1087 0.032217 AGAGCCAGGAAGAGGAGGAG 60.032 60.0 0.0 0.0 0.00 3.69 F
2312 2317 0.674895 GCATCTCGCACACTTCCCTT 60.675 55.0 0.0 0.0 41.79 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1706 1711 0.116342 TCCTGAGGCACCTTACTGGA 59.884 55.0 0.00 0.0 39.71 3.86 R
2697 2705 0.420272 TGGGCCTCCCTTACCTTACT 59.580 55.0 4.53 0.0 45.70 2.24 R
3872 3958 0.250295 TGCAAGCACTCGCCTAAGTT 60.250 50.0 0.00 0.0 39.83 2.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 183 0.112412 ATCGTGGGTTTTCCTTGCCT 59.888 50.000 0.00 0.00 40.46 4.75
302 303 1.228552 TGAGGGTTTCTTGGGCTGC 60.229 57.895 0.00 0.00 0.00 5.25
365 366 0.605589 CTCAGACCGTGAAGAAGGCT 59.394 55.000 0.00 0.00 33.60 4.58
1086 1087 0.032217 AGAGCCAGGAAGAGGAGGAG 60.032 60.000 0.00 0.00 0.00 3.69
1092 1093 1.022903 AGGAAGAGGAGGAGTGGGAT 58.977 55.000 0.00 0.00 0.00 3.85
1415 1419 6.318648 TCAGGGTAATTGTGTTGCTCATATTC 59.681 38.462 0.00 0.00 0.00 1.75
1456 1461 3.057547 CTCTGGTCGACGCTGAGGG 62.058 68.421 22.03 9.39 0.00 4.30
1477 1482 3.194968 GGTAGTCGACTGATCCTTTGGAA 59.805 47.826 28.12 0.00 34.34 3.53
1706 1711 1.596895 GAGGAGTCGGAAAGCGTCCT 61.597 60.000 7.74 0.00 45.36 3.85
2015 2020 4.769688 TGTTCTGTTGGATATGCTACCAG 58.230 43.478 6.37 4.63 37.48 4.00
2185 2190 3.675698 GTCAATCTTTCTGTCAGTCGACC 59.324 47.826 13.01 0.00 41.85 4.79
2233 2238 2.359107 CACGCTGAGTGCACCCAT 60.359 61.111 14.63 0.00 44.72 4.00
2310 2315 3.490890 GCATCTCGCACACTTCCC 58.509 61.111 0.00 0.00 41.79 3.97
2311 2316 1.078848 GCATCTCGCACACTTCCCT 60.079 57.895 0.00 0.00 41.79 4.20
2312 2317 0.674895 GCATCTCGCACACTTCCCTT 60.675 55.000 0.00 0.00 41.79 3.95
2313 2318 1.363744 CATCTCGCACACTTCCCTTC 58.636 55.000 0.00 0.00 0.00 3.46
2644 2652 2.618045 GGTATGTTTGGTGAGACCCTGG 60.618 54.545 0.00 0.00 37.50 4.45
2697 2705 2.551032 CTGATCTTGCTGTGACTTGCAA 59.449 45.455 13.66 13.66 45.40 4.08
2996 3005 8.206189 CCTCCATGTTTGGCAAATATTTCTAAT 58.794 33.333 18.09 0.00 43.29 1.73
3280 3289 2.768492 GCTGATGGCCCGCTTGAAG 61.768 63.158 0.00 0.00 34.27 3.02
3596 3606 1.652124 CGAGTGGAATTGTAACCGACG 59.348 52.381 0.00 0.00 0.00 5.12
3672 3682 5.580297 TCAAACTTGAATTTGGCACTTGAAC 59.420 36.000 0.00 0.00 39.57 3.18
3710 3720 4.697300 CAAAATGTCTTTTGCAGGTTCG 57.303 40.909 0.00 0.00 43.33 3.95
3751 3763 2.358003 GAGCGCTTGGACTGCAGT 60.358 61.111 21.88 21.88 0.00 4.40
3758 3770 1.168714 CTTGGACTGCAGTTAAGCCC 58.831 55.000 22.65 17.30 0.00 5.19
3773 3785 2.284699 CCCCCGAGTGAGAGGGTT 60.285 66.667 0.00 0.00 46.17 4.11
3872 3958 5.943349 TCCACTCGGTAGGATTTTGATAA 57.057 39.130 0.00 0.00 0.00 1.75
3890 3976 0.875059 AAACTTAGGCGAGTGCTTGC 59.125 50.000 2.89 2.89 42.25 4.01
3896 3982 4.395583 GCGAGTGCTTGCACTGCC 62.396 66.667 29.60 16.52 39.74 4.85
3900 3986 4.695231 GTGCTTGCACTGCCGCTG 62.695 66.667 17.36 0.00 0.00 5.18
3923 4009 2.266055 CCGAGTGAGAGGGTTGCC 59.734 66.667 0.00 0.00 0.00 4.52
3936 4022 0.035739 GGTTGCCCTTCACTCGGTAA 59.964 55.000 0.00 0.00 0.00 2.85
4274 4734 0.035630 CTTGGACTGCAGCTAAGCCT 60.036 55.000 15.27 0.00 0.00 4.58
4302 4835 2.125106 GGCTGGCTTACCACTCGG 60.125 66.667 0.00 0.00 42.67 4.63
4304 4837 1.610554 GGCTGGCTTACCACTCGGTA 61.611 60.000 0.00 0.00 46.71 4.02
4313 4846 2.781681 ACCACTCGGTAGGAATTTGG 57.218 50.000 0.00 0.00 46.71 3.28
4314 4847 1.982958 ACCACTCGGTAGGAATTTGGT 59.017 47.619 0.00 0.00 46.71 3.67
4315 4848 3.175594 ACCACTCGGTAGGAATTTGGTA 58.824 45.455 0.00 0.00 46.71 3.25
4316 4849 3.583966 ACCACTCGGTAGGAATTTGGTAA 59.416 43.478 0.00 0.00 46.71 2.85
4317 4850 4.041938 ACCACTCGGTAGGAATTTGGTAAA 59.958 41.667 0.00 0.00 46.71 2.01
4318 4851 4.393990 CCACTCGGTAGGAATTTGGTAAAC 59.606 45.833 0.00 0.00 0.00 2.01
4319 4852 5.243207 CACTCGGTAGGAATTTGGTAAACT 58.757 41.667 0.00 0.00 0.00 2.66
4320 4853 5.704053 CACTCGGTAGGAATTTGGTAAACTT 59.296 40.000 0.00 0.00 0.00 2.66
4321 4854 6.875195 CACTCGGTAGGAATTTGGTAAACTTA 59.125 38.462 0.00 0.00 0.00 2.24
4322 4855 7.064253 CACTCGGTAGGAATTTGGTAAACTTAG 59.936 40.741 0.00 0.00 0.00 2.18
4323 4856 6.408869 TCGGTAGGAATTTGGTAAACTTAGG 58.591 40.000 0.00 0.00 0.00 2.69
4324 4857 5.065602 CGGTAGGAATTTGGTAAACTTAGGC 59.934 44.000 0.00 0.00 0.00 3.93
4325 4858 5.065602 GGTAGGAATTTGGTAAACTTAGGCG 59.934 44.000 0.00 0.00 0.00 5.52
4326 4859 4.913784 AGGAATTTGGTAAACTTAGGCGA 58.086 39.130 0.00 0.00 0.00 5.54
4327 4860 5.318630 AGGAATTTGGTAAACTTAGGCGAA 58.681 37.500 0.00 0.00 0.00 4.70
4328 4861 5.771165 AGGAATTTGGTAAACTTAGGCGAAA 59.229 36.000 0.00 0.00 0.00 3.46
4329 4862 5.860182 GGAATTTGGTAAACTTAGGCGAAAC 59.140 40.000 0.00 0.00 0.00 2.78
4330 4863 4.471157 TTTGGTAAACTTAGGCGAAACG 57.529 40.909 0.00 0.00 0.00 3.60
4331 4864 2.415776 TGGTAAACTTAGGCGAAACGG 58.584 47.619 0.00 0.00 0.00 4.44
4332 4865 2.036992 TGGTAAACTTAGGCGAAACGGA 59.963 45.455 0.00 0.00 0.00 4.69
4333 4866 3.264947 GGTAAACTTAGGCGAAACGGAT 58.735 45.455 0.00 0.00 0.00 4.18
4334 4867 3.686241 GGTAAACTTAGGCGAAACGGATT 59.314 43.478 0.00 0.00 0.00 3.01
4335 4868 4.201753 GGTAAACTTAGGCGAAACGGATTC 60.202 45.833 0.00 0.00 34.52 2.52
4344 4877 2.721129 GAAACGGATTCGCAGCTAAG 57.279 50.000 0.00 0.00 40.63 2.18
4345 4878 0.727398 AAACGGATTCGCAGCTAAGC 59.273 50.000 0.00 0.00 40.63 3.09
4346 4879 1.090052 AACGGATTCGCAGCTAAGCC 61.090 55.000 3.83 3.83 40.63 4.35
4347 4880 1.227380 CGGATTCGCAGCTAAGCCT 60.227 57.895 11.82 0.00 30.05 4.58
4348 4881 1.218230 CGGATTCGCAGCTAAGCCTC 61.218 60.000 11.82 0.00 30.05 4.70
4349 4882 0.882484 GGATTCGCAGCTAAGCCTCC 60.882 60.000 6.70 0.00 29.63 4.30
4350 4883 1.218230 GATTCGCAGCTAAGCCTCCG 61.218 60.000 0.00 0.00 0.00 4.63
4351 4884 1.676678 ATTCGCAGCTAAGCCTCCGA 61.677 55.000 0.00 0.00 0.00 4.55
4352 4885 2.279120 CGCAGCTAAGCCTCCGAG 60.279 66.667 0.00 0.00 0.00 4.63
4353 4886 2.896443 GCAGCTAAGCCTCCGAGT 59.104 61.111 0.00 0.00 0.00 4.18
4354 4887 1.520342 GCAGCTAAGCCTCCGAGTG 60.520 63.158 0.00 0.00 0.00 3.51
4355 4888 1.893786 CAGCTAAGCCTCCGAGTGT 59.106 57.895 0.00 0.00 0.00 3.55
4356 4889 0.459237 CAGCTAAGCCTCCGAGTGTG 60.459 60.000 0.00 0.00 0.00 3.82
4357 4890 0.612174 AGCTAAGCCTCCGAGTGTGA 60.612 55.000 0.00 0.00 0.00 3.58
4358 4891 0.179124 GCTAAGCCTCCGAGTGTGAG 60.179 60.000 0.00 0.00 0.00 3.51
4359 4892 1.178276 CTAAGCCTCCGAGTGTGAGT 58.822 55.000 0.00 0.00 0.00 3.41
4360 4893 1.133407 CTAAGCCTCCGAGTGTGAGTC 59.867 57.143 0.00 0.00 0.00 3.36
4361 4894 0.540830 AAGCCTCCGAGTGTGAGTCT 60.541 55.000 0.00 0.00 0.00 3.24
4362 4895 1.214062 GCCTCCGAGTGTGAGTCTG 59.786 63.158 0.00 0.00 0.00 3.51
4363 4896 1.886585 CCTCCGAGTGTGAGTCTGG 59.113 63.158 0.00 0.00 0.00 3.86
4364 4897 1.214062 CTCCGAGTGTGAGTCTGGC 59.786 63.158 0.00 0.00 0.00 4.85
4365 4898 1.228583 TCCGAGTGTGAGTCTGGCT 60.229 57.895 0.00 0.00 0.00 4.75
4366 4899 1.214062 CCGAGTGTGAGTCTGGCTC 59.786 63.158 1.45 1.45 44.36 4.70
4374 4907 1.214062 GAGTCTGGCTCACCACTCG 59.786 63.158 4.02 0.00 42.67 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
182 183 1.885887 CCACGGAAGAAAATGCTTGGA 59.114 47.619 0.00 0.00 32.70 3.53
302 303 4.636435 AAACCCCAGTGCGGTCGG 62.636 66.667 0.00 0.00 31.48 4.79
365 366 2.111384 GTCTTCTCATCACCTGGGCTA 58.889 52.381 0.00 0.00 0.00 3.93
1086 1087 1.442526 CTGCAGCATCCGAATCCCAC 61.443 60.000 0.00 0.00 0.00 4.61
1092 1093 2.377810 ATCCCCTGCAGCATCCGAA 61.378 57.895 8.66 0.00 0.00 4.30
1197 1201 1.671379 AAGCTTCGACCGCCTTTCC 60.671 57.895 0.00 0.00 0.00 3.13
1415 1419 9.868277 AGAGATAAAGTTCACACAGAATAAGAG 57.132 33.333 0.00 0.00 38.76 2.85
1456 1461 4.451629 TTCCAAAGGATCAGTCGACTAC 57.548 45.455 19.57 12.37 0.00 2.73
1564 1569 8.189460 GTCAGTCGACTAAGAATGGTATTAAGT 58.811 37.037 19.57 0.00 39.22 2.24
1706 1711 0.116342 TCCTGAGGCACCTTACTGGA 59.884 55.000 0.00 0.00 39.71 3.86
2185 2190 1.011968 TTGCGAAATCCAGTCGACCG 61.012 55.000 13.01 7.86 41.02 4.79
2644 2652 1.581447 CAAGGGGAAAAGCAGTCGC 59.419 57.895 0.00 0.00 38.99 5.19
2697 2705 0.420272 TGGGCCTCCCTTACCTTACT 59.580 55.000 4.53 0.00 45.70 2.24
2855 2864 1.265365 GTCAAGGCAGCTTTGTCAGTC 59.735 52.381 16.28 1.52 0.00 3.51
3280 3289 1.433879 CACTCGACCAGGGATCGTC 59.566 63.158 0.00 0.00 40.50 4.20
3596 3606 2.917363 GCGTCAAGCCTGTTAAAGTTC 58.083 47.619 0.00 0.00 40.81 3.01
3665 3675 2.489329 CCGAAGGCAATCATGTTCAAGT 59.511 45.455 0.00 0.00 46.14 3.16
3710 3720 1.900498 AGCACAGGCACCTTGCTTC 60.900 57.895 15.99 0.00 44.26 3.86
3751 3763 0.976073 CCTCTCACTCGGGGGCTTAA 60.976 60.000 0.00 0.00 0.00 1.85
3758 3770 2.232298 GAGCAACCCTCTCACTCGGG 62.232 65.000 0.00 0.00 46.26 5.14
3773 3785 2.145397 ATCCTACCGAGTGAAGAGCA 57.855 50.000 0.00 0.00 0.00 4.26
3872 3958 0.250295 TGCAAGCACTCGCCTAAGTT 60.250 50.000 0.00 0.00 39.83 2.66
3900 3986 3.151022 CCTCTCACTCGGGGGCTC 61.151 72.222 0.00 0.00 0.00 4.70
3905 3991 2.266055 GCAACCCTCTCACTCGGG 59.734 66.667 0.00 0.00 46.26 5.14
3918 4004 1.001633 TCTTACCGAGTGAAGGGCAAC 59.998 52.381 0.00 0.00 0.00 4.17
3923 4009 9.379791 AGTTATAAAAATCTTACCGAGTGAAGG 57.620 33.333 0.00 0.00 0.00 3.46
3936 4022 6.018994 CGTGCTCGCCTAAGTTATAAAAATCT 60.019 38.462 0.00 0.00 0.00 2.40
4274 4734 3.706373 GCCAGCCTTCCACTCGGA 61.706 66.667 0.00 0.00 40.60 4.55
4302 4835 5.876460 TCGCCTAAGTTTACCAAATTCCTAC 59.124 40.000 0.00 0.00 0.00 3.18
4303 4836 6.052405 TCGCCTAAGTTTACCAAATTCCTA 57.948 37.500 0.00 0.00 0.00 2.94
4304 4837 4.913784 TCGCCTAAGTTTACCAAATTCCT 58.086 39.130 0.00 0.00 0.00 3.36
4305 4838 5.632244 TTCGCCTAAGTTTACCAAATTCC 57.368 39.130 0.00 0.00 0.00 3.01
4306 4839 5.566395 CGTTTCGCCTAAGTTTACCAAATTC 59.434 40.000 0.00 0.00 0.00 2.17
4307 4840 5.454520 CGTTTCGCCTAAGTTTACCAAATT 58.545 37.500 0.00 0.00 0.00 1.82
4308 4841 4.083164 CCGTTTCGCCTAAGTTTACCAAAT 60.083 41.667 0.00 0.00 0.00 2.32
4309 4842 3.250521 CCGTTTCGCCTAAGTTTACCAAA 59.749 43.478 0.00 0.00 0.00 3.28
4310 4843 2.807392 CCGTTTCGCCTAAGTTTACCAA 59.193 45.455 0.00 0.00 0.00 3.67
4311 4844 2.036992 TCCGTTTCGCCTAAGTTTACCA 59.963 45.455 0.00 0.00 0.00 3.25
4312 4845 2.687370 TCCGTTTCGCCTAAGTTTACC 58.313 47.619 0.00 0.00 0.00 2.85
4313 4846 4.890378 GAATCCGTTTCGCCTAAGTTTAC 58.110 43.478 0.00 0.00 0.00 2.01
4325 4858 1.267582 GCTTAGCTGCGAATCCGTTTC 60.268 52.381 0.00 0.00 38.24 2.78
4326 4859 0.727398 GCTTAGCTGCGAATCCGTTT 59.273 50.000 0.00 0.00 38.24 3.60
4327 4860 1.090052 GGCTTAGCTGCGAATCCGTT 61.090 55.000 3.59 0.00 38.24 4.44
4328 4861 1.521681 GGCTTAGCTGCGAATCCGT 60.522 57.895 3.59 0.00 38.24 4.69
4329 4862 1.218230 GAGGCTTAGCTGCGAATCCG 61.218 60.000 3.59 0.00 39.16 4.18
4330 4863 0.882484 GGAGGCTTAGCTGCGAATCC 60.882 60.000 3.59 7.20 0.00 3.01
4331 4864 1.218230 CGGAGGCTTAGCTGCGAATC 61.218 60.000 3.59 0.00 36.54 2.52
4332 4865 1.227380 CGGAGGCTTAGCTGCGAAT 60.227 57.895 3.59 0.00 36.54 3.34
4333 4866 2.184322 CGGAGGCTTAGCTGCGAA 59.816 61.111 3.59 0.00 36.54 4.70
4334 4867 2.754254 TCGGAGGCTTAGCTGCGA 60.754 61.111 13.63 13.63 40.84 5.10
4335 4868 2.279120 CTCGGAGGCTTAGCTGCG 60.279 66.667 3.59 7.64 35.78 5.18
4336 4869 1.520342 CACTCGGAGGCTTAGCTGC 60.520 63.158 10.23 0.00 0.00 5.25
4337 4870 0.459237 CACACTCGGAGGCTTAGCTG 60.459 60.000 10.23 0.00 0.00 4.24
4338 4871 0.612174 TCACACTCGGAGGCTTAGCT 60.612 55.000 10.23 0.00 0.00 3.32
4339 4872 0.179124 CTCACACTCGGAGGCTTAGC 60.179 60.000 10.23 0.00 0.00 3.09
4340 4873 1.133407 GACTCACACTCGGAGGCTTAG 59.867 57.143 10.23 4.32 37.44 2.18
4341 4874 1.174783 GACTCACACTCGGAGGCTTA 58.825 55.000 10.23 0.00 37.44 3.09
4342 4875 1.968310 GACTCACACTCGGAGGCTT 59.032 57.895 10.23 0.00 37.44 4.35
4343 4876 1.075836 AGACTCACACTCGGAGGCT 59.924 57.895 10.23 0.00 45.90 4.58
4344 4877 1.214062 CAGACTCACACTCGGAGGC 59.786 63.158 10.23 0.00 40.88 4.70
4345 4878 1.886585 CCAGACTCACACTCGGAGG 59.113 63.158 10.23 1.07 36.70 4.30
4346 4879 1.214062 GCCAGACTCACACTCGGAG 59.786 63.158 2.83 2.83 38.36 4.63
4347 4880 1.228583 AGCCAGACTCACACTCGGA 60.229 57.895 0.00 0.00 0.00 4.55
4348 4881 1.214062 GAGCCAGACTCACACTCGG 59.786 63.158 0.00 0.00 45.49 4.63
4349 4882 4.878774 GAGCCAGACTCACACTCG 57.121 61.111 0.00 0.00 45.49 4.18
4368 4901 6.113411 AGTTTATCAAAATCCTACCGAGTGG 58.887 40.000 0.00 0.00 42.84 4.00
4369 4902 7.611213 AAGTTTATCAAAATCCTACCGAGTG 57.389 36.000 0.00 0.00 0.00 3.51
4370 4903 7.985752 CCTAAGTTTATCAAAATCCTACCGAGT 59.014 37.037 0.00 0.00 0.00 4.18
4371 4904 7.041984 GCCTAAGTTTATCAAAATCCTACCGAG 60.042 40.741 0.00 0.00 0.00 4.63
4372 4905 6.764560 GCCTAAGTTTATCAAAATCCTACCGA 59.235 38.462 0.00 0.00 0.00 4.69
4373 4906 6.292703 CGCCTAAGTTTATCAAAATCCTACCG 60.293 42.308 0.00 0.00 0.00 4.02
4374 4907 6.764560 TCGCCTAAGTTTATCAAAATCCTACC 59.235 38.462 0.00 0.00 0.00 3.18
4456 5212 5.720261 GGACTCGCCTAAGTTTATCAAAG 57.280 43.478 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.