Multiple sequence alignment - TraesCS2B01G372700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G372700 chr2B 100.000 3214 0 0 1 3214 531134183 531137396 0.000000e+00 5936.0
1 TraesCS2B01G372700 chr2D 92.818 2353 118 25 765 3084 450997793 451000127 0.000000e+00 3362.0
2 TraesCS2B01G372700 chr2D 98.485 132 1 1 3084 3214 451000180 451000311 6.930000e-57 231.0
3 TraesCS2B01G372700 chr2D 93.333 45 3 0 396 440 450996084 450996128 2.070000e-07 67.6
4 TraesCS2B01G372700 chr2A 90.952 1923 120 23 765 2669 598617352 598615466 0.000000e+00 2538.0
5 TraesCS2B01G372700 chr2A 85.366 451 31 16 2667 3084 598615428 598614980 4.920000e-118 435.0
6 TraesCS2B01G372700 chr2A 95.455 132 5 1 3084 3214 598614927 598614796 3.250000e-50 209.0
7 TraesCS2B01G372700 chr3B 87.923 414 36 9 1931 2335 680237234 680237642 2.900000e-130 475.0
8 TraesCS2B01G372700 chr3B 88.489 139 14 2 2330 2468 680238757 680238893 1.980000e-37 167.0
9 TraesCS2B01G372700 chr7B 91.803 183 13 2 119 300 173067955 173068136 1.480000e-63 254.0
10 TraesCS2B01G372700 chr6B 91.304 184 14 2 119 300 675396131 675395948 1.910000e-62 250.0
11 TraesCS2B01G372700 chr5A 91.257 183 15 1 119 300 569789368 569789550 6.890000e-62 248.0
12 TraesCS2B01G372700 chr4B 91.257 183 15 1 119 300 145794010 145794192 6.890000e-62 248.0
13 TraesCS2B01G372700 chr4B 90.055 181 13 3 122 300 423778353 423778176 2.490000e-56 230.0
14 TraesCS2B01G372700 chr3D 91.257 183 15 1 119 300 506036863 506037045 6.890000e-62 248.0
15 TraesCS2B01G372700 chr3D 88.950 181 14 2 2295 2470 517004308 517004129 5.400000e-53 219.0
16 TraesCS2B01G372700 chr4D 91.620 179 14 1 123 300 73225349 73225527 2.480000e-61 246.0
17 TraesCS2B01G372700 chr4D 90.710 183 16 1 119 300 21890304 21890486 3.200000e-60 243.0
18 TraesCS2B01G372700 chr6D 90.710 183 15 2 119 300 429084229 429084048 3.200000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G372700 chr2B 531134183 531137396 3213 False 5936.000000 5936 100.000000 1 3214 1 chr2B.!!$F1 3213
1 TraesCS2B01G372700 chr2D 450996084 451000311 4227 False 1220.200000 3362 94.878667 396 3214 3 chr2D.!!$F1 2818
2 TraesCS2B01G372700 chr2A 598614796 598617352 2556 True 1060.666667 2538 90.591000 765 3214 3 chr2A.!!$R1 2449
3 TraesCS2B01G372700 chr3B 680237234 680238893 1659 False 321.000000 475 88.206000 1931 2468 2 chr3B.!!$F1 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
480 481 0.108138 AGGAGTGCGTGTATGCTTCC 60.108 55.0 10.32 10.32 38.66 3.46 F
481 482 0.391130 GGAGTGCGTGTATGCTTCCA 60.391 55.0 12.30 0.00 38.42 3.53 F
483 484 0.608130 AGTGCGTGTATGCTTCCAGA 59.392 50.0 0.00 0.00 35.36 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1783 3214 0.179108 GAGGCAGTTACCAGGCTACG 60.179 60.000 1.80 0.00 41.09 3.51 R
1821 3256 1.168714 GGTCATCTGGGCAGTTTGAC 58.831 55.000 2.36 2.36 39.54 3.18 R
2386 4950 1.337823 GCTCACGAAGGCACCTTTAGA 60.338 52.381 2.89 1.90 36.26 2.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.743636 TAACTGGGCAACTCTCTTCG 57.256 50.000 0.00 0.00 0.00 3.79
21 22 1.048601 AACTGGGCAACTCTCTTCGA 58.951 50.000 0.00 0.00 0.00 3.71
22 23 1.270907 ACTGGGCAACTCTCTTCGAT 58.729 50.000 0.00 0.00 0.00 3.59
23 24 1.205893 ACTGGGCAACTCTCTTCGATC 59.794 52.381 0.00 0.00 0.00 3.69
24 25 0.537188 TGGGCAACTCTCTTCGATCC 59.463 55.000 0.00 0.00 0.00 3.36
25 26 0.827368 GGGCAACTCTCTTCGATCCT 59.173 55.000 0.00 0.00 0.00 3.24
26 27 1.208293 GGGCAACTCTCTTCGATCCTT 59.792 52.381 0.00 0.00 0.00 3.36
27 28 2.355209 GGGCAACTCTCTTCGATCCTTT 60.355 50.000 0.00 0.00 0.00 3.11
28 29 3.339141 GGCAACTCTCTTCGATCCTTTT 58.661 45.455 0.00 0.00 0.00 2.27
29 30 3.753797 GGCAACTCTCTTCGATCCTTTTT 59.246 43.478 0.00 0.00 0.00 1.94
54 55 8.561738 TTTTAATGAATCAGGACCTAAGTGAC 57.438 34.615 0.00 0.00 0.00 3.67
55 56 4.762289 ATGAATCAGGACCTAAGTGACC 57.238 45.455 0.00 0.00 0.00 4.02
56 57 2.496070 TGAATCAGGACCTAAGTGACCG 59.504 50.000 0.00 0.00 0.00 4.79
57 58 2.233305 ATCAGGACCTAAGTGACCGT 57.767 50.000 0.00 0.00 0.00 4.83
58 59 1.254026 TCAGGACCTAAGTGACCGTG 58.746 55.000 0.00 0.00 0.00 4.94
59 60 0.966920 CAGGACCTAAGTGACCGTGT 59.033 55.000 0.00 0.00 0.00 4.49
60 61 1.343465 CAGGACCTAAGTGACCGTGTT 59.657 52.381 0.00 0.00 0.00 3.32
61 62 2.044758 AGGACCTAAGTGACCGTGTTT 58.955 47.619 0.00 0.00 0.00 2.83
62 63 2.036862 AGGACCTAAGTGACCGTGTTTC 59.963 50.000 0.00 0.00 0.00 2.78
63 64 2.224113 GGACCTAAGTGACCGTGTTTCA 60.224 50.000 0.00 0.00 0.00 2.69
64 65 3.057734 GACCTAAGTGACCGTGTTTCAG 58.942 50.000 0.00 0.00 0.00 3.02
65 66 2.696707 ACCTAAGTGACCGTGTTTCAGA 59.303 45.455 0.00 0.00 0.00 3.27
66 67 3.133362 ACCTAAGTGACCGTGTTTCAGAA 59.867 43.478 0.00 0.00 0.00 3.02
67 68 4.124238 CCTAAGTGACCGTGTTTCAGAAA 58.876 43.478 0.00 0.00 0.00 2.52
68 69 4.573201 CCTAAGTGACCGTGTTTCAGAAAA 59.427 41.667 0.00 0.00 0.00 2.29
69 70 5.065474 CCTAAGTGACCGTGTTTCAGAAAAA 59.935 40.000 0.00 0.00 0.00 1.94
118 119 5.752892 TTTTTAACACGGTACAGATGCAA 57.247 34.783 0.00 0.00 0.00 4.08
119 120 4.735662 TTTAACACGGTACAGATGCAAC 57.264 40.909 0.00 0.00 0.00 4.17
120 121 2.543777 AACACGGTACAGATGCAACT 57.456 45.000 0.00 0.00 0.00 3.16
121 122 3.671008 AACACGGTACAGATGCAACTA 57.329 42.857 0.00 0.00 0.00 2.24
122 123 3.671008 ACACGGTACAGATGCAACTAA 57.329 42.857 0.00 0.00 0.00 2.24
123 124 3.585862 ACACGGTACAGATGCAACTAAG 58.414 45.455 0.00 0.00 0.00 2.18
124 125 2.348666 CACGGTACAGATGCAACTAAGC 59.651 50.000 0.00 0.00 0.00 3.09
125 126 1.933853 CGGTACAGATGCAACTAAGCC 59.066 52.381 0.00 0.00 0.00 4.35
126 127 1.933853 GGTACAGATGCAACTAAGCCG 59.066 52.381 0.00 0.00 0.00 5.52
127 128 1.933853 GTACAGATGCAACTAAGCCGG 59.066 52.381 0.00 0.00 0.00 6.13
128 129 1.026718 ACAGATGCAACTAAGCCGGC 61.027 55.000 21.89 21.89 0.00 6.13
129 130 1.026182 CAGATGCAACTAAGCCGGCA 61.026 55.000 31.54 7.98 41.00 5.69
130 131 4.664062 ATGCAACTAAGCCGGCAT 57.336 50.000 31.54 21.32 41.81 4.40
131 132 1.140852 AGATGCAACTAAGCCGGCATA 59.859 47.619 31.54 21.29 46.17 3.14
132 133 2.154462 GATGCAACTAAGCCGGCATAT 58.846 47.619 31.54 17.05 46.17 1.78
133 134 1.593196 TGCAACTAAGCCGGCATATC 58.407 50.000 31.54 10.97 0.00 1.63
134 135 1.134250 TGCAACTAAGCCGGCATATCA 60.134 47.619 31.54 13.56 0.00 2.15
135 136 2.154462 GCAACTAAGCCGGCATATCAT 58.846 47.619 31.54 2.66 0.00 2.45
136 137 2.160417 GCAACTAAGCCGGCATATCATC 59.840 50.000 31.54 8.88 0.00 2.92
137 138 3.668447 CAACTAAGCCGGCATATCATCT 58.332 45.455 31.54 0.76 0.00 2.90
138 139 4.067896 CAACTAAGCCGGCATATCATCTT 58.932 43.478 31.54 14.07 0.00 2.40
139 140 5.237815 CAACTAAGCCGGCATATCATCTTA 58.762 41.667 31.54 14.48 0.00 2.10
140 141 5.483685 ACTAAGCCGGCATATCATCTTAA 57.516 39.130 31.54 0.00 0.00 1.85
141 142 5.865085 ACTAAGCCGGCATATCATCTTAAA 58.135 37.500 31.54 0.00 0.00 1.52
142 143 6.296026 ACTAAGCCGGCATATCATCTTAAAA 58.704 36.000 31.54 0.00 0.00 1.52
143 144 6.942576 ACTAAGCCGGCATATCATCTTAAAAT 59.057 34.615 31.54 0.00 0.00 1.82
144 145 6.655078 AAGCCGGCATATCATCTTAAAATT 57.345 33.333 31.54 4.72 0.00 1.82
145 146 6.655078 AGCCGGCATATCATCTTAAAATTT 57.345 33.333 31.54 0.00 0.00 1.82
146 147 7.759489 AGCCGGCATATCATCTTAAAATTTA 57.241 32.000 31.54 0.00 0.00 1.40
147 148 8.353423 AGCCGGCATATCATCTTAAAATTTAT 57.647 30.769 31.54 0.00 0.00 1.40
148 149 8.246180 AGCCGGCATATCATCTTAAAATTTATG 58.754 33.333 31.54 0.00 0.00 1.90
149 150 8.243426 GCCGGCATATCATCTTAAAATTTATGA 58.757 33.333 24.80 4.30 33.20 2.15
162 163 9.651718 CTTAAAATTTATGAAGTCATCGTAGGC 57.348 33.333 0.00 0.00 37.76 3.93
163 164 7.624360 AAAATTTATGAAGTCATCGTAGGCA 57.376 32.000 0.00 0.00 37.76 4.75
164 165 7.807977 AAATTTATGAAGTCATCGTAGGCAT 57.192 32.000 0.00 0.00 37.76 4.40
165 166 7.807977 AATTTATGAAGTCATCGTAGGCATT 57.192 32.000 0.00 0.00 37.76 3.56
166 167 7.807977 ATTTATGAAGTCATCGTAGGCATTT 57.192 32.000 0.00 0.00 37.76 2.32
167 168 6.844696 TTATGAAGTCATCGTAGGCATTTC 57.155 37.500 0.00 0.00 37.76 2.17
168 169 4.200838 TGAAGTCATCGTAGGCATTTCA 57.799 40.909 0.00 0.00 0.00 2.69
169 170 4.769688 TGAAGTCATCGTAGGCATTTCAT 58.230 39.130 0.00 0.00 0.00 2.57
170 171 4.811024 TGAAGTCATCGTAGGCATTTCATC 59.189 41.667 0.00 0.00 0.00 2.92
171 172 3.384668 AGTCATCGTAGGCATTTCATCG 58.615 45.455 0.00 0.00 0.00 3.84
172 173 3.123804 GTCATCGTAGGCATTTCATCGT 58.876 45.455 0.00 0.00 0.00 3.73
173 174 3.182572 GTCATCGTAGGCATTTCATCGTC 59.817 47.826 0.00 0.00 0.00 4.20
174 175 1.835121 TCGTAGGCATTTCATCGTCG 58.165 50.000 0.00 0.00 0.00 5.12
175 176 1.402613 TCGTAGGCATTTCATCGTCGA 59.597 47.619 0.00 0.00 0.00 4.20
176 177 1.517276 CGTAGGCATTTCATCGTCGAC 59.483 52.381 5.18 5.18 0.00 4.20
177 178 1.517276 GTAGGCATTTCATCGTCGACG 59.483 52.381 31.30 31.30 41.45 5.12
178 179 0.806102 AGGCATTTCATCGTCGACGG 60.806 55.000 35.05 21.47 40.29 4.79
179 180 1.636340 GCATTTCATCGTCGACGGG 59.364 57.895 35.05 26.75 40.29 5.28
180 181 0.804544 GCATTTCATCGTCGACGGGA 60.805 55.000 35.05 28.39 40.29 5.14
181 182 1.635844 CATTTCATCGTCGACGGGAA 58.364 50.000 35.05 31.57 40.29 3.97
182 183 1.323534 CATTTCATCGTCGACGGGAAC 59.676 52.381 35.05 0.00 40.29 3.62
183 184 0.314618 TTTCATCGTCGACGGGAACA 59.685 50.000 35.05 23.05 40.29 3.18
184 185 0.528924 TTCATCGTCGACGGGAACAT 59.471 50.000 35.05 19.49 40.29 2.71
185 186 0.528924 TCATCGTCGACGGGAACATT 59.471 50.000 35.05 10.75 40.29 2.71
186 187 1.067425 TCATCGTCGACGGGAACATTT 60.067 47.619 35.05 9.43 40.29 2.32
187 188 1.323534 CATCGTCGACGGGAACATTTC 59.676 52.381 35.05 0.00 40.29 2.17
197 198 2.879103 GGAACATTTCCTCCCACTGA 57.121 50.000 0.00 0.00 46.57 3.41
198 199 3.154827 GGAACATTTCCTCCCACTGAA 57.845 47.619 0.00 0.00 46.57 3.02
199 200 3.701664 GGAACATTTCCTCCCACTGAAT 58.298 45.455 0.00 0.00 46.57 2.57
200 201 3.445096 GGAACATTTCCTCCCACTGAATG 59.555 47.826 0.00 0.00 46.57 2.67
201 202 2.450476 ACATTTCCTCCCACTGAATGC 58.550 47.619 0.00 0.00 0.00 3.56
202 203 1.402968 CATTTCCTCCCACTGAATGCG 59.597 52.381 0.00 0.00 0.00 4.73
203 204 0.960364 TTTCCTCCCACTGAATGCGC 60.960 55.000 0.00 0.00 0.00 6.09
204 205 2.046023 CCTCCCACTGAATGCGCA 60.046 61.111 14.96 14.96 0.00 6.09
205 206 1.452651 CCTCCCACTGAATGCGCAT 60.453 57.895 19.28 19.28 0.00 4.73
206 207 1.442526 CCTCCCACTGAATGCGCATC 61.443 60.000 25.53 17.12 0.00 3.91
207 208 1.769098 CTCCCACTGAATGCGCATCG 61.769 60.000 25.53 17.09 0.00 3.84
218 219 3.409856 CGCATCGCCGGAAATTCT 58.590 55.556 5.05 0.00 0.00 2.40
219 220 1.010797 CGCATCGCCGGAAATTCTG 60.011 57.895 5.05 0.00 0.00 3.02
220 221 1.428370 CGCATCGCCGGAAATTCTGA 61.428 55.000 5.05 0.00 0.00 3.27
221 222 0.732571 GCATCGCCGGAAATTCTGAA 59.267 50.000 5.05 0.00 0.00 3.02
222 223 1.132262 GCATCGCCGGAAATTCTGAAA 59.868 47.619 5.05 0.00 0.00 2.69
223 224 2.223572 GCATCGCCGGAAATTCTGAAAT 60.224 45.455 5.05 0.00 0.00 2.17
224 225 3.003275 GCATCGCCGGAAATTCTGAAATA 59.997 43.478 5.05 0.00 0.00 1.40
225 226 4.497340 GCATCGCCGGAAATTCTGAAATAA 60.497 41.667 5.05 0.00 0.00 1.40
226 227 5.577835 CATCGCCGGAAATTCTGAAATAAA 58.422 37.500 5.05 0.00 0.00 1.40
227 228 5.828299 TCGCCGGAAATTCTGAAATAAAT 57.172 34.783 5.05 0.00 0.00 1.40
228 229 5.816919 TCGCCGGAAATTCTGAAATAAATC 58.183 37.500 5.05 0.00 0.00 2.17
229 230 4.976116 CGCCGGAAATTCTGAAATAAATCC 59.024 41.667 5.05 0.00 0.00 3.01
230 231 5.449862 CGCCGGAAATTCTGAAATAAATCCA 60.450 40.000 5.05 0.00 0.00 3.41
231 232 5.979517 GCCGGAAATTCTGAAATAAATCCAG 59.020 40.000 5.05 0.00 0.00 3.86
232 233 6.183360 GCCGGAAATTCTGAAATAAATCCAGA 60.183 38.462 5.05 0.00 35.38 3.86
233 234 7.630513 GCCGGAAATTCTGAAATAAATCCAGAA 60.631 37.037 5.05 0.00 46.76 3.02
234 235 8.250332 CCGGAAATTCTGAAATAAATCCAGAAA 58.750 33.333 2.89 0.00 46.12 2.52
235 236 9.807649 CGGAAATTCTGAAATAAATCCAGAAAT 57.192 29.630 0.00 0.00 46.12 2.17
242 243 8.777413 TCTGAAATAAATCCAGAAATAGATGCG 58.223 33.333 0.00 0.00 34.38 4.73
243 244 8.675705 TGAAATAAATCCAGAAATAGATGCGA 57.324 30.769 0.00 0.00 0.00 5.10
244 245 8.777413 TGAAATAAATCCAGAAATAGATGCGAG 58.223 33.333 0.00 0.00 0.00 5.03
245 246 6.734104 ATAAATCCAGAAATAGATGCGAGC 57.266 37.500 0.00 0.00 0.00 5.03
246 247 3.758755 ATCCAGAAATAGATGCGAGCA 57.241 42.857 0.00 0.00 0.00 4.26
247 248 2.826428 TCCAGAAATAGATGCGAGCAC 58.174 47.619 0.00 0.00 0.00 4.40
248 249 1.869767 CCAGAAATAGATGCGAGCACC 59.130 52.381 0.00 0.00 0.00 5.01
249 250 2.554142 CAGAAATAGATGCGAGCACCA 58.446 47.619 0.00 0.00 0.00 4.17
250 251 2.543012 CAGAAATAGATGCGAGCACCAG 59.457 50.000 0.00 0.00 0.00 4.00
251 252 1.869767 GAAATAGATGCGAGCACCAGG 59.130 52.381 0.00 0.00 0.00 4.45
252 253 1.123077 AATAGATGCGAGCACCAGGA 58.877 50.000 0.00 0.00 0.00 3.86
253 254 1.346062 ATAGATGCGAGCACCAGGAT 58.654 50.000 0.00 0.00 0.00 3.24
254 255 1.123077 TAGATGCGAGCACCAGGATT 58.877 50.000 0.00 0.00 0.00 3.01
255 256 0.254178 AGATGCGAGCACCAGGATTT 59.746 50.000 0.00 0.00 0.00 2.17
256 257 1.486310 AGATGCGAGCACCAGGATTTA 59.514 47.619 0.00 0.00 0.00 1.40
257 258 2.092968 AGATGCGAGCACCAGGATTTAA 60.093 45.455 0.00 0.00 0.00 1.52
258 259 2.192664 TGCGAGCACCAGGATTTAAA 57.807 45.000 0.00 0.00 0.00 1.52
259 260 1.810151 TGCGAGCACCAGGATTTAAAC 59.190 47.619 0.00 0.00 0.00 2.01
260 261 1.132453 GCGAGCACCAGGATTTAAACC 59.868 52.381 0.00 0.00 0.00 3.27
261 262 1.743394 CGAGCACCAGGATTTAAACCC 59.257 52.381 0.00 0.00 0.00 4.11
262 263 2.618045 CGAGCACCAGGATTTAAACCCT 60.618 50.000 0.00 0.00 0.00 4.34
263 264 3.370103 CGAGCACCAGGATTTAAACCCTA 60.370 47.826 0.00 0.00 0.00 3.53
264 265 4.200092 GAGCACCAGGATTTAAACCCTAG 58.800 47.826 0.00 0.00 0.00 3.02
265 266 3.591977 AGCACCAGGATTTAAACCCTAGT 59.408 43.478 0.00 0.00 0.00 2.57
266 267 3.694566 GCACCAGGATTTAAACCCTAGTG 59.305 47.826 19.76 19.76 42.50 2.74
267 268 4.270008 CACCAGGATTTAAACCCTAGTGG 58.730 47.826 17.09 10.81 38.14 4.00
292 293 3.180891 GGATACCACAGTGCCTCTAAC 57.819 52.381 0.00 0.00 0.00 2.34
293 294 2.158943 GGATACCACAGTGCCTCTAACC 60.159 54.545 0.00 0.00 0.00 2.85
294 295 2.018355 TACCACAGTGCCTCTAACCA 57.982 50.000 0.00 0.00 0.00 3.67
295 296 1.362224 ACCACAGTGCCTCTAACCAT 58.638 50.000 0.00 0.00 0.00 3.55
296 297 1.279271 ACCACAGTGCCTCTAACCATC 59.721 52.381 0.00 0.00 0.00 3.51
297 298 1.407437 CCACAGTGCCTCTAACCATCC 60.407 57.143 0.00 0.00 0.00 3.51
298 299 1.278985 CACAGTGCCTCTAACCATCCA 59.721 52.381 0.00 0.00 0.00 3.41
299 300 1.985159 ACAGTGCCTCTAACCATCCAA 59.015 47.619 0.00 0.00 0.00 3.53
300 301 2.026822 ACAGTGCCTCTAACCATCCAAG 60.027 50.000 0.00 0.00 0.00 3.61
301 302 2.026822 CAGTGCCTCTAACCATCCAAGT 60.027 50.000 0.00 0.00 0.00 3.16
302 303 2.644798 AGTGCCTCTAACCATCCAAGTT 59.355 45.455 0.00 0.00 0.00 2.66
303 304 3.010420 GTGCCTCTAACCATCCAAGTTC 58.990 50.000 0.00 0.00 0.00 3.01
304 305 2.280628 GCCTCTAACCATCCAAGTTCG 58.719 52.381 0.00 0.00 0.00 3.95
305 306 2.280628 CCTCTAACCATCCAAGTTCGC 58.719 52.381 0.00 0.00 0.00 4.70
306 307 2.354704 CCTCTAACCATCCAAGTTCGCA 60.355 50.000 0.00 0.00 0.00 5.10
307 308 3.334691 CTCTAACCATCCAAGTTCGCAA 58.665 45.455 0.00 0.00 0.00 4.85
308 309 3.071479 TCTAACCATCCAAGTTCGCAAC 58.929 45.455 0.00 0.00 0.00 4.17
309 310 0.591170 AACCATCCAAGTTCGCAACG 59.409 50.000 0.00 0.00 36.23 4.10
310 311 1.234615 ACCATCCAAGTTCGCAACGG 61.235 55.000 0.00 0.00 36.23 4.44
311 312 1.501741 CATCCAAGTTCGCAACGGG 59.498 57.895 0.00 0.00 36.23 5.28
312 313 1.072505 ATCCAAGTTCGCAACGGGT 59.927 52.632 0.00 0.00 36.23 5.28
313 314 0.953960 ATCCAAGTTCGCAACGGGTC 60.954 55.000 0.00 0.00 36.23 4.46
314 315 1.597027 CCAAGTTCGCAACGGGTCT 60.597 57.895 0.00 0.00 36.23 3.85
315 316 1.164041 CCAAGTTCGCAACGGGTCTT 61.164 55.000 0.00 0.00 36.23 3.01
316 317 0.661020 CAAGTTCGCAACGGGTCTTT 59.339 50.000 0.00 0.00 36.23 2.52
317 318 1.064952 CAAGTTCGCAACGGGTCTTTT 59.935 47.619 0.00 0.00 36.23 2.27
318 319 2.243602 AGTTCGCAACGGGTCTTTTA 57.756 45.000 0.00 0.00 36.23 1.52
319 320 2.563702 AGTTCGCAACGGGTCTTTTAA 58.436 42.857 0.00 0.00 36.23 1.52
320 321 3.143728 AGTTCGCAACGGGTCTTTTAAT 58.856 40.909 0.00 0.00 36.23 1.40
321 322 3.566742 AGTTCGCAACGGGTCTTTTAATT 59.433 39.130 0.00 0.00 36.23 1.40
322 323 4.037089 AGTTCGCAACGGGTCTTTTAATTT 59.963 37.500 0.00 0.00 36.23 1.82
323 324 4.571372 TCGCAACGGGTCTTTTAATTTT 57.429 36.364 0.00 0.00 0.00 1.82
324 325 4.934515 TCGCAACGGGTCTTTTAATTTTT 58.065 34.783 0.00 0.00 0.00 1.94
349 350 6.895607 TTTCAAACGAAGGTTTTCAAATCC 57.104 33.333 0.00 0.00 43.69 3.01
350 351 5.584253 TCAAACGAAGGTTTTCAAATCCA 57.416 34.783 0.00 0.00 43.69 3.41
351 352 5.587289 TCAAACGAAGGTTTTCAAATCCAG 58.413 37.500 0.00 0.00 43.69 3.86
352 353 3.643159 ACGAAGGTTTTCAAATCCAGC 57.357 42.857 0.00 0.00 32.67 4.85
353 354 3.222603 ACGAAGGTTTTCAAATCCAGCT 58.777 40.909 0.00 0.00 32.67 4.24
354 355 3.004734 ACGAAGGTTTTCAAATCCAGCTG 59.995 43.478 6.78 6.78 32.67 4.24
355 356 3.612479 CGAAGGTTTTCAAATCCAGCTGG 60.612 47.826 27.87 27.87 32.67 4.85
356 357 2.962859 AGGTTTTCAAATCCAGCTGGT 58.037 42.857 31.58 16.68 36.34 4.00
357 358 2.893489 AGGTTTTCAAATCCAGCTGGTC 59.107 45.455 31.58 11.55 36.34 4.02
358 359 2.893489 GGTTTTCAAATCCAGCTGGTCT 59.107 45.455 31.58 17.82 36.34 3.85
359 360 4.079253 GGTTTTCAAATCCAGCTGGTCTA 58.921 43.478 31.58 14.17 36.34 2.59
360 361 4.082733 GGTTTTCAAATCCAGCTGGTCTAC 60.083 45.833 31.58 17.48 36.34 2.59
361 362 2.672961 TCAAATCCAGCTGGTCTACG 57.327 50.000 31.58 17.25 36.34 3.51
362 363 1.009829 CAAATCCAGCTGGTCTACGC 58.990 55.000 31.58 0.00 36.34 4.42
363 364 0.460284 AAATCCAGCTGGTCTACGCG 60.460 55.000 31.58 3.53 36.34 6.01
364 365 2.298158 AATCCAGCTGGTCTACGCGG 62.298 60.000 31.58 3.36 36.34 6.46
381 382 4.842091 GCGACGGACCGCGTATGT 62.842 66.667 24.39 0.00 45.86 2.29
382 383 2.708865 CGACGGACCGCGTATGTA 59.291 61.111 15.39 0.00 0.00 2.29
383 384 1.652329 CGACGGACCGCGTATGTAC 60.652 63.158 15.39 0.00 0.00 2.90
411 412 2.175878 AAGATGTCAGGTGTCAGCAC 57.824 50.000 4.59 0.00 44.53 4.40
440 441 0.521291 TGTGGATTGCGTTGCTAAGC 59.479 50.000 0.00 0.00 0.00 3.09
441 442 0.521242 GTGGATTGCGTTGCTAAGCG 60.521 55.000 1.54 0.00 35.87 4.68
442 443 1.062525 GGATTGCGTTGCTAAGCGG 59.937 57.895 1.54 0.00 35.87 5.52
443 444 1.062525 GATTGCGTTGCTAAGCGGG 59.937 57.895 1.54 0.00 35.87 6.13
444 445 2.322999 GATTGCGTTGCTAAGCGGGG 62.323 60.000 1.54 0.00 35.87 5.73
445 446 3.835790 TTGCGTTGCTAAGCGGGGT 62.836 57.895 1.54 0.00 35.87 4.95
446 447 2.125431 GCGTTGCTAAGCGGGGTA 60.125 61.111 0.00 0.00 0.00 3.69
447 448 2.458610 GCGTTGCTAAGCGGGGTAC 61.459 63.158 0.00 0.00 0.00 3.34
449 450 0.390735 CGTTGCTAAGCGGGGTACTT 60.391 55.000 0.00 0.00 0.00 2.24
450 451 1.135024 CGTTGCTAAGCGGGGTACTTA 60.135 52.381 0.00 0.00 0.00 2.24
451 452 2.482490 CGTTGCTAAGCGGGGTACTTAT 60.482 50.000 0.00 0.00 0.00 1.73
452 453 3.538591 GTTGCTAAGCGGGGTACTTATT 58.461 45.455 0.00 0.00 0.00 1.40
453 454 3.918294 TGCTAAGCGGGGTACTTATTT 57.082 42.857 0.00 0.00 0.00 1.40
454 455 5.118286 GTTGCTAAGCGGGGTACTTATTTA 58.882 41.667 0.00 0.00 0.00 1.40
455 456 5.356291 TGCTAAGCGGGGTACTTATTTAA 57.644 39.130 0.00 0.00 0.00 1.52
456 457 5.743117 TGCTAAGCGGGGTACTTATTTAAA 58.257 37.500 0.00 0.00 0.00 1.52
457 458 6.179040 TGCTAAGCGGGGTACTTATTTAAAA 58.821 36.000 0.00 0.00 0.00 1.52
458 459 6.658391 TGCTAAGCGGGGTACTTATTTAAAAA 59.342 34.615 0.00 0.00 0.00 1.94
459 460 7.339976 TGCTAAGCGGGGTACTTATTTAAAAAT 59.660 33.333 0.00 0.00 0.00 1.82
460 461 8.192774 GCTAAGCGGGGTACTTATTTAAAAATT 58.807 33.333 0.00 0.00 0.00 1.82
463 464 8.229253 AGCGGGGTACTTATTTAAAAATTAGG 57.771 34.615 6.45 0.00 31.28 2.69
464 465 8.054572 AGCGGGGTACTTATTTAAAAATTAGGA 58.945 33.333 6.45 0.00 31.28 2.94
465 466 8.347771 GCGGGGTACTTATTTAAAAATTAGGAG 58.652 37.037 6.45 0.00 31.28 3.69
466 467 9.399797 CGGGGTACTTATTTAAAAATTAGGAGT 57.600 33.333 6.45 3.84 31.28 3.85
469 470 9.712359 GGTACTTATTTAAAAATTAGGAGTGCG 57.288 33.333 6.45 0.00 31.28 5.34
472 473 8.789762 ACTTATTTAAAAATTAGGAGTGCGTGT 58.210 29.630 6.45 0.00 31.28 4.49
476 477 4.616181 AAAATTAGGAGTGCGTGTATGC 57.384 40.909 0.00 0.00 0.00 3.14
477 478 3.543680 AATTAGGAGTGCGTGTATGCT 57.456 42.857 0.00 0.00 35.36 3.79
478 479 3.543680 ATTAGGAGTGCGTGTATGCTT 57.456 42.857 0.00 0.00 35.36 3.91
479 480 2.579207 TAGGAGTGCGTGTATGCTTC 57.421 50.000 0.00 0.00 35.36 3.86
480 481 0.108138 AGGAGTGCGTGTATGCTTCC 60.108 55.000 10.32 10.32 38.66 3.46
481 482 0.391130 GGAGTGCGTGTATGCTTCCA 60.391 55.000 12.30 0.00 38.42 3.53
482 483 1.002366 GAGTGCGTGTATGCTTCCAG 58.998 55.000 0.00 0.00 35.36 3.86
483 484 0.608130 AGTGCGTGTATGCTTCCAGA 59.392 50.000 0.00 0.00 35.36 3.86
484 485 1.002366 GTGCGTGTATGCTTCCAGAG 58.998 55.000 0.00 0.00 35.36 3.35
485 486 0.894835 TGCGTGTATGCTTCCAGAGA 59.105 50.000 0.00 0.00 35.36 3.10
486 487 1.275010 TGCGTGTATGCTTCCAGAGAA 59.725 47.619 0.00 0.00 35.36 2.87
487 488 2.093500 TGCGTGTATGCTTCCAGAGAAT 60.093 45.455 0.00 0.00 35.36 2.40
488 489 2.939103 GCGTGTATGCTTCCAGAGAATT 59.061 45.455 0.00 0.00 0.00 2.17
489 490 3.375299 GCGTGTATGCTTCCAGAGAATTT 59.625 43.478 0.00 0.00 0.00 1.82
490 491 4.142600 GCGTGTATGCTTCCAGAGAATTTT 60.143 41.667 0.00 0.00 0.00 1.82
491 492 5.563842 CGTGTATGCTTCCAGAGAATTTTC 58.436 41.667 0.00 0.00 0.00 2.29
492 493 5.352569 CGTGTATGCTTCCAGAGAATTTTCT 59.647 40.000 0.00 0.00 41.00 2.52
493 494 6.128172 CGTGTATGCTTCCAGAGAATTTTCTT 60.128 38.462 0.00 0.00 37.73 2.52
494 495 7.573843 CGTGTATGCTTCCAGAGAATTTTCTTT 60.574 37.037 0.00 0.00 37.73 2.52
495 496 8.084684 GTGTATGCTTCCAGAGAATTTTCTTTT 58.915 33.333 0.00 0.00 37.73 2.27
496 497 8.641541 TGTATGCTTCCAGAGAATTTTCTTTTT 58.358 29.630 0.00 0.00 37.73 1.94
526 527 8.581253 AGGGTTCCAGAGAAATTAATTAACTG 57.419 34.615 15.83 15.83 32.58 3.16
527 528 7.615757 AGGGTTCCAGAGAAATTAATTAACTGG 59.384 37.037 25.66 25.66 41.66 4.00
533 534 8.406297 CCAGAGAAATTAATTAACTGGTTAGCC 58.594 37.037 24.50 0.00 38.51 3.93
534 535 9.178758 CAGAGAAATTAATTAACTGGTTAGCCT 57.821 33.333 0.01 0.00 35.27 4.58
545 546 1.301401 GTTAGCCTGCGTGTGACCA 60.301 57.895 0.00 0.00 0.00 4.02
563 564 2.108514 ATCGTGGCATGTTCCAGCG 61.109 57.895 6.60 1.88 36.67 5.18
569 570 3.044059 GCATGTTCCAGCGACTGCC 62.044 63.158 0.00 0.00 44.31 4.85
576 577 1.078918 CCAGCGACTGCCAGAATGA 60.079 57.895 0.00 0.00 44.31 2.57
583 584 4.274459 AGCGACTGCCAGAATGATATTTTC 59.726 41.667 0.00 0.00 44.31 2.29
585 586 4.023707 CGACTGCCAGAATGATATTTTCCC 60.024 45.833 0.00 0.00 39.69 3.97
590 591 3.254166 CCAGAATGATATTTTCCCTGGCG 59.746 47.826 0.00 0.00 39.69 5.69
605 606 3.275143 CCTGGCGTGTGGTTCATATTAA 58.725 45.455 0.00 0.00 0.00 1.40
607 608 5.060506 CCTGGCGTGTGGTTCATATTAATA 58.939 41.667 0.00 0.00 0.00 0.98
608 609 5.179368 CCTGGCGTGTGGTTCATATTAATAG 59.821 44.000 1.02 0.00 0.00 1.73
612 613 7.121463 TGGCGTGTGGTTCATATTAATAGTTTT 59.879 33.333 1.02 0.00 0.00 2.43
613 614 7.642586 GGCGTGTGGTTCATATTAATAGTTTTC 59.357 37.037 1.02 0.00 0.00 2.29
660 669 9.101971 GAAAAACTTGTTTTTGACAATGTTGAC 57.898 29.630 23.42 6.10 46.58 3.18
704 716 3.136077 ACACATCCTGCTCTGCTGATATT 59.864 43.478 0.00 0.00 0.00 1.28
708 720 5.938710 ACATCCTGCTCTGCTGATATTTATG 59.061 40.000 0.00 0.00 0.00 1.90
710 722 4.070009 CCTGCTCTGCTGATATTTATGCA 58.930 43.478 0.00 0.00 0.00 3.96
775 2174 5.514274 TCCCATTGAGTGAAAACAAACTC 57.486 39.130 0.00 0.00 42.61 3.01
780 2179 5.728351 TTGAGTGAAAACAAACTCGGTAG 57.272 39.130 0.00 0.00 44.75 3.18
859 2258 0.949105 CAACAGCCCGTGTGGAGTAC 60.949 60.000 0.00 0.00 40.26 2.73
872 2271 5.035443 GTGTGGAGTACGTATGATGAAGAC 58.965 45.833 0.00 0.00 0.00 3.01
927 2328 2.691771 CCAGAAGCAGCAGCAGCAG 61.692 63.158 12.92 0.00 45.49 4.24
928 2329 1.966972 CAGAAGCAGCAGCAGCAGT 60.967 57.895 12.92 0.00 45.49 4.40
929 2330 1.966972 AGAAGCAGCAGCAGCAGTG 60.967 57.895 12.92 0.00 45.49 3.66
973 2376 2.194388 ATCACACAGCCTGCAGGAGG 62.194 60.000 37.21 27.13 46.13 4.30
974 2377 2.527624 ACACAGCCTGCAGGAGGA 60.528 61.111 37.21 0.00 46.33 3.71
995 2398 3.295973 AGCAGGAAGACTTCTAGCTAGG 58.704 50.000 23.93 8.12 37.75 3.02
997 2400 3.702045 GCAGGAAGACTTCTAGCTAGGAA 59.298 47.826 20.58 12.07 0.00 3.36
1079 2482 4.442454 GGCCCACCCTACCAAGGC 62.442 72.222 0.00 0.00 42.14 4.35
1086 2489 3.083997 CCTACCAAGGCGAGGGCT 61.084 66.667 3.39 0.00 41.24 5.19
1105 2508 3.716006 CTGCGGTTGTGAGGTGCG 61.716 66.667 0.00 0.00 0.00 5.34
1129 2532 4.035102 GGCCCACCCTGTCAGGAC 62.035 72.222 21.23 4.09 37.67 3.85
1353 2760 7.935755 CCATCTTGATCTACTAATTCCATGTGT 59.064 37.037 0.00 0.00 0.00 3.72
1389 2802 6.751514 TTTGTTCTTGCTAGTTCAGTTCAA 57.248 33.333 0.00 0.00 0.00 2.69
1520 2949 1.258445 GGAGCCCGATCATCCCGTAT 61.258 60.000 0.00 0.00 0.00 3.06
1578 3007 4.464069 ACTGGAGCTACTGACAGAAATC 57.536 45.455 10.23 1.65 35.08 2.17
1606 3037 5.529581 TTCAGAACATAGTCAGTCACACA 57.470 39.130 0.00 0.00 0.00 3.72
1620 3051 5.067544 TCAGTCACACATTCTGATGCAAAAA 59.932 36.000 0.00 0.00 36.72 1.94
1621 3052 5.174398 CAGTCACACATTCTGATGCAAAAAC 59.826 40.000 0.00 0.00 36.72 2.43
1623 3054 4.099113 TCACACATTCTGATGCAAAAACCA 59.901 37.500 0.00 0.00 36.72 3.67
1624 3055 4.209703 CACACATTCTGATGCAAAAACCAC 59.790 41.667 0.00 0.00 36.72 4.16
1660 3091 2.027745 ACCAGTGTCGATTGCTGATCTT 60.028 45.455 13.13 0.00 32.30 2.40
1666 3097 1.019673 CGATTGCTGATCTTGGTGGG 58.980 55.000 0.00 0.00 32.30 4.61
1764 3195 1.777272 AGGTGAGCCCTCAAGAAACTT 59.223 47.619 0.00 0.00 40.71 2.66
1783 3214 8.090831 AGAAACTTTTCTTTCCTGGCATATTTC 58.909 33.333 0.00 0.00 44.70 2.17
1799 3234 2.088950 TTTCGTAGCCTGGTAACTGC 57.911 50.000 0.00 0.00 35.61 4.40
1821 3256 1.136891 TCACGGCACTGACTATCATGG 59.863 52.381 0.00 0.00 0.00 3.66
1823 3258 1.137086 ACGGCACTGACTATCATGGTC 59.863 52.381 0.00 0.00 0.00 4.02
1832 3267 2.945668 GACTATCATGGTCAAACTGCCC 59.054 50.000 0.00 0.00 34.23 5.36
2013 3448 2.274437 CCACCTCACATCTTCATCACG 58.726 52.381 0.00 0.00 0.00 4.35
2034 3469 1.040646 CTACGGCTGCTGGGAATAGA 58.959 55.000 13.87 0.00 0.00 1.98
2074 3513 4.483476 ACTGCAAACGGTGAAATAACTC 57.517 40.909 0.00 0.00 32.77 3.01
2140 3579 9.528018 TTTCATCTTGAAAAGGAATTGTGTAAC 57.472 29.630 0.37 0.00 46.24 2.50
2401 4965 3.526931 TCAGATCTAAAGGTGCCTTCG 57.473 47.619 3.70 0.00 34.84 3.79
2402 4966 2.832129 TCAGATCTAAAGGTGCCTTCGT 59.168 45.455 3.70 0.00 34.84 3.85
2404 4968 2.832129 AGATCTAAAGGTGCCTTCGTGA 59.168 45.455 3.70 3.94 34.84 4.35
2453 5017 3.980775 ACACATAAATGCACGTTTGAAGC 59.019 39.130 0.00 0.00 0.00 3.86
2511 5075 3.877559 TGACTGGCAATGAACTGATAGG 58.122 45.455 0.00 0.00 0.00 2.57
2588 5160 9.218525 TCTTACATCTAGATCAGGGAAAGAATT 57.781 33.333 1.03 0.00 0.00 2.17
2605 5177 2.355010 ATTATGCCCTTGCCTGACTC 57.645 50.000 0.00 0.00 36.33 3.36
2628 5200 2.424246 TGTGAACGCGTCATGGAGTATA 59.576 45.455 14.44 0.00 38.90 1.47
2672 5284 4.082463 GGCATCACTAGAGCTCCAGTATAC 60.082 50.000 14.70 5.09 0.00 1.47
2803 5447 6.573664 ATGAGCAGCAACTACAACATAAAA 57.426 33.333 0.00 0.00 0.00 1.52
2835 5485 4.881273 GTGTATGCATAACAACCTCATGGA 59.119 41.667 8.28 0.00 37.04 3.41
2873 5523 8.961294 AAAATCTCAATCAGAGTCATAGAAGG 57.039 34.615 0.00 0.00 44.98 3.46
2943 5593 3.754965 TCACAGGCAAGCTAGAACAAAT 58.245 40.909 0.00 0.00 0.00 2.32
2968 5619 0.253207 AACTCTAGGGTGGGAAGGGG 60.253 60.000 0.00 0.00 0.00 4.79
2969 5620 2.042261 TCTAGGGTGGGAAGGGGC 59.958 66.667 0.00 0.00 0.00 5.80
3037 5688 9.930693 CTTTTTCTGTACTTAGGTCTTCATACT 57.069 33.333 0.00 0.00 0.00 2.12
3067 5718 6.867662 ACTTTTCATGTAGTTGTCAGAAGG 57.132 37.500 0.00 0.00 0.00 3.46
3081 5732 5.684704 TGTCAGAAGGTTGAAGAGACAAAT 58.315 37.500 0.00 0.00 32.26 2.32
3082 5733 6.826668 TGTCAGAAGGTTGAAGAGACAAATA 58.173 36.000 0.00 0.00 32.26 1.40
3141 5847 3.116096 AGAGGACAGTGGCATACCTTA 57.884 47.619 0.00 0.00 36.63 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.631062 TCGAAGAGAGTTGCCCAGTTAA 59.369 45.455 0.00 0.00 0.00 2.01
2 3 1.048601 TCGAAGAGAGTTGCCCAGTT 58.951 50.000 0.00 0.00 0.00 3.16
3 4 1.205893 GATCGAAGAGAGTTGCCCAGT 59.794 52.381 0.00 0.00 43.63 4.00
5 6 0.537188 GGATCGAAGAGAGTTGCCCA 59.463 55.000 0.00 0.00 43.63 5.36
6 7 0.827368 AGGATCGAAGAGAGTTGCCC 59.173 55.000 0.00 0.00 43.63 5.36
7 8 2.682155 AAGGATCGAAGAGAGTTGCC 57.318 50.000 0.00 0.00 43.63 4.52
28 29 9.010029 GTCACTTAGGTCCTGATTCATTAAAAA 57.990 33.333 0.00 0.00 0.00 1.94
29 30 7.610305 GGTCACTTAGGTCCTGATTCATTAAAA 59.390 37.037 0.00 0.00 0.00 1.52
30 31 7.110155 GGTCACTTAGGTCCTGATTCATTAAA 58.890 38.462 0.00 0.00 0.00 1.52
31 32 6.629515 CGGTCACTTAGGTCCTGATTCATTAA 60.630 42.308 0.00 0.00 0.00 1.40
32 33 5.163447 CGGTCACTTAGGTCCTGATTCATTA 60.163 44.000 0.00 0.00 0.00 1.90
33 34 4.383118 CGGTCACTTAGGTCCTGATTCATT 60.383 45.833 0.00 0.00 0.00 2.57
34 35 3.133003 CGGTCACTTAGGTCCTGATTCAT 59.867 47.826 0.00 0.00 0.00 2.57
35 36 2.496070 CGGTCACTTAGGTCCTGATTCA 59.504 50.000 0.00 0.00 0.00 2.57
36 37 2.496470 ACGGTCACTTAGGTCCTGATTC 59.504 50.000 0.00 0.00 0.00 2.52
37 38 2.233922 CACGGTCACTTAGGTCCTGATT 59.766 50.000 0.00 0.00 0.00 2.57
38 39 1.825474 CACGGTCACTTAGGTCCTGAT 59.175 52.381 0.00 0.00 0.00 2.90
39 40 1.254026 CACGGTCACTTAGGTCCTGA 58.746 55.000 0.00 0.00 0.00 3.86
40 41 0.966920 ACACGGTCACTTAGGTCCTG 59.033 55.000 0.00 0.00 0.00 3.86
41 42 1.713297 AACACGGTCACTTAGGTCCT 58.287 50.000 0.00 0.00 0.00 3.85
42 43 2.224113 TGAAACACGGTCACTTAGGTCC 60.224 50.000 0.00 0.00 0.00 4.46
43 44 3.057734 CTGAAACACGGTCACTTAGGTC 58.942 50.000 0.00 0.00 0.00 3.85
44 45 2.696707 TCTGAAACACGGTCACTTAGGT 59.303 45.455 0.00 0.00 0.00 3.08
45 46 3.380479 TCTGAAACACGGTCACTTAGG 57.620 47.619 0.00 0.00 0.00 2.69
46 47 5.728351 TTTTCTGAAACACGGTCACTTAG 57.272 39.130 1.58 0.00 0.00 2.18
96 97 5.297278 AGTTGCATCTGTACCGTGTTAAAAA 59.703 36.000 0.00 0.00 0.00 1.94
97 98 4.817464 AGTTGCATCTGTACCGTGTTAAAA 59.183 37.500 0.00 0.00 0.00 1.52
98 99 4.382291 AGTTGCATCTGTACCGTGTTAAA 58.618 39.130 0.00 0.00 0.00 1.52
99 100 3.997762 AGTTGCATCTGTACCGTGTTAA 58.002 40.909 0.00 0.00 0.00 2.01
100 101 3.671008 AGTTGCATCTGTACCGTGTTA 57.329 42.857 0.00 0.00 0.00 2.41
101 102 2.543777 AGTTGCATCTGTACCGTGTT 57.456 45.000 0.00 0.00 0.00 3.32
102 103 3.585862 CTTAGTTGCATCTGTACCGTGT 58.414 45.455 7.57 0.00 0.00 4.49
103 104 2.348666 GCTTAGTTGCATCTGTACCGTG 59.651 50.000 7.57 0.00 0.00 4.94
104 105 2.618053 GCTTAGTTGCATCTGTACCGT 58.382 47.619 7.57 0.00 0.00 4.83
105 106 1.933853 GGCTTAGTTGCATCTGTACCG 59.066 52.381 7.57 0.00 34.04 4.02
106 107 1.933853 CGGCTTAGTTGCATCTGTACC 59.066 52.381 7.57 4.93 34.04 3.34
107 108 1.933853 CCGGCTTAGTTGCATCTGTAC 59.066 52.381 7.57 0.00 34.04 2.90
108 109 1.742411 GCCGGCTTAGTTGCATCTGTA 60.742 52.381 22.15 0.00 34.04 2.74
109 110 1.026718 GCCGGCTTAGTTGCATCTGT 61.027 55.000 22.15 0.00 34.04 3.41
110 111 1.026182 TGCCGGCTTAGTTGCATCTG 61.026 55.000 29.70 0.00 34.04 2.90
111 112 0.107017 ATGCCGGCTTAGTTGCATCT 60.107 50.000 29.70 2.28 40.21 2.90
112 113 1.593196 TATGCCGGCTTAGTTGCATC 58.407 50.000 29.70 0.00 43.01 3.91
113 114 2.154462 GATATGCCGGCTTAGTTGCAT 58.846 47.619 29.70 12.57 45.67 3.96
114 115 1.134250 TGATATGCCGGCTTAGTTGCA 60.134 47.619 29.70 17.91 38.23 4.08
115 116 1.593196 TGATATGCCGGCTTAGTTGC 58.407 50.000 29.70 15.73 0.00 4.17
116 117 3.668447 AGATGATATGCCGGCTTAGTTG 58.332 45.455 29.70 0.00 0.00 3.16
117 118 4.357918 AAGATGATATGCCGGCTTAGTT 57.642 40.909 29.70 11.71 0.00 2.24
118 119 5.483685 TTAAGATGATATGCCGGCTTAGT 57.516 39.130 29.70 15.20 0.00 2.24
119 120 6.801539 TTTTAAGATGATATGCCGGCTTAG 57.198 37.500 29.70 0.00 0.00 2.18
120 121 7.759489 AATTTTAAGATGATATGCCGGCTTA 57.241 32.000 29.70 25.95 0.00 3.09
121 122 6.655078 AATTTTAAGATGATATGCCGGCTT 57.345 33.333 29.70 24.47 0.00 4.35
122 123 6.655078 AAATTTTAAGATGATATGCCGGCT 57.345 33.333 29.70 15.76 0.00 5.52
123 124 8.243426 TCATAAATTTTAAGATGATATGCCGGC 58.757 33.333 22.73 22.73 0.00 6.13
136 137 9.651718 GCCTACGATGACTTCATAAATTTTAAG 57.348 33.333 0.00 1.31 36.57 1.85
137 138 9.168451 TGCCTACGATGACTTCATAAATTTTAA 57.832 29.630 0.00 0.00 36.57 1.52
138 139 8.725405 TGCCTACGATGACTTCATAAATTTTA 57.275 30.769 0.00 0.00 36.57 1.52
139 140 7.624360 TGCCTACGATGACTTCATAAATTTT 57.376 32.000 0.00 0.00 36.57 1.82
140 141 7.807977 ATGCCTACGATGACTTCATAAATTT 57.192 32.000 0.00 0.00 36.57 1.82
141 142 7.807977 AATGCCTACGATGACTTCATAAATT 57.192 32.000 0.00 0.00 36.57 1.82
142 143 7.498900 TGAAATGCCTACGATGACTTCATAAAT 59.501 33.333 0.00 0.00 36.57 1.40
143 144 6.821160 TGAAATGCCTACGATGACTTCATAAA 59.179 34.615 0.00 0.00 36.57 1.40
144 145 6.345298 TGAAATGCCTACGATGACTTCATAA 58.655 36.000 0.00 0.00 36.57 1.90
145 146 5.912892 TGAAATGCCTACGATGACTTCATA 58.087 37.500 0.00 0.00 36.57 2.15
146 147 4.769688 TGAAATGCCTACGATGACTTCAT 58.230 39.130 0.00 0.00 39.70 2.57
147 148 4.200838 TGAAATGCCTACGATGACTTCA 57.799 40.909 0.00 0.00 0.00 3.02
148 149 4.084849 CGATGAAATGCCTACGATGACTTC 60.085 45.833 0.00 0.00 0.00 3.01
149 150 3.804325 CGATGAAATGCCTACGATGACTT 59.196 43.478 0.00 0.00 0.00 3.01
150 151 3.181475 ACGATGAAATGCCTACGATGACT 60.181 43.478 0.00 0.00 0.00 3.41
151 152 3.123804 ACGATGAAATGCCTACGATGAC 58.876 45.455 0.00 0.00 0.00 3.06
152 153 3.381045 GACGATGAAATGCCTACGATGA 58.619 45.455 0.00 0.00 0.00 2.92
153 154 2.153817 CGACGATGAAATGCCTACGATG 59.846 50.000 0.00 0.00 0.00 3.84
154 155 2.034179 TCGACGATGAAATGCCTACGAT 59.966 45.455 0.00 0.00 0.00 3.73
155 156 1.402613 TCGACGATGAAATGCCTACGA 59.597 47.619 0.00 0.00 0.00 3.43
156 157 1.517276 GTCGACGATGAAATGCCTACG 59.483 52.381 0.00 0.00 0.00 3.51
157 158 1.517276 CGTCGACGATGAAATGCCTAC 59.483 52.381 33.35 0.00 43.02 3.18
158 159 1.535226 CCGTCGACGATGAAATGCCTA 60.535 52.381 37.65 0.00 43.02 3.93
159 160 0.806102 CCGTCGACGATGAAATGCCT 60.806 55.000 37.65 0.00 43.02 4.75
160 161 1.636340 CCGTCGACGATGAAATGCC 59.364 57.895 37.65 0.00 43.02 4.40
161 162 0.804544 TCCCGTCGACGATGAAATGC 60.805 55.000 37.65 0.00 43.02 3.56
162 163 1.323534 GTTCCCGTCGACGATGAAATG 59.676 52.381 37.65 19.12 43.02 2.32
163 164 1.067425 TGTTCCCGTCGACGATGAAAT 60.067 47.619 37.65 0.00 43.02 2.17
164 165 0.314618 TGTTCCCGTCGACGATGAAA 59.685 50.000 37.65 22.92 43.02 2.69
165 166 0.528924 ATGTTCCCGTCGACGATGAA 59.471 50.000 37.65 31.68 43.02 2.57
166 167 0.528924 AATGTTCCCGTCGACGATGA 59.471 50.000 37.65 28.41 43.02 2.92
167 168 1.323534 GAAATGTTCCCGTCGACGATG 59.676 52.381 37.65 26.71 43.02 3.84
168 169 1.636988 GAAATGTTCCCGTCGACGAT 58.363 50.000 37.65 20.44 43.02 3.73
169 170 0.388907 GGAAATGTTCCCGTCGACGA 60.389 55.000 37.65 18.99 44.30 4.20
170 171 2.075761 GGAAATGTTCCCGTCGACG 58.924 57.895 30.33 30.33 44.30 5.12
179 180 3.119352 GCATTCAGTGGGAGGAAATGTTC 60.119 47.826 0.00 0.00 0.00 3.18
180 181 2.827921 GCATTCAGTGGGAGGAAATGTT 59.172 45.455 0.00 0.00 0.00 2.71
181 182 2.450476 GCATTCAGTGGGAGGAAATGT 58.550 47.619 0.00 0.00 0.00 2.71
182 183 1.402968 CGCATTCAGTGGGAGGAAATG 59.597 52.381 0.00 0.00 43.02 2.32
183 184 1.755179 CGCATTCAGTGGGAGGAAAT 58.245 50.000 0.00 0.00 43.02 2.17
184 185 0.960364 GCGCATTCAGTGGGAGGAAA 60.960 55.000 0.30 0.00 43.02 3.13
185 186 1.377202 GCGCATTCAGTGGGAGGAA 60.377 57.895 0.30 0.00 43.02 3.36
186 187 1.913951 ATGCGCATTCAGTGGGAGGA 61.914 55.000 19.28 0.00 43.02 3.71
187 188 1.442526 GATGCGCATTCAGTGGGAGG 61.443 60.000 26.12 0.00 43.02 4.30
188 189 1.769098 CGATGCGCATTCAGTGGGAG 61.769 60.000 26.12 4.12 43.02 4.30
189 190 1.815003 CGATGCGCATTCAGTGGGA 60.815 57.895 26.12 0.00 43.02 4.37
190 191 2.711311 CGATGCGCATTCAGTGGG 59.289 61.111 26.12 4.47 43.21 4.61
201 202 1.010797 CAGAATTTCCGGCGATGCG 60.011 57.895 9.30 0.00 0.00 4.73
202 203 0.732571 TTCAGAATTTCCGGCGATGC 59.267 50.000 9.30 0.00 0.00 3.91
203 204 3.698029 ATTTCAGAATTTCCGGCGATG 57.302 42.857 9.30 0.00 0.00 3.84
204 205 5.828299 TTTATTTCAGAATTTCCGGCGAT 57.172 34.783 9.30 0.00 0.00 4.58
205 206 5.220970 GGATTTATTTCAGAATTTCCGGCGA 60.221 40.000 9.30 0.00 0.00 5.54
206 207 4.976116 GGATTTATTTCAGAATTTCCGGCG 59.024 41.667 0.00 0.00 0.00 6.46
207 208 5.901552 TGGATTTATTTCAGAATTTCCGGC 58.098 37.500 0.00 0.00 0.00 6.13
208 209 7.333528 TCTGGATTTATTTCAGAATTTCCGG 57.666 36.000 0.00 0.00 34.97 5.14
209 210 9.807649 ATTTCTGGATTTATTTCAGAATTTCCG 57.192 29.630 5.93 0.00 44.00 4.30
216 217 8.777413 CGCATCTATTTCTGGATTTATTTCAGA 58.223 33.333 0.00 0.00 35.95 3.27
217 218 8.777413 TCGCATCTATTTCTGGATTTATTTCAG 58.223 33.333 0.00 0.00 0.00 3.02
218 219 8.675705 TCGCATCTATTTCTGGATTTATTTCA 57.324 30.769 0.00 0.00 0.00 2.69
219 220 7.748241 GCTCGCATCTATTTCTGGATTTATTTC 59.252 37.037 0.00 0.00 0.00 2.17
220 221 7.229306 TGCTCGCATCTATTTCTGGATTTATTT 59.771 33.333 0.00 0.00 0.00 1.40
221 222 6.712095 TGCTCGCATCTATTTCTGGATTTATT 59.288 34.615 0.00 0.00 0.00 1.40
222 223 6.148480 GTGCTCGCATCTATTTCTGGATTTAT 59.852 38.462 0.00 0.00 0.00 1.40
223 224 5.466728 GTGCTCGCATCTATTTCTGGATTTA 59.533 40.000 0.00 0.00 0.00 1.40
224 225 4.274459 GTGCTCGCATCTATTTCTGGATTT 59.726 41.667 0.00 0.00 0.00 2.17
225 226 3.812053 GTGCTCGCATCTATTTCTGGATT 59.188 43.478 0.00 0.00 0.00 3.01
226 227 3.397482 GTGCTCGCATCTATTTCTGGAT 58.603 45.455 0.00 0.00 0.00 3.41
227 228 2.483714 GGTGCTCGCATCTATTTCTGGA 60.484 50.000 0.00 0.00 0.00 3.86
228 229 1.869767 GGTGCTCGCATCTATTTCTGG 59.130 52.381 0.00 0.00 0.00 3.86
229 230 2.543012 CTGGTGCTCGCATCTATTTCTG 59.457 50.000 3.60 0.00 0.00 3.02
230 231 2.484417 CCTGGTGCTCGCATCTATTTCT 60.484 50.000 3.60 0.00 0.00 2.52
231 232 1.869767 CCTGGTGCTCGCATCTATTTC 59.130 52.381 3.60 0.00 0.00 2.17
232 233 1.486310 TCCTGGTGCTCGCATCTATTT 59.514 47.619 3.60 0.00 0.00 1.40
233 234 1.123077 TCCTGGTGCTCGCATCTATT 58.877 50.000 3.60 0.00 0.00 1.73
234 235 1.346062 ATCCTGGTGCTCGCATCTAT 58.654 50.000 3.60 0.00 0.00 1.98
235 236 1.123077 AATCCTGGTGCTCGCATCTA 58.877 50.000 3.60 0.00 0.00 1.98
236 237 0.254178 AAATCCTGGTGCTCGCATCT 59.746 50.000 3.60 0.00 0.00 2.90
237 238 1.953559 TAAATCCTGGTGCTCGCATC 58.046 50.000 0.00 0.00 0.00 3.91
238 239 2.418368 TTAAATCCTGGTGCTCGCAT 57.582 45.000 0.00 0.00 0.00 4.73
239 240 1.810151 GTTTAAATCCTGGTGCTCGCA 59.190 47.619 0.00 0.00 0.00 5.10
240 241 1.132453 GGTTTAAATCCTGGTGCTCGC 59.868 52.381 0.00 0.00 0.00 5.03
241 242 1.743394 GGGTTTAAATCCTGGTGCTCG 59.257 52.381 10.45 0.00 0.00 5.03
242 243 3.087370 AGGGTTTAAATCCTGGTGCTC 57.913 47.619 19.53 0.00 38.36 4.26
243 244 4.236527 CTAGGGTTTAAATCCTGGTGCT 57.763 45.455 27.27 5.18 40.54 4.40
260 261 0.399949 TGGTATCCCAGCCCACTAGG 60.400 60.000 0.00 0.00 35.17 3.02
261 262 0.759346 GTGGTATCCCAGCCCACTAG 59.241 60.000 0.00 0.00 44.21 2.57
262 263 2.925078 GTGGTATCCCAGCCCACTA 58.075 57.895 0.00 0.00 44.21 2.74
263 264 3.741325 GTGGTATCCCAGCCCACT 58.259 61.111 0.00 0.00 44.21 4.00
265 266 1.229820 ACTGTGGTATCCCAGCCCA 60.230 57.895 0.00 0.00 42.94 5.36
266 267 1.224592 CACTGTGGTATCCCAGCCC 59.775 63.158 0.00 0.00 42.94 5.19
267 268 1.452108 GCACTGTGGTATCCCAGCC 60.452 63.158 10.21 0.00 42.94 4.85
268 269 1.452108 GGCACTGTGGTATCCCAGC 60.452 63.158 10.21 0.00 42.94 4.85
269 270 0.179000 GAGGCACTGTGGTATCCCAG 59.821 60.000 10.21 0.00 40.06 4.45
270 271 0.252696 AGAGGCACTGTGGTATCCCA 60.253 55.000 10.21 0.00 41.55 4.37
271 272 1.789523 TAGAGGCACTGTGGTATCCC 58.210 55.000 10.21 1.56 41.55 3.85
272 273 2.158943 GGTTAGAGGCACTGTGGTATCC 60.159 54.545 10.21 1.95 41.55 2.59
273 274 2.500098 TGGTTAGAGGCACTGTGGTATC 59.500 50.000 10.21 0.00 41.55 2.24
274 275 2.546899 TGGTTAGAGGCACTGTGGTAT 58.453 47.619 10.21 0.00 41.55 2.73
275 276 2.018355 TGGTTAGAGGCACTGTGGTA 57.982 50.000 10.21 0.00 41.55 3.25
276 277 1.279271 GATGGTTAGAGGCACTGTGGT 59.721 52.381 10.21 0.00 41.55 4.16
277 278 1.407437 GGATGGTTAGAGGCACTGTGG 60.407 57.143 10.21 0.00 41.55 4.17
278 279 1.278985 TGGATGGTTAGAGGCACTGTG 59.721 52.381 2.76 2.76 41.55 3.66
279 280 1.656587 TGGATGGTTAGAGGCACTGT 58.343 50.000 0.00 0.00 41.55 3.55
280 281 2.026822 ACTTGGATGGTTAGAGGCACTG 60.027 50.000 0.00 0.00 41.55 3.66
282 283 2.789409 ACTTGGATGGTTAGAGGCAC 57.211 50.000 0.00 0.00 0.00 5.01
283 284 2.354704 CGAACTTGGATGGTTAGAGGCA 60.355 50.000 0.00 0.00 0.00 4.75
284 285 2.280628 CGAACTTGGATGGTTAGAGGC 58.719 52.381 0.00 0.00 0.00 4.70
285 286 2.280628 GCGAACTTGGATGGTTAGAGG 58.719 52.381 0.00 0.00 0.00 3.69
286 287 2.972625 TGCGAACTTGGATGGTTAGAG 58.027 47.619 0.00 0.00 0.00 2.43
287 288 3.071479 GTTGCGAACTTGGATGGTTAGA 58.929 45.455 0.00 0.00 0.00 2.10
288 289 2.159707 CGTTGCGAACTTGGATGGTTAG 60.160 50.000 0.00 0.00 0.00 2.34
289 290 1.801771 CGTTGCGAACTTGGATGGTTA 59.198 47.619 0.00 0.00 0.00 2.85
290 291 0.591170 CGTTGCGAACTTGGATGGTT 59.409 50.000 0.00 0.00 0.00 3.67
291 292 1.234615 CCGTTGCGAACTTGGATGGT 61.235 55.000 0.00 0.00 0.00 3.55
292 293 1.501741 CCGTTGCGAACTTGGATGG 59.498 57.895 0.00 0.00 0.00 3.51
293 294 1.234615 ACCCGTTGCGAACTTGGATG 61.235 55.000 0.00 0.00 0.00 3.51
294 295 0.953960 GACCCGTTGCGAACTTGGAT 60.954 55.000 0.00 0.00 0.00 3.41
295 296 1.595929 GACCCGTTGCGAACTTGGA 60.596 57.895 0.00 0.00 0.00 3.53
296 297 1.164041 AAGACCCGTTGCGAACTTGG 61.164 55.000 0.00 0.00 0.00 3.61
297 298 0.661020 AAAGACCCGTTGCGAACTTG 59.339 50.000 0.00 0.00 0.00 3.16
298 299 1.385528 AAAAGACCCGTTGCGAACTT 58.614 45.000 0.00 0.00 0.00 2.66
299 300 2.243602 TAAAAGACCCGTTGCGAACT 57.756 45.000 0.00 0.00 0.00 3.01
300 301 3.547649 ATTAAAAGACCCGTTGCGAAC 57.452 42.857 0.00 0.00 0.00 3.95
301 302 4.571372 AAATTAAAAGACCCGTTGCGAA 57.429 36.364 0.00 0.00 0.00 4.70
302 303 4.571372 AAAATTAAAAGACCCGTTGCGA 57.429 36.364 0.00 0.00 0.00 5.10
324 325 7.387948 TGGATTTGAAAACCTTCGTTTGAAAAA 59.612 29.630 5.80 0.00 41.42 1.94
325 326 6.874134 TGGATTTGAAAACCTTCGTTTGAAAA 59.126 30.769 5.80 0.00 41.42 2.29
326 327 6.398918 TGGATTTGAAAACCTTCGTTTGAAA 58.601 32.000 5.80 0.00 41.42 2.69
327 328 5.967088 TGGATTTGAAAACCTTCGTTTGAA 58.033 33.333 5.80 0.00 41.42 2.69
328 329 5.584253 TGGATTTGAAAACCTTCGTTTGA 57.416 34.783 5.80 0.00 41.42 2.69
329 330 4.209080 GCTGGATTTGAAAACCTTCGTTTG 59.791 41.667 5.80 0.00 41.42 2.93
330 331 4.099419 AGCTGGATTTGAAAACCTTCGTTT 59.901 37.500 5.80 0.00 44.20 3.60
331 332 3.636764 AGCTGGATTTGAAAACCTTCGTT 59.363 39.130 5.80 0.00 33.94 3.85
332 333 3.004734 CAGCTGGATTTGAAAACCTTCGT 59.995 43.478 5.57 0.00 33.94 3.85
333 334 3.568538 CAGCTGGATTTGAAAACCTTCG 58.431 45.455 5.57 0.00 33.94 3.79
334 335 3.321968 ACCAGCTGGATTTGAAAACCTTC 59.678 43.478 39.19 0.00 38.94 3.46
335 336 3.308401 ACCAGCTGGATTTGAAAACCTT 58.692 40.909 39.19 8.95 38.94 3.50
336 337 2.893489 GACCAGCTGGATTTGAAAACCT 59.107 45.455 39.19 12.10 38.94 3.50
337 338 2.893489 AGACCAGCTGGATTTGAAAACC 59.107 45.455 39.19 13.05 38.94 3.27
338 339 4.378459 CGTAGACCAGCTGGATTTGAAAAC 60.378 45.833 39.19 20.63 38.94 2.43
339 340 3.751175 CGTAGACCAGCTGGATTTGAAAA 59.249 43.478 39.19 11.88 38.94 2.29
340 341 3.334691 CGTAGACCAGCTGGATTTGAAA 58.665 45.455 39.19 13.44 38.94 2.69
341 342 2.935238 GCGTAGACCAGCTGGATTTGAA 60.935 50.000 39.19 14.51 38.94 2.69
342 343 1.405526 GCGTAGACCAGCTGGATTTGA 60.406 52.381 39.19 15.79 38.94 2.69
343 344 1.009829 GCGTAGACCAGCTGGATTTG 58.990 55.000 39.19 22.90 38.94 2.32
344 345 0.460284 CGCGTAGACCAGCTGGATTT 60.460 55.000 39.19 23.67 38.94 2.17
345 346 1.141881 CGCGTAGACCAGCTGGATT 59.858 57.895 39.19 26.10 38.94 3.01
346 347 2.786495 CCGCGTAGACCAGCTGGAT 61.786 63.158 39.19 26.96 38.94 3.41
347 348 3.449227 CCGCGTAGACCAGCTGGA 61.449 66.667 39.19 14.84 38.94 3.86
376 377 4.781071 ACATCTTAGCTACGCGTACATAC 58.219 43.478 16.41 5.32 0.00 2.39
377 378 4.512571 TGACATCTTAGCTACGCGTACATA 59.487 41.667 16.41 8.21 0.00 2.29
378 379 3.314357 TGACATCTTAGCTACGCGTACAT 59.686 43.478 16.41 9.27 0.00 2.29
379 380 2.679336 TGACATCTTAGCTACGCGTACA 59.321 45.455 16.41 4.78 0.00 2.90
380 381 3.289911 CTGACATCTTAGCTACGCGTAC 58.710 50.000 16.41 12.42 0.00 3.67
381 382 2.289820 CCTGACATCTTAGCTACGCGTA 59.710 50.000 19.40 19.40 0.00 4.42
382 383 1.065701 CCTGACATCTTAGCTACGCGT 59.934 52.381 19.17 19.17 0.00 6.01
383 384 1.065701 ACCTGACATCTTAGCTACGCG 59.934 52.381 3.53 3.53 0.00 6.01
384 385 2.159226 ACACCTGACATCTTAGCTACGC 60.159 50.000 0.00 0.00 0.00 4.42
385 386 3.128764 TGACACCTGACATCTTAGCTACG 59.871 47.826 0.00 0.00 0.00 3.51
386 387 4.677584 CTGACACCTGACATCTTAGCTAC 58.322 47.826 0.00 0.00 0.00 3.58
387 388 3.131223 GCTGACACCTGACATCTTAGCTA 59.869 47.826 0.00 0.00 0.00 3.32
388 389 2.093764 GCTGACACCTGACATCTTAGCT 60.094 50.000 0.00 0.00 0.00 3.32
389 390 2.275318 GCTGACACCTGACATCTTAGC 58.725 52.381 0.00 0.00 0.00 3.09
390 391 3.257393 GTGCTGACACCTGACATCTTAG 58.743 50.000 0.00 0.00 41.21 2.18
391 392 2.352715 CGTGCTGACACCTGACATCTTA 60.353 50.000 0.00 0.00 44.40 2.10
392 393 1.606480 CGTGCTGACACCTGACATCTT 60.606 52.381 0.00 0.00 44.40 2.40
393 394 0.037882 CGTGCTGACACCTGACATCT 60.038 55.000 0.00 0.00 44.40 2.90
394 395 0.038251 TCGTGCTGACACCTGACATC 60.038 55.000 0.00 0.00 44.40 3.06
395 396 0.610174 ATCGTGCTGACACCTGACAT 59.390 50.000 0.00 0.00 44.40 3.06
396 397 1.253100 TATCGTGCTGACACCTGACA 58.747 50.000 0.00 0.00 44.40 3.58
397 398 2.196749 CATATCGTGCTGACACCTGAC 58.803 52.381 0.00 0.00 44.40 3.51
398 399 1.136891 CCATATCGTGCTGACACCTGA 59.863 52.381 0.00 0.00 44.40 3.86
399 400 1.575244 CCATATCGTGCTGACACCTG 58.425 55.000 0.00 0.00 44.40 4.00
400 401 0.179073 GCCATATCGTGCTGACACCT 60.179 55.000 0.00 0.00 44.40 4.00
401 402 0.461870 TGCCATATCGTGCTGACACC 60.462 55.000 0.00 0.00 44.40 4.16
402 403 1.262417 CATGCCATATCGTGCTGACAC 59.738 52.381 0.00 0.00 43.76 3.67
411 412 1.135888 CGCAATCCACATGCCATATCG 60.136 52.381 0.00 0.00 40.72 2.92
440 441 9.399797 ACTCCTAATTTTTAAATAAGTACCCCG 57.600 33.333 0.00 0.00 0.00 5.73
443 444 9.712359 CGCACTCCTAATTTTTAAATAAGTACC 57.288 33.333 0.00 0.00 0.00 3.34
446 447 8.789762 ACACGCACTCCTAATTTTTAAATAAGT 58.210 29.630 0.00 0.00 0.00 2.24
450 451 7.700656 GCATACACGCACTCCTAATTTTTAAAT 59.299 33.333 0.00 0.00 0.00 1.40
451 452 7.024768 GCATACACGCACTCCTAATTTTTAAA 58.975 34.615 0.00 0.00 0.00 1.52
452 453 6.373216 AGCATACACGCACTCCTAATTTTTAA 59.627 34.615 0.00 0.00 0.00 1.52
453 454 5.878116 AGCATACACGCACTCCTAATTTTTA 59.122 36.000 0.00 0.00 0.00 1.52
454 455 4.700213 AGCATACACGCACTCCTAATTTTT 59.300 37.500 0.00 0.00 0.00 1.94
455 456 4.261801 AGCATACACGCACTCCTAATTTT 58.738 39.130 0.00 0.00 0.00 1.82
456 457 3.873910 AGCATACACGCACTCCTAATTT 58.126 40.909 0.00 0.00 0.00 1.82
457 458 3.543680 AGCATACACGCACTCCTAATT 57.456 42.857 0.00 0.00 0.00 1.40
458 459 3.458189 GAAGCATACACGCACTCCTAAT 58.542 45.455 0.00 0.00 0.00 1.73
459 460 2.418197 GGAAGCATACACGCACTCCTAA 60.418 50.000 0.00 0.00 34.77 2.69
460 461 1.136305 GGAAGCATACACGCACTCCTA 59.864 52.381 0.00 0.00 34.77 2.94
461 462 0.108138 GGAAGCATACACGCACTCCT 60.108 55.000 0.00 0.00 34.77 3.69
462 463 0.391130 TGGAAGCATACACGCACTCC 60.391 55.000 0.00 0.00 36.93 3.85
463 464 1.002366 CTGGAAGCATACACGCACTC 58.998 55.000 0.00 0.00 0.00 3.51
464 465 0.608130 TCTGGAAGCATACACGCACT 59.392 50.000 0.00 0.00 0.00 4.40
465 466 1.002366 CTCTGGAAGCATACACGCAC 58.998 55.000 0.00 0.00 0.00 5.34
466 467 0.894835 TCTCTGGAAGCATACACGCA 59.105 50.000 0.00 0.00 0.00 5.24
467 468 2.010145 TTCTCTGGAAGCATACACGC 57.990 50.000 0.00 0.00 0.00 5.34
468 469 5.352569 AGAAAATTCTCTGGAAGCATACACG 59.647 40.000 0.00 0.00 34.70 4.49
469 470 6.749923 AGAAAATTCTCTGGAAGCATACAC 57.250 37.500 0.00 0.00 34.70 2.90
470 471 7.765695 AAAGAAAATTCTCTGGAAGCATACA 57.234 32.000 0.00 0.00 36.28 2.29
500 501 9.681062 CAGTTAATTAATTTCTCTGGAACCCTA 57.319 33.333 5.91 0.00 0.00 3.53
501 502 7.615757 CCAGTTAATTAATTTCTCTGGAACCCT 59.384 37.037 25.21 0.00 42.16 4.34
502 503 7.396339 ACCAGTTAATTAATTTCTCTGGAACCC 59.604 37.037 30.42 2.84 42.16 4.11
503 504 8.349568 ACCAGTTAATTAATTTCTCTGGAACC 57.650 34.615 30.42 3.19 42.16 3.62
512 513 6.691388 CGCAGGCTAACCAGTTAATTAATTTC 59.309 38.462 5.91 0.88 39.06 2.17
513 514 6.152154 ACGCAGGCTAACCAGTTAATTAATTT 59.848 34.615 5.91 0.00 39.06 1.82
524 525 1.005037 TCACACGCAGGCTAACCAG 60.005 57.895 0.00 0.00 39.06 4.00
525 526 1.301401 GTCACACGCAGGCTAACCA 60.301 57.895 0.00 0.00 39.06 3.67
526 527 2.033194 GGTCACACGCAGGCTAACC 61.033 63.158 0.00 0.00 0.00 2.85
527 528 0.673644 ATGGTCACACGCAGGCTAAC 60.674 55.000 0.00 0.00 0.00 2.34
533 534 2.382746 CCACGATGGTCACACGCAG 61.383 63.158 0.00 0.00 31.35 5.18
534 535 2.356913 CCACGATGGTCACACGCA 60.357 61.111 0.00 0.00 31.35 5.24
545 546 2.108514 CGCTGGAACATGCCACGAT 61.109 57.895 0.00 0.00 38.20 3.73
563 564 5.009410 CAGGGAAAATATCATTCTGGCAGTC 59.991 44.000 15.27 0.00 0.00 3.51
569 570 3.885297 ACGCCAGGGAAAATATCATTCTG 59.115 43.478 0.00 0.00 0.00 3.02
576 577 1.005450 ACCACACGCCAGGGAAAATAT 59.995 47.619 0.00 0.00 0.00 1.28
583 584 0.107214 ATATGAACCACACGCCAGGG 60.107 55.000 0.00 0.00 0.00 4.45
585 586 5.758296 ACTATTAATATGAACCACACGCCAG 59.242 40.000 0.00 0.00 0.00 4.85
644 649 4.158764 ACTTCCCGTCAACATTGTCAAAAA 59.841 37.500 0.00 0.00 0.00 1.94
719 731 8.846943 TTTACTTTTGCTGATATCTGAGTGAA 57.153 30.769 13.33 7.71 0.00 3.18
720 732 8.846943 TTTTACTTTTGCTGATATCTGAGTGA 57.153 30.769 13.33 2.50 0.00 3.41
748 2136 6.477053 TTGTTTTCACTCAATGGGAAATCA 57.523 33.333 0.00 0.00 46.21 2.57
749 2137 6.986231 AGTTTGTTTTCACTCAATGGGAAATC 59.014 34.615 0.00 0.00 46.21 2.17
751 2139 6.293004 AGTTTGTTTTCACTCAATGGGAAA 57.707 33.333 0.00 0.00 45.41 3.13
752 2140 5.449862 CGAGTTTGTTTTCACTCAATGGGAA 60.450 40.000 0.00 0.00 36.08 3.97
756 2144 4.920376 ACCGAGTTTGTTTTCACTCAATG 58.080 39.130 0.00 0.00 0.00 2.82
763 2151 4.124238 CACCTCTACCGAGTTTGTTTTCA 58.876 43.478 0.00 0.00 35.43 2.69
775 2174 2.233922 ACCAAACATCTCACCTCTACCG 59.766 50.000 0.00 0.00 0.00 4.02
780 2179 3.685139 TGAGACCAAACATCTCACCTC 57.315 47.619 0.59 0.00 46.01 3.85
842 2241 2.927580 CGTACTCCACACGGGCTGT 61.928 63.158 0.00 0.00 35.78 4.40
850 2249 4.201881 CGTCTTCATCATACGTACTCCACA 60.202 45.833 0.00 0.00 32.16 4.17
851 2250 4.034858 TCGTCTTCATCATACGTACTCCAC 59.965 45.833 0.00 0.00 37.83 4.02
852 2251 4.193865 TCGTCTTCATCATACGTACTCCA 58.806 43.478 0.00 0.00 37.83 3.86
859 2258 3.060978 TCGGTTCGTCTTCATCATACG 57.939 47.619 0.00 0.00 37.96 3.06
872 2271 7.061752 AGAATTATCTCTTTTGTTCGGTTCG 57.938 36.000 0.00 0.00 0.00 3.95
927 2328 0.455410 TGCCTGTTGTTCTTGTGCAC 59.545 50.000 10.75 10.75 0.00 4.57
928 2329 0.740149 CTGCCTGTTGTTCTTGTGCA 59.260 50.000 0.00 0.00 0.00 4.57
929 2330 1.002033 CTCTGCCTGTTGTTCTTGTGC 60.002 52.381 0.00 0.00 0.00 4.57
930 2331 1.002033 GCTCTGCCTGTTGTTCTTGTG 60.002 52.381 0.00 0.00 0.00 3.33
973 2376 3.317993 CCTAGCTAGAAGTCTTCCTGCTC 59.682 52.174 24.32 6.54 38.82 4.26
974 2377 3.053245 TCCTAGCTAGAAGTCTTCCTGCT 60.053 47.826 22.70 24.16 40.29 4.24
995 2398 0.455005 GGCCAAGCTGCTCATCTTTC 59.545 55.000 1.00 0.00 0.00 2.62
997 2400 1.379576 GGGCCAAGCTGCTCATCTT 60.380 57.895 4.39 0.00 0.00 2.40
1129 2532 2.694628 CTCTCTCCTCCTCTTCATGTGG 59.305 54.545 0.00 0.00 0.00 4.17
1203 2606 2.328099 CGAAACTCCACAGGCTGCC 61.328 63.158 15.89 11.65 0.00 4.85
1209 2612 0.588252 CAAGCACCGAAACTCCACAG 59.412 55.000 0.00 0.00 0.00 3.66
1353 2760 7.817418 AGCAAGAACAAAAACATCCTACTAA 57.183 32.000 0.00 0.00 0.00 2.24
1389 2802 7.555554 CACCATGAGAATATGAAAGACTTCCTT 59.444 37.037 0.00 0.00 36.47 3.36
1520 2949 3.009473 AGCCATCAGGAACTTTGAAGCTA 59.991 43.478 0.00 0.00 36.83 3.32
1578 3007 4.573900 ACTGACTATGTTCTGAAAGCTGG 58.426 43.478 0.00 0.00 0.00 4.85
1606 3037 4.037923 AGAACGTGGTTTTTGCATCAGAAT 59.962 37.500 0.00 0.00 0.00 2.40
1620 3051 3.070446 TGGTGTCTAAATCAGAACGTGGT 59.930 43.478 0.00 0.00 34.17 4.16
1621 3052 3.659786 TGGTGTCTAAATCAGAACGTGG 58.340 45.455 0.00 0.00 34.17 4.94
1623 3054 4.202223 ACACTGGTGTCTAAATCAGAACGT 60.202 41.667 0.01 0.00 40.24 3.99
1624 3055 4.307432 ACACTGGTGTCTAAATCAGAACG 58.693 43.478 0.01 0.00 40.24 3.95
1660 3091 2.050350 GTCGATCTCCGTCCCACCA 61.050 63.158 0.00 0.00 39.75 4.17
1666 3097 2.024871 CGCAGGTCGATCTCCGTC 59.975 66.667 0.00 0.00 41.67 4.79
1764 3195 5.065988 GCTACGAAATATGCCAGGAAAGAAA 59.934 40.000 0.00 0.00 0.00 2.52
1783 3214 0.179108 GAGGCAGTTACCAGGCTACG 60.179 60.000 1.80 0.00 41.09 3.51
1807 3242 4.093998 GCAGTTTGACCATGATAGTCAGTG 59.906 45.833 0.00 0.62 44.60 3.66
1821 3256 1.168714 GGTCATCTGGGCAGTTTGAC 58.831 55.000 2.36 2.36 39.54 3.18
1823 3258 1.542915 CAAGGTCATCTGGGCAGTTTG 59.457 52.381 0.00 0.00 0.00 2.93
1832 3267 2.014335 TGCATCGTCAAGGTCATCTG 57.986 50.000 0.00 0.00 0.00 2.90
2013 3448 2.040009 TATTCCCAGCAGCCGTAGCC 62.040 60.000 0.00 0.00 41.25 3.93
2034 3469 3.155501 AGTTACGCTGAACAGGTAGAGT 58.844 45.455 3.99 0.00 0.00 3.24
2074 3513 9.784531 AAATCAACACCATATAGTGATAAGGAG 57.215 33.333 8.35 0.00 40.34 3.69
2140 3579 2.170166 TCCATTGTAGCCCTGCAAAAG 58.830 47.619 3.02 0.25 38.59 2.27
2324 3768 9.844790 CATACAATGTTCAATTTCTTCAGCTAA 57.155 29.630 0.00 0.00 0.00 3.09
2386 4950 1.337823 GCTCACGAAGGCACCTTTAGA 60.338 52.381 2.89 1.90 36.26 2.10
2401 4965 3.621268 TGGAAGTTGTTATATGCGCTCAC 59.379 43.478 9.73 0.00 0.00 3.51
2402 4966 3.867857 TGGAAGTTGTTATATGCGCTCA 58.132 40.909 9.73 0.00 0.00 4.26
2404 4968 3.206150 CCTGGAAGTTGTTATATGCGCT 58.794 45.455 9.73 0.00 0.00 5.92
2511 5075 6.591834 AGTGAAACAACTCTACATGTATCAGC 59.408 38.462 5.91 0.97 41.43 4.26
2588 5160 1.264749 ACGAGTCAGGCAAGGGCATA 61.265 55.000 0.00 0.00 43.71 3.14
2628 5200 5.105392 TGCCTTGAAAGTTGAAATCACACTT 60.105 36.000 5.65 5.65 32.61 3.16
2672 5284 2.278026 TGCAGCTACATACTGTCACG 57.722 50.000 0.00 0.00 37.47 4.35
2824 5474 6.423182 TCCTTTTAGGTTATCCATGAGGTTG 58.577 40.000 0.00 0.00 36.53 3.77
2943 5593 5.028131 CCTTCCCACCCTAGAGTTAACTTA 58.972 45.833 10.02 3.81 0.00 2.24
2968 5619 1.450360 AAGATATTGGGAGGGGAGGC 58.550 55.000 0.00 0.00 0.00 4.70
2969 5620 5.663158 TTTTAAGATATTGGGAGGGGAGG 57.337 43.478 0.00 0.00 0.00 4.30
3007 5658 8.044908 TGAAGACCTAAGTACAGAAAAAGTTGT 58.955 33.333 0.00 0.00 0.00 3.32
3008 5659 8.433421 TGAAGACCTAAGTACAGAAAAAGTTG 57.567 34.615 0.00 0.00 0.00 3.16
3016 5667 8.105197 TGTGTAGTATGAAGACCTAAGTACAGA 58.895 37.037 0.00 0.00 0.00 3.41
3037 5688 9.203421 CTGACAACTACATGAAAAGTATGTGTA 57.797 33.333 0.00 0.00 39.03 2.90
3045 5696 6.867662 ACCTTCTGACAACTACATGAAAAG 57.132 37.500 0.00 0.00 0.00 2.27
3081 5732 8.266473 TGACTTGTTAGTTTGGAGGTAACTTTA 58.734 33.333 0.00 0.00 40.98 1.85
3082 5733 7.114095 TGACTTGTTAGTTTGGAGGTAACTTT 58.886 34.615 0.00 0.00 40.98 2.66
3141 5847 4.021229 AGCATTGATGTGATGATGGTGTT 58.979 39.130 0.00 0.00 0.00 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.