Multiple sequence alignment - TraesCS2B01G373400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G373400 chr2B 100.000 4404 0 0 1 4404 532077818 532082221 0.000000e+00 8133.0
1 TraesCS2B01G373400 chr2B 97.222 72 2 0 1810 1881 532079698 532079627 5.980000e-24 122.0
2 TraesCS2B01G373400 chr2B 96.721 61 0 2 1816 1874 243083764 243083824 2.800000e-17 100.0
3 TraesCS2B01G373400 chr2B 93.750 64 4 0 1817 1880 779049946 779050009 3.630000e-16 97.1
4 TraesCS2B01G373400 chr2B 92.188 64 5 0 1811 1874 779050009 779049946 1.690000e-14 91.6
5 TraesCS2B01G373400 chr2B 91.304 69 1 3 1817 1882 243083824 243083758 6.070000e-14 89.8
6 TraesCS2B01G373400 chr2B 93.548 62 1 1 1816 1874 483948534 483948473 6.070000e-14 89.8
7 TraesCS2B01G373400 chr2B 86.842 76 9 1 1806 1881 651357116 651357042 2.820000e-12 84.2
8 TraesCS2B01G373400 chr2A 92.341 1384 66 17 462 1811 597516227 597514850 0.000000e+00 1932.0
9 TraesCS2B01G373400 chr2A 89.101 1202 88 15 2422 3596 597514181 597512996 0.000000e+00 1454.0
10 TraesCS2B01G373400 chr2A 94.000 550 17 2 1874 2423 597514849 597514316 0.000000e+00 819.0
11 TraesCS2B01G373400 chr2A 92.090 354 16 6 4060 4403 597512462 597512111 5.120000e-134 488.0
12 TraesCS2B01G373400 chr2A 84.029 407 37 9 1 388 597516658 597516261 2.500000e-97 366.0
13 TraesCS2B01G373400 chr2A 100.000 36 0 0 2373 2408 597514274 597514239 2.840000e-07 67.6
14 TraesCS2B01G373400 chr2D 92.525 990 58 12 2609 3596 451959045 451960020 0.000000e+00 1404.0
15 TraesCS2B01G373400 chr2D 93.348 932 35 10 501 1420 451956852 451957768 0.000000e+00 1352.0
16 TraesCS2B01G373400 chr2D 87.146 1237 83 22 2458 3668 451927597 451928783 0.000000e+00 1334.0
17 TraesCS2B01G373400 chr2D 89.873 553 27 10 1873 2409 451958112 451958651 0.000000e+00 684.0
18 TraesCS2B01G373400 chr2D 89.358 545 45 4 1875 2409 451926945 451927486 0.000000e+00 673.0
19 TraesCS2B01G373400 chr2D 93.768 353 21 1 1466 1818 451957764 451958115 3.020000e-146 529.0
20 TraesCS2B01G373400 chr2D 93.931 346 20 1 1466 1811 451926607 451926951 5.050000e-144 521.0
21 TraesCS2B01G373400 chr2D 95.131 267 12 1 1155 1420 451926345 451926611 1.890000e-113 420.0
22 TraesCS2B01G373400 chr2D 91.781 219 8 5 4191 4404 451960835 451961048 3.330000e-76 296.0
23 TraesCS2B01G373400 chr2D 83.234 334 36 11 3705 4036 451960219 451960534 5.570000e-74 289.0
24 TraesCS2B01G373400 chr2D 82.891 339 21 20 820 1158 451923961 451924262 2.020000e-68 270.0
25 TraesCS2B01G373400 chr2D 89.503 181 17 1 2423 2603 451958709 451958887 1.230000e-55 228.0
26 TraesCS2B01G373400 chr2D 92.188 64 5 0 1814 1877 595165485 595165422 1.690000e-14 91.6
27 TraesCS2B01G373400 chr2D 90.909 66 2 4 1814 1877 595165422 595165485 7.850000e-13 86.1
28 TraesCS2B01G373400 chr2D 94.340 53 3 0 630 682 451693325 451693377 1.020000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G373400 chr2B 532077818 532082221 4403 False 8133.000000 8133 100.000000 1 4404 1 chr2B.!!$F2 4403
1 TraesCS2B01G373400 chr2A 597512111 597516658 4547 True 854.433333 1932 91.926833 1 4403 6 chr2A.!!$R1 4402
2 TraesCS2B01G373400 chr2D 451956852 451961048 4196 False 683.142857 1404 90.576000 501 4404 7 chr2D.!!$F4 3903
3 TraesCS2B01G373400 chr2D 451923961 451928783 4822 False 643.600000 1334 89.691400 820 3668 5 chr2D.!!$F3 2848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
594 615 0.032815 TCAACATCACCGTCGCTCAA 59.967 50.000 0.00 0.0 0.00 3.02 F
1472 3615 0.179076 CACACACACAGGCAGACTCA 60.179 55.000 0.00 0.0 0.00 3.41 F
2434 4744 0.323360 TGCCTGGCCACTTTGATACC 60.323 55.000 17.53 0.0 0.00 2.73 F
3211 5691 1.222936 CCTTCCTGCGGAGATGCTT 59.777 57.895 5.10 0.0 35.36 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2409 4579 0.178953 AAAGTGGCCAGGCATCTGTT 60.179 50.0 15.19 5.48 39.31 3.16 R
3166 5646 0.035458 AGTTCTGGTCGCTTTGAGGG 59.965 55.0 0.00 0.00 0.00 4.30 R
3256 5736 0.111266 CAACGACGGAAAACTGAGCG 60.111 55.0 0.00 0.00 0.00 5.03 R
4020 6612 0.523072 CGGGTCAATGAACTTGGCAG 59.477 55.0 0.00 0.00 41.44 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.332926 TGAGTCTTCTTCTCATGTTGAAATAGC 59.667 37.037 0.00 0.00 37.07 2.97
36 37 4.200838 TCTCATGTTGAAATAGCGTGGA 57.799 40.909 0.00 0.00 0.00 4.02
40 41 2.147958 TGTTGAAATAGCGTGGACCAC 58.852 47.619 15.13 15.13 0.00 4.16
48 49 2.032528 CGTGGACCACATGCACCT 59.967 61.111 24.18 0.00 46.50 4.00
49 50 1.600636 CGTGGACCACATGCACCTT 60.601 57.895 24.18 0.00 46.50 3.50
50 51 1.577328 CGTGGACCACATGCACCTTC 61.577 60.000 24.18 0.00 46.50 3.46
63 64 3.219281 TGCACCTTCCCTTCTTGTTTAC 58.781 45.455 0.00 0.00 0.00 2.01
141 160 2.503895 AGAGGGGTTTGATGCTTGAG 57.496 50.000 0.00 0.00 0.00 3.02
166 185 5.909477 CCATTGCTATGGTCATGTCATTTT 58.091 37.500 17.91 0.00 45.34 1.82
198 217 6.107343 AGATCTTGACTGTGATGACATCAAG 58.893 40.000 19.57 20.60 42.16 3.02
200 219 5.233225 TCTTGACTGTGATGACATCAAGAC 58.767 41.667 23.01 17.13 43.12 3.01
205 224 7.160726 TGACTGTGATGACATCAAGACAAATA 58.839 34.615 19.57 0.15 41.69 1.40
208 227 8.456471 ACTGTGATGACATCAAGACAAATAATG 58.544 33.333 19.57 4.23 41.69 1.90
223 242 7.385752 AGACAAATAATGTGACTTTTGCAATGG 59.614 33.333 0.00 0.00 44.12 3.16
238 257 1.879380 CAATGGTTCTGAGCACCGAAA 59.121 47.619 0.00 0.00 37.07 3.46
250 269 1.028905 CACCGAAACCCTCTTTGCAA 58.971 50.000 0.00 0.00 0.00 4.08
254 273 2.543653 CCGAAACCCTCTTTGCAACAAG 60.544 50.000 0.00 0.00 0.00 3.16
262 281 1.133325 TCTTTGCAACAAGGGGCCTTA 60.133 47.619 0.84 0.00 34.50 2.69
269 288 3.897239 CAACAAGGGGCCTTACATATCA 58.103 45.455 0.84 0.00 34.50 2.15
275 294 5.605540 AGGGGCCTTACATATCATTCAAT 57.394 39.130 0.84 0.00 0.00 2.57
276 295 5.969086 AGGGGCCTTACATATCATTCAATT 58.031 37.500 0.84 0.00 0.00 2.32
280 299 6.041979 GGGCCTTACATATCATTCAATTTGGT 59.958 38.462 0.84 0.00 0.00 3.67
317 336 2.877335 ACCGTATTCACTTTCTCGAGC 58.123 47.619 7.81 0.00 0.00 5.03
320 339 3.448686 CGTATTCACTTTCTCGAGCCAT 58.551 45.455 7.81 0.00 0.00 4.40
338 357 7.990886 TCGAGCCATGTAAATAAGAAGGTTAAT 59.009 33.333 0.00 0.00 0.00 1.40
388 408 6.833608 TTTATCGTGAGAGAAAGACTCGCCT 61.834 44.000 0.00 0.00 45.33 5.52
396 416 4.303282 GAGAAAGACTCGCCTTGATATCC 58.697 47.826 0.00 0.00 35.84 2.59
397 417 3.706594 AGAAAGACTCGCCTTGATATCCA 59.293 43.478 0.00 0.00 0.00 3.41
398 418 4.162320 AGAAAGACTCGCCTTGATATCCAA 59.838 41.667 0.00 0.00 0.00 3.53
399 419 4.696479 AAGACTCGCCTTGATATCCAAT 57.304 40.909 0.00 0.00 33.68 3.16
400 420 4.264460 AGACTCGCCTTGATATCCAATC 57.736 45.455 0.00 0.00 33.68 2.67
401 421 3.900601 AGACTCGCCTTGATATCCAATCT 59.099 43.478 0.00 0.00 33.68 2.40
402 422 4.346418 AGACTCGCCTTGATATCCAATCTT 59.654 41.667 0.00 0.00 33.68 2.40
403 423 5.540337 AGACTCGCCTTGATATCCAATCTTA 59.460 40.000 0.00 0.00 33.68 2.10
405 425 5.070446 ACTCGCCTTGATATCCAATCTTACA 59.930 40.000 0.00 0.00 33.68 2.41
406 426 5.297547 TCGCCTTGATATCCAATCTTACAC 58.702 41.667 0.00 0.00 33.68 2.90
407 427 4.150627 CGCCTTGATATCCAATCTTACACG 59.849 45.833 0.00 0.00 33.68 4.49
409 429 4.452455 CCTTGATATCCAATCTTACACGGC 59.548 45.833 0.00 0.00 33.68 5.68
410 430 4.681074 TGATATCCAATCTTACACGGCA 57.319 40.909 0.00 0.00 0.00 5.69
411 431 4.377021 TGATATCCAATCTTACACGGCAC 58.623 43.478 0.00 0.00 0.00 5.01
430 450 3.085443 ACGCGAGTCATCATCCTAAAG 57.915 47.619 15.93 0.00 44.19 1.85
431 451 1.789464 CGCGAGTCATCATCCTAAAGC 59.211 52.381 0.00 0.00 0.00 3.51
432 452 2.544694 CGCGAGTCATCATCCTAAAGCT 60.545 50.000 0.00 0.00 0.00 3.74
433 453 3.304726 CGCGAGTCATCATCCTAAAGCTA 60.305 47.826 0.00 0.00 0.00 3.32
434 454 4.617067 CGCGAGTCATCATCCTAAAGCTAT 60.617 45.833 0.00 0.00 0.00 2.97
435 455 4.624882 GCGAGTCATCATCCTAAAGCTATG 59.375 45.833 0.00 0.00 0.00 2.23
436 456 4.624882 CGAGTCATCATCCTAAAGCTATGC 59.375 45.833 0.00 0.00 0.00 3.14
437 457 5.545588 GAGTCATCATCCTAAAGCTATGCA 58.454 41.667 0.00 0.00 0.00 3.96
438 458 6.124316 AGTCATCATCCTAAAGCTATGCAT 57.876 37.500 3.79 3.79 0.00 3.96
439 459 6.540995 AGTCATCATCCTAAAGCTATGCATT 58.459 36.000 3.54 0.00 0.00 3.56
440 460 6.430308 AGTCATCATCCTAAAGCTATGCATTG 59.570 38.462 3.54 3.55 0.00 2.82
441 461 5.708697 TCATCATCCTAAAGCTATGCATTGG 59.291 40.000 3.54 0.00 0.00 3.16
442 462 5.052693 TCATCCTAAAGCTATGCATTGGT 57.947 39.130 3.54 5.59 0.00 3.67
443 463 5.065914 TCATCCTAAAGCTATGCATTGGTC 58.934 41.667 13.09 0.00 0.00 4.02
444 464 4.502105 TCCTAAAGCTATGCATTGGTCA 57.498 40.909 13.09 4.25 0.00 4.02
445 465 5.052693 TCCTAAAGCTATGCATTGGTCAT 57.947 39.130 13.09 8.24 0.00 3.06
446 466 6.186420 TCCTAAAGCTATGCATTGGTCATA 57.814 37.500 13.09 8.87 0.00 2.15
447 467 5.997746 TCCTAAAGCTATGCATTGGTCATAC 59.002 40.000 13.09 0.00 0.00 2.39
448 468 5.182001 CCTAAAGCTATGCATTGGTCATACC 59.818 44.000 13.09 0.00 39.22 2.73
449 469 3.146104 AGCTATGCATTGGTCATACCC 57.854 47.619 3.54 0.00 37.50 3.69
450 470 2.713167 AGCTATGCATTGGTCATACCCT 59.287 45.455 3.54 0.00 37.50 4.34
451 471 3.077359 GCTATGCATTGGTCATACCCTC 58.923 50.000 3.54 0.00 37.50 4.30
452 472 3.496692 GCTATGCATTGGTCATACCCTCA 60.497 47.826 3.54 0.00 37.50 3.86
453 473 2.418368 TGCATTGGTCATACCCTCAC 57.582 50.000 0.00 0.00 37.50 3.51
454 474 1.299541 GCATTGGTCATACCCTCACG 58.700 55.000 0.00 0.00 37.50 4.35
455 475 1.134521 GCATTGGTCATACCCTCACGA 60.135 52.381 0.00 0.00 37.50 4.35
456 476 2.826428 CATTGGTCATACCCTCACGAG 58.174 52.381 0.00 0.00 37.50 4.18
457 477 1.933021 TTGGTCATACCCTCACGAGT 58.067 50.000 0.00 0.00 37.50 4.18
460 480 1.134560 GGTCATACCCTCACGAGTCAC 59.865 57.143 0.00 0.00 30.04 3.67
478 498 1.825474 CACGAGGGTGTTCTAGTGGAT 59.175 52.381 0.00 0.00 39.38 3.41
486 506 4.399303 GGGTGTTCTAGTGGATCCATTTTG 59.601 45.833 19.62 10.65 0.00 2.44
579 600 1.537202 AGCGAGTGAATGCCTTTCAAC 59.463 47.619 1.15 0.00 45.71 3.18
592 613 1.126846 CTTTCAACATCACCGTCGCTC 59.873 52.381 0.00 0.00 0.00 5.03
594 615 0.032815 TCAACATCACCGTCGCTCAA 59.967 50.000 0.00 0.00 0.00 3.02
595 616 1.078709 CAACATCACCGTCGCTCAAT 58.921 50.000 0.00 0.00 0.00 2.57
629 650 2.787473 TCAGAAAATCATCACGGCCT 57.213 45.000 0.00 0.00 0.00 5.19
666 693 2.324541 CTTCCTCTCGGAGATTCCCAT 58.675 52.381 8.39 0.00 41.25 4.00
698 725 3.406361 CGGCGTCTGTGTCTGCAC 61.406 66.667 0.00 0.00 45.44 4.57
709 736 0.890542 TGTCTGCACAATGCCCTGAC 60.891 55.000 0.00 5.30 44.23 3.51
717 744 2.095567 CACAATGCCCTGACTTTTCGAG 60.096 50.000 0.00 0.00 0.00 4.04
723 750 1.070134 CCCTGACTTTTCGAGGACACA 59.930 52.381 0.00 0.00 0.00 3.72
738 765 1.859080 GACACAAGCGTTTCTTCTCGT 59.141 47.619 0.00 0.00 31.27 4.18
753 780 8.762426 GTTTCTTCTCGTTAGTGTAGAAACAAT 58.238 33.333 18.61 0.00 45.23 2.71
758 785 5.672051 TCGTTAGTGTAGAAACAATTTGCG 58.328 37.500 0.00 0.00 37.36 4.85
760 787 5.558888 CGTTAGTGTAGAAACAATTTGCGAC 59.441 40.000 0.00 0.00 37.36 5.19
789 820 1.268335 CGAAGTCAAACCAAACACCGG 60.268 52.381 0.00 0.00 0.00 5.28
792 823 0.666374 GTCAAACCAAACACCGGGAG 59.334 55.000 6.32 0.00 0.00 4.30
1389 3520 2.169832 TCCTTCTCGCAGGTGAAAAG 57.830 50.000 0.00 0.00 35.15 2.27
1390 3521 1.691976 TCCTTCTCGCAGGTGAAAAGA 59.308 47.619 0.00 0.00 35.15 2.52
1429 3562 0.392327 TCCACCACACACACACACAG 60.392 55.000 0.00 0.00 0.00 3.66
1440 3579 1.270571 ACACACACAGACACACACACA 60.271 47.619 0.00 0.00 0.00 3.72
1441 3580 1.128507 CACACACAGACACACACACAC 59.871 52.381 0.00 0.00 0.00 3.82
1472 3615 0.179076 CACACACACAGGCAGACTCA 60.179 55.000 0.00 0.00 0.00 3.41
1485 3628 4.458295 AGGCAGACTCAACATCATTTTCAG 59.542 41.667 0.00 0.00 0.00 3.02
1492 3635 3.006752 TCAACATCATTTTCAGGGTTGGC 59.993 43.478 0.00 0.00 36.99 4.52
1593 3736 4.171103 GGGCTCATACCGGCGGTT 62.171 66.667 38.73 21.61 37.09 4.44
1811 3954 3.676324 CGTTGGGTCTCCTGTTAAGCTAG 60.676 52.174 0.00 0.00 0.00 3.42
1814 3957 2.436173 GGGTCTCCTGTTAAGCTAGCAT 59.564 50.000 18.83 7.77 0.00 3.79
1815 3958 3.641906 GGGTCTCCTGTTAAGCTAGCATA 59.358 47.826 18.83 6.52 0.00 3.14
1817 3960 5.480772 GGGTCTCCTGTTAAGCTAGCATATA 59.519 44.000 18.83 4.10 0.00 0.86
1818 3961 6.391537 GGTCTCCTGTTAAGCTAGCATATAC 58.608 44.000 18.83 10.64 0.00 1.47
1820 3963 7.309920 GTCTCCTGTTAAGCTAGCATATACTC 58.690 42.308 18.83 1.20 0.00 2.59
1822 3965 5.480772 TCCTGTTAAGCTAGCATATACTCCC 59.519 44.000 18.83 0.00 0.00 4.30
1823 3966 5.482175 CCTGTTAAGCTAGCATATACTCCCT 59.518 44.000 18.83 0.00 0.00 4.20
1824 3967 6.350612 CCTGTTAAGCTAGCATATACTCCCTC 60.351 46.154 18.83 0.00 0.00 4.30
1825 3968 5.480772 TGTTAAGCTAGCATATACTCCCTCC 59.519 44.000 18.83 0.00 0.00 4.30
1826 3969 2.729194 AGCTAGCATATACTCCCTCCG 58.271 52.381 18.83 0.00 0.00 4.63
1827 3970 2.041891 AGCTAGCATATACTCCCTCCGT 59.958 50.000 18.83 0.00 0.00 4.69
1828 3971 2.826725 GCTAGCATATACTCCCTCCGTT 59.173 50.000 10.63 0.00 0.00 4.44
1829 3972 3.119424 GCTAGCATATACTCCCTCCGTTC 60.119 52.174 10.63 0.00 0.00 3.95
1830 3973 2.249139 AGCATATACTCCCTCCGTTCC 58.751 52.381 0.00 0.00 0.00 3.62
1831 3974 1.968493 GCATATACTCCCTCCGTTCCA 59.032 52.381 0.00 0.00 0.00 3.53
1832 3975 2.367567 GCATATACTCCCTCCGTTCCAA 59.632 50.000 0.00 0.00 0.00 3.53
1833 3976 3.181458 GCATATACTCCCTCCGTTCCAAA 60.181 47.826 0.00 0.00 0.00 3.28
1834 3977 4.685030 GCATATACTCCCTCCGTTCCAAAA 60.685 45.833 0.00 0.00 0.00 2.44
1835 3978 5.621193 CATATACTCCCTCCGTTCCAAAAT 58.379 41.667 0.00 0.00 0.00 1.82
1836 3979 6.743208 GCATATACTCCCTCCGTTCCAAAATA 60.743 42.308 0.00 0.00 0.00 1.40
1837 3980 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1838 3981 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1839 3982 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1840 3983 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1841 3984 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1842 3985 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1843 3986 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
1844 3987 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
1845 3988 5.395768 CCTCCGTTCCAAAATAGATGACTCT 60.396 44.000 0.00 0.00 35.39 3.24
1846 3989 6.183360 CCTCCGTTCCAAAATAGATGACTCTA 60.183 42.308 0.00 0.00 38.34 2.43
1847 3990 6.806751 TCCGTTCCAAAATAGATGACTCTAG 58.193 40.000 0.00 0.00 37.41 2.43
1848 3991 6.380274 TCCGTTCCAAAATAGATGACTCTAGT 59.620 38.462 0.00 0.00 37.41 2.57
1849 3992 6.697892 CCGTTCCAAAATAGATGACTCTAGTC 59.302 42.308 3.08 3.08 44.97 2.59
1864 4007 7.687005 GACTCTAGTCATCTATTTTGGAACG 57.313 40.000 5.24 0.00 44.18 3.95
1865 4008 6.574350 ACTCTAGTCATCTATTTTGGAACGG 58.426 40.000 0.00 0.00 0.00 4.44
1866 4009 6.380274 ACTCTAGTCATCTATTTTGGAACGGA 59.620 38.462 0.00 0.00 0.00 4.69
1867 4010 6.806751 TCTAGTCATCTATTTTGGAACGGAG 58.193 40.000 0.00 0.00 0.00 4.63
1868 4011 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
1869 4012 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1870 4013 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
1871 4014 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1906 4049 1.228094 TTGTTCCTCACATGCCGCA 60.228 52.632 0.00 0.00 34.43 5.69
1907 4050 1.236616 TTGTTCCTCACATGCCGCAG 61.237 55.000 0.00 0.00 34.43 5.18
2018 4161 2.354259 GTGTTCTCAGCTGGGATTCTG 58.646 52.381 19.11 0.00 0.00 3.02
2357 4527 9.258826 CATCATCACAGACTAGGAATCTAAAAG 57.741 37.037 0.00 0.00 0.00 2.27
2409 4579 2.969821 ATAGGCAGGTGGTGTTTCAA 57.030 45.000 0.00 0.00 0.00 2.69
2432 4742 1.565759 AGATGCCTGGCCACTTTGATA 59.434 47.619 17.53 0.00 0.00 2.15
2434 4744 0.323360 TGCCTGGCCACTTTGATACC 60.323 55.000 17.53 0.00 0.00 2.73
2444 4754 6.127479 TGGCCACTTTGATACCACATAATTTC 60.127 38.462 0.00 0.00 0.00 2.17
2491 4815 5.995446 TGGACATGGTATTTGTGCACTATA 58.005 37.500 19.41 12.60 39.99 1.31
2492 4816 6.600388 TGGACATGGTATTTGTGCACTATAT 58.400 36.000 19.41 10.80 39.99 0.86
2527 4851 9.709495 AGCTAAAGCAATGTAAATTCAAATTCA 57.291 25.926 4.54 0.00 45.16 2.57
2551 4877 5.994250 ACTAATAAGCTTCTGAAGATGGCA 58.006 37.500 21.06 4.64 0.00 4.92
2586 4912 6.024552 TCAAATGTTCCAAAATAGCAGTCC 57.975 37.500 0.00 0.00 0.00 3.85
2606 5084 4.640647 GTCCCAATCAGATCCTAACCAAAC 59.359 45.833 0.00 0.00 0.00 2.93
2632 5112 4.452455 GCATGGATGTGCTATAGGTTACAC 59.548 45.833 1.04 1.79 41.82 2.90
2651 5131 9.817809 GGTTACACTGAGATTTATGATACTCAA 57.182 33.333 0.00 0.00 38.60 3.02
2660 5140 8.523915 AGATTTATGATACTCAATTGTTGCCA 57.476 30.769 5.13 0.00 0.00 4.92
2669 5149 5.351458 ACTCAATTGTTGCCAAAGAAACTC 58.649 37.500 5.13 0.00 33.44 3.01
2671 5151 5.916318 TCAATTGTTGCCAAAGAAACTCAT 58.084 33.333 5.13 0.00 33.44 2.90
2707 5187 7.576666 GCATTGTCACAGGAATTTATTGGTGTA 60.577 37.037 0.00 0.00 0.00 2.90
3013 5493 3.528532 CTTCTATGCACTGCTCATGTCA 58.471 45.455 1.98 0.00 0.00 3.58
3109 5589 1.804748 GAGTTCAGTAACCTTTGGGCG 59.195 52.381 0.00 0.00 36.15 6.13
3154 5634 3.099438 CTGCTTCCGCTGATGCTG 58.901 61.111 15.30 11.64 41.10 4.41
3166 5646 2.667724 GCTGATGCTGCTGTTTCTTGTC 60.668 50.000 0.00 0.00 36.03 3.18
3211 5691 1.222936 CCTTCCTGCGGAGATGCTT 59.777 57.895 5.10 0.00 35.36 3.91
3224 5704 2.263077 AGATGCTTCACGATGACGAAC 58.737 47.619 2.07 0.00 42.66 3.95
3256 5736 1.895707 CAAGGATGGATCGGGCAGC 60.896 63.158 0.00 0.00 0.00 5.25
3272 5752 2.022129 AGCGCTCAGTTTTCCGTCG 61.022 57.895 2.64 0.00 0.00 5.12
3354 5834 5.716703 TCAAAGTGACTGATGATGTAGGAGA 59.283 40.000 0.00 0.00 0.00 3.71
3355 5835 6.382282 TCAAAGTGACTGATGATGTAGGAGAT 59.618 38.462 0.00 0.00 0.00 2.75
3370 5850 5.476254 TGTAGGAGATGATGTAGAGCTGATG 59.524 44.000 0.00 0.00 0.00 3.07
3387 5867 3.076621 TGATGCCACTGATGAACAAGAC 58.923 45.455 0.00 0.00 0.00 3.01
3388 5868 2.936919 TGCCACTGATGAACAAGACT 57.063 45.000 0.00 0.00 0.00 3.24
3448 5928 3.576078 TTCATGATCCATTTACGCCCT 57.424 42.857 0.00 0.00 0.00 5.19
3450 5930 1.881973 CATGATCCATTTACGCCCTGG 59.118 52.381 0.00 0.00 0.00 4.45
3466 5946 2.368875 CCCTGGCCTTCTGATTATACGT 59.631 50.000 3.32 0.00 0.00 3.57
3479 5959 5.276270 TGATTATACGTTTCGGTAGCTGTC 58.724 41.667 0.00 0.00 0.00 3.51
3480 5960 4.970662 TTATACGTTTCGGTAGCTGTCT 57.029 40.909 0.00 0.00 0.00 3.41
3481 5961 6.260714 TGATTATACGTTTCGGTAGCTGTCTA 59.739 38.462 0.00 0.00 0.00 2.59
3482 5962 2.915738 ACGTTTCGGTAGCTGTCTAG 57.084 50.000 0.00 0.00 0.00 2.43
3506 5986 7.873739 GCAAGATAATGTTTGCTACAAAAGT 57.126 32.000 2.22 0.00 44.70 2.66
3555 6043 6.990349 TGTATTTTGTATAGGTAGAAGCAGCC 59.010 38.462 0.00 0.00 0.00 4.85
3660 6179 5.885230 TCATGTATTGAGCAGTTCCTTTG 57.115 39.130 0.00 0.00 0.00 2.77
3666 6187 3.439857 TGAGCAGTTCCTTTGCCTATT 57.560 42.857 0.00 0.00 42.48 1.73
3669 6190 3.758554 GAGCAGTTCCTTTGCCTATTCAA 59.241 43.478 0.00 0.00 42.48 2.69
3678 6199 6.924111 TCCTTTGCCTATTCAATGTTTCTTC 58.076 36.000 0.00 0.00 0.00 2.87
3681 6202 4.023291 TGCCTATTCAATGTTTCTTCCCC 58.977 43.478 0.00 0.00 0.00 4.81
3682 6203 4.023291 GCCTATTCAATGTTTCTTCCCCA 58.977 43.478 0.00 0.00 0.00 4.96
3683 6204 4.651045 GCCTATTCAATGTTTCTTCCCCAT 59.349 41.667 0.00 0.00 0.00 4.00
3686 6207 5.682234 ATTCAATGTTTCTTCCCCATTCC 57.318 39.130 0.00 0.00 0.00 3.01
3720 6305 7.558444 TGAGTTAAAACCTGTAACTTTCACCAT 59.442 33.333 0.00 0.00 40.93 3.55
3766 6351 7.358352 GGCGTTTTGAGAATATTGTTCTTTGTG 60.358 37.037 0.00 0.00 0.00 3.33
3800 6385 5.415389 TGCTAGTATTTCAGTACACGTGGTA 59.585 40.000 21.57 7.12 0.00 3.25
3816 6405 6.127786 ACACGTGGTACTCTATTCTAAACTCC 60.128 42.308 21.57 0.00 0.00 3.85
3819 6408 5.659971 GTGGTACTCTATTCTAAACTCCCCA 59.340 44.000 0.00 0.00 0.00 4.96
3836 6425 2.532715 ACTCCCCAGGGCATGTGT 60.533 61.111 0.00 0.00 34.68 3.72
3851 6441 3.798548 GCATGTGTTTTACCAACCCTGTG 60.799 47.826 0.00 0.00 0.00 3.66
3873 6463 0.671472 TCACAGGCACGAGCAGAATG 60.671 55.000 7.26 2.34 44.61 2.67
3875 6465 0.608130 ACAGGCACGAGCAGAATGTA 59.392 50.000 7.26 0.00 44.61 2.29
3876 6466 1.001974 ACAGGCACGAGCAGAATGTAA 59.998 47.619 7.26 0.00 44.61 2.41
3893 6483 6.264518 AGAATGTAATGGTGAAAACCGTCTTT 59.735 34.615 0.00 0.00 0.00 2.52
3915 6507 7.508977 TCTTTTCTTTACCTCATTTTGGATGGT 59.491 33.333 0.00 0.00 35.05 3.55
3928 6520 1.548719 TGGATGGTAGAGTTGACGGTG 59.451 52.381 0.00 0.00 0.00 4.94
3934 6526 3.872771 TGGTAGAGTTGACGGTGAAAAAC 59.127 43.478 0.00 0.00 0.00 2.43
3952 6544 5.401531 AAAACCGAAGTACAGATCTAGCA 57.598 39.130 0.00 0.00 0.00 3.49
3965 6557 6.705302 ACAGATCTAGCATATGTTATGTGGG 58.295 40.000 4.29 0.00 0.00 4.61
3967 6559 6.815641 CAGATCTAGCATATGTTATGTGGGAC 59.184 42.308 4.29 0.00 0.00 4.46
3975 6567 6.183360 GCATATGTTATGTGGGACAATTGACA 60.183 38.462 13.59 6.29 44.16 3.58
3984 6576 4.864247 GTGGGACAATTGACATTGCATAAC 59.136 41.667 13.59 0.00 44.16 1.89
3985 6577 4.525874 TGGGACAATTGACATTGCATAACA 59.474 37.500 13.59 0.00 43.39 2.41
3986 6578 5.104374 GGGACAATTGACATTGCATAACAG 58.896 41.667 13.59 0.00 43.39 3.16
3987 6579 4.563976 GGACAATTGACATTGCATAACAGC 59.436 41.667 13.59 0.00 43.39 4.40
3988 6580 5.136816 ACAATTGACATTGCATAACAGCA 57.863 34.783 13.59 0.00 43.39 4.41
3989 6581 5.726397 ACAATTGACATTGCATAACAGCAT 58.274 33.333 13.59 0.00 45.19 3.79
3990 6582 6.865411 ACAATTGACATTGCATAACAGCATA 58.135 32.000 13.59 0.00 45.19 3.14
3991 6583 7.321908 ACAATTGACATTGCATAACAGCATAA 58.678 30.769 13.59 0.00 45.19 1.90
4007 6599 8.715191 AACAGCATAAGAGTTTCTATCTTGAG 57.285 34.615 0.00 0.00 37.56 3.02
4011 6603 7.978975 AGCATAAGAGTTTCTATCTTGAGACAC 59.021 37.037 0.00 0.00 37.56 3.67
4012 6604 7.043722 GCATAAGAGTTTCTATCTTGAGACACG 60.044 40.741 0.00 0.00 37.56 4.49
4018 6610 4.966965 TCTATCTTGAGACACGAGTTCC 57.033 45.455 0.00 0.00 0.00 3.62
4020 6612 3.859411 ATCTTGAGACACGAGTTCCTC 57.141 47.619 0.00 0.00 0.00 3.71
4022 6614 2.554462 TCTTGAGACACGAGTTCCTCTG 59.446 50.000 0.00 0.00 0.00 3.35
4028 6620 0.034059 CACGAGTTCCTCTGCCAAGT 59.966 55.000 0.00 0.00 0.00 3.16
4032 6624 2.613977 CGAGTTCCTCTGCCAAGTTCAT 60.614 50.000 0.00 0.00 0.00 2.57
4033 6625 3.416156 GAGTTCCTCTGCCAAGTTCATT 58.584 45.455 0.00 0.00 0.00 2.57
4034 6626 3.152341 AGTTCCTCTGCCAAGTTCATTG 58.848 45.455 0.00 0.00 38.74 2.82
4035 6627 3.149196 GTTCCTCTGCCAAGTTCATTGA 58.851 45.455 0.00 0.00 41.83 2.57
4036 6628 2.783135 TCCTCTGCCAAGTTCATTGAC 58.217 47.619 0.00 0.00 41.83 3.18
4037 6629 1.815003 CCTCTGCCAAGTTCATTGACC 59.185 52.381 0.00 0.00 41.83 4.02
4038 6630 1.815003 CTCTGCCAAGTTCATTGACCC 59.185 52.381 0.00 0.00 41.83 4.46
4039 6631 0.523072 CTGCCAAGTTCATTGACCCG 59.477 55.000 0.00 0.00 41.83 5.28
4040 6632 0.179004 TGCCAAGTTCATTGACCCGT 60.179 50.000 0.00 0.00 41.83 5.28
4041 6633 0.958822 GCCAAGTTCATTGACCCGTT 59.041 50.000 0.00 0.00 41.83 4.44
4042 6634 1.335872 GCCAAGTTCATTGACCCGTTG 60.336 52.381 0.00 0.00 41.83 4.10
4043 6635 1.269448 CCAAGTTCATTGACCCGTTGG 59.731 52.381 0.00 0.00 41.83 3.77
4044 6636 3.971346 CCAAGTTCATTGACCCGTTGGG 61.971 54.545 0.00 0.00 41.83 4.12
4117 6710 7.770201 TGTCAAATTTGAAGACAAAGTGATCA 58.230 30.769 22.07 8.55 46.84 2.92
4118 6711 7.701924 TGTCAAATTTGAAGACAAAGTGATCAC 59.298 33.333 22.07 18.47 46.84 3.06
4145 6738 9.516314 TTTATTATCATACTAATCGCTCATCCG 57.484 33.333 0.00 0.00 0.00 4.18
4153 6746 0.882042 ATCGCTCATCCGTTCATGGC 60.882 55.000 0.00 0.00 0.00 4.40
4195 6960 7.620880 AGCCTTTCATTTATACTACAGTGTCA 58.379 34.615 0.00 0.00 0.00 3.58
4197 6962 7.464178 GCCTTTCATTTATACTACAGTGTCACG 60.464 40.741 0.00 0.00 0.00 4.35
4291 7063 2.538512 ACCCGAAACTACAGACAACC 57.461 50.000 0.00 0.00 0.00 3.77
4293 7065 1.425412 CCGAAACTACAGACAACCGG 58.575 55.000 0.00 0.00 0.00 5.28
4296 7068 1.798813 GAAACTACAGACAACCGGCAG 59.201 52.381 0.00 0.00 0.00 4.85
4319 7091 2.572290 ACCACCTTGTACACTTGCTTC 58.428 47.619 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.577328 GAAGGTGCATGTGGTCCACG 61.577 60.000 17.27 5.07 37.14 4.94
36 37 0.251341 GAAGGGAAGGTGCATGTGGT 60.251 55.000 0.00 0.00 0.00 4.16
40 41 1.915141 ACAAGAAGGGAAGGTGCATG 58.085 50.000 0.00 0.00 0.00 4.06
44 45 3.250040 CACGTAAACAAGAAGGGAAGGTG 59.750 47.826 0.00 0.00 0.00 4.00
48 49 2.158726 AGCCACGTAAACAAGAAGGGAA 60.159 45.455 0.00 0.00 0.00 3.97
49 50 1.418637 AGCCACGTAAACAAGAAGGGA 59.581 47.619 0.00 0.00 0.00 4.20
50 51 1.892209 AGCCACGTAAACAAGAAGGG 58.108 50.000 0.00 0.00 0.00 3.95
63 64 1.263217 GTAAACACACCTGAAGCCACG 59.737 52.381 0.00 0.00 0.00 4.94
103 105 4.142271 CCTCTTTGCAAACACCAACTTACA 60.142 41.667 8.05 0.00 0.00 2.41
166 185 9.371136 GTCATCACAGTCAAGATCTAACATAAA 57.629 33.333 0.00 0.00 0.00 1.40
169 188 6.939622 TGTCATCACAGTCAAGATCTAACAT 58.060 36.000 0.00 0.00 0.00 2.71
171 190 7.038048 TGATGTCATCACAGTCAAGATCTAAC 58.962 38.462 11.62 0.00 35.41 2.34
172 191 7.174107 TGATGTCATCACAGTCAAGATCTAA 57.826 36.000 11.62 0.00 35.41 2.10
173 192 6.780457 TGATGTCATCACAGTCAAGATCTA 57.220 37.500 11.62 0.00 35.41 1.98
174 193 5.672421 TGATGTCATCACAGTCAAGATCT 57.328 39.130 11.62 0.00 35.41 2.75
175 194 6.035866 GTCTTGATGTCATCACAGTCAAGATC 59.964 42.308 19.43 13.11 45.84 2.75
176 195 5.873712 GTCTTGATGTCATCACAGTCAAGAT 59.126 40.000 19.43 0.00 45.84 2.40
177 196 5.221501 TGTCTTGATGTCATCACAGTCAAGA 60.222 40.000 15.23 15.41 44.39 3.02
178 197 4.992951 TGTCTTGATGTCATCACAGTCAAG 59.007 41.667 15.23 9.72 42.37 3.02
179 198 4.959723 TGTCTTGATGTCATCACAGTCAA 58.040 39.130 15.23 0.00 39.39 3.18
198 217 7.171337 ACCATTGCAAAAGTCACATTATTTGTC 59.829 33.333 1.71 0.00 36.00 3.18
200 219 7.424227 ACCATTGCAAAAGTCACATTATTTG 57.576 32.000 1.71 0.00 36.19 2.32
205 224 5.051816 CAGAACCATTGCAAAAGTCACATT 58.948 37.500 1.71 0.00 0.00 2.71
208 227 4.293415 CTCAGAACCATTGCAAAAGTCAC 58.707 43.478 1.71 2.67 0.00 3.67
223 242 0.250338 AGGGTTTCGGTGCTCAGAAC 60.250 55.000 0.70 0.00 0.00 3.01
238 257 0.469892 CCCCTTGTTGCAAAGAGGGT 60.470 55.000 31.49 0.00 44.88 4.34
250 269 4.167892 TGAATGATATGTAAGGCCCCTTGT 59.832 41.667 9.79 0.00 37.47 3.16
254 273 6.458210 CAAATTGAATGATATGTAAGGCCCC 58.542 40.000 0.00 0.00 0.00 5.80
275 294 8.414778 ACGGTTGTTATAAATTCTTTCACCAAA 58.585 29.630 0.00 0.00 0.00 3.28
276 295 7.942990 ACGGTTGTTATAAATTCTTTCACCAA 58.057 30.769 0.00 0.00 0.00 3.67
292 311 5.771469 TCGAGAAAGTGAATACGGTTGTTA 58.229 37.500 0.00 0.00 0.00 2.41
299 318 2.876091 TGGCTCGAGAAAGTGAATACG 58.124 47.619 18.75 0.00 0.00 3.06
317 336 8.889717 ACGTGATTAACCTTCTTATTTACATGG 58.110 33.333 0.00 0.00 0.00 3.66
320 339 8.836268 ACACGTGATTAACCTTCTTATTTACA 57.164 30.769 25.01 0.00 0.00 2.41
338 357 0.518636 GCCGTCTACACTACACGTGA 59.481 55.000 25.01 4.97 46.81 4.35
354 374 2.601314 TCTCACGATAAAAACGATGCCG 59.399 45.455 0.00 0.00 42.50 5.69
356 376 5.450376 TTCTCTCACGATAAAAACGATGC 57.550 39.130 0.00 0.00 34.70 3.91
359 379 6.444633 AGTCTTTCTCTCACGATAAAAACGA 58.555 36.000 0.00 0.00 34.70 3.85
366 386 2.355132 GGCGAGTCTTTCTCTCACGATA 59.645 50.000 0.00 0.00 40.75 2.92
377 397 4.487714 TTGGATATCAAGGCGAGTCTTT 57.512 40.909 4.83 0.00 0.00 2.52
388 408 4.814234 GTGCCGTGTAAGATTGGATATCAA 59.186 41.667 4.83 0.00 40.01 2.57
390 410 3.428870 CGTGCCGTGTAAGATTGGATATC 59.571 47.826 0.00 0.00 0.00 1.63
391 411 3.390135 CGTGCCGTGTAAGATTGGATAT 58.610 45.455 0.00 0.00 0.00 1.63
393 413 1.651987 CGTGCCGTGTAAGATTGGAT 58.348 50.000 0.00 0.00 0.00 3.41
394 414 1.017177 GCGTGCCGTGTAAGATTGGA 61.017 55.000 0.00 0.00 0.00 3.53
396 416 1.058748 CGCGTGCCGTGTAAGATTG 59.941 57.895 0.00 0.00 32.40 2.67
397 417 1.076533 CTCGCGTGCCGTGTAAGATT 61.077 55.000 5.77 0.00 38.57 2.40
398 418 1.516386 CTCGCGTGCCGTGTAAGAT 60.516 57.895 5.77 0.00 38.57 2.40
399 419 2.126618 CTCGCGTGCCGTGTAAGA 60.127 61.111 5.77 0.00 38.57 2.10
400 420 2.430244 ACTCGCGTGCCGTGTAAG 60.430 61.111 5.77 0.00 41.35 2.34
401 421 2.429571 GACTCGCGTGCCGTGTAA 60.430 61.111 5.77 0.00 42.97 2.41
402 422 2.860690 GATGACTCGCGTGCCGTGTA 62.861 60.000 5.77 0.00 42.97 2.90
403 423 4.357947 ATGACTCGCGTGCCGTGT 62.358 61.111 5.77 0.00 45.28 4.49
405 425 3.356639 ATGATGACTCGCGTGCCGT 62.357 57.895 5.77 0.00 38.35 5.68
406 426 2.580470 GATGATGACTCGCGTGCCG 61.580 63.158 5.77 0.00 38.61 5.69
407 427 2.240500 GGATGATGACTCGCGTGCC 61.241 63.158 5.77 0.00 0.00 5.01
409 429 2.492019 TTAGGATGATGACTCGCGTG 57.508 50.000 5.77 6.24 0.00 5.34
410 430 2.799917 GCTTTAGGATGATGACTCGCGT 60.800 50.000 5.77 0.00 0.00 6.01
411 431 1.789464 GCTTTAGGATGATGACTCGCG 59.211 52.381 0.00 0.00 0.00 5.87
413 433 4.624882 GCATAGCTTTAGGATGATGACTCG 59.375 45.833 0.00 0.00 0.00 4.18
414 434 5.545588 TGCATAGCTTTAGGATGATGACTC 58.454 41.667 0.00 0.00 0.00 3.36
415 435 5.557576 TGCATAGCTTTAGGATGATGACT 57.442 39.130 0.00 0.00 0.00 3.41
416 436 6.349115 CCAATGCATAGCTTTAGGATGATGAC 60.349 42.308 0.00 0.00 0.00 3.06
417 437 5.708697 CCAATGCATAGCTTTAGGATGATGA 59.291 40.000 0.00 0.00 0.00 2.92
418 438 5.475909 ACCAATGCATAGCTTTAGGATGATG 59.524 40.000 0.00 0.00 0.00 3.07
419 439 5.638133 ACCAATGCATAGCTTTAGGATGAT 58.362 37.500 0.00 0.00 0.00 2.45
420 440 5.052693 ACCAATGCATAGCTTTAGGATGA 57.947 39.130 0.00 0.00 0.00 2.92
421 441 4.823442 TGACCAATGCATAGCTTTAGGATG 59.177 41.667 0.00 0.00 0.00 3.51
422 442 5.052693 TGACCAATGCATAGCTTTAGGAT 57.947 39.130 0.00 0.00 0.00 3.24
423 443 4.502105 TGACCAATGCATAGCTTTAGGA 57.498 40.909 0.00 0.00 0.00 2.94
424 444 5.182001 GGTATGACCAATGCATAGCTTTAGG 59.818 44.000 0.00 0.00 41.24 2.69
425 445 5.182001 GGGTATGACCAATGCATAGCTTTAG 59.818 44.000 0.00 0.00 42.98 1.85
426 446 5.070001 GGGTATGACCAATGCATAGCTTTA 58.930 41.667 0.00 0.00 42.98 1.85
427 447 3.891366 GGGTATGACCAATGCATAGCTTT 59.109 43.478 0.00 0.00 42.98 3.51
428 448 3.139025 AGGGTATGACCAATGCATAGCTT 59.861 43.478 0.00 0.00 42.98 3.74
429 449 2.713167 AGGGTATGACCAATGCATAGCT 59.287 45.455 0.00 0.00 42.98 3.32
430 450 3.077359 GAGGGTATGACCAATGCATAGC 58.923 50.000 0.00 0.00 41.02 2.97
431 451 4.067896 GTGAGGGTATGACCAATGCATAG 58.932 47.826 0.00 0.00 41.02 2.23
432 452 3.494223 CGTGAGGGTATGACCAATGCATA 60.494 47.826 0.00 0.00 41.02 3.14
433 453 2.746142 CGTGAGGGTATGACCAATGCAT 60.746 50.000 0.00 0.00 41.02 3.96
434 454 1.406751 CGTGAGGGTATGACCAATGCA 60.407 52.381 0.00 0.00 41.02 3.96
435 455 1.134521 TCGTGAGGGTATGACCAATGC 60.135 52.381 0.00 0.00 41.02 3.56
436 456 2.826428 CTCGTGAGGGTATGACCAATG 58.174 52.381 0.00 0.00 41.02 2.82
447 467 2.878429 CCTCGTGACTCGTGAGGG 59.122 66.667 8.04 0.00 44.49 4.30
449 469 1.210413 CACCCTCGTGACTCGTGAG 59.790 63.158 0.00 0.00 43.14 3.51
450 470 1.105167 AACACCCTCGTGACTCGTGA 61.105 55.000 0.00 0.00 43.14 4.35
451 471 0.663568 GAACACCCTCGTGACTCGTG 60.664 60.000 0.00 0.00 43.14 4.35
452 472 0.822532 AGAACACCCTCGTGACTCGT 60.823 55.000 0.00 0.00 43.14 4.18
453 473 1.130749 CTAGAACACCCTCGTGACTCG 59.869 57.143 0.00 0.00 43.14 4.18
454 474 2.095161 CACTAGAACACCCTCGTGACTC 60.095 54.545 0.00 0.00 43.14 3.36
455 475 1.887198 CACTAGAACACCCTCGTGACT 59.113 52.381 0.00 0.00 43.14 3.41
456 476 1.067776 CCACTAGAACACCCTCGTGAC 60.068 57.143 0.00 0.00 43.14 3.67
457 477 1.202964 TCCACTAGAACACCCTCGTGA 60.203 52.381 0.00 0.00 43.14 4.35
460 480 1.409427 GGATCCACTAGAACACCCTCG 59.591 57.143 6.95 0.00 0.00 4.63
478 498 7.545265 GCTTTGCTGTGATTATTACAAAATGGA 59.455 33.333 0.00 0.00 0.00 3.41
486 506 6.638468 GGCTATTGCTTTGCTGTGATTATTAC 59.362 38.462 0.00 0.00 39.59 1.89
496 516 3.581024 TTCTTGGCTATTGCTTTGCTG 57.419 42.857 0.00 0.00 39.59 4.41
579 600 1.349627 GCATTGAGCGACGGTGATG 59.650 57.895 3.31 9.76 0.00 3.07
592 613 2.605818 CTGATTTGATTTGCCGGCATTG 59.394 45.455 33.25 6.73 0.00 2.82
594 615 2.101783 TCTGATTTGATTTGCCGGCAT 58.898 42.857 33.25 17.92 0.00 4.40
595 616 1.543607 TCTGATTTGATTTGCCGGCA 58.456 45.000 29.03 29.03 0.00 5.69
629 650 2.158370 GGAAGTGGAAGGGAAAGGGAAA 60.158 50.000 0.00 0.00 0.00 3.13
666 693 0.173481 CGCCGGAGTTCATCAGAGAA 59.827 55.000 5.05 0.00 0.00 2.87
698 725 1.470098 CCTCGAAAAGTCAGGGCATTG 59.530 52.381 0.00 0.00 0.00 2.82
701 728 0.034896 GTCCTCGAAAAGTCAGGGCA 59.965 55.000 0.00 0.00 31.04 5.36
709 736 1.217882 ACGCTTGTGTCCTCGAAAAG 58.782 50.000 0.00 0.00 0.00 2.27
717 744 1.192534 CGAGAAGAAACGCTTGTGTCC 59.807 52.381 0.00 0.00 36.83 4.02
723 750 3.714391 ACACTAACGAGAAGAAACGCTT 58.286 40.909 0.00 0.00 40.25 4.68
738 765 6.854496 AGTCGCAAATTGTTTCTACACTAA 57.146 33.333 0.00 0.00 32.98 2.24
760 787 1.192534 GGTTTGACTTCGACTCGCAAG 59.807 52.381 0.00 1.88 0.00 4.01
789 820 0.388263 GAAGTGTTCGACGGGTCTCC 60.388 60.000 0.00 0.00 0.00 3.71
1260 3391 3.649277 CTGGTAGAACTGCGCCGCT 62.649 63.158 11.67 0.00 0.00 5.52
1389 3520 5.069318 GGAATCAAGAAGAGATCCCCAATC 58.931 45.833 0.00 0.00 32.62 2.67
1390 3521 4.479796 TGGAATCAAGAAGAGATCCCCAAT 59.520 41.667 0.00 0.00 36.05 3.16
1429 3562 1.136085 GTGTGTGTGTGTGTGTGTGTC 60.136 52.381 0.00 0.00 0.00 3.67
1440 3579 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1441 3580 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1472 3615 2.971330 TGCCAACCCTGAAAATGATGTT 59.029 40.909 0.00 0.00 0.00 2.71
1492 3635 2.937149 CAGAACACAGAGCATCAGGATG 59.063 50.000 4.91 4.91 41.60 3.51
1716 3859 2.426024 CAATGACCCAAATGAGGAGCAG 59.574 50.000 0.00 0.00 0.00 4.24
1811 3954 1.968493 TGGAACGGAGGGAGTATATGC 59.032 52.381 0.00 0.00 0.00 3.14
1814 3957 6.138263 TCTATTTTGGAACGGAGGGAGTATA 58.862 40.000 0.00 0.00 0.00 1.47
1815 3958 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
1817 3960 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
1818 3961 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
1820 3963 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
1822 3965 5.665459 AGAGTCATCTATTTTGGAACGGAG 58.335 41.667 0.00 0.00 32.54 4.63
1823 3966 5.677319 AGAGTCATCTATTTTGGAACGGA 57.323 39.130 0.00 0.00 32.54 4.69
1824 3967 6.574350 ACTAGAGTCATCTATTTTGGAACGG 58.426 40.000 0.00 0.00 37.41 4.44
1825 3968 7.687005 GACTAGAGTCATCTATTTTGGAACG 57.313 40.000 4.77 0.00 44.18 3.95
1840 3983 6.697892 CCGTTCCAAAATAGATGACTAGAGTC 59.302 42.308 0.00 2.56 44.97 3.36
1841 3984 6.380274 TCCGTTCCAAAATAGATGACTAGAGT 59.620 38.462 0.00 0.00 31.78 3.24
1842 3985 6.806751 TCCGTTCCAAAATAGATGACTAGAG 58.193 40.000 0.00 0.00 31.78 2.43
1843 3986 6.183360 CCTCCGTTCCAAAATAGATGACTAGA 60.183 42.308 0.00 0.00 31.78 2.43
1844 3987 5.986135 CCTCCGTTCCAAAATAGATGACTAG 59.014 44.000 0.00 0.00 31.78 2.57
1845 3988 5.163343 CCCTCCGTTCCAAAATAGATGACTA 60.163 44.000 0.00 0.00 0.00 2.59
1846 3989 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
1847 3990 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
1848 3991 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
1849 3992 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
1850 3993 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
1851 3994 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
1852 3995 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
1853 3996 6.743208 GCATATACTCCCTCCGTTCCAAAATA 60.743 42.308 0.00 0.00 0.00 1.40
1854 3997 5.621193 CATATACTCCCTCCGTTCCAAAAT 58.379 41.667 0.00 0.00 0.00 1.82
1855 3998 4.685030 GCATATACTCCCTCCGTTCCAAAA 60.685 45.833 0.00 0.00 0.00 2.44
1856 3999 3.181458 GCATATACTCCCTCCGTTCCAAA 60.181 47.826 0.00 0.00 0.00 3.28
1857 4000 2.367567 GCATATACTCCCTCCGTTCCAA 59.632 50.000 0.00 0.00 0.00 3.53
1858 4001 1.968493 GCATATACTCCCTCCGTTCCA 59.032 52.381 0.00 0.00 0.00 3.53
1859 4002 2.249139 AGCATATACTCCCTCCGTTCC 58.751 52.381 0.00 0.00 0.00 3.62
1860 4003 4.705507 TGATAGCATATACTCCCTCCGTTC 59.294 45.833 0.00 0.00 0.00 3.95
1861 4004 4.673968 TGATAGCATATACTCCCTCCGTT 58.326 43.478 0.00 0.00 0.00 4.44
1862 4005 4.317530 TGATAGCATATACTCCCTCCGT 57.682 45.455 0.00 0.00 0.00 4.69
1863 4006 5.221342 GGATTGATAGCATATACTCCCTCCG 60.221 48.000 0.00 0.00 0.00 4.63
1864 4007 5.902431 AGGATTGATAGCATATACTCCCTCC 59.098 44.000 0.00 0.00 0.00 4.30
1865 4008 7.430760 AAGGATTGATAGCATATACTCCCTC 57.569 40.000 0.00 0.00 0.00 4.30
1906 4049 2.283298 AGAACATCGAATTCGCATGCT 58.717 42.857 26.19 19.84 39.60 3.79
1907 4050 2.633299 GAGAACATCGAATTCGCATGC 58.367 47.619 26.19 7.91 39.60 4.06
1930 4073 6.432162 ACAACAAGCACAAGACATATCATTCT 59.568 34.615 0.00 0.00 0.00 2.40
2018 4161 1.153667 CACTCGGCTCTCCTTCAGC 60.154 63.158 0.00 0.00 36.02 4.26
2357 4527 9.606631 TTAACCATTAATGCCATGTTTTTATCC 57.393 29.630 10.11 0.00 0.00 2.59
2409 4579 0.178953 AAAGTGGCCAGGCATCTGTT 60.179 50.000 15.19 5.48 39.31 3.16
2470 4794 7.969536 AGATATAGTGCACAAATACCATGTC 57.030 36.000 21.04 9.91 0.00 3.06
2527 4851 6.418101 TGCCATCTTCAGAAGCTTATTAGTT 58.582 36.000 5.15 0.00 0.00 2.24
2551 4877 3.118884 GGAACATTTGAGCAGATTGGCAT 60.119 43.478 0.00 0.00 35.83 4.40
2586 4912 5.393461 GCAAGTTTGGTTAGGATCTGATTGG 60.393 44.000 0.00 0.00 0.00 3.16
2660 5140 5.916318 TGCAAATGTTCCATGAGTTTCTTT 58.084 33.333 0.00 0.00 0.00 2.52
2669 5149 4.308265 TGTGACAATGCAAATGTTCCATG 58.692 39.130 9.56 0.00 0.00 3.66
2671 5151 3.243805 CCTGTGACAATGCAAATGTTCCA 60.244 43.478 9.56 8.47 0.00 3.53
3001 5481 6.384224 CACATTTTGTATTGACATGAGCAGT 58.616 36.000 0.00 0.00 34.86 4.40
3013 5493 2.539302 AGCAGCCCCACATTTTGTATT 58.461 42.857 0.00 0.00 0.00 1.89
3109 5589 3.560068 AGACGTTTCTGATCAACACAACC 59.440 43.478 0.00 0.00 0.00 3.77
3154 5634 2.287849 GCTTTGAGGGACAAGAAACAGC 60.288 50.000 0.00 0.00 39.77 4.40
3166 5646 0.035458 AGTTCTGGTCGCTTTGAGGG 59.965 55.000 0.00 0.00 0.00 4.30
3211 5691 2.429478 TCTGTAGGTTCGTCATCGTGA 58.571 47.619 0.00 0.00 38.33 4.35
3224 5704 3.529533 CATCCTTGACAGCTTCTGTAGG 58.470 50.000 8.71 8.71 45.44 3.18
3256 5736 0.111266 CAACGACGGAAAACTGAGCG 60.111 55.000 0.00 0.00 0.00 5.03
3272 5752 3.559238 ACTTGAATCATCCGCAACAAC 57.441 42.857 0.00 0.00 0.00 3.32
3354 5834 2.704596 AGTGGCATCAGCTCTACATCAT 59.295 45.455 0.00 0.00 41.70 2.45
3355 5835 2.113807 AGTGGCATCAGCTCTACATCA 58.886 47.619 0.00 0.00 41.70 3.07
3370 5850 4.193826 TCTAGTCTTGTTCATCAGTGGC 57.806 45.455 0.00 0.00 0.00 5.01
3387 5867 5.105187 TGAGATGATCACCCAACTGTTCTAG 60.105 44.000 0.00 0.00 31.12 2.43
3388 5868 4.777366 TGAGATGATCACCCAACTGTTCTA 59.223 41.667 0.00 0.00 31.12 2.10
3448 5928 4.116961 CGAAACGTATAATCAGAAGGCCA 58.883 43.478 5.01 0.00 0.00 5.36
3450 5930 4.117685 ACCGAAACGTATAATCAGAAGGC 58.882 43.478 0.00 0.00 0.00 4.35
3482 5962 7.873739 ACTTTTGTAGCAAACATTATCTTGC 57.126 32.000 0.00 0.00 46.68 4.01
3489 5969 9.458374 GTGTACATTACTTTTGTAGCAAACATT 57.542 29.630 0.00 0.00 38.10 2.71
3490 5970 8.625651 TGTGTACATTACTTTTGTAGCAAACAT 58.374 29.630 0.00 0.00 38.10 2.71
3491 5971 7.986562 TGTGTACATTACTTTTGTAGCAAACA 58.013 30.769 0.00 0.00 36.14 2.83
3492 5972 8.844441 TTGTGTACATTACTTTTGTAGCAAAC 57.156 30.769 0.00 0.00 36.14 2.93
3495 5975 9.672086 GAAATTGTGTACATTACTTTTGTAGCA 57.328 29.630 0.00 0.00 36.14 3.49
3496 5976 9.893305 AGAAATTGTGTACATTACTTTTGTAGC 57.107 29.630 0.00 0.00 36.14 3.58
3547 6035 0.390472 ACTTGCTACTCGGCTGCTTC 60.390 55.000 0.00 0.00 0.00 3.86
3555 6043 3.511699 TGTATGCTTCACTTGCTACTCG 58.488 45.455 0.00 0.00 0.00 4.18
3656 6175 6.101997 GGGAAGAAACATTGAATAGGCAAAG 58.898 40.000 0.00 0.00 0.00 2.77
3660 6179 4.023291 TGGGGAAGAAACATTGAATAGGC 58.977 43.478 0.00 0.00 0.00 3.93
3666 6187 3.077391 AGGGAATGGGGAAGAAACATTGA 59.923 43.478 0.00 0.00 35.17 2.57
3669 6190 3.077391 TGAAGGGAATGGGGAAGAAACAT 59.923 43.478 0.00 0.00 0.00 2.71
3678 6199 1.355720 ACTCAACTGAAGGGAATGGGG 59.644 52.381 0.00 0.00 0.00 4.96
3681 6202 6.265422 AGGTTTTAACTCAACTGAAGGGAATG 59.735 38.462 0.00 0.00 0.00 2.67
3682 6203 6.265422 CAGGTTTTAACTCAACTGAAGGGAAT 59.735 38.462 0.00 0.00 0.00 3.01
3683 6204 5.592688 CAGGTTTTAACTCAACTGAAGGGAA 59.407 40.000 0.00 0.00 0.00 3.97
3686 6207 7.282450 AGTTACAGGTTTTAACTCAACTGAAGG 59.718 37.037 0.00 0.00 35.27 3.46
3720 6305 4.636249 GCCAAACATTTCAACCATAACCA 58.364 39.130 0.00 0.00 0.00 3.67
3735 6320 5.837437 ACAATATTCTCAAAACGCCAAACA 58.163 33.333 0.00 0.00 0.00 2.83
3766 6351 4.575885 TGAAATACTAGCACTTCACACCC 58.424 43.478 0.00 0.00 0.00 4.61
3800 6385 4.963628 GGAGTGGGGAGTTTAGAATAGAGT 59.036 45.833 0.00 0.00 0.00 3.24
3816 6405 4.133373 CATGCCCTGGGGAGTGGG 62.133 72.222 16.03 0.00 37.50 4.61
3819 6408 1.729267 AAACACATGCCCTGGGGAGT 61.729 55.000 16.03 9.09 37.50 3.85
3831 6420 3.637769 ACACAGGGTTGGTAAAACACAT 58.362 40.909 0.00 0.00 0.00 3.21
3836 6425 5.050126 TGTGATACACAGGGTTGGTAAAA 57.950 39.130 0.25 0.00 39.62 1.52
3851 6441 0.173481 TCTGCTCGTGCCTGTGATAC 59.827 55.000 7.05 0.00 38.71 2.24
3864 6454 5.402398 GGTTTTCACCATTACATTCTGCTC 58.598 41.667 0.00 0.00 43.61 4.26
3865 6455 4.082787 CGGTTTTCACCATTACATTCTGCT 60.083 41.667 0.00 0.00 44.53 4.24
3873 6463 6.068473 AGAAAAGACGGTTTTCACCATTAC 57.932 37.500 20.79 0.41 44.53 1.89
3875 6465 5.592104 AAGAAAAGACGGTTTTCACCATT 57.408 34.783 20.79 8.79 44.53 3.16
3876 6466 5.592104 AAAGAAAAGACGGTTTTCACCAT 57.408 34.783 20.79 7.22 44.53 3.55
3893 6483 7.695055 TCTACCATCCAAAATGAGGTAAAGAA 58.305 34.615 0.00 0.00 34.67 2.52
3928 6520 5.867716 TGCTAGATCTGTACTTCGGTTTTTC 59.132 40.000 5.18 0.00 0.00 2.29
3934 6526 6.260870 ACATATGCTAGATCTGTACTTCGG 57.739 41.667 5.18 0.00 0.00 4.30
3952 6544 8.415553 CAATGTCAATTGTCCCACATAACATAT 58.584 33.333 10.03 0.00 38.72 1.78
3965 6557 5.162794 TGCTGTTATGCAATGTCAATTGTC 58.837 37.500 5.13 0.00 44.34 3.18
3967 6559 7.703197 TCTTATGCTGTTATGCAATGTCAATTG 59.297 33.333 0.00 0.00 46.61 2.32
3975 6567 7.636150 AGAAACTCTTATGCTGTTATGCAAT 57.364 32.000 0.00 0.00 46.61 3.56
3984 6576 7.978414 TGTCTCAAGATAGAAACTCTTATGCTG 59.022 37.037 0.00 0.00 31.82 4.41
3985 6577 7.978975 GTGTCTCAAGATAGAAACTCTTATGCT 59.021 37.037 0.00 0.00 31.93 3.79
3986 6578 7.043722 CGTGTCTCAAGATAGAAACTCTTATGC 60.044 40.741 0.00 0.00 32.38 3.14
3987 6579 8.184848 TCGTGTCTCAAGATAGAAACTCTTATG 58.815 37.037 0.00 0.00 32.38 1.90
3988 6580 8.282455 TCGTGTCTCAAGATAGAAACTCTTAT 57.718 34.615 0.00 0.00 32.38 1.73
3989 6581 7.390996 ACTCGTGTCTCAAGATAGAAACTCTTA 59.609 37.037 0.00 0.00 32.38 2.10
3990 6582 6.207810 ACTCGTGTCTCAAGATAGAAACTCTT 59.792 38.462 0.00 0.00 32.38 2.85
3991 6583 5.708230 ACTCGTGTCTCAAGATAGAAACTCT 59.292 40.000 0.00 0.00 32.38 3.24
4012 6604 5.044301 TCAATGAACTTGGCAGAGGAACTC 61.044 45.833 0.00 0.00 45.04 3.01
4018 6610 1.815003 GGGTCAATGAACTTGGCAGAG 59.185 52.381 0.00 0.00 41.44 3.35
4020 6612 0.523072 CGGGTCAATGAACTTGGCAG 59.477 55.000 0.00 0.00 41.44 4.85
4022 6614 0.958822 AACGGGTCAATGAACTTGGC 59.041 50.000 0.00 0.00 38.81 4.52
4028 6620 4.832741 CCCCAACGGGTCAATGAA 57.167 55.556 0.00 0.00 45.50 2.57
4046 6638 0.926293 TTATTCAAGGCCCTCCCTGG 59.074 55.000 0.00 0.00 45.62 4.45
4047 6639 1.566231 AGTTATTCAAGGCCCTCCCTG 59.434 52.381 0.00 0.00 45.62 4.45
4049 6641 1.564348 TCAGTTATTCAAGGCCCTCCC 59.436 52.381 0.00 0.00 0.00 4.30
4050 6642 3.366052 TTCAGTTATTCAAGGCCCTCC 57.634 47.619 0.00 0.00 0.00 4.30
4051 6643 5.921962 AATTTCAGTTATTCAAGGCCCTC 57.078 39.130 0.00 0.00 0.00 4.30
4052 6644 5.779771 TCAAATTTCAGTTATTCAAGGCCCT 59.220 36.000 0.00 0.00 0.00 5.19
4053 6645 6.036577 TCAAATTTCAGTTATTCAAGGCCC 57.963 37.500 0.00 0.00 0.00 5.80
4054 6646 7.818930 TCATTCAAATTTCAGTTATTCAAGGCC 59.181 33.333 0.00 0.00 0.00 5.19
4055 6647 8.761575 TCATTCAAATTTCAGTTATTCAAGGC 57.238 30.769 0.00 0.00 0.00 4.35
4056 6648 9.362539 CCTCATTCAAATTTCAGTTATTCAAGG 57.637 33.333 0.00 0.00 0.00 3.61
4087 6680 7.329226 CACTTTGTCTTCAAATTTGACAACACT 59.671 33.333 24.23 13.16 46.21 3.55
4094 6687 7.999679 AGTGATCACTTTGTCTTCAAATTTGA 58.000 30.769 22.89 16.91 41.77 2.69
4145 6738 0.593128 GTGTGTGTCTGGCCATGAAC 59.407 55.000 5.51 5.95 0.00 3.18
4153 6746 1.789078 GCTTGCCTGTGTGTGTCTGG 61.789 60.000 0.00 0.00 0.00 3.86
4195 6960 2.093500 TGCTATCTGCCATTTCTGACGT 60.093 45.455 0.00 0.00 42.00 4.34
4197 6962 4.970662 TTTGCTATCTGCCATTTCTGAC 57.029 40.909 0.00 0.00 42.00 3.51
4291 7063 1.206132 TGTACAAGGTGGTATCTGCCG 59.794 52.381 0.00 0.00 0.00 5.69
4293 7065 3.611766 AGTGTACAAGGTGGTATCTGC 57.388 47.619 0.00 0.00 0.00 4.26
4296 7068 3.939066 AGCAAGTGTACAAGGTGGTATC 58.061 45.455 0.00 0.00 0.00 2.24
4319 7091 1.398390 GCCGCTGGTTCTGATTAACAG 59.602 52.381 0.00 0.00 46.97 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.