Multiple sequence alignment - TraesCS2B01G373600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G373600 chr2B 100.000 7547 0 0 1 7547 532097596 532090050 0.000000e+00 13937.0
1 TraesCS2B01G373600 chr2B 98.551 69 1 0 2106 2174 532095427 532095359 1.030000e-23 122.0
2 TraesCS2B01G373600 chr2B 98.551 69 1 0 2170 2238 532095491 532095423 1.030000e-23 122.0
3 TraesCS2B01G373600 chr2D 96.024 5257 102 26 2170 7344 451975921 451970690 0.000000e+00 8451.0
4 TraesCS2B01G373600 chr2D 94.300 1614 64 9 588 2175 451977462 451975851 0.000000e+00 2446.0
5 TraesCS2B01G373600 chr2D 93.224 428 20 6 145 569 451977869 451977448 8.320000e-174 621.0
6 TraesCS2B01G373600 chr2D 90.909 110 7 3 53 160 384255280 384255172 2.190000e-30 145.0
7 TraesCS2B01G373600 chr2D 94.048 84 5 0 3692 3775 642198794 642198711 2.210000e-25 128.0
8 TraesCS2B01G373600 chr2D 95.312 64 1 1 4 67 451977925 451977864 4.820000e-17 100.0
9 TraesCS2B01G373600 chr2A 94.933 3355 93 27 3768 7072 597501535 597504862 0.000000e+00 5182.0
10 TraesCS2B01G373600 chr2A 92.507 1508 74 15 588 2059 597498349 597499853 0.000000e+00 2122.0
11 TraesCS2B01G373600 chr2A 92.894 957 33 21 2763 3715 597500614 597501539 0.000000e+00 1358.0
12 TraesCS2B01G373600 chr2A 93.957 513 25 4 2170 2679 597500101 597500610 0.000000e+00 771.0
13 TraesCS2B01G373600 chr2A 93.675 332 15 3 145 473 597497901 597498229 6.800000e-135 492.0
14 TraesCS2B01G373600 chr2A 94.262 122 5 2 2055 2174 597500049 597500170 1.290000e-42 185.0
15 TraesCS2B01G373600 chr2A 93.846 65 3 1 1 65 597497841 597497904 6.230000e-16 97.1
16 TraesCS2B01G373600 chr3D 97.101 207 6 0 7341 7547 354090355 354090149 4.330000e-92 350.0
17 TraesCS2B01G373600 chr6A 100.000 87 0 0 62 148 562819477 562819391 2.180000e-35 161.0
18 TraesCS2B01G373600 chr4A 96.907 97 2 1 60 156 553449522 553449427 2.180000e-35 161.0
19 TraesCS2B01G373600 chr6D 95.789 95 3 1 55 149 63731601 63731508 1.310000e-32 152.0
20 TraesCS2B01G373600 chr7B 94.000 100 5 1 62 160 652932535 652932436 4.720000e-32 150.0
21 TraesCS2B01G373600 chr5B 94.000 100 5 1 61 160 496138767 496138669 4.720000e-32 150.0
22 TraesCS2B01G373600 chr1D 94.845 97 3 2 61 157 197821567 197821661 4.720000e-32 150.0
23 TraesCS2B01G373600 chr4D 90.179 112 9 2 47 157 119412798 119412688 2.190000e-30 145.0
24 TraesCS2B01G373600 chr4D 93.407 91 3 3 3694 3782 215459629 215459540 1.710000e-26 132.0
25 TraesCS2B01G373600 chr4B 86.923 130 13 3 18 147 403270654 403270779 7.890000e-30 143.0
26 TraesCS2B01G373600 chr4B 95.238 84 2 2 3694 3776 237272800 237272718 1.710000e-26 132.0
27 TraesCS2B01G373600 chr4B 92.308 91 4 3 3694 3782 237038972 237038883 7.950000e-25 126.0
28 TraesCS2B01G373600 chr7D 96.341 82 3 0 3694 3775 135026247 135026328 1.320000e-27 135.0
29 TraesCS2B01G373600 chr7A 94.118 85 4 1 3691 3775 350571789 350571872 2.210000e-25 128.0
30 TraesCS2B01G373600 chr1A 95.122 82 2 1 3694 3775 225509495 225509574 2.210000e-25 128.0
31 TraesCS2B01G373600 chr1A 92.135 89 5 2 3689 3776 530212687 530212600 2.860000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G373600 chr2B 532090050 532097596 7546 True 4727.000000 13937 99.034000 1 7547 3 chr2B.!!$R1 7546
1 TraesCS2B01G373600 chr2D 451970690 451977925 7235 True 2904.500000 8451 94.715000 4 7344 4 chr2D.!!$R3 7340
2 TraesCS2B01G373600 chr2A 597497841 597504862 7021 False 1458.157143 5182 93.724857 1 7072 7 chr2A.!!$F1 7071


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
640 683 0.107654 GCAGCCGTAAATCCTCCAGT 60.108 55.000 0.00 0.00 0.00 4.00 F
1422 1484 0.519961 GTTTAGGTGCGTGCGGATTT 59.480 50.000 0.00 0.00 0.00 2.17 F
1524 1594 0.392729 AGCTGTCATGGCTGAGCTTC 60.393 55.000 8.55 0.00 38.73 3.86 F
2875 3164 0.254178 ATCAGAGCTGGGTTCGCAAT 59.746 50.000 0.00 0.00 0.00 3.56 F
3325 3614 2.094182 TGAGGCATCAGTCGTTTACTCC 60.094 50.000 0.00 0.00 35.76 3.85 F
4344 4650 0.661020 AGGCTGTTTTTGAACCGACG 59.339 50.000 0.00 0.00 0.00 5.12 F
4362 4668 1.476891 ACGTTCTGTCCGATGTATGCT 59.523 47.619 0.00 0.00 0.00 3.79 F
5655 5994 2.147387 AGTGAACCGGCCAGGAACT 61.147 57.895 18.74 14.77 45.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1524 1594 0.179000 GCCCACCTCATCCTACACAG 59.821 60.000 0.00 0.00 0.00 3.66 R
2350 2639 1.630369 TCCACCTCTGTTTCATGGGAG 59.370 52.381 0.00 0.00 0.00 4.30 R
3446 3735 0.179127 ATGGAGTCGCGTCACATCAG 60.179 55.000 5.77 0.00 0.00 2.90 R
4022 4326 2.136298 TGCCACTTCAACAGGAACAA 57.864 45.000 0.00 0.00 0.00 2.83 R
4657 4963 2.835580 TGTACCGTCGATTTCCCAAA 57.164 45.000 0.00 0.00 0.00 3.28 R
5655 5994 0.030195 TCCCAGGCATCATACCTCCA 60.030 55.000 0.00 0.00 34.42 3.86 R
5772 6111 0.464735 TCAACGGACCCTGGTTGTTG 60.465 55.000 20.57 20.57 43.04 3.33 R
7483 7868 0.035036 GGCGGCCTAGAGGATTAACC 59.965 60.000 12.87 0.00 37.39 2.85 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 43 5.850557 TCAAAGTGAATCTCAAGGCAAAA 57.149 34.783 0.00 0.00 0.00 2.44
42 44 6.219417 TCAAAGTGAATCTCAAGGCAAAAA 57.781 33.333 0.00 0.00 0.00 1.94
45 47 5.192327 AGTGAATCTCAAGGCAAAAACTG 57.808 39.130 0.00 0.00 0.00 3.16
61 63 5.582689 AAAACTGAGTTGCAAAAGTAGCT 57.417 34.783 0.00 0.00 0.00 3.32
62 64 6.693315 AAAACTGAGTTGCAAAAGTAGCTA 57.307 33.333 0.00 0.00 0.00 3.32
63 65 5.674933 AACTGAGTTGCAAAAGTAGCTAC 57.325 39.130 16.43 16.43 37.87 3.58
67 69 3.676093 AGTTGCAAAAGTAGCTACTCCC 58.324 45.455 26.21 14.59 42.81 4.30
68 70 3.328050 AGTTGCAAAAGTAGCTACTCCCT 59.672 43.478 26.21 8.82 42.81 4.20
69 71 3.611766 TGCAAAAGTAGCTACTCCCTC 57.388 47.619 26.21 15.78 34.99 4.30
70 72 2.236395 TGCAAAAGTAGCTACTCCCTCC 59.764 50.000 26.21 13.95 34.99 4.30
71 73 2.738964 GCAAAAGTAGCTACTCCCTCCG 60.739 54.545 26.21 12.70 34.99 4.63
72 74 2.496470 CAAAAGTAGCTACTCCCTCCGT 59.504 50.000 26.21 6.52 34.99 4.69
73 75 3.659183 AAAGTAGCTACTCCCTCCGTA 57.341 47.619 26.21 0.00 34.99 4.02
74 76 3.659183 AAGTAGCTACTCCCTCCGTAA 57.341 47.619 26.21 0.00 34.99 3.18
75 77 3.880168 AGTAGCTACTCCCTCCGTAAT 57.120 47.619 20.95 0.00 0.00 1.89
76 78 3.753815 AGTAGCTACTCCCTCCGTAATC 58.246 50.000 20.95 0.00 0.00 1.75
77 79 3.395273 AGTAGCTACTCCCTCCGTAATCT 59.605 47.826 20.95 0.00 0.00 2.40
78 80 4.596643 AGTAGCTACTCCCTCCGTAATCTA 59.403 45.833 20.95 0.00 0.00 1.98
79 81 4.450305 AGCTACTCCCTCCGTAATCTAA 57.550 45.455 0.00 0.00 0.00 2.10
80 82 5.000570 AGCTACTCCCTCCGTAATCTAAT 57.999 43.478 0.00 0.00 0.00 1.73
81 83 6.137104 AGCTACTCCCTCCGTAATCTAATA 57.863 41.667 0.00 0.00 0.00 0.98
82 84 6.733509 AGCTACTCCCTCCGTAATCTAATAT 58.266 40.000 0.00 0.00 0.00 1.28
83 85 7.870027 AGCTACTCCCTCCGTAATCTAATATA 58.130 38.462 0.00 0.00 0.00 0.86
84 86 8.334734 AGCTACTCCCTCCGTAATCTAATATAA 58.665 37.037 0.00 0.00 0.00 0.98
85 87 8.623030 GCTACTCCCTCCGTAATCTAATATAAG 58.377 40.741 0.00 0.00 0.00 1.73
86 88 9.902684 CTACTCCCTCCGTAATCTAATATAAGA 57.097 37.037 0.00 0.00 0.00 2.10
87 89 8.810990 ACTCCCTCCGTAATCTAATATAAGAG 57.189 38.462 0.00 0.00 0.00 2.85
88 90 7.339976 ACTCCCTCCGTAATCTAATATAAGAGC 59.660 40.741 0.00 0.00 0.00 4.09
89 91 6.318144 TCCCTCCGTAATCTAATATAAGAGCG 59.682 42.308 0.00 0.00 0.00 5.03
90 92 6.095160 CCCTCCGTAATCTAATATAAGAGCGT 59.905 42.308 0.00 0.00 0.00 5.07
91 93 7.362747 CCCTCCGTAATCTAATATAAGAGCGTT 60.363 40.741 0.00 0.00 0.00 4.84
92 94 8.027771 CCTCCGTAATCTAATATAAGAGCGTTT 58.972 37.037 0.00 0.00 0.00 3.60
109 111 9.570488 AAGAGCGTTTAGATTACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
110 112 8.738106 AGAGCGTTTAGATTACTAAAGTAGTGT 58.262 33.333 0.00 0.00 45.42 3.55
111 113 9.351570 GAGCGTTTAGATTACTAAAGTAGTGTT 57.648 33.333 0.00 0.00 45.42 3.32
112 114 9.351570 AGCGTTTAGATTACTAAAGTAGTGTTC 57.648 33.333 0.00 0.00 45.42 3.18
113 115 9.351570 GCGTTTAGATTACTAAAGTAGTGTTCT 57.648 33.333 0.00 3.55 45.42 3.01
119 121 9.351570 AGATTACTAAAGTAGTGTTCTAAACGC 57.648 33.333 0.00 0.00 39.81 4.84
140 142 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
141 143 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
142 144 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
143 145 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
297 300 8.099364 ACGAGACACATATGTTCATTTTCTTT 57.901 30.769 5.37 0.00 39.95 2.52
331 334 8.812147 TTCGTGTATGATCTAATAACATGGTC 57.188 34.615 0.00 0.00 0.00 4.02
352 355 5.692204 GGTCTATTAACCTGACATGTCATCG 59.308 44.000 28.00 21.89 39.13 3.84
427 430 5.632764 CGTTGCATCCAATTTTGTAATGACA 59.367 36.000 0.00 0.00 32.75 3.58
522 564 0.889186 ACCCGTCCAAAGTCACATGC 60.889 55.000 0.00 0.00 0.00 4.06
548 590 0.391130 TGTCCATTACAGCCTGCGAC 60.391 55.000 0.00 0.00 33.01 5.19
572 614 2.320367 CGAGATAGCATCGCACTTACC 58.680 52.381 0.00 0.00 32.81 2.85
573 615 2.287608 CGAGATAGCATCGCACTTACCA 60.288 50.000 0.00 0.00 32.81 3.25
574 616 3.612717 CGAGATAGCATCGCACTTACCAT 60.613 47.826 0.00 0.00 32.81 3.55
575 617 3.657634 AGATAGCATCGCACTTACCATG 58.342 45.455 0.00 0.00 0.00 3.66
576 618 1.581934 TAGCATCGCACTTACCATGC 58.418 50.000 0.00 0.00 41.72 4.06
577 619 0.392863 AGCATCGCACTTACCATGCA 60.393 50.000 5.60 0.00 43.48 3.96
578 620 0.451383 GCATCGCACTTACCATGCAA 59.549 50.000 0.00 0.00 43.57 4.08
579 621 1.135431 GCATCGCACTTACCATGCAAA 60.135 47.619 0.00 0.00 43.57 3.68
580 622 2.670789 GCATCGCACTTACCATGCAAAA 60.671 45.455 0.00 0.00 43.57 2.44
581 623 3.573598 CATCGCACTTACCATGCAAAAA 58.426 40.909 0.00 0.00 43.57 1.94
614 656 4.767255 GCACTCCAGCAGGACCCG 62.767 72.222 0.00 0.00 39.61 5.28
640 683 0.107654 GCAGCCGTAAATCCTCCAGT 60.108 55.000 0.00 0.00 0.00 4.00
656 699 0.895559 CAGTCTCCCCTGCCCAAAAC 60.896 60.000 0.00 0.00 0.00 2.43
665 708 2.081462 CCTGCCCAAAACCGTAACTAG 58.919 52.381 0.00 0.00 0.00 2.57
732 776 3.680786 CGACTCCACGCACCTCCA 61.681 66.667 0.00 0.00 0.00 3.86
748 792 3.133362 ACCTCCACTTGTGAAAGTACGAA 59.867 43.478 1.89 0.00 0.00 3.85
781 825 1.576421 GCAGCAGAAACAACGAGGG 59.424 57.895 0.00 0.00 0.00 4.30
786 830 1.864029 GCAGAAACAACGAGGGTTTGC 60.864 52.381 8.17 4.72 38.50 3.68
883 927 2.861974 GGAACCCAACCCTCCCCA 60.862 66.667 0.00 0.00 0.00 4.96
1284 1338 4.906792 GCTCTAGGCCCTGCGCTG 62.907 72.222 9.73 8.47 37.74 5.18
1422 1484 0.519961 GTTTAGGTGCGTGCGGATTT 59.480 50.000 0.00 0.00 0.00 2.17
1460 1522 8.718102 TCTGTAGGCTACAATTTAGATTTCAC 57.282 34.615 26.12 0.00 38.38 3.18
1497 1567 2.601666 AGGGCTGTGCTCTCGACA 60.602 61.111 0.00 0.00 31.40 4.35
1524 1594 0.392729 AGCTGTCATGGCTGAGCTTC 60.393 55.000 8.55 0.00 38.73 3.86
1587 1657 4.018506 TCAAGCAGATTCCTGGGTTTATCA 60.019 41.667 0.00 0.00 40.72 2.15
1596 1666 3.585289 TCCTGGGTTTATCACTACTTGCA 59.415 43.478 0.00 0.00 0.00 4.08
1603 1673 8.268605 TGGGTTTATCACTACTTGCACATATAA 58.731 33.333 0.00 0.00 0.00 0.98
1610 1680 9.830975 ATCACTACTTGCACATATAACATGTTA 57.169 29.630 20.14 20.14 0.00 2.41
1685 1764 9.294030 CAGATTTTGGCTATGTTCTGATTTAAC 57.706 33.333 0.00 0.00 34.00 2.01
1725 1804 3.572632 ATGCTGACATGGATGCTACTT 57.427 42.857 0.00 0.00 34.35 2.24
1755 1834 3.490439 TTGGTGACTTGCATTCTGAGA 57.510 42.857 0.00 0.00 0.00 3.27
1813 1892 3.813596 CCTGCGCAAGGTACATCC 58.186 61.111 13.05 0.00 41.74 3.51
1817 1896 1.819632 GCGCAAGGTACATCCCTGG 60.820 63.158 0.30 0.00 34.19 4.45
1828 1907 1.003355 ATCCCTGGCACTTCACACG 60.003 57.895 0.00 0.00 0.00 4.49
1952 2031 3.139077 GTGGTTCGACAGGTTTGAGATT 58.861 45.455 0.00 0.00 0.00 2.40
1957 2036 5.642063 GGTTCGACAGGTTTGAGATTTATCA 59.358 40.000 0.00 0.00 0.00 2.15
1959 2038 5.419542 TCGACAGGTTTGAGATTTATCAGG 58.580 41.667 0.00 0.00 0.00 3.86
1979 2058 7.020827 TCAGGGAAGAACTATCAAGTTTGAT 57.979 36.000 11.69 11.69 46.09 2.57
2074 2357 4.572389 CCACTTAGTTCACTGATGTATGCC 59.428 45.833 0.00 0.00 0.00 4.40
2075 2358 5.178061 CACTTAGTTCACTGATGTATGCCA 58.822 41.667 0.00 0.00 0.00 4.92
2081 2364 2.092267 TCACTGATGTATGCCATTGCCT 60.092 45.455 0.00 0.00 36.33 4.75
2083 2366 2.092267 ACTGATGTATGCCATTGCCTGA 60.092 45.455 0.00 0.00 36.33 3.86
2140 2425 4.974368 AGATTGTCAGTAGAAGACTCCG 57.026 45.455 0.00 0.00 35.64 4.63
2141 2426 4.337145 AGATTGTCAGTAGAAGACTCCGT 58.663 43.478 0.00 0.00 35.64 4.69
2142 2427 4.767928 AGATTGTCAGTAGAAGACTCCGTT 59.232 41.667 0.00 0.00 35.64 4.44
2143 2428 4.931661 TTGTCAGTAGAAGACTCCGTTT 57.068 40.909 0.00 0.00 35.64 3.60
2144 2429 4.931661 TGTCAGTAGAAGACTCCGTTTT 57.068 40.909 0.00 0.00 35.64 2.43
2145 2430 4.617959 TGTCAGTAGAAGACTCCGTTTTG 58.382 43.478 0.00 0.00 35.64 2.44
2146 2431 4.098960 TGTCAGTAGAAGACTCCGTTTTGT 59.901 41.667 0.00 0.00 35.64 2.83
2147 2432 5.300034 TGTCAGTAGAAGACTCCGTTTTGTA 59.700 40.000 0.00 0.00 35.64 2.41
2148 2433 6.015688 TGTCAGTAGAAGACTCCGTTTTGTAT 60.016 38.462 0.00 0.00 35.64 2.29
2149 2434 6.308282 GTCAGTAGAAGACTCCGTTTTGTATG 59.692 42.308 0.00 0.00 35.64 2.39
2150 2435 6.015688 TCAGTAGAAGACTCCGTTTTGTATGT 60.016 38.462 0.00 0.00 35.64 2.29
2151 2436 6.645415 CAGTAGAAGACTCCGTTTTGTATGTT 59.355 38.462 0.00 0.00 35.64 2.71
2152 2437 7.170998 CAGTAGAAGACTCCGTTTTGTATGTTT 59.829 37.037 0.00 0.00 35.64 2.83
2153 2438 6.300354 AGAAGACTCCGTTTTGTATGTTTG 57.700 37.500 0.00 0.00 0.00 2.93
2154 2439 6.053005 AGAAGACTCCGTTTTGTATGTTTGA 58.947 36.000 0.00 0.00 0.00 2.69
2155 2440 6.540914 AGAAGACTCCGTTTTGTATGTTTGAA 59.459 34.615 0.00 0.00 0.00 2.69
2156 2441 6.877611 AGACTCCGTTTTGTATGTTTGAAT 57.122 33.333 0.00 0.00 0.00 2.57
2157 2442 6.668323 AGACTCCGTTTTGTATGTTTGAATG 58.332 36.000 0.00 0.00 0.00 2.67
2158 2443 6.262273 AGACTCCGTTTTGTATGTTTGAATGT 59.738 34.615 0.00 0.00 0.00 2.71
2159 2444 6.205784 ACTCCGTTTTGTATGTTTGAATGTG 58.794 36.000 0.00 0.00 0.00 3.21
2160 2445 6.137794 TCCGTTTTGTATGTTTGAATGTGT 57.862 33.333 0.00 0.00 0.00 3.72
2161 2446 5.974158 TCCGTTTTGTATGTTTGAATGTGTG 59.026 36.000 0.00 0.00 0.00 3.82
2162 2447 5.746245 CCGTTTTGTATGTTTGAATGTGTGT 59.254 36.000 0.00 0.00 0.00 3.72
2163 2448 6.291532 CCGTTTTGTATGTTTGAATGTGTGTG 60.292 38.462 0.00 0.00 0.00 3.82
2164 2449 6.410038 GTTTTGTATGTTTGAATGTGTGTGC 58.590 36.000 0.00 0.00 0.00 4.57
2165 2450 5.512753 TTGTATGTTTGAATGTGTGTGCT 57.487 34.783 0.00 0.00 0.00 4.40
2166 2451 4.857799 TGTATGTTTGAATGTGTGTGCTG 58.142 39.130 0.00 0.00 0.00 4.41
2167 2452 2.867287 TGTTTGAATGTGTGTGCTGG 57.133 45.000 0.00 0.00 0.00 4.85
2168 2453 2.098614 TGTTTGAATGTGTGTGCTGGT 58.901 42.857 0.00 0.00 0.00 4.00
2169 2454 3.282885 TGTTTGAATGTGTGTGCTGGTA 58.717 40.909 0.00 0.00 0.00 3.25
2170 2455 3.888323 TGTTTGAATGTGTGTGCTGGTAT 59.112 39.130 0.00 0.00 0.00 2.73
2171 2456 5.066593 TGTTTGAATGTGTGTGCTGGTATA 58.933 37.500 0.00 0.00 0.00 1.47
2172 2457 5.709631 TGTTTGAATGTGTGTGCTGGTATAT 59.290 36.000 0.00 0.00 0.00 0.86
2173 2458 6.208402 TGTTTGAATGTGTGTGCTGGTATATT 59.792 34.615 0.00 0.00 0.00 1.28
2174 2459 5.816449 TGAATGTGTGTGCTGGTATATTG 57.184 39.130 0.00 0.00 0.00 1.90
2175 2460 5.495640 TGAATGTGTGTGCTGGTATATTGA 58.504 37.500 0.00 0.00 0.00 2.57
2176 2461 5.942826 TGAATGTGTGTGCTGGTATATTGAA 59.057 36.000 0.00 0.00 0.00 2.69
2177 2462 6.602803 TGAATGTGTGTGCTGGTATATTGAAT 59.397 34.615 0.00 0.00 0.00 2.57
2178 2463 7.122501 TGAATGTGTGTGCTGGTATATTGAATT 59.877 33.333 0.00 0.00 0.00 2.17
2179 2464 6.193514 TGTGTGTGCTGGTATATTGAATTG 57.806 37.500 0.00 0.00 0.00 2.32
2180 2465 5.709631 TGTGTGTGCTGGTATATTGAATTGT 59.290 36.000 0.00 0.00 0.00 2.71
2181 2466 6.029607 GTGTGTGCTGGTATATTGAATTGTG 58.970 40.000 0.00 0.00 0.00 3.33
2182 2467 5.709631 TGTGTGCTGGTATATTGAATTGTGT 59.290 36.000 0.00 0.00 0.00 3.72
2183 2468 6.881602 TGTGTGCTGGTATATTGAATTGTGTA 59.118 34.615 0.00 0.00 0.00 2.90
2184 2469 7.065683 TGTGTGCTGGTATATTGAATTGTGTAG 59.934 37.037 0.00 0.00 0.00 2.74
2185 2470 7.279981 GTGTGCTGGTATATTGAATTGTGTAGA 59.720 37.037 0.00 0.00 0.00 2.59
2186 2471 7.992608 TGTGCTGGTATATTGAATTGTGTAGAT 59.007 33.333 0.00 0.00 0.00 1.98
2187 2472 8.840321 GTGCTGGTATATTGAATTGTGTAGATT 58.160 33.333 0.00 0.00 0.00 2.40
2188 2473 8.839343 TGCTGGTATATTGAATTGTGTAGATTG 58.161 33.333 0.00 0.00 0.00 2.67
2189 2474 8.840321 GCTGGTATATTGAATTGTGTAGATTGT 58.160 33.333 0.00 0.00 0.00 2.71
2191 2476 9.898152 TGGTATATTGAATTGTGTAGATTGTCA 57.102 29.630 0.00 0.00 0.00 3.58
2197 2482 9.725019 ATTGAATTGTGTAGATTGTCAGTAGAA 57.275 29.630 0.00 0.00 0.00 2.10
2198 2483 8.763049 TGAATTGTGTAGATTGTCAGTAGAAG 57.237 34.615 0.00 0.00 0.00 2.85
2199 2484 8.585018 TGAATTGTGTAGATTGTCAGTAGAAGA 58.415 33.333 0.00 0.00 0.00 2.87
2200 2485 8.764524 AATTGTGTAGATTGTCAGTAGAAGAC 57.235 34.615 0.00 0.00 36.55 3.01
2201 2486 7.526142 TTGTGTAGATTGTCAGTAGAAGACT 57.474 36.000 0.00 0.00 39.82 3.24
2202 2487 7.147143 TGTGTAGATTGTCAGTAGAAGACTC 57.853 40.000 0.00 0.00 35.64 3.36
2203 2488 6.151312 TGTGTAGATTGTCAGTAGAAGACTCC 59.849 42.308 0.00 0.00 35.64 3.85
2256 2541 8.322091 GGTATATTAGTGGAAATAGGCTGTCAT 58.678 37.037 0.00 0.00 0.00 3.06
2350 2639 6.042208 AGGATGGAAGTAAATACTAGAGGCAC 59.958 42.308 0.00 0.00 34.99 5.01
2423 2712 3.549471 CAGAATACTCTGTAGCGTGCTTG 59.451 47.826 0.00 0.00 43.64 4.01
2875 3164 0.254178 ATCAGAGCTGGGTTCGCAAT 59.746 50.000 0.00 0.00 0.00 3.56
3307 3596 3.450457 AGCTCAGGTACCTTCAAGATGAG 59.550 47.826 13.15 15.49 0.00 2.90
3325 3614 2.094182 TGAGGCATCAGTCGTTTACTCC 60.094 50.000 0.00 0.00 35.76 3.85
3442 3731 4.775664 TGCTGATTTGCATCGATTAATCG 58.224 39.130 27.99 27.99 43.64 3.34
3528 3817 6.716284 TGTCATACAGTCAATGTTGGGATTA 58.284 36.000 0.00 0.00 39.96 1.75
3758 4054 7.287696 ACAAAGTTGAGACACTTATTTTGGGAT 59.712 33.333 0.00 0.00 35.87 3.85
3825 4121 9.462174 TGTTATGCTTTGTTCTATTTTTCAGTG 57.538 29.630 0.00 0.00 0.00 3.66
3842 4138 4.258543 TCAGTGCTTATTTTTCCCTACCG 58.741 43.478 0.00 0.00 0.00 4.02
4256 4562 7.625498 TGTGTATTATAATCCCATGTCCTCA 57.375 36.000 0.00 0.00 0.00 3.86
4275 4581 3.937706 CTCATGACTGTTCCTGGTGATTC 59.062 47.826 0.00 0.00 0.00 2.52
4344 4650 0.661020 AGGCTGTTTTTGAACCGACG 59.339 50.000 0.00 0.00 0.00 5.12
4362 4668 1.476891 ACGTTCTGTCCGATGTATGCT 59.523 47.619 0.00 0.00 0.00 3.79
4590 4896 6.727824 AGAACACTTGGAAATATTCGTCTG 57.272 37.500 0.00 0.00 0.00 3.51
4632 4938 5.163673 GCAAAAGATGGTTCCTGAGAAGATC 60.164 44.000 0.00 0.00 30.91 2.75
4657 4963 5.227569 TCATCACATTGTCAAGGTACACT 57.772 39.130 1.97 0.00 0.00 3.55
4722 5028 4.394920 CCTAATCCGTTTGTTGTATGCACT 59.605 41.667 0.00 0.00 0.00 4.40
4723 5029 5.583061 CCTAATCCGTTTGTTGTATGCACTA 59.417 40.000 0.00 0.00 0.00 2.74
5655 5994 2.147387 AGTGAACCGGCCAGGAACT 61.147 57.895 18.74 14.77 45.00 3.01
5760 6099 4.681781 CGTTCTAGATCAATGCCAAGAGGT 60.682 45.833 0.00 0.00 37.19 3.85
5763 6102 2.996631 AGATCAATGCCAAGAGGTGAC 58.003 47.619 0.00 0.00 37.19 3.67
5772 6111 3.591254 AAGAGGTGACCCGCTTCGC 62.591 63.158 0.00 0.00 46.62 4.70
5773 6112 4.373116 GAGGTGACCCGCTTCGCA 62.373 66.667 0.00 0.00 35.12 5.10
5774 6113 3.876589 GAGGTGACCCGCTTCGCAA 62.877 63.158 0.00 0.00 35.12 4.85
6135 6474 0.313672 GTATCGAGGAGCTGCAGAGG 59.686 60.000 20.43 0.00 0.00 3.69
6451 6790 1.400142 TCCGCAAAGCAATATTCACCG 59.600 47.619 0.00 0.00 0.00 4.94
6597 6936 3.312421 GCTGTGTCTAGTGAAAAACAGCA 59.688 43.478 17.97 2.53 45.58 4.41
6740 7097 4.415332 GTCTCTTGGCGACGGCGA 62.415 66.667 18.90 14.23 41.24 5.54
6749 7106 2.101770 CGACGGCGACCTAACTCC 59.898 66.667 16.62 0.00 40.82 3.85
7034 7391 6.810676 TGATCATTAGATGCTCTTCGAATAGC 59.189 38.462 24.22 24.22 39.25 2.97
7073 7430 7.553881 TCGATGAGGGTTTTGAATCTATTTC 57.446 36.000 0.00 0.00 34.72 2.17
7109 7466 7.488150 TGTGTGTGTGAATAGATCGTTAGATTC 59.512 37.037 0.00 0.00 37.19 2.52
7122 7479 5.253330 TCGTTAGATTCTTGAATGCCCTTT 58.747 37.500 0.09 0.00 0.00 3.11
7124 7481 5.654497 GTTAGATTCTTGAATGCCCTTTGG 58.346 41.667 0.09 0.00 0.00 3.28
7133 7490 3.264947 GAATGCCCTTTGGAGAAATTGC 58.735 45.455 0.00 0.00 0.00 3.56
7270 7655 7.075121 TGCTGTTACACATAAGTTTTGAATCG 58.925 34.615 0.00 0.00 0.00 3.34
7274 7659 7.801315 TGTTACACATAAGTTTTGAATCGCTTC 59.199 33.333 0.00 0.00 0.00 3.86
7279 7664 1.541588 AGTTTTGAATCGCTTCTGGCC 59.458 47.619 0.00 0.00 37.74 5.36
7298 7683 5.297547 TGGCCAAAATAACGCAAATGTAAA 58.702 33.333 0.61 0.00 0.00 2.01
7309 7694 6.320494 ACGCAAATGTAAAAATCTGGTACA 57.680 33.333 0.00 0.00 32.58 2.90
7346 7731 8.879427 ACTTCCATACCAAAATATATAAGGCC 57.121 34.615 0.00 0.00 0.00 5.19
7347 7732 8.678798 ACTTCCATACCAAAATATATAAGGCCT 58.321 33.333 0.00 0.00 0.00 5.19
7348 7733 9.533831 CTTCCATACCAAAATATATAAGGCCTT 57.466 33.333 24.18 24.18 0.00 4.35
7349 7734 8.877864 TCCATACCAAAATATATAAGGCCTTG 57.122 34.615 28.77 8.35 0.00 3.61
7350 7735 8.452868 TCCATACCAAAATATATAAGGCCTTGT 58.547 33.333 28.77 24.00 0.00 3.16
7351 7736 9.088987 CCATACCAAAATATATAAGGCCTTGTT 57.911 33.333 28.77 17.24 0.00 2.83
7353 7738 7.272037 ACCAAAATATATAAGGCCTTGTTCG 57.728 36.000 28.77 0.21 0.00 3.95
7354 7739 6.264518 ACCAAAATATATAAGGCCTTGTTCGG 59.735 38.462 28.77 16.31 0.00 4.30
7355 7740 6.264518 CCAAAATATATAAGGCCTTGTTCGGT 59.735 38.462 28.77 10.68 0.00 4.69
7356 7741 7.201875 CCAAAATATATAAGGCCTTGTTCGGTT 60.202 37.037 28.77 12.22 0.00 4.44
7357 7742 6.877611 AATATATAAGGCCTTGTTCGGTTG 57.122 37.500 28.77 0.00 0.00 3.77
7358 7743 2.579410 ATAAGGCCTTGTTCGGTTGT 57.421 45.000 28.77 0.00 0.00 3.32
7359 7744 3.706600 ATAAGGCCTTGTTCGGTTGTA 57.293 42.857 28.77 3.74 0.00 2.41
7360 7745 1.892209 AAGGCCTTGTTCGGTTGTAG 58.108 50.000 19.73 0.00 0.00 2.74
7361 7746 1.053424 AGGCCTTGTTCGGTTGTAGA 58.947 50.000 0.00 0.00 0.00 2.59
7362 7747 1.002087 AGGCCTTGTTCGGTTGTAGAG 59.998 52.381 0.00 0.00 0.00 2.43
7363 7748 1.270678 GGCCTTGTTCGGTTGTAGAGT 60.271 52.381 0.00 0.00 0.00 3.24
7364 7749 2.028748 GGCCTTGTTCGGTTGTAGAGTA 60.029 50.000 0.00 0.00 0.00 2.59
7365 7750 3.369157 GGCCTTGTTCGGTTGTAGAGTAT 60.369 47.826 0.00 0.00 0.00 2.12
7366 7751 4.251268 GCCTTGTTCGGTTGTAGAGTATT 58.749 43.478 0.00 0.00 0.00 1.89
7367 7752 4.694037 GCCTTGTTCGGTTGTAGAGTATTT 59.306 41.667 0.00 0.00 0.00 1.40
7368 7753 5.870978 GCCTTGTTCGGTTGTAGAGTATTTA 59.129 40.000 0.00 0.00 0.00 1.40
7369 7754 6.369615 GCCTTGTTCGGTTGTAGAGTATTTAA 59.630 38.462 0.00 0.00 0.00 1.52
7370 7755 7.065443 GCCTTGTTCGGTTGTAGAGTATTTAAT 59.935 37.037 0.00 0.00 0.00 1.40
7371 7756 8.601476 CCTTGTTCGGTTGTAGAGTATTTAATC 58.399 37.037 0.00 0.00 0.00 1.75
7372 7757 8.483307 TTGTTCGGTTGTAGAGTATTTAATCC 57.517 34.615 0.00 0.00 0.00 3.01
7373 7758 7.844009 TGTTCGGTTGTAGAGTATTTAATCCT 58.156 34.615 0.00 0.00 0.00 3.24
7374 7759 7.977853 TGTTCGGTTGTAGAGTATTTAATCCTC 59.022 37.037 0.00 0.00 0.00 3.71
7375 7760 7.893124 TCGGTTGTAGAGTATTTAATCCTCT 57.107 36.000 5.43 5.43 38.94 3.69
7376 7761 8.985315 TCGGTTGTAGAGTATTTAATCCTCTA 57.015 34.615 3.59 3.59 36.90 2.43
7377 7762 9.064706 TCGGTTGTAGAGTATTTAATCCTCTAG 57.935 37.037 7.39 0.00 38.22 2.43
7378 7763 8.848182 CGGTTGTAGAGTATTTAATCCTCTAGT 58.152 37.037 7.39 0.00 38.22 2.57
7379 7764 9.968870 GGTTGTAGAGTATTTAATCCTCTAGTG 57.031 37.037 7.39 0.00 38.22 2.74
7394 7779 7.366847 TCCTCTAGTGAATTTAATCCTCTGG 57.633 40.000 0.00 0.00 0.00 3.86
7395 7780 7.132805 TCCTCTAGTGAATTTAATCCTCTGGA 58.867 38.462 0.00 0.00 35.55 3.86
7396 7781 7.288852 TCCTCTAGTGAATTTAATCCTCTGGAG 59.711 40.741 1.02 1.02 34.05 3.86
7408 7793 2.926778 CTCTGGAGGATTGGGTGATC 57.073 55.000 0.00 0.00 0.00 2.92
7409 7794 1.419387 CTCTGGAGGATTGGGTGATCC 59.581 57.143 0.00 0.00 44.91 3.36
7422 7807 0.831307 GTGATCCCTCACCCTACACC 59.169 60.000 0.00 0.00 45.06 4.16
7423 7808 0.415830 TGATCCCTCACCCTACACCA 59.584 55.000 0.00 0.00 0.00 4.17
7424 7809 1.203376 TGATCCCTCACCCTACACCAA 60.203 52.381 0.00 0.00 0.00 3.67
7425 7810 1.913419 GATCCCTCACCCTACACCAAA 59.087 52.381 0.00 0.00 0.00 3.28
7426 7811 2.053747 TCCCTCACCCTACACCAAAT 57.946 50.000 0.00 0.00 0.00 2.32
7427 7812 1.913419 TCCCTCACCCTACACCAAATC 59.087 52.381 0.00 0.00 0.00 2.17
7428 7813 1.064685 CCCTCACCCTACACCAAATCC 60.065 57.143 0.00 0.00 0.00 3.01
7429 7814 1.064685 CCTCACCCTACACCAAATCCC 60.065 57.143 0.00 0.00 0.00 3.85
7430 7815 0.996583 TCACCCTACACCAAATCCCC 59.003 55.000 0.00 0.00 0.00 4.81
7431 7816 0.999712 CACCCTACACCAAATCCCCT 59.000 55.000 0.00 0.00 0.00 4.79
7432 7817 1.064685 CACCCTACACCAAATCCCCTC 60.065 57.143 0.00 0.00 0.00 4.30
7433 7818 0.180406 CCCTACACCAAATCCCCTCG 59.820 60.000 0.00 0.00 0.00 4.63
7434 7819 0.180406 CCTACACCAAATCCCCTCGG 59.820 60.000 0.00 0.00 0.00 4.63
7435 7820 0.180406 CTACACCAAATCCCCTCGGG 59.820 60.000 0.00 0.00 46.11 5.14
7450 7835 3.991367 CCTCGGGGACTAAATACATGTC 58.009 50.000 0.00 0.00 33.58 3.06
7451 7836 3.386726 CCTCGGGGACTAAATACATGTCA 59.613 47.826 0.00 0.00 32.84 3.58
7452 7837 4.040461 CCTCGGGGACTAAATACATGTCAT 59.960 45.833 0.00 0.00 32.84 3.06
7453 7838 5.454755 CCTCGGGGACTAAATACATGTCATT 60.455 44.000 0.00 0.98 32.84 2.57
7454 7839 5.364778 TCGGGGACTAAATACATGTCATTG 58.635 41.667 0.00 0.00 32.84 2.82
7455 7840 5.104693 TCGGGGACTAAATACATGTCATTGT 60.105 40.000 0.00 0.00 32.84 2.71
7456 7841 5.007626 CGGGGACTAAATACATGTCATTGTG 59.992 44.000 0.00 0.00 32.84 3.33
7457 7842 6.119536 GGGGACTAAATACATGTCATTGTGA 58.880 40.000 0.00 0.00 32.84 3.58
7458 7843 6.601613 GGGGACTAAATACATGTCATTGTGAA 59.398 38.462 0.00 0.00 32.84 3.18
7459 7844 7.285401 GGGGACTAAATACATGTCATTGTGAAT 59.715 37.037 0.00 0.00 32.84 2.57
7460 7845 8.686334 GGGACTAAATACATGTCATTGTGAATT 58.314 33.333 0.00 0.00 32.84 2.17
7461 7846 9.722056 GGACTAAATACATGTCATTGTGAATTC 57.278 33.333 0.00 0.00 32.84 2.17
7462 7847 9.722056 GACTAAATACATGTCATTGTGAATTCC 57.278 33.333 0.00 0.00 0.00 3.01
7463 7848 9.241919 ACTAAATACATGTCATTGTGAATTCCA 57.758 29.630 0.00 0.00 0.00 3.53
7468 7853 7.885009 ACATGTCATTGTGAATTCCATATCA 57.115 32.000 2.27 0.00 0.00 2.15
7469 7854 7.709947 ACATGTCATTGTGAATTCCATATCAC 58.290 34.615 2.27 0.00 44.84 3.06
7470 7855 7.558807 ACATGTCATTGTGAATTCCATATCACT 59.441 33.333 2.27 0.00 44.86 3.41
7471 7856 7.943079 TGTCATTGTGAATTCCATATCACTT 57.057 32.000 2.27 0.00 44.86 3.16
7472 7857 9.631257 ATGTCATTGTGAATTCCATATCACTTA 57.369 29.630 2.27 0.00 44.86 2.24
7473 7858 9.631257 TGTCATTGTGAATTCCATATCACTTAT 57.369 29.630 2.27 0.00 44.86 1.73
7479 7864 9.571816 TGTGAATTCCATATCACTTATTATGCA 57.428 29.630 2.27 0.00 44.86 3.96
7483 7868 7.848223 TTCCATATCACTTATTATGCATCCG 57.152 36.000 0.19 0.00 0.00 4.18
7484 7869 6.348498 TCCATATCACTTATTATGCATCCGG 58.652 40.000 0.19 0.00 0.00 5.14
7485 7870 6.070251 TCCATATCACTTATTATGCATCCGGT 60.070 38.462 0.19 0.00 0.00 5.28
7486 7871 6.599244 CCATATCACTTATTATGCATCCGGTT 59.401 38.462 0.19 0.00 0.00 4.44
7487 7872 7.768582 CCATATCACTTATTATGCATCCGGTTA 59.231 37.037 0.19 0.00 0.00 2.85
7488 7873 9.161629 CATATCACTTATTATGCATCCGGTTAA 57.838 33.333 0.19 0.00 0.00 2.01
7489 7874 9.905713 ATATCACTTATTATGCATCCGGTTAAT 57.094 29.630 0.19 0.00 0.00 1.40
7490 7875 7.667043 TCACTTATTATGCATCCGGTTAATC 57.333 36.000 0.19 0.00 0.00 1.75
7491 7876 6.653320 TCACTTATTATGCATCCGGTTAATCC 59.347 38.462 0.19 0.00 0.00 3.01
7492 7877 6.655003 CACTTATTATGCATCCGGTTAATCCT 59.345 38.462 0.19 0.00 0.00 3.24
7493 7878 6.879458 ACTTATTATGCATCCGGTTAATCCTC 59.121 38.462 0.19 0.00 0.00 3.71
7494 7879 4.974645 TTATGCATCCGGTTAATCCTCT 57.025 40.909 0.19 0.00 0.00 3.69
7495 7880 6.620877 ATTATGCATCCGGTTAATCCTCTA 57.379 37.500 0.19 0.00 0.00 2.43
7496 7881 4.543590 ATGCATCCGGTTAATCCTCTAG 57.456 45.455 0.00 0.00 0.00 2.43
7497 7882 2.632996 TGCATCCGGTTAATCCTCTAGG 59.367 50.000 0.00 0.00 0.00 3.02
7498 7883 2.613223 GCATCCGGTTAATCCTCTAGGC 60.613 54.545 0.00 0.00 34.44 3.93
7499 7884 1.713297 TCCGGTTAATCCTCTAGGCC 58.287 55.000 0.00 0.00 34.44 5.19
7500 7885 0.317479 CCGGTTAATCCTCTAGGCCG 59.683 60.000 0.00 5.36 36.17 6.13
7501 7886 0.319641 CGGTTAATCCTCTAGGCCGC 60.320 60.000 0.00 0.00 31.17 6.53
7502 7887 0.035036 GGTTAATCCTCTAGGCCGCC 59.965 60.000 0.00 0.00 34.44 6.13
7503 7888 0.756903 GTTAATCCTCTAGGCCGCCA 59.243 55.000 13.15 0.00 34.44 5.69
7504 7889 0.756903 TTAATCCTCTAGGCCGCCAC 59.243 55.000 13.15 0.00 34.44 5.01
7505 7890 1.119574 TAATCCTCTAGGCCGCCACC 61.120 60.000 13.15 0.00 34.44 4.61
7506 7891 3.696518 ATCCTCTAGGCCGCCACCA 62.697 63.158 13.15 0.00 34.44 4.17
7507 7892 4.162690 CCTCTAGGCCGCCACCAC 62.163 72.222 13.15 0.00 0.00 4.16
7508 7893 4.162690 CTCTAGGCCGCCACCACC 62.163 72.222 13.15 0.00 0.00 4.61
7510 7895 4.778143 CTAGGCCGCCACCACCAC 62.778 72.222 13.15 0.00 0.00 4.16
7517 7902 4.722700 GCCACCACCACGATGCCT 62.723 66.667 0.00 0.00 0.00 4.75
7518 7903 2.034066 CCACCACCACGATGCCTT 59.966 61.111 0.00 0.00 0.00 4.35
7519 7904 2.334946 CCACCACCACGATGCCTTG 61.335 63.158 0.00 0.00 0.00 3.61
7520 7905 2.672996 ACCACCACGATGCCTTGC 60.673 61.111 0.00 0.00 0.00 4.01
7521 7906 2.360350 CCACCACGATGCCTTGCT 60.360 61.111 0.00 0.00 0.00 3.91
7522 7907 2.693762 CCACCACGATGCCTTGCTG 61.694 63.158 0.00 0.00 0.00 4.41
7523 7908 1.968017 CACCACGATGCCTTGCTGT 60.968 57.895 0.00 0.00 0.00 4.40
7524 7909 1.228245 ACCACGATGCCTTGCTGTT 60.228 52.632 0.00 0.00 0.00 3.16
7525 7910 0.036164 ACCACGATGCCTTGCTGTTA 59.964 50.000 0.00 0.00 0.00 2.41
7526 7911 1.164411 CCACGATGCCTTGCTGTTAA 58.836 50.000 0.00 0.00 0.00 2.01
7527 7912 1.745087 CCACGATGCCTTGCTGTTAAT 59.255 47.619 0.00 0.00 0.00 1.40
7528 7913 2.942376 CCACGATGCCTTGCTGTTAATA 59.058 45.455 0.00 0.00 0.00 0.98
7529 7914 3.242739 CCACGATGCCTTGCTGTTAATAC 60.243 47.826 0.00 0.00 0.00 1.89
7530 7915 3.373748 CACGATGCCTTGCTGTTAATACA 59.626 43.478 0.00 0.00 0.00 2.29
7545 7930 7.450124 TGTTAATACAGAGAGAACGAAGAGT 57.550 36.000 0.00 0.00 0.00 3.24
7546 7931 7.306213 TGTTAATACAGAGAGAACGAAGAGTG 58.694 38.462 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 4.923281 ACTTTGATTTCTAAACATTGCGGC 59.077 37.500 0.00 0.00 0.00 6.53
41 43 5.368989 AGTAGCTACTTTTGCAACTCAGTT 58.631 37.500 20.95 0.00 31.13 3.16
42 44 4.962155 AGTAGCTACTTTTGCAACTCAGT 58.038 39.130 20.95 4.43 31.13 3.41
45 47 3.685272 GGGAGTAGCTACTTTTGCAACTC 59.315 47.826 26.71 12.81 36.50 3.01
61 63 9.902684 CTCTTATATTAGATTACGGAGGGAGTA 57.097 37.037 0.00 0.00 0.00 2.59
62 64 7.339976 GCTCTTATATTAGATTACGGAGGGAGT 59.660 40.741 0.00 0.00 0.00 3.85
63 65 7.467539 CGCTCTTATATTAGATTACGGAGGGAG 60.468 44.444 0.00 0.00 34.63 4.30
64 66 6.318144 CGCTCTTATATTAGATTACGGAGGGA 59.682 42.308 0.00 0.00 34.63 4.20
65 67 6.095160 ACGCTCTTATATTAGATTACGGAGGG 59.905 42.308 11.26 0.00 37.30 4.30
66 68 7.086230 ACGCTCTTATATTAGATTACGGAGG 57.914 40.000 11.26 0.00 0.00 4.30
67 69 8.967552 AAACGCTCTTATATTAGATTACGGAG 57.032 34.615 11.26 0.00 0.00 4.63
83 85 9.570488 CACTACTTTAGTAATCTAAACGCTCTT 57.430 33.333 0.00 0.00 40.05 2.85
84 86 8.738106 ACACTACTTTAGTAATCTAAACGCTCT 58.262 33.333 0.00 0.00 40.05 4.09
85 87 8.908172 ACACTACTTTAGTAATCTAAACGCTC 57.092 34.615 0.00 0.00 40.05 5.03
86 88 9.351570 GAACACTACTTTAGTAATCTAAACGCT 57.648 33.333 0.00 0.00 40.05 5.07
87 89 9.351570 AGAACACTACTTTAGTAATCTAAACGC 57.648 33.333 0.00 0.00 40.05 4.84
93 95 9.351570 GCGTTTAGAACACTACTTTAGTAATCT 57.648 33.333 5.76 5.76 37.23 2.40
94 96 9.351570 AGCGTTTAGAACACTACTTTAGTAATC 57.648 33.333 0.00 0.00 37.23 1.75
95 97 9.351570 GAGCGTTTAGAACACTACTTTAGTAAT 57.648 33.333 0.00 0.00 37.23 1.89
96 98 8.571336 AGAGCGTTTAGAACACTACTTTAGTAA 58.429 33.333 0.00 0.00 37.23 2.24
97 99 8.103948 AGAGCGTTTAGAACACTACTTTAGTA 57.896 34.615 0.00 0.00 37.23 1.82
98 100 6.979465 AGAGCGTTTAGAACACTACTTTAGT 58.021 36.000 0.00 0.00 40.28 2.24
99 101 7.870588 AAGAGCGTTTAGAACACTACTTTAG 57.129 36.000 0.00 0.00 0.00 1.85
114 116 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
115 117 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
116 118 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
117 119 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
118 120 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
124 126 9.939424 AGAAGTACTCCCTCTGTAAACTAATAT 57.061 33.333 0.00 0.00 0.00 1.28
125 127 9.406113 GAGAAGTACTCCCTCTGTAAACTAATA 57.594 37.037 14.56 0.00 39.53 0.98
126 128 8.117312 AGAGAAGTACTCCCTCTGTAAACTAAT 58.883 37.037 20.55 0.91 45.96 1.73
127 129 7.468496 AGAGAAGTACTCCCTCTGTAAACTAA 58.532 38.462 20.55 0.00 45.96 2.24
128 130 7.030234 AGAGAAGTACTCCCTCTGTAAACTA 57.970 40.000 20.55 0.00 45.96 2.24
129 131 5.894653 AGAGAAGTACTCCCTCTGTAAACT 58.105 41.667 20.55 2.47 45.96 2.66
130 132 7.885009 ATAGAGAAGTACTCCCTCTGTAAAC 57.115 40.000 25.89 4.93 45.96 2.01
131 133 8.896722 AAATAGAGAAGTACTCCCTCTGTAAA 57.103 34.615 25.89 13.93 45.96 2.01
134 136 9.138596 GAATAAATAGAGAAGTACTCCCTCTGT 57.861 37.037 25.89 20.42 45.96 3.41
135 137 9.137459 TGAATAAATAGAGAAGTACTCCCTCTG 57.863 37.037 25.89 0.00 45.96 3.35
136 138 9.716556 TTGAATAAATAGAGAAGTACTCCCTCT 57.283 33.333 23.11 23.11 45.96 3.69
137 139 9.752961 GTTGAATAAATAGAGAAGTACTCCCTC 57.247 37.037 14.19 14.19 45.96 4.30
138 140 8.414778 CGTTGAATAAATAGAGAAGTACTCCCT 58.585 37.037 0.00 0.00 45.96 4.20
139 141 8.411683 TCGTTGAATAAATAGAGAAGTACTCCC 58.588 37.037 0.00 0.00 45.96 4.30
140 142 9.798994 TTCGTTGAATAAATAGAGAAGTACTCC 57.201 33.333 0.00 0.00 45.96 3.85
324 327 6.070251 TGACATGTCAGGTTAATAGACCATGT 60.070 38.462 24.56 10.76 42.35 3.21
331 334 7.200455 TGTACGATGACATGTCAGGTTAATAG 58.800 38.462 30.63 16.73 43.61 1.73
484 522 7.363094 GGACGGGTATTTCATGTATTTTCCAAA 60.363 37.037 0.00 0.00 0.00 3.28
579 621 5.163713 GGAGTGCGATGCTATCTTTCTTTTT 60.164 40.000 0.00 0.00 0.00 1.94
580 622 4.333926 GGAGTGCGATGCTATCTTTCTTTT 59.666 41.667 0.00 0.00 0.00 2.27
581 623 3.873952 GGAGTGCGATGCTATCTTTCTTT 59.126 43.478 0.00 0.00 0.00 2.52
582 624 3.118629 TGGAGTGCGATGCTATCTTTCTT 60.119 43.478 0.00 0.00 0.00 2.52
583 625 2.432146 TGGAGTGCGATGCTATCTTTCT 59.568 45.455 0.00 0.00 0.00 2.52
584 626 2.799412 CTGGAGTGCGATGCTATCTTTC 59.201 50.000 0.00 0.00 0.00 2.62
585 627 2.831333 CTGGAGTGCGATGCTATCTTT 58.169 47.619 0.00 0.00 0.00 2.52
586 628 1.539929 GCTGGAGTGCGATGCTATCTT 60.540 52.381 0.00 0.00 0.00 2.40
587 629 0.033228 GCTGGAGTGCGATGCTATCT 59.967 55.000 0.00 0.00 0.00 1.98
588 630 0.249615 TGCTGGAGTGCGATGCTATC 60.250 55.000 0.00 0.00 35.36 2.08
589 631 0.249784 CTGCTGGAGTGCGATGCTAT 60.250 55.000 0.00 0.00 35.36 2.97
590 632 1.142531 CTGCTGGAGTGCGATGCTA 59.857 57.895 0.00 0.00 35.36 3.49
591 633 2.125229 CTGCTGGAGTGCGATGCT 60.125 61.111 0.00 0.00 35.36 3.79
592 634 3.200593 CCTGCTGGAGTGCGATGC 61.201 66.667 2.92 0.00 35.36 3.91
593 635 1.812922 GTCCTGCTGGAGTGCGATG 60.813 63.158 13.36 0.00 44.16 3.84
594 636 2.581354 GTCCTGCTGGAGTGCGAT 59.419 61.111 13.36 0.00 44.16 4.58
595 637 3.695606 GGTCCTGCTGGAGTGCGA 61.696 66.667 13.36 0.00 44.16 5.10
596 638 4.767255 GGGTCCTGCTGGAGTGCG 62.767 72.222 13.36 0.00 44.16 5.34
597 639 4.767255 CGGGTCCTGCTGGAGTGC 62.767 72.222 13.36 1.20 44.16 4.40
598 640 4.087892 CCGGGTCCTGCTGGAGTG 62.088 72.222 13.36 5.70 44.16 3.51
614 656 1.153309 ATTTACGGCTGCGGTACCC 60.153 57.895 18.08 0.00 0.00 3.69
617 659 0.103572 GAGGATTTACGGCTGCGGTA 59.896 55.000 15.00 15.00 0.00 4.02
624 667 1.202545 GGAGACTGGAGGATTTACGGC 60.203 57.143 0.00 0.00 0.00 5.68
640 683 2.851045 GGTTTTGGGCAGGGGAGA 59.149 61.111 0.00 0.00 0.00 3.71
656 699 1.153706 CGGTGGTGGCTAGTTACGG 60.154 63.158 0.00 0.00 0.00 4.02
732 776 3.311596 GGCAGTTTCGTACTTTCACAAGT 59.688 43.478 0.00 0.00 45.73 3.16
781 825 2.723464 TTAGGGCTGTGGGGGCAAAC 62.723 60.000 0.00 0.00 0.00 2.93
786 830 2.123726 GCATTAGGGCTGTGGGGG 60.124 66.667 0.00 0.00 0.00 5.40
1284 1338 2.614057 CAATAAACGCTCCATCCAGACC 59.386 50.000 0.00 0.00 0.00 3.85
1426 1488 0.826715 TAGCCTACAGAAGCAGCCAG 59.173 55.000 0.00 0.00 0.00 4.85
1460 1522 3.369892 CCTCACCCCAGAAGTGAATACTG 60.370 52.174 0.00 0.00 43.36 2.74
1497 1567 0.610232 GCCATGACAGCTGAAACCCT 60.610 55.000 23.35 0.00 0.00 4.34
1524 1594 0.179000 GCCCACCTCATCCTACACAG 59.821 60.000 0.00 0.00 0.00 3.66
1587 1657 9.314321 GTCTAACATGTTATATGTGCAAGTAGT 57.686 33.333 18.35 0.00 31.80 2.73
1603 1673 7.338710 AGGCATGTAAGTATTGTCTAACATGT 58.661 34.615 13.07 0.00 43.74 3.21
1610 1680 4.408921 TGGCTAGGCATGTAAGTATTGTCT 59.591 41.667 16.16 0.00 0.00 3.41
1685 1764 8.526978 TCAGCATAGCAGAAATAGGTCTATAAG 58.473 37.037 0.00 0.00 0.00 1.73
1700 1779 1.535896 GCATCCATGTCAGCATAGCAG 59.464 52.381 0.00 0.00 33.30 4.24
1701 1780 1.142262 AGCATCCATGTCAGCATAGCA 59.858 47.619 0.00 0.00 33.30 3.49
1725 1804 1.955778 CAAGTCACCAATCTGCACCAA 59.044 47.619 0.00 0.00 0.00 3.67
1813 1892 2.238353 CTTCGTGTGAAGTGCCAGG 58.762 57.895 0.00 0.00 45.38 4.45
1925 2004 0.179084 ACCTGTCGAACCACACACTG 60.179 55.000 0.00 0.00 0.00 3.66
1952 2031 8.602424 TCAAACTTGATAGTTCTTCCCTGATAA 58.398 33.333 0.00 0.00 43.74 1.75
1957 2036 9.981460 ATTAATCAAACTTGATAGTTCTTCCCT 57.019 29.630 5.40 0.00 46.60 4.20
1979 2058 3.456644 TGGCCGAAAGTATCCAGGATTAA 59.543 43.478 7.44 0.00 0.00 1.40
2014 2093 1.209504 GGGTACTTCACAGCCTATGCA 59.790 52.381 0.00 0.00 41.13 3.96
2081 2364 4.131596 GGTTAAGTTTGGCTGTACACTCA 58.868 43.478 0.00 0.00 0.00 3.41
2083 2366 4.159244 TGGTTAAGTTTGGCTGTACACT 57.841 40.909 0.00 0.00 0.00 3.55
2140 2425 6.255453 AGCACACACATTCAAACATACAAAAC 59.745 34.615 0.00 0.00 0.00 2.43
2141 2426 6.255237 CAGCACACACATTCAAACATACAAAA 59.745 34.615 0.00 0.00 0.00 2.44
2142 2427 5.747675 CAGCACACACATTCAAACATACAAA 59.252 36.000 0.00 0.00 0.00 2.83
2143 2428 5.280164 CAGCACACACATTCAAACATACAA 58.720 37.500 0.00 0.00 0.00 2.41
2144 2429 4.261530 CCAGCACACACATTCAAACATACA 60.262 41.667 0.00 0.00 0.00 2.29
2145 2430 4.229096 CCAGCACACACATTCAAACATAC 58.771 43.478 0.00 0.00 0.00 2.39
2146 2431 3.888323 ACCAGCACACACATTCAAACATA 59.112 39.130 0.00 0.00 0.00 2.29
2147 2432 2.694628 ACCAGCACACACATTCAAACAT 59.305 40.909 0.00 0.00 0.00 2.71
2148 2433 2.098614 ACCAGCACACACATTCAAACA 58.901 42.857 0.00 0.00 0.00 2.83
2149 2434 2.869233 ACCAGCACACACATTCAAAC 57.131 45.000 0.00 0.00 0.00 2.93
2150 2435 6.432472 TCAATATACCAGCACACACATTCAAA 59.568 34.615 0.00 0.00 0.00 2.69
2151 2436 5.942826 TCAATATACCAGCACACACATTCAA 59.057 36.000 0.00 0.00 0.00 2.69
2152 2437 5.495640 TCAATATACCAGCACACACATTCA 58.504 37.500 0.00 0.00 0.00 2.57
2153 2438 6.435430 TTCAATATACCAGCACACACATTC 57.565 37.500 0.00 0.00 0.00 2.67
2154 2439 7.093814 ACAATTCAATATACCAGCACACACATT 60.094 33.333 0.00 0.00 0.00 2.71
2155 2440 6.377996 ACAATTCAATATACCAGCACACACAT 59.622 34.615 0.00 0.00 0.00 3.21
2156 2441 5.709631 ACAATTCAATATACCAGCACACACA 59.290 36.000 0.00 0.00 0.00 3.72
2157 2442 6.029607 CACAATTCAATATACCAGCACACAC 58.970 40.000 0.00 0.00 0.00 3.82
2158 2443 5.709631 ACACAATTCAATATACCAGCACACA 59.290 36.000 0.00 0.00 0.00 3.72
2159 2444 6.194796 ACACAATTCAATATACCAGCACAC 57.805 37.500 0.00 0.00 0.00 3.82
2160 2445 7.334858 TCTACACAATTCAATATACCAGCACA 58.665 34.615 0.00 0.00 0.00 4.57
2161 2446 7.786178 TCTACACAATTCAATATACCAGCAC 57.214 36.000 0.00 0.00 0.00 4.40
2162 2447 8.839343 CAATCTACACAATTCAATATACCAGCA 58.161 33.333 0.00 0.00 0.00 4.41
2163 2448 8.840321 ACAATCTACACAATTCAATATACCAGC 58.160 33.333 0.00 0.00 0.00 4.85
2165 2450 9.898152 TGACAATCTACACAATTCAATATACCA 57.102 29.630 0.00 0.00 0.00 3.25
2171 2456 9.725019 TTCTACTGACAATCTACACAATTCAAT 57.275 29.630 0.00 0.00 0.00 2.57
2172 2457 9.208022 CTTCTACTGACAATCTACACAATTCAA 57.792 33.333 0.00 0.00 0.00 2.69
2173 2458 8.585018 TCTTCTACTGACAATCTACACAATTCA 58.415 33.333 0.00 0.00 0.00 2.57
2174 2459 8.865001 GTCTTCTACTGACAATCTACACAATTC 58.135 37.037 0.00 0.00 34.80 2.17
2175 2460 8.589338 AGTCTTCTACTGACAATCTACACAATT 58.411 33.333 0.00 0.00 36.93 2.32
2176 2461 8.128322 AGTCTTCTACTGACAATCTACACAAT 57.872 34.615 0.00 0.00 36.93 2.71
2177 2462 7.309255 GGAGTCTTCTACTGACAATCTACACAA 60.309 40.741 0.00 0.00 39.07 3.33
2178 2463 6.151312 GGAGTCTTCTACTGACAATCTACACA 59.849 42.308 0.00 0.00 39.07 3.72
2179 2464 6.557110 GGAGTCTTCTACTGACAATCTACAC 58.443 44.000 0.00 0.00 39.07 2.90
2180 2465 5.354513 CGGAGTCTTCTACTGACAATCTACA 59.645 44.000 0.00 0.00 39.07 2.74
2181 2466 5.354792 ACGGAGTCTTCTACTGACAATCTAC 59.645 44.000 0.00 0.00 29.74 2.59
2182 2467 5.498393 ACGGAGTCTTCTACTGACAATCTA 58.502 41.667 0.00 0.00 29.74 1.98
2183 2468 4.337145 ACGGAGTCTTCTACTGACAATCT 58.663 43.478 0.00 0.00 29.74 2.40
2184 2469 4.705337 ACGGAGTCTTCTACTGACAATC 57.295 45.455 0.00 0.00 29.74 2.67
2185 2470 5.470047 AAACGGAGTCTTCTACTGACAAT 57.530 39.130 0.00 0.00 45.00 2.71
2186 2471 4.931661 AAACGGAGTCTTCTACTGACAA 57.068 40.909 0.00 0.00 45.00 3.18
2187 2472 4.098960 ACAAAACGGAGTCTTCTACTGACA 59.901 41.667 0.00 0.00 45.00 3.58
2188 2473 4.618965 ACAAAACGGAGTCTTCTACTGAC 58.381 43.478 0.00 0.00 45.00 3.51
2189 2474 4.931661 ACAAAACGGAGTCTTCTACTGA 57.068 40.909 0.00 0.00 45.00 3.41
2190 2475 6.157211 ACATACAAAACGGAGTCTTCTACTG 58.843 40.000 0.00 0.00 45.00 2.74
2191 2476 6.342338 ACATACAAAACGGAGTCTTCTACT 57.658 37.500 0.00 0.00 45.00 2.57
2192 2477 7.170320 TCAAACATACAAAACGGAGTCTTCTAC 59.830 37.037 0.00 0.00 45.00 2.59
2193 2478 7.211573 TCAAACATACAAAACGGAGTCTTCTA 58.788 34.615 0.00 0.00 45.00 2.10
2194 2479 6.053005 TCAAACATACAAAACGGAGTCTTCT 58.947 36.000 0.00 0.00 45.00 2.85
2195 2480 6.295039 TCAAACATACAAAACGGAGTCTTC 57.705 37.500 0.00 0.00 45.00 2.87
2196 2481 6.687081 TTCAAACATACAAAACGGAGTCTT 57.313 33.333 0.00 0.00 45.00 3.01
2197 2482 6.262273 ACATTCAAACATACAAAACGGAGTCT 59.738 34.615 0.00 0.00 45.00 3.24
2198 2483 6.359617 CACATTCAAACATACAAAACGGAGTC 59.640 38.462 0.00 0.00 45.00 3.36
2200 2485 6.142161 CACACATTCAAACATACAAAACGGAG 59.858 38.462 0.00 0.00 0.00 4.63
2201 2486 5.974158 CACACATTCAAACATACAAAACGGA 59.026 36.000 0.00 0.00 0.00 4.69
2202 2487 5.746245 ACACACATTCAAACATACAAAACGG 59.254 36.000 0.00 0.00 0.00 4.44
2203 2488 6.626363 CACACACATTCAAACATACAAAACG 58.374 36.000 0.00 0.00 0.00 3.60
2256 2541 5.242434 TGCCTTTCTAGATAACTTTCGCAA 58.758 37.500 0.00 0.00 0.00 4.85
2350 2639 1.630369 TCCACCTCTGTTTCATGGGAG 59.370 52.381 0.00 0.00 0.00 4.30
2423 2712 2.695666 TGCTACTGCTCAGGGATAAGTC 59.304 50.000 1.66 0.00 40.48 3.01
2492 2781 3.889538 AGGTTAGAAACTTGGCTTCCAAC 59.110 43.478 0.00 0.00 38.75 3.77
2735 3024 1.798735 CGTCTGCATTGCCAGGAAG 59.201 57.895 6.12 0.00 33.64 3.46
2875 3164 8.084073 GGAAATGAAGAACTCACATTTGAATCA 58.916 33.333 17.20 0.00 41.96 2.57
3307 3596 2.674796 AGGAGTAAACGACTGATGCC 57.325 50.000 0.00 0.00 39.06 4.40
3325 3614 4.122046 CAAAAAGGTCAAAGGGAGCAAAG 58.878 43.478 0.00 0.00 46.51 2.77
3436 3725 3.485743 CGCGTCACATCAGAATCGATTAA 59.514 43.478 11.38 0.00 0.00 1.40
3442 3731 1.849219 GAGTCGCGTCACATCAGAATC 59.151 52.381 5.77 0.00 0.00 2.52
3445 3734 1.241315 TGGAGTCGCGTCACATCAGA 61.241 55.000 5.77 0.00 0.00 3.27
3446 3735 0.179127 ATGGAGTCGCGTCACATCAG 60.179 55.000 5.77 0.00 0.00 2.90
3528 3817 7.600375 CAGACTACACTGTTGAGTTGTATCAAT 59.400 37.037 0.00 0.00 41.05 2.57
3758 4054 4.775780 CCACCGAATATATTACTCCCTCCA 59.224 45.833 0.00 0.00 0.00 3.86
3823 4119 3.626217 CCTCGGTAGGGAAAAATAAGCAC 59.374 47.826 0.00 0.00 39.48 4.40
3842 4138 2.277084 CATACGGCCAAACACTACCTC 58.723 52.381 2.24 0.00 0.00 3.85
4017 4321 4.423732 CCACTTCAACAGGAACAAACAAG 58.576 43.478 0.00 0.00 0.00 3.16
4018 4322 3.367910 GCCACTTCAACAGGAACAAACAA 60.368 43.478 0.00 0.00 0.00 2.83
4019 4323 2.165437 GCCACTTCAACAGGAACAAACA 59.835 45.455 0.00 0.00 0.00 2.83
4020 4324 2.165437 TGCCACTTCAACAGGAACAAAC 59.835 45.455 0.00 0.00 0.00 2.93
4021 4325 2.451490 TGCCACTTCAACAGGAACAAA 58.549 42.857 0.00 0.00 0.00 2.83
4022 4326 2.136298 TGCCACTTCAACAGGAACAA 57.864 45.000 0.00 0.00 0.00 2.83
4023 4327 2.136298 TTGCCACTTCAACAGGAACA 57.864 45.000 0.00 0.00 0.00 3.18
4256 4562 4.226846 AGATGAATCACCAGGAACAGTCAT 59.773 41.667 0.00 0.00 0.00 3.06
4275 4581 7.498239 TCCTGAATGAAAAGCAGAAGATAGATG 59.502 37.037 0.00 0.00 0.00 2.90
4344 4650 3.165058 TGAGCATACATCGGACAGAAC 57.835 47.619 0.00 0.00 0.00 3.01
4362 4668 6.374053 TGTCATTGAGTTCAGAACAAAGTTGA 59.626 34.615 15.85 8.53 0.00 3.18
4632 4938 4.450757 TGTACCTTGACAATGTGATGAACG 59.549 41.667 6.39 0.00 0.00 3.95
4657 4963 2.835580 TGTACCGTCGATTTCCCAAA 57.164 45.000 0.00 0.00 0.00 3.28
4722 5028 4.606697 AGACCCCAGTAGCTCCTACATATA 59.393 45.833 0.00 0.00 39.22 0.86
4723 5029 3.403051 AGACCCCAGTAGCTCCTACATAT 59.597 47.826 0.00 0.00 39.22 1.78
5268 5594 7.600065 CACATCTGACTGATTTCCAAGAAATT 58.400 34.615 4.20 0.00 32.05 1.82
5655 5994 0.030195 TCCCAGGCATCATACCTCCA 60.030 55.000 0.00 0.00 34.42 3.86
5772 6111 0.464735 TCAACGGACCCTGGTTGTTG 60.465 55.000 20.57 20.57 43.04 3.33
5773 6112 0.476771 ATCAACGGACCCTGGTTGTT 59.523 50.000 9.66 0.00 43.04 2.83
5774 6113 0.476771 AATCAACGGACCCTGGTTGT 59.523 50.000 9.66 0.00 43.04 3.32
6135 6474 1.204146 TCTCAGGGTGGTAATCAGGC 58.796 55.000 0.00 0.00 0.00 4.85
6451 6790 0.037975 TCTAGGGTTTTCGTCACGGC 60.038 55.000 0.00 0.00 0.00 5.68
6486 6825 1.839354 TGTGAGCTCAATATGGCCTGA 59.161 47.619 20.19 0.00 0.00 3.86
6597 6936 9.998752 ACCTAAGCTATAGAGAATACACCATAT 57.001 33.333 3.21 0.00 0.00 1.78
6749 7106 3.801997 ATTCCCAGGCTCCAGCGG 61.802 66.667 0.00 0.00 43.26 5.52
6998 7355 5.514204 GCATCTAATGATCAAAGCAACACAC 59.486 40.000 0.00 0.00 0.00 3.82
6999 7356 5.416639 AGCATCTAATGATCAAAGCAACACA 59.583 36.000 0.00 0.00 0.00 3.72
7034 7391 4.418392 CTCATCGAAGGGCATTCAAAAAG 58.582 43.478 12.78 0.34 37.83 2.27
7073 7430 2.209273 TCACACACACATCGAACCTTG 58.791 47.619 0.00 0.00 0.00 3.61
7076 7433 4.242475 TCTATTCACACACACATCGAACC 58.758 43.478 0.00 0.00 0.00 3.62
7109 7466 4.813750 ATTTCTCCAAAGGGCATTCAAG 57.186 40.909 0.00 0.00 0.00 3.02
7122 7479 5.738783 GCAAACTAACCTTGCAATTTCTCCA 60.739 40.000 0.00 0.00 46.78 3.86
7124 7481 5.829233 GCAAACTAACCTTGCAATTTCTC 57.171 39.130 0.00 0.00 46.78 2.87
7133 7490 6.507023 AGAAACATGAAGCAAACTAACCTTG 58.493 36.000 0.00 0.00 0.00 3.61
7249 7612 8.015658 AGAAGCGATTCAAAACTTATGTGTAAC 58.984 33.333 16.78 0.00 37.35 2.50
7252 7615 6.373779 CAGAAGCGATTCAAAACTTATGTGT 58.626 36.000 16.78 0.00 29.15 3.72
7253 7616 5.796935 CCAGAAGCGATTCAAAACTTATGTG 59.203 40.000 16.78 0.66 31.18 3.21
7254 7617 5.619981 GCCAGAAGCGATTCAAAACTTATGT 60.620 40.000 16.78 0.00 31.18 2.29
7255 7618 4.795278 GCCAGAAGCGATTCAAAACTTATG 59.205 41.667 16.78 2.15 32.54 1.90
7257 7620 3.190535 GGCCAGAAGCGATTCAAAACTTA 59.809 43.478 16.78 0.00 45.17 2.24
7270 7655 1.067915 TGCGTTATTTTGGCCAGAAGC 60.068 47.619 14.78 12.20 42.60 3.86
7274 7659 3.324993 ACATTTGCGTTATTTTGGCCAG 58.675 40.909 5.11 0.00 0.00 4.85
7279 7664 9.527566 CCAGATTTTTACATTTGCGTTATTTTG 57.472 29.630 0.00 0.00 0.00 2.44
7323 7708 9.308000 CAAGGCCTTATATATTTTGGTATGGAA 57.692 33.333 20.00 0.00 0.00 3.53
7338 7723 3.706600 ACAACCGAACAAGGCCTTATA 57.293 42.857 20.00 0.00 33.69 0.98
7340 7725 2.633967 TCTACAACCGAACAAGGCCTTA 59.366 45.455 20.00 0.00 33.69 2.69
7344 7729 2.165319 ACTCTACAACCGAACAAGGC 57.835 50.000 0.00 0.00 33.69 4.35
7345 7730 7.894376 TTAAATACTCTACAACCGAACAAGG 57.106 36.000 0.00 0.00 37.30 3.61
7346 7731 8.601476 GGATTAAATACTCTACAACCGAACAAG 58.399 37.037 0.00 0.00 0.00 3.16
7347 7732 8.316214 AGGATTAAATACTCTACAACCGAACAA 58.684 33.333 0.00 0.00 0.00 2.83
7348 7733 7.844009 AGGATTAAATACTCTACAACCGAACA 58.156 34.615 0.00 0.00 0.00 3.18
7349 7734 8.350238 GAGGATTAAATACTCTACAACCGAAC 57.650 38.462 0.00 0.00 37.27 3.95
7368 7753 8.435982 CCAGAGGATTAAATTCACTAGAGGATT 58.564 37.037 0.00 0.00 0.00 3.01
7369 7754 7.791766 TCCAGAGGATTAAATTCACTAGAGGAT 59.208 37.037 0.00 0.00 0.00 3.24
7370 7755 7.132805 TCCAGAGGATTAAATTCACTAGAGGA 58.867 38.462 0.00 0.00 0.00 3.71
7371 7756 7.366847 TCCAGAGGATTAAATTCACTAGAGG 57.633 40.000 0.00 0.00 0.00 3.69
7388 7773 3.882822 GGATCACCCAATCCTCCAGAGG 61.883 59.091 7.43 7.43 41.78 3.69
7389 7774 1.419387 GGATCACCCAATCCTCCAGAG 59.581 57.143 0.00 0.00 41.78 3.35
7390 7775 1.511613 GGATCACCCAATCCTCCAGA 58.488 55.000 0.00 0.00 41.78 3.86
7403 7788 0.831307 GGTGTAGGGTGAGGGATCAC 59.169 60.000 0.00 0.00 39.73 3.06
7404 7789 0.415830 TGGTGTAGGGTGAGGGATCA 59.584 55.000 0.00 0.00 0.00 2.92
7405 7790 1.580059 TTGGTGTAGGGTGAGGGATC 58.420 55.000 0.00 0.00 0.00 3.36
7406 7791 2.053747 TTTGGTGTAGGGTGAGGGAT 57.946 50.000 0.00 0.00 0.00 3.85
7407 7792 1.913419 GATTTGGTGTAGGGTGAGGGA 59.087 52.381 0.00 0.00 0.00 4.20
7408 7793 1.064685 GGATTTGGTGTAGGGTGAGGG 60.065 57.143 0.00 0.00 0.00 4.30
7409 7794 1.064685 GGGATTTGGTGTAGGGTGAGG 60.065 57.143 0.00 0.00 0.00 3.86
7410 7795 1.064685 GGGGATTTGGTGTAGGGTGAG 60.065 57.143 0.00 0.00 0.00 3.51
7411 7796 0.996583 GGGGATTTGGTGTAGGGTGA 59.003 55.000 0.00 0.00 0.00 4.02
7412 7797 0.999712 AGGGGATTTGGTGTAGGGTG 59.000 55.000 0.00 0.00 0.00 4.61
7413 7798 1.296002 GAGGGGATTTGGTGTAGGGT 58.704 55.000 0.00 0.00 0.00 4.34
7414 7799 0.180406 CGAGGGGATTTGGTGTAGGG 59.820 60.000 0.00 0.00 0.00 3.53
7415 7800 0.180406 CCGAGGGGATTTGGTGTAGG 59.820 60.000 0.00 0.00 34.06 3.18
7416 7801 3.780624 CCGAGGGGATTTGGTGTAG 57.219 57.895 0.00 0.00 34.06 2.74
7428 7813 2.704065 ACATGTATTTAGTCCCCGAGGG 59.296 50.000 0.00 0.00 46.11 4.30
7429 7814 3.386726 TGACATGTATTTAGTCCCCGAGG 59.613 47.826 0.00 0.00 0.00 4.63
7430 7815 4.665833 TGACATGTATTTAGTCCCCGAG 57.334 45.455 0.00 0.00 0.00 4.63
7431 7816 5.104693 ACAATGACATGTATTTAGTCCCCGA 60.105 40.000 0.00 0.00 0.00 5.14
7432 7817 5.007626 CACAATGACATGTATTTAGTCCCCG 59.992 44.000 0.00 0.00 30.84 5.73
7433 7818 6.119536 TCACAATGACATGTATTTAGTCCCC 58.880 40.000 0.00 0.00 30.84 4.81
7434 7819 7.624360 TTCACAATGACATGTATTTAGTCCC 57.376 36.000 0.00 0.00 30.84 4.46
7435 7820 9.722056 GAATTCACAATGACATGTATTTAGTCC 57.278 33.333 0.00 0.00 30.84 3.85
7436 7821 9.722056 GGAATTCACAATGACATGTATTTAGTC 57.278 33.333 7.93 0.00 30.84 2.59
7437 7822 9.241919 TGGAATTCACAATGACATGTATTTAGT 57.758 29.630 7.93 0.00 30.84 2.24
7442 7827 9.577222 TGATATGGAATTCACAATGACATGTAT 57.423 29.630 7.93 0.00 30.84 2.29
7443 7828 8.839343 GTGATATGGAATTCACAATGACATGTA 58.161 33.333 7.93 0.00 41.48 2.29
7444 7829 7.558807 AGTGATATGGAATTCACAATGACATGT 59.441 33.333 7.93 0.00 43.72 3.21
7445 7830 7.937649 AGTGATATGGAATTCACAATGACATG 58.062 34.615 7.93 0.00 43.72 3.21
7446 7831 8.529424 AAGTGATATGGAATTCACAATGACAT 57.471 30.769 7.93 2.35 43.72 3.06
7447 7832 7.943079 AAGTGATATGGAATTCACAATGACA 57.057 32.000 7.93 0.00 43.72 3.58
7453 7838 9.571816 TGCATAATAAGTGATATGGAATTCACA 57.428 29.630 7.93 3.48 43.72 3.58
7457 7842 8.896744 CGGATGCATAATAAGTGATATGGAATT 58.103 33.333 0.00 0.00 34.25 2.17
7458 7843 7.500227 CCGGATGCATAATAAGTGATATGGAAT 59.500 37.037 0.00 0.00 34.25 3.01
7459 7844 6.823182 CCGGATGCATAATAAGTGATATGGAA 59.177 38.462 0.00 0.00 34.25 3.53
7460 7845 6.070251 ACCGGATGCATAATAAGTGATATGGA 60.070 38.462 9.46 0.00 34.90 3.41
7461 7846 6.115446 ACCGGATGCATAATAAGTGATATGG 58.885 40.000 9.46 0.00 31.58 2.74
7462 7847 7.615582 AACCGGATGCATAATAAGTGATATG 57.384 36.000 9.46 0.00 33.58 1.78
7463 7848 9.905713 ATTAACCGGATGCATAATAAGTGATAT 57.094 29.630 9.46 0.00 0.00 1.63
7464 7849 9.378551 GATTAACCGGATGCATAATAAGTGATA 57.621 33.333 9.46 0.00 0.00 2.15
7465 7850 7.336931 GGATTAACCGGATGCATAATAAGTGAT 59.663 37.037 9.46 0.00 0.00 3.06
7466 7851 6.653320 GGATTAACCGGATGCATAATAAGTGA 59.347 38.462 9.46 0.00 0.00 3.41
7467 7852 6.655003 AGGATTAACCGGATGCATAATAAGTG 59.345 38.462 9.46 0.00 44.74 3.16
7468 7853 6.779860 AGGATTAACCGGATGCATAATAAGT 58.220 36.000 9.46 0.00 44.74 2.24
7469 7854 7.106239 AGAGGATTAACCGGATGCATAATAAG 58.894 38.462 9.46 0.00 44.74 1.73
7470 7855 7.016153 AGAGGATTAACCGGATGCATAATAA 57.984 36.000 9.46 0.00 44.74 1.40
7471 7856 6.620877 AGAGGATTAACCGGATGCATAATA 57.379 37.500 9.46 0.00 44.74 0.98
7472 7857 5.505181 AGAGGATTAACCGGATGCATAAT 57.495 39.130 9.46 4.73 44.74 1.28
7473 7858 4.974645 AGAGGATTAACCGGATGCATAA 57.025 40.909 9.46 0.00 44.74 1.90
7474 7859 4.466370 CCTAGAGGATTAACCGGATGCATA 59.534 45.833 9.46 0.00 44.74 3.14
7475 7860 3.261897 CCTAGAGGATTAACCGGATGCAT 59.738 47.826 9.46 0.00 44.74 3.96
7476 7861 2.632996 CCTAGAGGATTAACCGGATGCA 59.367 50.000 9.46 0.00 44.74 3.96
7477 7862 2.613223 GCCTAGAGGATTAACCGGATGC 60.613 54.545 9.46 0.00 44.74 3.91
7478 7863 2.028020 GGCCTAGAGGATTAACCGGATG 60.028 54.545 9.46 0.00 44.74 3.51
7479 7864 2.258109 GGCCTAGAGGATTAACCGGAT 58.742 52.381 9.46 0.00 44.74 4.18
7480 7865 1.713297 GGCCTAGAGGATTAACCGGA 58.287 55.000 9.46 0.00 44.74 5.14
7481 7866 0.317479 CGGCCTAGAGGATTAACCGG 59.683 60.000 0.00 0.00 44.74 5.28
7482 7867 0.319641 GCGGCCTAGAGGATTAACCG 60.320 60.000 0.00 3.53 44.74 4.44
7483 7868 0.035036 GGCGGCCTAGAGGATTAACC 59.965 60.000 12.87 0.00 37.39 2.85
7484 7869 0.756903 TGGCGGCCTAGAGGATTAAC 59.243 55.000 21.46 0.00 37.39 2.01
7485 7870 0.756903 GTGGCGGCCTAGAGGATTAA 59.243 55.000 21.46 0.00 37.39 1.40
7486 7871 1.119574 GGTGGCGGCCTAGAGGATTA 61.120 60.000 21.46 0.00 37.39 1.75
7487 7872 2.444256 GGTGGCGGCCTAGAGGATT 61.444 63.158 21.46 0.00 37.39 3.01
7488 7873 2.844839 GGTGGCGGCCTAGAGGAT 60.845 66.667 21.46 0.00 37.39 3.24
7489 7874 4.392166 TGGTGGCGGCCTAGAGGA 62.392 66.667 21.46 0.00 37.39 3.71
7490 7875 4.162690 GTGGTGGCGGCCTAGAGG 62.163 72.222 21.46 0.00 38.53 3.69
7491 7876 4.162690 GGTGGTGGCGGCCTAGAG 62.163 72.222 21.46 0.00 0.00 2.43
7493 7878 4.778143 GTGGTGGTGGCGGCCTAG 62.778 72.222 21.46 0.00 0.00 3.02
7500 7885 4.722700 AGGCATCGTGGTGGTGGC 62.723 66.667 0.00 0.00 38.56 5.01
7501 7886 2.034066 AAGGCATCGTGGTGGTGG 59.966 61.111 0.00 0.00 0.00 4.61
7502 7887 2.981560 GCAAGGCATCGTGGTGGTG 61.982 63.158 0.00 0.00 0.00 4.17
7503 7888 2.672996 GCAAGGCATCGTGGTGGT 60.673 61.111 0.00 0.00 0.00 4.16
7504 7889 2.360350 AGCAAGGCATCGTGGTGG 60.360 61.111 0.00 0.00 32.30 4.61
7505 7890 2.872557 CAGCAAGGCATCGTGGTG 59.127 61.111 0.00 0.00 42.34 4.17
7506 7891 0.036164 TAACAGCAAGGCATCGTGGT 59.964 50.000 0.00 0.00 33.65 4.16
7507 7892 1.164411 TTAACAGCAAGGCATCGTGG 58.836 50.000 0.00 0.00 0.00 4.94
7508 7893 3.373748 TGTATTAACAGCAAGGCATCGTG 59.626 43.478 0.00 0.00 0.00 4.35
7509 7894 3.605634 TGTATTAACAGCAAGGCATCGT 58.394 40.909 0.00 0.00 0.00 3.73
7510 7895 4.201208 CTGTATTAACAGCAAGGCATCG 57.799 45.455 0.00 0.00 46.28 3.84
7521 7906 7.306213 CACTCTTCGTTCTCTCTGTATTAACA 58.694 38.462 0.00 0.00 0.00 2.41
7522 7907 7.728580 CACTCTTCGTTCTCTCTGTATTAAC 57.271 40.000 0.00 0.00 0.00 2.01



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.