Multiple sequence alignment - TraesCS2B01G372600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G372600 chr2B 100.000 5410 0 0 1 5410 531128375 531133784 0.000000e+00 9991
1 TraesCS2B01G372600 chr2B 84.644 1348 156 26 3186 4525 133980530 133981834 0.000000e+00 1295
2 TraesCS2B01G372600 chr2B 88.977 1007 74 13 1037 2043 572706500 572705531 0.000000e+00 1210
3 TraesCS2B01G372600 chr2B 90.625 832 58 4 1066 1893 133979058 133979873 0.000000e+00 1086
4 TraesCS2B01G372600 chr2B 89.153 295 29 2 2826 3120 133980221 133980512 1.110000e-96 364
5 TraesCS2B01G372600 chr2B 87.043 301 36 3 2820 3120 572705304 572705007 2.410000e-88 337
6 TraesCS2B01G372600 chr2A 91.376 2667 135 42 2820 5410 598621958 598619311 0.000000e+00 3563
7 TraesCS2B01G372600 chr2A 96.169 1488 44 9 620 2100 598624087 598622606 0.000000e+00 2420
8 TraesCS2B01G372600 chr2A 93.636 660 30 8 2151 2806 598622594 598621943 0.000000e+00 976
9 TraesCS2B01G372600 chr2A 87.395 238 21 5 1 230 598628564 598628328 1.160000e-66 265
10 TraesCS2B01G372600 chr2D 95.158 2189 68 27 626 2803 450990192 450992353 0.000000e+00 3421
11 TraesCS2B01G372600 chr2D 94.783 1955 94 5 2820 4770 450992341 450994291 0.000000e+00 3038
12 TraesCS2B01G372600 chr2D 87.145 1198 124 22 3187 4373 489369524 489368346 0.000000e+00 1332
13 TraesCS2B01G372600 chr2D 83.333 1494 170 44 3187 4642 488453976 488452524 0.000000e+00 1306
14 TraesCS2B01G372600 chr2D 83.311 1498 167 40 3187 4642 488553348 488551892 0.000000e+00 1304
15 TraesCS2B01G372600 chr2D 84.966 1317 146 27 3186 4495 82144028 82145299 0.000000e+00 1288
16 TraesCS2B01G372600 chr2D 90.564 975 72 7 1066 2040 82142492 82143446 0.000000e+00 1273
17 TraesCS2B01G372600 chr2D 88.580 1007 78 13 1037 2043 488554861 488553892 0.000000e+00 1188
18 TraesCS2B01G372600 chr2D 88.648 969 73 13 1037 2005 489371000 489370069 0.000000e+00 1146
19 TraesCS2B01G372600 chr2D 87.923 679 78 2 3524 4198 450986083 450986761 0.000000e+00 797
20 TraesCS2B01G372600 chr2D 86.083 697 74 16 2098 2784 450983789 450984472 0.000000e+00 728
21 TraesCS2B01G372600 chr2D 90.994 533 41 4 4769 5296 450994363 450994893 0.000000e+00 712
22 TraesCS2B01G372600 chr2D 84.475 657 91 9 2824 3477 450984478 450985126 5.910000e-179 638
23 TraesCS2B01G372600 chr2D 87.143 560 53 6 1484 2043 488455085 488454545 7.700000e-173 617
24 TraesCS2B01G372600 chr2D 93.824 340 20 1 1120 1459 488455409 488455071 1.340000e-140 510
25 TraesCS2B01G372600 chr2D 87.043 301 36 3 2820 3120 489369840 489369543 2.410000e-88 337
26 TraesCS2B01G372600 chr2D 79.722 503 71 18 2629 3120 488454477 488453995 8.680000e-88 335
27 TraesCS2B01G372600 chr2D 87.719 285 31 4 2820 3103 488553665 488553384 4.040000e-86 329
28 TraesCS2B01G372600 chr2D 92.405 158 11 1 4621 4777 450987159 450987316 1.960000e-54 224
29 TraesCS2B01G372600 chr2D 78.632 234 39 7 316 538 140934306 140934073 1.570000e-30 145
30 TraesCS2B01G372600 chr2D 86.667 105 13 1 295 399 645885410 645885513 1.230000e-21 115
31 TraesCS2B01G372600 chr3D 76.331 507 100 19 1385 1881 390658593 390659089 2.500000e-63 254
32 TraesCS2B01G372600 chr3D 76.582 316 49 16 295 598 299692636 299692334 3.380000e-32 150
33 TraesCS2B01G372600 chr3D 87.037 108 14 0 295 402 550654444 550654551 7.360000e-24 122
34 TraesCS2B01G372600 chr4D 81.979 283 39 7 309 580 25461195 25461476 4.210000e-56 230
35 TraesCS2B01G372600 chr1B 78.819 288 48 10 291 572 664609964 664609684 1.200000e-41 182
36 TraesCS2B01G372600 chr7A 78.125 288 50 12 291 572 190014330 190014050 2.590000e-38 171
37 TraesCS2B01G372600 chr4A 78.755 273 43 7 295 552 552857351 552857079 9.320000e-38 169
38 TraesCS2B01G372600 chr4A 82.778 180 26 5 396 572 742969126 742968949 7.260000e-34 156
39 TraesCS2B01G372600 chr3B 78.169 284 49 10 295 572 697080556 697080832 9.320000e-38 169
40 TraesCS2B01G372600 chr3B 77.860 271 48 8 304 568 140436673 140436937 2.020000e-34 158
41 TraesCS2B01G372600 chr6A 77.700 287 51 10 292 572 583043756 583044035 4.340000e-36 163
42 TraesCS2B01G372600 chr7B 77.586 290 50 11 290 572 545728464 545728745 1.560000e-35 161
43 TraesCS2B01G372600 chr7D 77.899 276 48 10 303 572 536119114 536118846 5.610000e-35 159
44 TraesCS2B01G372600 chr5D 80.447 179 27 2 292 462 522136665 522136487 4.400000e-26 130
45 TraesCS2B01G372600 chr5D 80.503 159 22 2 290 440 219512612 219512769 4.430000e-21 113
46 TraesCS2B01G372600 chrUn 83.810 105 16 1 299 402 97362158 97362054 1.240000e-16 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G372600 chr2B 531128375 531133784 5409 False 9991.000000 9991 100.000000 1 5410 1 chr2B.!!$F1 5409
1 TraesCS2B01G372600 chr2B 133979058 133981834 2776 False 915.000000 1295 88.140667 1066 4525 3 chr2B.!!$F2 3459
2 TraesCS2B01G372600 chr2B 572705007 572706500 1493 True 773.500000 1210 88.010000 1037 3120 2 chr2B.!!$R1 2083
3 TraesCS2B01G372600 chr2A 598619311 598624087 4776 True 2319.666667 3563 93.727000 620 5410 3 chr2A.!!$R2 4790
4 TraesCS2B01G372600 chr2D 450983789 450994893 11104 False 1365.428571 3421 90.260143 626 5296 7 chr2D.!!$F3 4670
5 TraesCS2B01G372600 chr2D 82142492 82145299 2807 False 1280.500000 1288 87.765000 1066 4495 2 chr2D.!!$F2 3429
6 TraesCS2B01G372600 chr2D 488551892 488554861 2969 True 940.333333 1304 86.536667 1037 4642 3 chr2D.!!$R3 3605
7 TraesCS2B01G372600 chr2D 489368346 489371000 2654 True 938.333333 1332 87.612000 1037 4373 3 chr2D.!!$R4 3336
8 TraesCS2B01G372600 chr2D 488452524 488455409 2885 True 692.000000 1306 86.005500 1120 4642 4 chr2D.!!$R2 3522

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.032952 GACTTGGCGTGTCTACCACA 59.967 55.000 2.99 0.0 44.78 4.17 F
134 135 0.035915 AGGCCCGCTTTCTCTCTTTC 60.036 55.000 0.00 0.0 0.00 2.62 F
426 427 0.036388 GTGCGTTCAATGGGAGGAGA 60.036 55.000 0.00 0.0 0.00 3.71 F
500 501 0.324614 TGCCAGCAATCTTTCGGAGA 59.675 50.000 0.00 0.0 39.13 3.71 F
530 531 0.591170 AATAAGGTGTGTGTGCGTGC 59.409 50.000 0.00 0.0 0.00 5.34 F
881 6657 0.942884 GTTCCGTCCTTCACACCGTC 60.943 60.000 0.00 0.0 0.00 4.79 F
1266 7048 1.525535 GCAGCTCATCGGCAAGGAT 60.526 57.895 0.00 0.0 35.87 3.24 F
3090 9023 0.329261 TGGCTTCAATGAGGAGGTGG 59.671 55.000 0.00 0.0 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 7345 3.583086 TCGCGCATCTCGACGGAT 61.583 61.111 8.75 0.0 41.67 4.18 R
2092 7902 3.595190 AGGAAGGGCTTGTTTTGTAGT 57.405 42.857 0.00 0.0 0.00 2.73 R
2370 8184 1.404035 ACCAACGTTCAAGAACCTTGC 59.596 47.619 14.94 0.0 36.59 4.01 R
2454 8270 1.831389 GCTGTCGTGTGCGTGTCATT 61.831 55.000 0.00 0.0 39.49 2.57 R
2501 8317 7.783090 ACATAAGTCAATGTGAGATCATGTC 57.217 36.000 0.00 0.0 38.65 3.06 R
3008 8941 4.314121 GCTGAGAATTGAGCCTATACAGG 58.686 47.826 0.00 0.0 45.77 4.00 R
3234 9167 0.536687 TCCCGCTCCTCGATATCGTT 60.537 55.000 23.61 0.0 41.67 3.85 R
5066 11158 0.033920 CTGTACCTGCAGCAGTGTCA 59.966 55.000 21.26 14.3 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.823628 GACTTGGCGTGTCTACCAC 58.176 57.895 2.99 0.00 40.89 4.16
19 20 0.032952 GACTTGGCGTGTCTACCACA 59.967 55.000 2.99 0.00 44.78 4.17
20 21 0.466543 ACTTGGCGTGTCTACCACAA 59.533 50.000 0.00 0.00 44.78 3.33
21 22 1.148310 CTTGGCGTGTCTACCACAAG 58.852 55.000 0.00 0.00 44.78 3.16
26 27 0.240145 CGTGTCTACCACAAGCTCGA 59.760 55.000 0.00 0.00 44.78 4.04
27 28 1.335597 CGTGTCTACCACAAGCTCGAA 60.336 52.381 0.00 0.00 44.78 3.71
28 29 2.059541 GTGTCTACCACAAGCTCGAAC 58.940 52.381 0.00 0.00 43.92 3.95
29 30 1.961394 TGTCTACCACAAGCTCGAACT 59.039 47.619 0.00 0.00 29.30 3.01
30 31 3.057736 GTGTCTACCACAAGCTCGAACTA 60.058 47.826 0.00 0.00 43.92 2.24
31 32 3.057736 TGTCTACCACAAGCTCGAACTAC 60.058 47.826 0.00 0.00 29.30 2.73
32 33 2.490903 TCTACCACAAGCTCGAACTACC 59.509 50.000 0.00 0.00 0.00 3.18
35 36 1.546476 CCACAAGCTCGAACTACCTCT 59.454 52.381 0.00 0.00 0.00 3.69
36 37 2.028930 CCACAAGCTCGAACTACCTCTT 60.029 50.000 0.00 0.00 0.00 2.85
37 38 2.989840 CACAAGCTCGAACTACCTCTTG 59.010 50.000 0.00 0.00 37.51 3.02
38 39 1.996191 CAAGCTCGAACTACCTCTTGC 59.004 52.381 0.00 0.00 0.00 4.01
39 40 1.257743 AGCTCGAACTACCTCTTGCA 58.742 50.000 0.00 0.00 0.00 4.08
40 41 1.827969 AGCTCGAACTACCTCTTGCAT 59.172 47.619 0.00 0.00 0.00 3.96
41 42 1.929836 GCTCGAACTACCTCTTGCATG 59.070 52.381 0.00 0.00 0.00 4.06
42 43 1.929836 CTCGAACTACCTCTTGCATGC 59.070 52.381 11.82 11.82 0.00 4.06
43 44 0.647410 CGAACTACCTCTTGCATGCG 59.353 55.000 14.09 0.00 0.00 4.73
44 45 1.726853 GAACTACCTCTTGCATGCGT 58.273 50.000 14.09 6.81 0.00 5.24
45 46 1.394917 GAACTACCTCTTGCATGCGTG 59.605 52.381 14.09 8.33 0.00 5.34
59 60 1.890876 TGCGTGCATTTGTAGGAGTT 58.109 45.000 0.00 0.00 0.00 3.01
60 61 2.226330 TGCGTGCATTTGTAGGAGTTT 58.774 42.857 0.00 0.00 0.00 2.66
61 62 2.621055 TGCGTGCATTTGTAGGAGTTTT 59.379 40.909 0.00 0.00 0.00 2.43
63 64 4.156182 GCGTGCATTTGTAGGAGTTTTAC 58.844 43.478 0.00 0.00 0.00 2.01
64 65 4.319911 GCGTGCATTTGTAGGAGTTTTACA 60.320 41.667 0.00 0.00 0.00 2.41
65 66 5.144359 CGTGCATTTGTAGGAGTTTTACAC 58.856 41.667 0.00 0.00 31.17 2.90
66 67 5.049680 CGTGCATTTGTAGGAGTTTTACACT 60.050 40.000 0.00 0.00 39.07 3.55
77 78 5.358298 GAGTTTTACACTCGAAAATGGCT 57.642 39.130 0.00 0.00 42.82 4.75
78 79 5.108385 AGTTTTACACTCGAAAATGGCTG 57.892 39.130 0.00 0.00 0.00 4.85
81 82 1.238439 ACACTCGAAAATGGCTGGTG 58.762 50.000 0.00 0.00 0.00 4.17
82 83 1.238439 CACTCGAAAATGGCTGGTGT 58.762 50.000 0.00 0.00 0.00 4.16
83 84 1.069022 CACTCGAAAATGGCTGGTGTG 60.069 52.381 0.00 0.00 0.00 3.82
84 85 1.202758 ACTCGAAAATGGCTGGTGTGA 60.203 47.619 0.00 0.00 0.00 3.58
85 86 2.086869 CTCGAAAATGGCTGGTGTGAT 58.913 47.619 0.00 0.00 0.00 3.06
86 87 3.270027 CTCGAAAATGGCTGGTGTGATA 58.730 45.455 0.00 0.00 0.00 2.15
87 88 3.680490 TCGAAAATGGCTGGTGTGATAA 58.320 40.909 0.00 0.00 0.00 1.75
88 89 4.269183 TCGAAAATGGCTGGTGTGATAAT 58.731 39.130 0.00 0.00 0.00 1.28
89 90 4.335315 TCGAAAATGGCTGGTGTGATAATC 59.665 41.667 0.00 0.00 0.00 1.75
91 92 2.664402 ATGGCTGGTGTGATAATCCC 57.336 50.000 0.00 0.00 0.00 3.85
93 94 1.852309 TGGCTGGTGTGATAATCCCAT 59.148 47.619 0.00 0.00 0.00 4.00
94 95 2.244510 TGGCTGGTGTGATAATCCCATT 59.755 45.455 0.00 0.00 0.00 3.16
95 96 3.299503 GGCTGGTGTGATAATCCCATTT 58.700 45.455 0.00 0.00 0.00 2.32
96 97 3.068590 GGCTGGTGTGATAATCCCATTTG 59.931 47.826 0.00 0.00 0.00 2.32
97 98 3.068590 GCTGGTGTGATAATCCCATTTGG 59.931 47.826 0.00 0.00 0.00 3.28
99 100 2.365293 GGTGTGATAATCCCATTTGGCC 59.635 50.000 0.00 0.00 0.00 5.36
100 101 2.365293 GTGTGATAATCCCATTTGGCCC 59.635 50.000 0.00 0.00 0.00 5.80
101 102 1.613437 GTGATAATCCCATTTGGCCCG 59.387 52.381 0.00 0.00 0.00 6.13
102 103 1.256812 GATAATCCCATTTGGCCCGG 58.743 55.000 0.00 0.00 0.00 5.73
103 104 0.178935 ATAATCCCATTTGGCCCGGG 60.179 55.000 19.09 19.09 41.76 5.73
104 105 1.585651 TAATCCCATTTGGCCCGGGT 61.586 55.000 24.63 0.00 41.12 5.28
105 106 2.469563 AATCCCATTTGGCCCGGGTT 62.470 55.000 24.63 0.18 41.12 4.11
108 109 1.398958 CCCATTTGGCCCGGGTTATG 61.399 60.000 24.63 18.68 35.03 1.90
111 112 1.552792 CATTTGGCCCGGGTTATGTTT 59.447 47.619 24.63 0.00 0.00 2.83
112 113 1.258676 TTTGGCCCGGGTTATGTTTC 58.741 50.000 24.63 1.42 0.00 2.78
113 114 0.961358 TTGGCCCGGGTTATGTTTCG 60.961 55.000 24.63 0.00 0.00 3.46
114 115 1.377594 GGCCCGGGTTATGTTTCGT 60.378 57.895 24.63 0.00 0.00 3.85
116 117 1.292992 GCCCGGGTTATGTTTCGTAG 58.707 55.000 24.63 0.00 0.00 3.51
117 118 1.944032 CCCGGGTTATGTTTCGTAGG 58.056 55.000 14.18 0.00 0.00 3.18
118 119 1.292992 CCGGGTTATGTTTCGTAGGC 58.707 55.000 0.00 0.00 0.00 3.93
119 120 1.292992 CGGGTTATGTTTCGTAGGCC 58.707 55.000 0.00 0.00 0.00 5.19
120 121 1.671979 GGGTTATGTTTCGTAGGCCC 58.328 55.000 0.00 0.00 0.00 5.80
121 122 1.292992 GGTTATGTTTCGTAGGCCCG 58.707 55.000 0.00 0.00 0.00 6.13
122 123 0.654160 GTTATGTTTCGTAGGCCCGC 59.346 55.000 0.00 0.00 0.00 6.13
124 125 0.538118 TATGTTTCGTAGGCCCGCTT 59.462 50.000 0.00 0.00 0.00 4.68
128 129 0.390735 TTTCGTAGGCCCGCTTTCTC 60.391 55.000 0.00 0.00 0.00 2.87
129 130 1.255667 TTCGTAGGCCCGCTTTCTCT 61.256 55.000 0.00 0.00 0.00 3.10
130 131 1.227002 CGTAGGCCCGCTTTCTCTC 60.227 63.158 0.00 0.00 0.00 3.20
131 132 1.668101 CGTAGGCCCGCTTTCTCTCT 61.668 60.000 0.00 0.00 0.00 3.10
133 134 1.066071 GTAGGCCCGCTTTCTCTCTTT 60.066 52.381 0.00 0.00 0.00 2.52
134 135 0.035915 AGGCCCGCTTTCTCTCTTTC 60.036 55.000 0.00 0.00 0.00 2.62
135 136 1.027255 GGCCCGCTTTCTCTCTTTCC 61.027 60.000 0.00 0.00 0.00 3.13
136 137 0.035915 GCCCGCTTTCTCTCTTTCCT 60.036 55.000 0.00 0.00 0.00 3.36
137 138 1.611936 GCCCGCTTTCTCTCTTTCCTT 60.612 52.381 0.00 0.00 0.00 3.36
139 140 3.149981 CCCGCTTTCTCTCTTTCCTTTT 58.850 45.455 0.00 0.00 0.00 2.27
140 141 3.189495 CCCGCTTTCTCTCTTTCCTTTTC 59.811 47.826 0.00 0.00 0.00 2.29
141 142 3.189495 CCGCTTTCTCTCTTTCCTTTTCC 59.811 47.826 0.00 0.00 0.00 3.13
142 143 3.189495 CGCTTTCTCTCTTTCCTTTTCCC 59.811 47.826 0.00 0.00 0.00 3.97
143 144 4.402829 GCTTTCTCTCTTTCCTTTTCCCT 58.597 43.478 0.00 0.00 0.00 4.20
144 145 4.830046 GCTTTCTCTCTTTCCTTTTCCCTT 59.170 41.667 0.00 0.00 0.00 3.95
145 146 5.303078 GCTTTCTCTCTTTCCTTTTCCCTTT 59.697 40.000 0.00 0.00 0.00 3.11
146 147 6.183360 GCTTTCTCTCTTTCCTTTTCCCTTTT 60.183 38.462 0.00 0.00 0.00 2.27
147 148 6.961360 TTCTCTCTTTCCTTTTCCCTTTTC 57.039 37.500 0.00 0.00 0.00 2.29
149 150 6.299922 TCTCTCTTTCCTTTTCCCTTTTCTC 58.700 40.000 0.00 0.00 0.00 2.87
151 152 5.103686 TCTCTTTCCTTTTCCCTTTTCTCCA 60.104 40.000 0.00 0.00 0.00 3.86
152 153 5.715921 TCTTTCCTTTTCCCTTTTCTCCAT 58.284 37.500 0.00 0.00 0.00 3.41
153 154 5.539955 TCTTTCCTTTTCCCTTTTCTCCATG 59.460 40.000 0.00 0.00 0.00 3.66
154 155 4.469469 TCCTTTTCCCTTTTCTCCATGT 57.531 40.909 0.00 0.00 0.00 3.21
155 156 4.814967 TCCTTTTCCCTTTTCTCCATGTT 58.185 39.130 0.00 0.00 0.00 2.71
156 157 4.588528 TCCTTTTCCCTTTTCTCCATGTTG 59.411 41.667 0.00 0.00 0.00 3.33
158 159 5.509670 CCTTTTCCCTTTTCTCCATGTTGTC 60.510 44.000 0.00 0.00 0.00 3.18
159 160 3.874383 TCCCTTTTCTCCATGTTGTCA 57.126 42.857 0.00 0.00 0.00 3.58
160 161 3.486383 TCCCTTTTCTCCATGTTGTCAC 58.514 45.455 0.00 0.00 0.00 3.67
161 162 2.226437 CCCTTTTCTCCATGTTGTCACG 59.774 50.000 0.00 0.00 0.00 4.35
162 163 2.350772 CCTTTTCTCCATGTTGTCACGC 60.351 50.000 0.00 0.00 0.00 5.34
163 164 1.234821 TTTCTCCATGTTGTCACGCC 58.765 50.000 0.00 0.00 0.00 5.68
164 165 0.396435 TTCTCCATGTTGTCACGCCT 59.604 50.000 0.00 0.00 0.00 5.52
165 166 0.396435 TCTCCATGTTGTCACGCCTT 59.604 50.000 0.00 0.00 0.00 4.35
167 168 0.179032 TCCATGTTGTCACGCCTTGT 60.179 50.000 0.00 0.00 0.00 3.16
169 170 1.196808 CCATGTTGTCACGCCTTGTAC 59.803 52.381 0.00 0.00 0.00 2.90
170 171 1.196808 CATGTTGTCACGCCTTGTACC 59.803 52.381 0.00 0.00 0.00 3.34
171 172 0.466543 TGTTGTCACGCCTTGTACCT 59.533 50.000 0.00 0.00 0.00 3.08
172 173 1.134340 TGTTGTCACGCCTTGTACCTT 60.134 47.619 0.00 0.00 0.00 3.50
173 174 1.263217 GTTGTCACGCCTTGTACCTTG 59.737 52.381 0.00 0.00 0.00 3.61
174 175 0.466543 TGTCACGCCTTGTACCTTGT 59.533 50.000 0.00 0.00 0.00 3.16
175 176 1.687660 TGTCACGCCTTGTACCTTGTA 59.312 47.619 0.00 0.00 0.00 2.41
178 179 4.021280 TGTCACGCCTTGTACCTTGTATTA 60.021 41.667 0.00 0.00 0.00 0.98
179 180 4.931002 GTCACGCCTTGTACCTTGTATTAA 59.069 41.667 0.00 0.00 0.00 1.40
180 181 5.409214 GTCACGCCTTGTACCTTGTATTAAA 59.591 40.000 0.00 0.00 0.00 1.52
181 182 5.996513 TCACGCCTTGTACCTTGTATTAAAA 59.003 36.000 0.00 0.00 0.00 1.52
182 183 6.485984 TCACGCCTTGTACCTTGTATTAAAAA 59.514 34.615 0.00 0.00 0.00 1.94
185 186 9.012161 ACGCCTTGTACCTTGTATTAAAAATAA 57.988 29.630 0.00 0.00 0.00 1.40
207 208 9.768662 AATAATCCAATCAATGAATTTACCAGC 57.231 29.630 0.00 0.00 0.00 4.85
208 209 7.427989 AATCCAATCAATGAATTTACCAGCT 57.572 32.000 0.00 0.00 0.00 4.24
209 210 6.855763 TCCAATCAATGAATTTACCAGCTT 57.144 33.333 0.00 0.00 0.00 3.74
210 211 7.243604 TCCAATCAATGAATTTACCAGCTTT 57.756 32.000 0.00 0.00 0.00 3.51
211 212 7.322664 TCCAATCAATGAATTTACCAGCTTTC 58.677 34.615 0.00 0.00 0.00 2.62
212 213 7.178983 TCCAATCAATGAATTTACCAGCTTTCT 59.821 33.333 0.00 0.00 0.00 2.52
213 214 7.820872 CCAATCAATGAATTTACCAGCTTTCTT 59.179 33.333 0.00 0.00 0.00 2.52
214 215 9.211485 CAATCAATGAATTTACCAGCTTTCTTT 57.789 29.630 0.00 0.00 0.00 2.52
215 216 8.992835 ATCAATGAATTTACCAGCTTTCTTTC 57.007 30.769 0.00 0.00 0.00 2.62
216 217 7.083858 TCAATGAATTTACCAGCTTTCTTTCG 58.916 34.615 0.00 0.00 0.00 3.46
217 218 6.817765 ATGAATTTACCAGCTTTCTTTCGA 57.182 33.333 0.00 0.00 0.00 3.71
218 219 5.997385 TGAATTTACCAGCTTTCTTTCGAC 58.003 37.500 0.00 0.00 0.00 4.20
219 220 5.529430 TGAATTTACCAGCTTTCTTTCGACA 59.471 36.000 0.00 0.00 0.00 4.35
221 222 6.575162 ATTTACCAGCTTTCTTTCGACAAT 57.425 33.333 0.00 0.00 0.00 2.71
222 223 7.681939 ATTTACCAGCTTTCTTTCGACAATA 57.318 32.000 0.00 0.00 0.00 1.90
223 224 6.721571 TTACCAGCTTTCTTTCGACAATAG 57.278 37.500 0.00 0.00 0.00 1.73
225 226 5.305585 ACCAGCTTTCTTTCGACAATAGAA 58.694 37.500 0.00 0.00 0.00 2.10
307 308 8.620116 TGATTAGTTTGTGAATCAATCTGTGA 57.380 30.769 0.00 0.00 38.73 3.58
320 321 7.578310 ATCAATCTGTGATTGAATGGTTAGG 57.422 36.000 21.70 0.00 45.13 2.69
321 322 5.887598 TCAATCTGTGATTGAATGGTTAGGG 59.112 40.000 17.38 0.00 35.35 3.53
322 323 4.235079 TCTGTGATTGAATGGTTAGGGG 57.765 45.455 0.00 0.00 0.00 4.79
323 324 3.053693 TCTGTGATTGAATGGTTAGGGGG 60.054 47.826 0.00 0.00 0.00 5.40
324 325 2.922955 TGTGATTGAATGGTTAGGGGGA 59.077 45.455 0.00 0.00 0.00 4.81
325 326 3.288092 GTGATTGAATGGTTAGGGGGAC 58.712 50.000 0.00 0.00 0.00 4.46
326 327 2.922955 TGATTGAATGGTTAGGGGGACA 59.077 45.455 0.00 0.00 0.00 4.02
327 328 3.335183 TGATTGAATGGTTAGGGGGACAA 59.665 43.478 0.00 0.00 0.00 3.18
329 330 3.380471 TGAATGGTTAGGGGGACAATG 57.620 47.619 0.00 0.00 0.00 2.82
330 331 2.922955 TGAATGGTTAGGGGGACAATGA 59.077 45.455 0.00 0.00 0.00 2.57
332 333 4.729370 TGAATGGTTAGGGGGACAATGATA 59.271 41.667 0.00 0.00 0.00 2.15
333 334 5.375354 TGAATGGTTAGGGGGACAATGATAT 59.625 40.000 0.00 0.00 0.00 1.63
334 335 4.993705 TGGTTAGGGGGACAATGATATC 57.006 45.455 0.00 0.00 0.00 1.63
335 336 3.655777 TGGTTAGGGGGACAATGATATCC 59.344 47.826 0.00 0.00 0.00 2.59
342 343 3.425162 GGACAATGATATCCCCAGTCC 57.575 52.381 14.17 14.17 37.50 3.85
343 344 2.711009 GGACAATGATATCCCCAGTCCA 59.289 50.000 20.14 0.00 42.65 4.02
344 345 3.244700 GGACAATGATATCCCCAGTCCAG 60.245 52.174 20.14 0.00 42.65 3.86
345 346 2.107204 ACAATGATATCCCCAGTCCAGC 59.893 50.000 0.00 0.00 0.00 4.85
346 347 2.107031 CAATGATATCCCCAGTCCAGCA 59.893 50.000 0.00 0.00 0.00 4.41
347 348 1.427809 TGATATCCCCAGTCCAGCAG 58.572 55.000 0.00 0.00 0.00 4.24
349 350 1.622811 GATATCCCCAGTCCAGCAGAG 59.377 57.143 0.00 0.00 0.00 3.35
350 351 0.339859 TATCCCCAGTCCAGCAGAGT 59.660 55.000 0.00 0.00 0.00 3.24
351 352 0.548682 ATCCCCAGTCCAGCAGAGTT 60.549 55.000 0.00 0.00 0.00 3.01
352 353 1.194781 TCCCCAGTCCAGCAGAGTTC 61.195 60.000 0.00 0.00 0.00 3.01
355 356 1.610102 CCCAGTCCAGCAGAGTTCAAG 60.610 57.143 0.00 0.00 0.00 3.02
356 357 1.071385 CCAGTCCAGCAGAGTTCAAGT 59.929 52.381 0.00 0.00 0.00 3.16
357 358 2.411904 CAGTCCAGCAGAGTTCAAGTC 58.588 52.381 0.00 0.00 0.00 3.01
358 359 1.346068 AGTCCAGCAGAGTTCAAGTCC 59.654 52.381 0.00 0.00 0.00 3.85
359 360 1.346068 GTCCAGCAGAGTTCAAGTCCT 59.654 52.381 0.00 0.00 0.00 3.85
360 361 2.563179 GTCCAGCAGAGTTCAAGTCCTA 59.437 50.000 0.00 0.00 0.00 2.94
361 362 2.828520 TCCAGCAGAGTTCAAGTCCTAG 59.171 50.000 0.00 0.00 0.00 3.02
362 363 2.828520 CCAGCAGAGTTCAAGTCCTAGA 59.171 50.000 0.00 0.00 0.00 2.43
363 364 3.367910 CCAGCAGAGTTCAAGTCCTAGAC 60.368 52.174 0.00 0.00 0.00 2.59
364 365 3.509575 CAGCAGAGTTCAAGTCCTAGACT 59.490 47.826 0.00 0.00 45.64 3.24
377 378 1.561542 CCTAGACTTGACATTGGGGCT 59.438 52.381 0.00 0.00 0.00 5.19
379 380 1.067295 AGACTTGACATTGGGGCTCA 58.933 50.000 0.00 0.00 0.00 4.26
381 382 0.773644 ACTTGACATTGGGGCTCACT 59.226 50.000 0.00 0.00 0.00 3.41
382 383 1.145738 ACTTGACATTGGGGCTCACTT 59.854 47.619 0.00 0.00 0.00 3.16
383 384 2.242043 CTTGACATTGGGGCTCACTTT 58.758 47.619 0.00 0.00 0.00 2.66
384 385 2.380064 TGACATTGGGGCTCACTTTT 57.620 45.000 0.00 0.00 0.00 2.27
410 411 5.294306 TCTGGATTTATTTCAGACGATGTGC 59.706 40.000 0.00 0.00 33.21 4.57
422 423 0.374758 CGATGTGCGTTCAATGGGAG 59.625 55.000 0.00 0.00 34.64 4.30
423 424 0.734889 GATGTGCGTTCAATGGGAGG 59.265 55.000 0.00 0.00 0.00 4.30
424 425 0.327924 ATGTGCGTTCAATGGGAGGA 59.672 50.000 0.00 0.00 0.00 3.71
425 426 0.321564 TGTGCGTTCAATGGGAGGAG 60.322 55.000 0.00 0.00 0.00 3.69
426 427 0.036388 GTGCGTTCAATGGGAGGAGA 60.036 55.000 0.00 0.00 0.00 3.71
427 428 0.036388 TGCGTTCAATGGGAGGAGAC 60.036 55.000 0.00 0.00 0.00 3.36
428 429 1.084370 GCGTTCAATGGGAGGAGACG 61.084 60.000 0.00 0.00 0.00 4.18
431 432 2.347731 GTTCAATGGGAGGAGACGTTC 58.652 52.381 0.00 0.00 0.00 3.95
439 440 4.808649 GGAGACGTTCCCATCGAC 57.191 61.111 0.00 0.00 40.37 4.20
440 441 1.226603 GGAGACGTTCCCATCGACG 60.227 63.158 0.00 0.00 44.34 5.12
441 442 1.651240 GGAGACGTTCCCATCGACGA 61.651 60.000 0.00 0.00 41.53 4.20
442 443 0.522915 GAGACGTTCCCATCGACGAC 60.523 60.000 0.00 0.00 41.53 4.34
443 444 1.866496 GACGTTCCCATCGACGACG 60.866 63.158 0.00 0.00 41.53 5.12
460 461 3.112709 GAAGGCGTCTGTGGCGAC 61.113 66.667 0.00 0.00 39.82 5.19
462 463 3.616721 AGGCGTCTGTGGCGACTT 61.617 61.111 0.00 0.00 46.72 3.01
463 464 3.112709 GGCGTCTGTGGCGACTTC 61.113 66.667 0.00 0.00 34.02 3.01
464 465 3.470567 GCGTCTGTGGCGACTTCG 61.471 66.667 0.00 3.78 43.27 3.79
476 477 2.215907 CGACTTCGCCATCTCAAGAT 57.784 50.000 0.00 0.00 34.56 2.40
487 488 2.034104 TCTCAAGATGACATGCCAGC 57.966 50.000 0.00 0.00 0.00 4.85
488 489 1.279846 TCTCAAGATGACATGCCAGCA 59.720 47.619 0.00 0.00 0.00 4.41
489 490 2.089201 CTCAAGATGACATGCCAGCAA 58.911 47.619 0.00 0.00 0.00 3.91
490 491 2.688446 CTCAAGATGACATGCCAGCAAT 59.312 45.455 0.00 0.00 0.00 3.56
491 492 2.686405 TCAAGATGACATGCCAGCAATC 59.314 45.455 0.00 0.00 0.00 2.67
493 494 3.014304 AGATGACATGCCAGCAATCTT 57.986 42.857 0.00 0.00 0.00 2.40
495 496 3.380637 AGATGACATGCCAGCAATCTTTC 59.619 43.478 0.00 0.64 0.00 2.62
496 497 1.469703 TGACATGCCAGCAATCTTTCG 59.530 47.619 0.00 0.00 0.00 3.46
498 499 1.097232 CATGCCAGCAATCTTTCGGA 58.903 50.000 0.00 0.00 0.00 4.55
499 500 1.065102 CATGCCAGCAATCTTTCGGAG 59.935 52.381 0.00 0.00 0.00 4.63
500 501 0.324614 TGCCAGCAATCTTTCGGAGA 59.675 50.000 0.00 0.00 39.13 3.71
502 503 1.332997 GCCAGCAATCTTTCGGAGATG 59.667 52.381 3.48 0.00 44.41 2.90
503 504 1.332997 CCAGCAATCTTTCGGAGATGC 59.667 52.381 3.48 8.58 44.41 3.91
504 505 2.286872 CAGCAATCTTTCGGAGATGCT 58.713 47.619 14.44 14.44 44.41 3.79
505 506 2.287373 CAGCAATCTTTCGGAGATGCTC 59.713 50.000 15.96 0.00 44.41 4.26
507 508 2.877168 GCAATCTTTCGGAGATGCTCAT 59.123 45.455 3.48 0.00 44.41 2.90
508 509 4.060900 GCAATCTTTCGGAGATGCTCATA 58.939 43.478 3.48 0.00 44.41 2.15
509 510 4.152045 GCAATCTTTCGGAGATGCTCATAG 59.848 45.833 3.48 0.00 44.41 2.23
511 512 3.566351 TCTTTCGGAGATGCTCATAGGA 58.434 45.455 0.00 0.00 35.04 2.94
512 513 3.960755 TCTTTCGGAGATGCTCATAGGAA 59.039 43.478 0.00 0.00 35.04 3.36
514 515 5.775195 TCTTTCGGAGATGCTCATAGGAATA 59.225 40.000 0.00 0.00 35.04 1.75
515 516 6.267699 TCTTTCGGAGATGCTCATAGGAATAA 59.732 38.462 0.00 0.00 35.04 1.40
516 517 5.651387 TCGGAGATGCTCATAGGAATAAG 57.349 43.478 0.00 0.00 31.08 1.73
517 518 4.464244 TCGGAGATGCTCATAGGAATAAGG 59.536 45.833 0.00 0.00 31.08 2.69
519 520 5.486526 GGAGATGCTCATAGGAATAAGGTG 58.513 45.833 0.00 0.00 31.08 4.00
520 521 5.012561 GGAGATGCTCATAGGAATAAGGTGT 59.987 44.000 0.00 0.00 31.08 4.16
521 522 5.862845 AGATGCTCATAGGAATAAGGTGTG 58.137 41.667 0.00 0.00 0.00 3.82
524 525 4.225042 TGCTCATAGGAATAAGGTGTGTGT 59.775 41.667 0.00 0.00 0.00 3.72
525 526 4.572389 GCTCATAGGAATAAGGTGTGTGTG 59.428 45.833 0.00 0.00 0.00 3.82
526 527 4.513442 TCATAGGAATAAGGTGTGTGTGC 58.487 43.478 0.00 0.00 0.00 4.57
527 528 1.808411 AGGAATAAGGTGTGTGTGCG 58.192 50.000 0.00 0.00 0.00 5.34
528 529 1.071699 AGGAATAAGGTGTGTGTGCGT 59.928 47.619 0.00 0.00 0.00 5.24
530 531 0.591170 AATAAGGTGTGTGTGCGTGC 59.409 50.000 0.00 0.00 0.00 5.34
531 532 1.565156 ATAAGGTGTGTGTGCGTGCG 61.565 55.000 0.00 0.00 0.00 5.34
532 533 2.909614 TAAGGTGTGTGTGCGTGCGT 62.910 55.000 0.00 0.00 0.00 5.24
533 534 3.871574 GGTGTGTGTGCGTGCGTT 61.872 61.111 0.00 0.00 0.00 4.84
534 535 2.099446 GTGTGTGTGCGTGCGTTT 59.901 55.556 0.00 0.00 0.00 3.60
537 538 1.192757 GTGTGTGTGCGTGCGTTTATA 59.807 47.619 0.00 0.00 0.00 0.98
538 539 2.070028 TGTGTGTGCGTGCGTTTATAT 58.930 42.857 0.00 0.00 0.00 0.86
539 540 2.159774 TGTGTGTGCGTGCGTTTATATG 60.160 45.455 0.00 0.00 0.00 1.78
541 542 1.661617 GTGTGCGTGCGTTTATATGGA 59.338 47.619 0.00 0.00 0.00 3.41
542 543 2.286833 GTGTGCGTGCGTTTATATGGAT 59.713 45.455 0.00 0.00 0.00 3.41
544 545 2.542178 GTGCGTGCGTTTATATGGATGA 59.458 45.455 0.00 0.00 0.00 2.92
545 546 2.799978 TGCGTGCGTTTATATGGATGAG 59.200 45.455 0.00 0.00 0.00 2.90
546 547 2.800544 GCGTGCGTTTATATGGATGAGT 59.199 45.455 0.00 0.00 0.00 3.41
547 548 3.362986 GCGTGCGTTTATATGGATGAGTG 60.363 47.826 0.00 0.00 0.00 3.51
548 549 3.802139 CGTGCGTTTATATGGATGAGTGT 59.198 43.478 0.00 0.00 0.00 3.55
550 551 5.633601 CGTGCGTTTATATGGATGAGTGTAT 59.366 40.000 0.00 0.00 0.00 2.29
551 552 6.399986 CGTGCGTTTATATGGATGAGTGTATG 60.400 42.308 0.00 0.00 0.00 2.39
554 555 6.183360 GCGTTTATATGGATGAGTGTATGCTC 60.183 42.308 0.00 0.00 36.12 4.26
556 557 6.590234 TTATATGGATGAGTGTATGCTCGT 57.410 37.500 0.00 0.00 38.28 4.18
558 559 1.824852 TGGATGAGTGTATGCTCGTGT 59.175 47.619 0.00 0.00 38.28 4.49
559 560 3.020984 TGGATGAGTGTATGCTCGTGTA 58.979 45.455 0.00 0.00 38.28 2.90
561 562 3.983988 GGATGAGTGTATGCTCGTGTATG 59.016 47.826 0.00 0.00 38.28 2.39
562 563 4.499865 GGATGAGTGTATGCTCGTGTATGT 60.500 45.833 0.00 0.00 38.28 2.29
563 564 5.278315 GGATGAGTGTATGCTCGTGTATGTA 60.278 44.000 0.00 0.00 38.28 2.29
564 565 5.570234 TGAGTGTATGCTCGTGTATGTAA 57.430 39.130 0.00 0.00 38.28 2.41
565 566 5.578776 TGAGTGTATGCTCGTGTATGTAAG 58.421 41.667 0.00 0.00 38.28 2.34
566 567 4.360563 AGTGTATGCTCGTGTATGTAAGC 58.639 43.478 0.00 0.00 35.31 3.09
567 568 3.179795 GTGTATGCTCGTGTATGTAAGCG 59.820 47.826 0.00 0.00 37.57 4.68
568 569 2.863401 ATGCTCGTGTATGTAAGCGA 57.137 45.000 0.00 0.00 37.57 4.93
569 570 1.904144 TGCTCGTGTATGTAAGCGAC 58.096 50.000 0.00 0.00 37.57 5.19
570 571 1.471287 TGCTCGTGTATGTAAGCGACT 59.529 47.619 0.00 0.00 37.57 4.18
571 572 2.094906 TGCTCGTGTATGTAAGCGACTT 60.095 45.455 0.00 0.00 37.57 3.01
574 575 4.163458 TCGTGTATGTAAGCGACTTCAA 57.837 40.909 0.00 0.00 0.00 2.69
575 576 4.163552 TCGTGTATGTAAGCGACTTCAAG 58.836 43.478 0.00 0.00 0.00 3.02
576 577 3.918591 CGTGTATGTAAGCGACTTCAAGT 59.081 43.478 0.00 0.00 0.00 3.16
577 578 4.201494 CGTGTATGTAAGCGACTTCAAGTG 60.201 45.833 0.00 0.00 0.00 3.16
578 579 4.684703 GTGTATGTAAGCGACTTCAAGTGT 59.315 41.667 0.00 0.00 0.00 3.55
579 580 5.860182 GTGTATGTAAGCGACTTCAAGTGTA 59.140 40.000 0.00 0.00 0.00 2.90
580 581 5.860182 TGTATGTAAGCGACTTCAAGTGTAC 59.140 40.000 0.00 0.00 0.00 2.90
582 583 4.684877 TGTAAGCGACTTCAAGTGTACAA 58.315 39.130 0.00 0.00 0.00 2.41
583 584 5.294356 TGTAAGCGACTTCAAGTGTACAAT 58.706 37.500 0.00 0.00 0.00 2.71
585 586 3.728845 AGCGACTTCAAGTGTACAATGT 58.271 40.909 0.00 0.00 0.00 2.71
586 587 4.127171 AGCGACTTCAAGTGTACAATGTT 58.873 39.130 0.00 0.00 0.00 2.71
587 588 4.211374 AGCGACTTCAAGTGTACAATGTTC 59.789 41.667 0.00 0.00 0.00 3.18
588 589 4.610680 GCGACTTCAAGTGTACAATGTTCC 60.611 45.833 0.00 0.00 0.00 3.62
590 591 5.007234 CGACTTCAAGTGTACAATGTTCCAA 59.993 40.000 0.00 0.00 0.00 3.53
592 593 6.795399 ACTTCAAGTGTACAATGTTCCAAAG 58.205 36.000 0.00 2.49 0.00 2.77
593 594 6.601613 ACTTCAAGTGTACAATGTTCCAAAGA 59.398 34.615 0.00 0.00 0.00 2.52
594 595 7.122055 ACTTCAAGTGTACAATGTTCCAAAGAA 59.878 33.333 0.00 0.00 0.00 2.52
595 596 7.397892 TCAAGTGTACAATGTTCCAAAGAAA 57.602 32.000 0.00 0.00 32.58 2.52
596 597 7.831753 TCAAGTGTACAATGTTCCAAAGAAAA 58.168 30.769 0.00 0.00 32.58 2.29
597 598 7.973388 TCAAGTGTACAATGTTCCAAAGAAAAG 59.027 33.333 0.00 0.00 32.58 2.27
598 599 6.805713 AGTGTACAATGTTCCAAAGAAAAGG 58.194 36.000 0.00 0.00 32.58 3.11
599 600 6.605594 AGTGTACAATGTTCCAAAGAAAAGGA 59.394 34.615 0.00 0.00 32.58 3.36
600 601 7.123547 AGTGTACAATGTTCCAAAGAAAAGGAA 59.876 33.333 0.00 0.00 41.41 3.36
605 606 8.869109 ACAATGTTCCAAAGAAAAGGAATATGA 58.131 29.630 4.55 0.00 42.58 2.15
606 607 9.880157 CAATGTTCCAAAGAAAAGGAATATGAT 57.120 29.630 4.55 0.00 42.58 2.45
608 609 9.880157 ATGTTCCAAAGAAAAGGAATATGATTG 57.120 29.630 0.00 0.00 44.98 2.67
609 610 8.313292 TGTTCCAAAGAAAAGGAATATGATTGG 58.687 33.333 0.00 0.00 44.98 3.16
610 611 8.314021 GTTCCAAAGAAAAGGAATATGATTGGT 58.686 33.333 0.00 0.00 44.98 3.67
612 613 8.531146 TCCAAAGAAAAGGAATATGATTGGTTC 58.469 33.333 0.00 0.00 36.89 3.62
613 614 7.765819 CCAAAGAAAAGGAATATGATTGGTTCC 59.234 37.037 0.00 0.00 41.32 3.62
614 615 8.313292 CAAAGAAAAGGAATATGATTGGTTCCA 58.687 33.333 6.19 0.00 43.01 3.53
616 617 7.840931 AGAAAAGGAATATGATTGGTTCCAAC 58.159 34.615 6.41 2.52 43.01 3.77
617 618 7.675619 AGAAAAGGAATATGATTGGTTCCAACT 59.324 33.333 6.41 0.00 43.01 3.16
701 6477 3.367703 CCCACATGAGTTGGAAAGAATGC 60.368 47.826 0.00 0.00 32.35 3.56
720 6496 3.004171 TGCCGCACGTTGTAAAATAGAT 58.996 40.909 0.00 0.00 0.00 1.98
787 6563 5.772825 TGGTACTACTAAAACACACGAGT 57.227 39.130 0.00 0.00 0.00 4.18
791 6567 8.668353 TGGTACTACTAAAACACACGAGTATAG 58.332 37.037 0.00 0.00 0.00 1.31
802 6578 4.621460 CACACGAGTATAGTTGTTCCACAG 59.379 45.833 0.00 0.00 0.00 3.66
815 6591 2.270352 TCCACAGGAAGCAATTTCGT 57.730 45.000 0.00 0.00 36.62 3.85
864 6640 2.047274 CCTCGCCCATGTCGTGTT 60.047 61.111 4.83 0.00 0.00 3.32
881 6657 0.942884 GTTCCGTCCTTCACACCGTC 60.943 60.000 0.00 0.00 0.00 4.79
908 6684 2.620115 CCTTCAACTCATGTGTGCACTT 59.380 45.455 19.41 0.00 0.00 3.16
909 6685 3.549423 CCTTCAACTCATGTGTGCACTTG 60.549 47.826 19.41 12.04 37.69 3.16
990 6768 1.655484 CTTGCCAGCGATACACATCA 58.345 50.000 0.00 0.00 0.00 3.07
1041 6819 2.159043 GCCGAGAAGATCTTGTCCATCA 60.159 50.000 22.94 0.00 30.00 3.07
1266 7048 1.525535 GCAGCTCATCGGCAAGGAT 60.526 57.895 0.00 0.00 35.87 3.24
2008 7791 8.920665 CCATTCTCTCTTATGAATAAGCTAACG 58.079 37.037 5.36 0.00 39.60 3.18
2082 7892 7.396339 TGTTCTTTTCTGCTCCTACATAGAGTA 59.604 37.037 0.00 0.00 33.69 2.59
2083 7893 7.956328 TCTTTTCTGCTCCTACATAGAGTAA 57.044 36.000 0.00 0.00 33.69 2.24
2084 7894 8.540507 TCTTTTCTGCTCCTACATAGAGTAAT 57.459 34.615 0.00 0.00 33.69 1.89
2085 7895 9.642343 TCTTTTCTGCTCCTACATAGAGTAATA 57.358 33.333 0.00 0.00 33.69 0.98
2120 7932 3.715638 ACAAGCCCTTCCTTTACTACC 57.284 47.619 0.00 0.00 0.00 3.18
2122 7934 4.432316 ACAAGCCCTTCCTTTACTACCTA 58.568 43.478 0.00 0.00 0.00 3.08
2131 7943 7.769507 CCCTTCCTTTACTACCTATTTCTGTTC 59.230 40.741 0.00 0.00 0.00 3.18
2141 7953 8.161425 ACTACCTATTTCTGTTCAAAGCCTAAA 58.839 33.333 0.00 0.00 0.00 1.85
2147 7959 5.767816 TCTGTTCAAAGCCTAAAAACTCC 57.232 39.130 0.00 0.00 0.00 3.85
2149 7961 5.833131 TCTGTTCAAAGCCTAAAAACTCCAT 59.167 36.000 0.00 0.00 0.00 3.41
2199 8012 6.089954 GTGTTGTTATTGTCGAACCTACTACC 59.910 42.308 0.00 0.00 0.00 3.18
2204 8017 8.530311 TGTTATTGTCGAACCTACTACCAAATA 58.470 33.333 0.00 0.00 0.00 1.40
2206 8019 9.754382 TTATTGTCGAACCTACTACCAAATATC 57.246 33.333 0.00 0.00 0.00 1.63
2358 8172 7.094508 TCAAAAAGAAACAGCTGATGTAACA 57.905 32.000 23.35 0.00 43.00 2.41
2370 8184 5.356190 AGCTGATGTAACAATCAATGACCTG 59.644 40.000 0.00 0.00 36.16 4.00
2373 8187 5.476254 TGATGTAACAATCAATGACCTGCAA 59.524 36.000 0.00 0.00 33.63 4.08
2397 8212 3.804786 TCTTGAACGTTGGTCACACTA 57.195 42.857 5.00 0.00 0.00 2.74
2417 8232 1.833630 AGCCTTGTCAGCACTATAGCA 59.166 47.619 0.00 0.00 36.85 3.49
2454 8270 8.601546 ACTCCTTTTTGCATTAAAATAATGGGA 58.398 29.630 11.02 7.43 38.03 4.37
2501 8317 5.119279 CGAACTGATCCAAACACTAGTTCAG 59.881 44.000 14.21 14.21 42.34 3.02
2650 8543 4.221924 TGGAAATTAGCTGGTAAAAAGCCC 59.778 41.667 3.16 2.61 41.82 5.19
2787 8692 5.389859 TCCAACTGGTGCTTCATTTAATG 57.610 39.130 0.00 0.00 36.34 1.90
3035 8968 3.869623 GCTCAATTCTCAGCCTCCA 57.130 52.632 0.00 0.00 0.00 3.86
3090 9023 0.329261 TGGCTTCAATGAGGAGGTGG 59.671 55.000 0.00 0.00 0.00 4.61
3159 9092 4.320567 CGGTATTTGTGTTGTGTGCCATAA 60.321 41.667 0.00 0.00 0.00 1.90
3175 9108 5.406175 GTGCCATAAATAGTTCGCGGTATTA 59.594 40.000 6.13 0.00 0.00 0.98
3182 9115 9.709495 ATAAATAGTTCGCGGTATTACCATAAA 57.291 29.630 6.13 0.94 38.47 1.40
3234 9167 5.669164 TGTGCAGGATACATTGTACTACA 57.331 39.130 0.00 0.00 41.41 2.74
3269 9202 2.352422 GAGGATGCTGGCACACCA 59.648 61.111 17.65 0.00 46.51 4.17
3398 9331 2.110578 AGGCTTGCCCATAATCCAAAC 58.889 47.619 8.17 0.00 35.39 2.93
3411 9344 3.706600 ATCCAAACGTTAGGGTGCTAA 57.293 42.857 16.01 0.58 0.00 3.09
3424 9357 1.676006 GGTGCTAAGCAACACAAGTGT 59.324 47.619 0.00 0.00 46.68 3.55
3470 9403 7.955750 TCATTCCTAATCTACCCATCAGTGATA 59.044 37.037 5.03 0.00 0.00 2.15
3519 9455 5.435686 TGGTGAGCCTAGTTGTGATAAAT 57.564 39.130 0.00 0.00 35.27 1.40
3686 9622 0.456142 TCTCACTTCGCATTCGGTCG 60.456 55.000 0.00 0.00 36.13 4.79
3877 9816 7.119846 ACAGAGGAGTTTAAATTCATCCTTTCG 59.880 37.037 18.20 10.68 40.48 3.46
3954 9893 1.377202 GGATCGCTGGCAACTGGAA 60.377 57.895 0.00 0.00 35.79 3.53
4091 10030 5.521735 CCTGAGGTCAATCATAAGAAGTTCG 59.478 44.000 0.00 0.00 0.00 3.95
4156 10095 6.109359 GCCGGATATTAGTAATCAGATTGCT 58.891 40.000 16.92 16.92 38.73 3.91
4289 10234 0.106708 GATGTCCGAGCATTAGCCCA 59.893 55.000 0.00 0.00 43.56 5.36
4440 10407 8.871629 TCATTGTAAAACTAGAAAAGGCCATA 57.128 30.769 5.01 0.00 0.00 2.74
4441 10408 8.736244 TCATTGTAAAACTAGAAAAGGCCATAC 58.264 33.333 5.01 0.00 0.00 2.39
4518 10485 7.165460 TCACATGGTAACTCGAGATTTTCTA 57.835 36.000 21.68 0.00 37.61 2.10
4526 10493 7.590689 GGTAACTCGAGATTTTCTATCTTACGG 59.409 40.741 21.68 0.00 0.00 4.02
4623 10606 5.773176 TCCTCAATCTACACTCTGTTGTACA 59.227 40.000 0.00 0.00 0.00 2.90
4701 10684 2.476619 CTGGCAGCTCGATTAATTACCG 59.523 50.000 0.00 1.23 0.00 4.02
4707 10690 3.131577 AGCTCGATTAATTACCGGTGTGA 59.868 43.478 19.93 3.07 0.00 3.58
4728 10711 4.507756 TGAAATGATCGCGACCTAAGAATG 59.492 41.667 12.93 0.00 0.00 2.67
4750 10734 2.621338 CACTTCATGCTCGAAGGCTAA 58.379 47.619 16.69 0.00 45.54 3.09
4757 10741 2.268298 TGCTCGAAGGCTAACGAAATC 58.732 47.619 15.28 9.48 38.05 2.17
4758 10742 2.268298 GCTCGAAGGCTAACGAAATCA 58.732 47.619 15.28 0.00 38.05 2.57
4770 10754 7.013655 AGGCTAACGAAATCAGATTTTGCATAT 59.986 33.333 19.53 8.90 37.18 1.78
4771 10755 7.324616 GGCTAACGAAATCAGATTTTGCATATC 59.675 37.037 19.53 10.61 37.18 1.63
4817 10877 5.801350 ACTGAATGGTCAAACATGATACG 57.199 39.130 0.00 0.00 31.88 3.06
4839 10899 1.197910 GGTAGATAAGCGTGCACGTC 58.802 55.000 36.80 28.32 42.22 4.34
4852 10925 3.241552 CGTGCACGTCGGTTTAAGATAAG 60.242 47.826 30.50 0.00 34.11 1.73
4869 10942 1.647346 AAGTGAACAGCGACACGAAA 58.353 45.000 0.00 0.00 41.22 3.46
4870 10943 1.865865 AGTGAACAGCGACACGAAAT 58.134 45.000 0.00 0.00 41.22 2.17
4885 10958 6.410914 CGACACGAAATAATTAATTGCACTCC 59.589 38.462 11.05 0.00 0.00 3.85
4919 10992 2.040544 CCTGGAACGGTGCATCCAC 61.041 63.158 0.00 0.00 40.74 4.02
4920 10993 2.358125 TGGAACGGTGCATCCACG 60.358 61.111 2.53 2.39 40.74 4.94
4964 11055 2.813908 GGGTGTAGCAACGGAGCG 60.814 66.667 0.00 0.00 40.15 5.03
4969 11061 4.789075 TAGCAACGGAGCGTCGCC 62.789 66.667 14.86 5.33 40.94 5.54
5008 11100 0.609662 GGTTACCAGGAACGGCACTA 59.390 55.000 0.00 0.00 0.00 2.74
5049 11141 1.980232 CCTCTGCCAGGCAAATGCA 60.980 57.895 17.03 0.00 44.36 3.96
5066 11158 8.995220 GGCAAATGCAATATGAATTATGAATGT 58.005 29.630 7.80 0.00 44.36 2.71
5071 11163 9.687210 ATGCAATATGAATTATGAATGTGACAC 57.313 29.630 0.00 0.00 0.00 3.67
5078 11170 1.900245 ATGAATGTGACACTGCTGCA 58.100 45.000 7.20 0.88 0.00 4.41
5096 11188 3.664107 TGCAGGTACAGAATGACAGAAC 58.336 45.455 0.00 0.00 39.69 3.01
5181 11273 1.415659 TCCCCCGTTTTTCTTCGTGTA 59.584 47.619 0.00 0.00 0.00 2.90
5284 11377 0.818040 GGCATCCCGCGTTCCTATTT 60.818 55.000 4.92 0.00 43.84 1.40
5288 11381 0.461339 TCCCGCGTTCCTATTTCTGC 60.461 55.000 4.92 0.00 0.00 4.26
5298 11391 4.860802 TCCTATTTCTGCAGGAATTCCA 57.139 40.909 25.13 7.02 38.02 3.53
5300 11393 6.384323 TTCCTATTTCTGCAGGAATTCCAGC 61.384 44.000 29.54 29.54 44.24 4.85
5301 11394 1.549203 TTTCTGCAGGAATTCCAGCC 58.451 50.000 31.89 18.18 46.58 4.85
5302 11395 0.405198 TTCTGCAGGAATTCCAGCCA 59.595 50.000 31.89 21.04 46.58 4.75
5303 11396 0.034767 TCTGCAGGAATTCCAGCCAG 60.035 55.000 31.89 27.01 46.58 4.85
5304 11397 0.034767 CTGCAGGAATTCCAGCCAGA 60.035 55.000 31.89 17.18 46.58 3.86
5305 11398 0.627451 TGCAGGAATTCCAGCCAGAT 59.373 50.000 31.89 6.85 46.58 2.90
5306 11399 1.030457 GCAGGAATTCCAGCCAGATG 58.970 55.000 26.94 15.31 42.01 2.90
5307 11400 1.030457 CAGGAATTCCAGCCAGATGC 58.970 55.000 26.22 0.00 38.89 3.91
5308 11401 0.627451 AGGAATTCCAGCCAGATGCA 59.373 50.000 26.22 0.00 44.83 3.96
5309 11402 1.217183 AGGAATTCCAGCCAGATGCAT 59.783 47.619 26.22 0.00 44.83 3.96
5310 11403 2.444388 AGGAATTCCAGCCAGATGCATA 59.556 45.455 26.22 0.00 44.83 3.14
5311 11404 2.555757 GGAATTCCAGCCAGATGCATAC 59.444 50.000 20.04 0.00 44.83 2.39
5312 11405 3.216800 GAATTCCAGCCAGATGCATACA 58.783 45.455 0.00 0.00 44.83 2.29
5314 11407 4.645863 ATTCCAGCCAGATGCATACATA 57.354 40.909 0.00 0.00 44.83 2.29
5315 11408 4.436113 TTCCAGCCAGATGCATACATAA 57.564 40.909 0.00 0.00 44.83 1.90
5346 11468 5.010719 ACGTACAAAGATTCTGGAGAAGTCA 59.989 40.000 0.00 0.00 37.48 3.41
5360 11482 5.250543 TGGAGAAGTCAGAAATGGATACCAA 59.749 40.000 0.00 0.00 36.95 3.67
5381 11503 7.713764 CCAATCTTGGTAAAACAAAGGAAAG 57.286 36.000 0.55 0.00 43.43 2.62
5382 11504 7.496747 CCAATCTTGGTAAAACAAAGGAAAGA 58.503 34.615 0.55 0.00 43.43 2.52
5383 11505 7.984617 CCAATCTTGGTAAAACAAAGGAAAGAA 59.015 33.333 0.55 0.00 43.43 2.52
5384 11506 9.377312 CAATCTTGGTAAAACAAAGGAAAGAAA 57.623 29.630 0.00 0.00 0.00 2.52
5400 11522 2.143122 AGAAAGACGCGCAAAATCAGA 58.857 42.857 5.73 0.00 0.00 3.27
5403 11525 0.163788 AGACGCGCAAAATCAGAACG 59.836 50.000 5.73 0.00 0.00 3.95
5404 11526 0.162933 GACGCGCAAAATCAGAACGA 59.837 50.000 5.73 0.00 0.00 3.85
5405 11527 0.796312 ACGCGCAAAATCAGAACGAT 59.204 45.000 5.73 0.00 35.12 3.73
5406 11528 1.996898 ACGCGCAAAATCAGAACGATA 59.003 42.857 5.73 0.00 32.51 2.92
5407 11529 2.607635 ACGCGCAAAATCAGAACGATAT 59.392 40.909 5.73 0.00 32.51 1.63
5408 11530 2.960266 CGCGCAAAATCAGAACGATATG 59.040 45.455 8.75 0.00 32.51 1.78
5409 11531 3.302415 CGCGCAAAATCAGAACGATATGA 60.302 43.478 8.75 0.00 32.51 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.823628 GTGGTAGACACGCCAAGTC 58.176 57.895 0.00 0.00 40.85 3.01
9 10 1.961394 AGTTCGAGCTTGTGGTAGACA 59.039 47.619 0.00 0.00 0.00 3.41
10 11 2.726832 AGTTCGAGCTTGTGGTAGAC 57.273 50.000 0.00 0.00 0.00 2.59
12 13 2.492484 AGGTAGTTCGAGCTTGTGGTAG 59.508 50.000 7.22 0.00 0.00 3.18
13 14 2.490903 GAGGTAGTTCGAGCTTGTGGTA 59.509 50.000 7.22 0.00 0.00 3.25
14 15 1.272769 GAGGTAGTTCGAGCTTGTGGT 59.727 52.381 7.22 0.00 0.00 4.16
15 16 1.546476 AGAGGTAGTTCGAGCTTGTGG 59.454 52.381 7.22 0.00 0.00 4.17
16 17 2.989840 CAAGAGGTAGTTCGAGCTTGTG 59.010 50.000 7.22 0.00 0.00 3.33
17 18 2.610727 GCAAGAGGTAGTTCGAGCTTGT 60.611 50.000 7.22 0.00 36.16 3.16
18 19 1.996191 GCAAGAGGTAGTTCGAGCTTG 59.004 52.381 7.22 0.00 36.67 4.01
19 20 1.618837 TGCAAGAGGTAGTTCGAGCTT 59.381 47.619 7.22 0.00 0.00 3.74
20 21 1.257743 TGCAAGAGGTAGTTCGAGCT 58.742 50.000 7.07 7.07 0.00 4.09
21 22 1.929836 CATGCAAGAGGTAGTTCGAGC 59.070 52.381 0.00 0.00 0.00 5.03
23 24 1.735700 CGCATGCAAGAGGTAGTTCGA 60.736 52.381 19.57 0.00 0.00 3.71
24 25 0.647410 CGCATGCAAGAGGTAGTTCG 59.353 55.000 19.57 0.00 0.00 3.95
26 27 1.442769 CACGCATGCAAGAGGTAGTT 58.557 50.000 19.57 0.00 0.00 2.24
27 28 3.143675 CACGCATGCAAGAGGTAGT 57.856 52.632 19.57 1.22 0.00 2.73
38 39 1.739466 ACTCCTACAAATGCACGCATG 59.261 47.619 5.06 0.00 36.68 4.06
39 40 2.113860 ACTCCTACAAATGCACGCAT 57.886 45.000 0.00 0.00 38.46 4.73
40 41 1.890876 AACTCCTACAAATGCACGCA 58.109 45.000 0.00 0.00 0.00 5.24
41 42 2.989422 AAACTCCTACAAATGCACGC 57.011 45.000 0.00 0.00 0.00 5.34
42 43 5.049680 AGTGTAAAACTCCTACAAATGCACG 60.050 40.000 0.00 0.00 31.64 5.34
43 44 6.313744 AGTGTAAAACTCCTACAAATGCAC 57.686 37.500 0.00 0.00 31.64 4.57
56 57 4.023193 CCAGCCATTTTCGAGTGTAAAACT 60.023 41.667 0.00 0.00 43.85 2.66
59 60 3.252215 CACCAGCCATTTTCGAGTGTAAA 59.748 43.478 0.00 0.00 0.00 2.01
60 61 2.811431 CACCAGCCATTTTCGAGTGTAA 59.189 45.455 0.00 0.00 0.00 2.41
61 62 2.224426 ACACCAGCCATTTTCGAGTGTA 60.224 45.455 0.07 0.00 35.36 2.90
63 64 1.069022 CACACCAGCCATTTTCGAGTG 60.069 52.381 0.00 0.00 0.00 3.51
64 65 1.202758 TCACACCAGCCATTTTCGAGT 60.203 47.619 0.00 0.00 0.00 4.18
65 66 1.522668 TCACACCAGCCATTTTCGAG 58.477 50.000 0.00 0.00 0.00 4.04
66 67 2.198827 ATCACACCAGCCATTTTCGA 57.801 45.000 0.00 0.00 0.00 3.71
68 69 4.202151 GGGATTATCACACCAGCCATTTTC 60.202 45.833 0.00 0.00 0.00 2.29
69 70 3.706086 GGGATTATCACACCAGCCATTTT 59.294 43.478 0.00 0.00 0.00 1.82
71 72 2.244510 TGGGATTATCACACCAGCCATT 59.755 45.455 0.00 0.00 0.00 3.16
72 73 1.852309 TGGGATTATCACACCAGCCAT 59.148 47.619 0.00 0.00 0.00 4.40
74 75 2.664402 ATGGGATTATCACACCAGCC 57.336 50.000 0.00 0.00 29.32 4.85
75 76 3.068590 CCAAATGGGATTATCACACCAGC 59.931 47.826 0.00 0.00 40.01 4.85
76 77 3.068590 GCCAAATGGGATTATCACACCAG 59.931 47.826 0.00 0.00 40.01 4.00
77 78 3.030291 GCCAAATGGGATTATCACACCA 58.970 45.455 0.00 0.00 40.01 4.17
78 79 2.365293 GGCCAAATGGGATTATCACACC 59.635 50.000 0.00 0.00 40.01 4.16
81 82 1.613437 CGGGCCAAATGGGATTATCAC 59.387 52.381 4.39 0.00 40.01 3.06
82 83 1.480312 CCGGGCCAAATGGGATTATCA 60.480 52.381 4.39 0.00 40.01 2.15
83 84 1.256812 CCGGGCCAAATGGGATTATC 58.743 55.000 4.39 0.00 40.01 1.75
84 85 0.178935 CCCGGGCCAAATGGGATTAT 60.179 55.000 8.08 0.00 46.41 1.28
85 86 1.231641 CCCGGGCCAAATGGGATTA 59.768 57.895 8.08 0.00 46.41 1.75
86 87 2.042025 CCCGGGCCAAATGGGATT 60.042 61.111 8.08 0.00 46.41 3.01
87 88 1.585651 TAACCCGGGCCAAATGGGAT 61.586 55.000 24.08 16.33 46.41 3.85
88 89 1.585651 ATAACCCGGGCCAAATGGGA 61.586 55.000 24.08 6.95 46.41 4.37
91 92 1.190643 AACATAACCCGGGCCAAATG 58.809 50.000 24.08 20.45 0.00 2.32
93 94 1.258676 GAAACATAACCCGGGCCAAA 58.741 50.000 24.08 3.25 0.00 3.28
94 95 0.961358 CGAAACATAACCCGGGCCAA 60.961 55.000 24.08 6.41 0.00 4.52
95 96 1.377463 CGAAACATAACCCGGGCCA 60.377 57.895 24.08 9.19 0.00 5.36
96 97 0.107752 TACGAAACATAACCCGGGCC 60.108 55.000 24.08 0.00 0.00 5.80
97 98 1.292992 CTACGAAACATAACCCGGGC 58.707 55.000 24.08 0.00 0.00 6.13
99 100 1.292992 GCCTACGAAACATAACCCGG 58.707 55.000 0.00 0.00 0.00 5.73
100 101 1.292992 GGCCTACGAAACATAACCCG 58.707 55.000 0.00 0.00 0.00 5.28
101 102 1.671979 GGGCCTACGAAACATAACCC 58.328 55.000 0.84 0.00 0.00 4.11
102 103 1.292992 CGGGCCTACGAAACATAACC 58.707 55.000 0.84 0.00 35.47 2.85
103 104 0.654160 GCGGGCCTACGAAACATAAC 59.346 55.000 0.84 0.00 35.47 1.89
104 105 0.538118 AGCGGGCCTACGAAACATAA 59.462 50.000 0.84 0.00 35.47 1.90
105 106 0.538118 AAGCGGGCCTACGAAACATA 59.462 50.000 0.84 0.00 35.47 2.29
108 109 0.672711 AGAAAGCGGGCCTACGAAAC 60.673 55.000 0.84 0.00 35.47 2.78
111 112 1.664321 GAGAGAAAGCGGGCCTACGA 61.664 60.000 0.84 0.00 35.47 3.43
112 113 1.227002 GAGAGAAAGCGGGCCTACG 60.227 63.158 0.84 0.00 0.00 3.51
113 114 0.537653 AAGAGAGAAAGCGGGCCTAC 59.462 55.000 0.84 0.00 0.00 3.18
114 115 1.207329 GAAAGAGAGAAAGCGGGCCTA 59.793 52.381 0.84 0.00 0.00 3.93
116 117 1.027255 GGAAAGAGAGAAAGCGGGCC 61.027 60.000 0.00 0.00 0.00 5.80
117 118 0.035915 AGGAAAGAGAGAAAGCGGGC 60.036 55.000 0.00 0.00 0.00 6.13
118 119 2.481289 AAGGAAAGAGAGAAAGCGGG 57.519 50.000 0.00 0.00 0.00 6.13
119 120 3.189495 GGAAAAGGAAAGAGAGAAAGCGG 59.811 47.826 0.00 0.00 0.00 5.52
120 121 3.189495 GGGAAAAGGAAAGAGAGAAAGCG 59.811 47.826 0.00 0.00 0.00 4.68
121 122 4.402829 AGGGAAAAGGAAAGAGAGAAAGC 58.597 43.478 0.00 0.00 0.00 3.51
122 123 6.968263 AAAGGGAAAAGGAAAGAGAGAAAG 57.032 37.500 0.00 0.00 0.00 2.62
124 125 6.673583 AGAAAAGGGAAAAGGAAAGAGAGAA 58.326 36.000 0.00 0.00 0.00 2.87
128 129 5.140454 TGGAGAAAAGGGAAAAGGAAAGAG 58.860 41.667 0.00 0.00 0.00 2.85
129 130 5.137412 TGGAGAAAAGGGAAAAGGAAAGA 57.863 39.130 0.00 0.00 0.00 2.52
130 131 5.305386 ACATGGAGAAAAGGGAAAAGGAAAG 59.695 40.000 0.00 0.00 0.00 2.62
131 132 5.215845 ACATGGAGAAAAGGGAAAAGGAAA 58.784 37.500 0.00 0.00 0.00 3.13
133 134 4.469469 ACATGGAGAAAAGGGAAAAGGA 57.531 40.909 0.00 0.00 0.00 3.36
134 135 4.344968 ACAACATGGAGAAAAGGGAAAAGG 59.655 41.667 0.00 0.00 0.00 3.11
135 136 5.068987 TGACAACATGGAGAAAAGGGAAAAG 59.931 40.000 0.00 0.00 0.00 2.27
136 137 4.959210 TGACAACATGGAGAAAAGGGAAAA 59.041 37.500 0.00 0.00 0.00 2.29
137 138 4.340950 GTGACAACATGGAGAAAAGGGAAA 59.659 41.667 0.00 0.00 0.00 3.13
139 140 3.486383 GTGACAACATGGAGAAAAGGGA 58.514 45.455 0.00 0.00 0.00 4.20
140 141 2.226437 CGTGACAACATGGAGAAAAGGG 59.774 50.000 0.00 0.00 0.00 3.95
141 142 2.350772 GCGTGACAACATGGAGAAAAGG 60.351 50.000 0.00 0.00 34.00 3.11
142 143 2.350772 GGCGTGACAACATGGAGAAAAG 60.351 50.000 0.00 0.00 34.00 2.27
143 144 1.606668 GGCGTGACAACATGGAGAAAA 59.393 47.619 0.00 0.00 34.00 2.29
144 145 1.202758 AGGCGTGACAACATGGAGAAA 60.203 47.619 0.00 0.00 34.00 2.52
145 146 0.396435 AGGCGTGACAACATGGAGAA 59.604 50.000 0.00 0.00 34.00 2.87
146 147 0.396435 AAGGCGTGACAACATGGAGA 59.604 50.000 0.00 0.00 34.00 3.71
147 148 0.518636 CAAGGCGTGACAACATGGAG 59.481 55.000 0.00 0.00 34.00 3.86
149 150 1.196808 GTACAAGGCGTGACAACATGG 59.803 52.381 7.60 0.00 34.00 3.66
151 152 1.071699 AGGTACAAGGCGTGACAACAT 59.928 47.619 7.60 0.00 0.00 2.71
152 153 0.466543 AGGTACAAGGCGTGACAACA 59.533 50.000 7.60 0.00 0.00 3.33
153 154 1.263217 CAAGGTACAAGGCGTGACAAC 59.737 52.381 7.60 2.38 0.00 3.32
154 155 1.134340 ACAAGGTACAAGGCGTGACAA 60.134 47.619 7.60 0.00 0.00 3.18
155 156 0.466543 ACAAGGTACAAGGCGTGACA 59.533 50.000 7.60 0.00 0.00 3.58
156 157 2.443887 TACAAGGTACAAGGCGTGAC 57.556 50.000 7.60 1.13 0.00 3.67
158 159 5.866335 TTTAATACAAGGTACAAGGCGTG 57.134 39.130 0.00 0.00 0.00 5.34
159 160 6.880942 TTTTTAATACAAGGTACAAGGCGT 57.119 33.333 0.00 0.00 0.00 5.68
181 182 9.768662 GCTGGTAAATTCATTGATTGGATTATT 57.231 29.630 0.00 0.00 31.92 1.40
182 183 9.151177 AGCTGGTAAATTCATTGATTGGATTAT 57.849 29.630 0.00 0.00 31.92 1.28
185 186 7.427989 AAGCTGGTAAATTCATTGATTGGAT 57.572 32.000 0.00 0.00 0.00 3.41
188 189 8.767478 AAGAAAGCTGGTAAATTCATTGATTG 57.233 30.769 0.00 0.00 0.00 2.67
191 192 7.040755 TCGAAAGAAAGCTGGTAAATTCATTGA 60.041 33.333 0.00 0.00 37.03 2.57
192 193 7.061094 GTCGAAAGAAAGCTGGTAAATTCATTG 59.939 37.037 0.00 0.00 45.01 2.82
194 195 6.206634 TGTCGAAAGAAAGCTGGTAAATTCAT 59.793 34.615 0.00 0.00 45.01 2.57
195 196 5.529430 TGTCGAAAGAAAGCTGGTAAATTCA 59.471 36.000 0.00 0.00 45.01 2.57
196 197 5.997385 TGTCGAAAGAAAGCTGGTAAATTC 58.003 37.500 0.00 0.00 45.01 2.17
197 198 6.385649 TTGTCGAAAGAAAGCTGGTAAATT 57.614 33.333 0.00 0.00 45.01 1.82
198 199 6.575162 ATTGTCGAAAGAAAGCTGGTAAAT 57.425 33.333 0.00 0.00 45.01 1.40
202 203 4.894784 TCTATTGTCGAAAGAAAGCTGGT 58.105 39.130 0.00 0.00 45.01 4.00
203 204 5.862924 TTCTATTGTCGAAAGAAAGCTGG 57.137 39.130 0.00 0.00 45.01 4.85
208 209 8.999431 AGCAATACTTTCTATTGTCGAAAGAAA 58.001 29.630 16.64 10.99 46.37 2.52
209 210 8.547967 AGCAATACTTTCTATTGTCGAAAGAA 57.452 30.769 16.64 0.00 46.37 2.52
210 211 8.547967 AAGCAATACTTTCTATTGTCGAAAGA 57.452 30.769 16.64 4.18 46.37 2.52
281 282 9.234827 TCACAGATTGATTCACAAACTAATCAT 57.765 29.630 0.00 0.00 40.71 2.45
300 301 4.386761 CCCCCTAACCATTCAATCACAGAT 60.387 45.833 0.00 0.00 0.00 2.90
301 302 3.053693 CCCCCTAACCATTCAATCACAGA 60.054 47.826 0.00 0.00 0.00 3.41
304 305 3.288092 GTCCCCCTAACCATTCAATCAC 58.712 50.000 0.00 0.00 0.00 3.06
305 306 2.922955 TGTCCCCCTAACCATTCAATCA 59.077 45.455 0.00 0.00 0.00 2.57
306 307 3.662759 TGTCCCCCTAACCATTCAATC 57.337 47.619 0.00 0.00 0.00 2.67
307 308 4.016666 TCATTGTCCCCCTAACCATTCAAT 60.017 41.667 0.00 0.00 0.00 2.57
309 310 2.922955 TCATTGTCCCCCTAACCATTCA 59.077 45.455 0.00 0.00 0.00 2.57
311 312 5.222337 GGATATCATTGTCCCCCTAACCATT 60.222 44.000 4.83 0.00 0.00 3.16
312 313 4.292306 GGATATCATTGTCCCCCTAACCAT 59.708 45.833 4.83 0.00 0.00 3.55
313 314 3.655777 GGATATCATTGTCCCCCTAACCA 59.344 47.826 4.83 0.00 0.00 3.67
315 316 4.302559 GGGATATCATTGTCCCCCTAAC 57.697 50.000 4.83 0.00 45.35 2.34
322 323 2.711009 TGGACTGGGGATATCATTGTCC 59.289 50.000 20.16 20.16 41.81 4.02
323 324 3.808618 GCTGGACTGGGGATATCATTGTC 60.809 52.174 4.83 6.89 0.00 3.18
324 325 2.107204 GCTGGACTGGGGATATCATTGT 59.893 50.000 4.83 0.00 0.00 2.71
325 326 2.107031 TGCTGGACTGGGGATATCATTG 59.893 50.000 4.83 0.00 0.00 2.82
326 327 2.374504 CTGCTGGACTGGGGATATCATT 59.625 50.000 4.83 0.00 0.00 2.57
327 328 1.983691 CTGCTGGACTGGGGATATCAT 59.016 52.381 4.83 0.00 0.00 2.45
329 330 1.622811 CTCTGCTGGACTGGGGATATC 59.377 57.143 0.00 0.00 0.00 1.63
330 331 1.061812 ACTCTGCTGGACTGGGGATAT 60.062 52.381 0.00 0.00 0.00 1.63
332 333 0.548682 AACTCTGCTGGACTGGGGAT 60.549 55.000 0.00 0.00 0.00 3.85
333 334 1.152030 AACTCTGCTGGACTGGGGA 60.152 57.895 0.00 0.00 0.00 4.81
334 335 1.298014 GAACTCTGCTGGACTGGGG 59.702 63.158 0.00 0.00 0.00 4.96
335 336 0.397941 TTGAACTCTGCTGGACTGGG 59.602 55.000 0.00 0.00 0.00 4.45
337 338 2.411904 GACTTGAACTCTGCTGGACTG 58.588 52.381 0.00 0.00 0.00 3.51
338 339 1.346068 GGACTTGAACTCTGCTGGACT 59.654 52.381 0.00 0.00 0.00 3.85
339 340 1.346068 AGGACTTGAACTCTGCTGGAC 59.654 52.381 0.00 0.00 0.00 4.02
341 342 2.828520 TCTAGGACTTGAACTCTGCTGG 59.171 50.000 0.00 0.00 0.00 4.85
342 343 3.509575 AGTCTAGGACTTGAACTCTGCTG 59.490 47.826 0.00 0.00 40.28 4.41
343 344 3.773560 AGTCTAGGACTTGAACTCTGCT 58.226 45.455 0.00 0.00 40.28 4.24
355 356 2.681097 GCCCCAATGTCAAGTCTAGGAC 60.681 54.545 0.00 0.00 34.63 3.85
356 357 1.559682 GCCCCAATGTCAAGTCTAGGA 59.440 52.381 0.00 0.00 0.00 2.94
357 358 1.561542 AGCCCCAATGTCAAGTCTAGG 59.438 52.381 0.00 0.00 0.00 3.02
358 359 2.237143 TGAGCCCCAATGTCAAGTCTAG 59.763 50.000 0.00 0.00 0.00 2.43
359 360 2.027192 GTGAGCCCCAATGTCAAGTCTA 60.027 50.000 0.00 0.00 0.00 2.59
360 361 1.067295 TGAGCCCCAATGTCAAGTCT 58.933 50.000 0.00 0.00 0.00 3.24
361 362 1.168714 GTGAGCCCCAATGTCAAGTC 58.831 55.000 0.00 0.00 0.00 3.01
362 363 0.773644 AGTGAGCCCCAATGTCAAGT 59.226 50.000 0.00 0.00 0.00 3.16
363 364 1.915141 AAGTGAGCCCCAATGTCAAG 58.085 50.000 0.00 0.00 0.00 3.02
364 365 2.380064 AAAGTGAGCCCCAATGTCAA 57.620 45.000 0.00 0.00 0.00 3.18
365 366 2.380064 AAAAGTGAGCCCCAATGTCA 57.620 45.000 0.00 0.00 0.00 3.58
382 383 8.792633 ACATCGTCTGAAATAAATCCAGAAAAA 58.207 29.630 0.00 0.00 38.49 1.94
383 384 8.236586 CACATCGTCTGAAATAAATCCAGAAAA 58.763 33.333 0.00 0.00 38.49 2.29
384 385 7.626240 GCACATCGTCTGAAATAAATCCAGAAA 60.626 37.037 0.00 0.00 38.49 2.52
386 387 5.294306 GCACATCGTCTGAAATAAATCCAGA 59.706 40.000 0.00 0.00 34.87 3.86
387 388 5.505286 GCACATCGTCTGAAATAAATCCAG 58.495 41.667 0.00 0.00 0.00 3.86
389 390 4.518217 CGCACATCGTCTGAAATAAATCC 58.482 43.478 0.00 0.00 0.00 3.01
403 404 0.374758 CTCCCATTGAACGCACATCG 59.625 55.000 0.00 0.00 45.38 3.84
404 405 0.734889 CCTCCCATTGAACGCACATC 59.265 55.000 0.00 0.00 0.00 3.06
406 407 0.321564 CTCCTCCCATTGAACGCACA 60.322 55.000 0.00 0.00 0.00 4.57
407 408 0.036388 TCTCCTCCCATTGAACGCAC 60.036 55.000 0.00 0.00 0.00 5.34
410 411 0.246635 ACGTCTCCTCCCATTGAACG 59.753 55.000 0.00 0.00 0.00 3.95
411 412 2.347731 GAACGTCTCCTCCCATTGAAC 58.652 52.381 0.00 0.00 0.00 3.18
412 413 1.278127 GGAACGTCTCCTCCCATTGAA 59.722 52.381 8.87 0.00 41.61 2.69
419 420 1.035932 TCGATGGGAACGTCTCCTCC 61.036 60.000 13.94 6.16 44.68 4.30
422 423 1.226603 CGTCGATGGGAACGTCTCC 60.227 63.158 0.00 7.90 44.51 3.71
423 424 0.522915 GTCGTCGATGGGAACGTCTC 60.523 60.000 4.48 0.00 44.51 3.36
424 425 1.505353 GTCGTCGATGGGAACGTCT 59.495 57.895 4.48 0.00 44.51 4.18
425 426 1.866496 CGTCGTCGATGGGAACGTC 60.866 63.158 6.56 0.00 43.20 4.34
426 427 1.855213 TTCGTCGTCGATGGGAACGT 61.855 55.000 14.28 0.00 45.65 3.99
427 428 1.132199 CTTCGTCGTCGATGGGAACG 61.132 60.000 14.28 10.22 45.65 3.95
428 429 2.650163 CTTCGTCGTCGATGGGAAC 58.350 57.895 14.28 0.00 45.65 3.62
442 443 4.717629 TCGCCACAGACGCCTTCG 62.718 66.667 0.00 0.00 42.43 3.79
443 444 3.112709 GTCGCCACAGACGCCTTC 61.113 66.667 0.00 0.00 0.00 3.46
445 446 3.575351 GAAGTCGCCACAGACGCCT 62.575 63.158 0.00 0.00 45.26 5.52
446 447 3.112709 GAAGTCGCCACAGACGCC 61.113 66.667 0.00 0.00 45.26 5.68
447 448 3.470567 CGAAGTCGCCACAGACGC 61.471 66.667 0.00 0.00 45.26 5.19
457 458 1.857217 CATCTTGAGATGGCGAAGTCG 59.143 52.381 12.20 0.00 46.09 4.18
467 468 2.092592 TGCTGGCATGTCATCTTGAGAT 60.093 45.455 0.00 0.00 29.62 2.75
469 470 1.746470 TGCTGGCATGTCATCTTGAG 58.254 50.000 0.00 0.00 0.00 3.02
471 472 2.688446 AGATTGCTGGCATGTCATCTTG 59.312 45.455 0.00 0.00 0.00 3.02
473 474 2.730934 AGATTGCTGGCATGTCATCT 57.269 45.000 0.00 0.00 0.00 2.90
474 475 3.703420 GAAAGATTGCTGGCATGTCATC 58.297 45.455 0.00 0.00 0.00 2.92
476 477 1.469703 CGAAAGATTGCTGGCATGTCA 59.530 47.619 0.00 0.00 0.00 3.58
477 478 1.202222 CCGAAAGATTGCTGGCATGTC 60.202 52.381 0.00 0.00 0.00 3.06
478 479 0.813184 CCGAAAGATTGCTGGCATGT 59.187 50.000 0.00 0.00 0.00 3.21
479 480 1.065102 CTCCGAAAGATTGCTGGCATG 59.935 52.381 0.00 0.00 0.00 4.06
480 481 1.065199 TCTCCGAAAGATTGCTGGCAT 60.065 47.619 0.00 0.00 0.00 4.40
482 483 1.332997 CATCTCCGAAAGATTGCTGGC 59.667 52.381 0.00 0.00 42.30 4.85
483 484 1.332997 GCATCTCCGAAAGATTGCTGG 59.667 52.381 0.00 0.00 42.30 4.85
484 485 2.286872 AGCATCTCCGAAAGATTGCTG 58.713 47.619 16.20 4.13 42.30 4.41
485 486 2.093288 TGAGCATCTCCGAAAGATTGCT 60.093 45.455 16.57 16.57 42.30 3.91
487 488 4.689812 CCTATGAGCATCTCCGAAAGATTG 59.310 45.833 0.00 0.00 42.30 2.67
488 489 4.590647 TCCTATGAGCATCTCCGAAAGATT 59.409 41.667 0.00 0.00 42.30 2.40
489 490 4.155709 TCCTATGAGCATCTCCGAAAGAT 58.844 43.478 0.00 0.00 46.04 2.40
490 491 3.566351 TCCTATGAGCATCTCCGAAAGA 58.434 45.455 0.00 0.00 38.72 2.52
491 492 4.327982 TTCCTATGAGCATCTCCGAAAG 57.672 45.455 0.00 0.00 34.92 2.62
493 494 5.047021 CCTTATTCCTATGAGCATCTCCGAA 60.047 44.000 0.00 0.00 34.92 4.30
495 496 4.221703 ACCTTATTCCTATGAGCATCTCCG 59.778 45.833 0.00 0.00 34.92 4.63
496 497 5.012561 ACACCTTATTCCTATGAGCATCTCC 59.987 44.000 0.00 0.00 34.92 3.71
498 499 5.367937 ACACACCTTATTCCTATGAGCATCT 59.632 40.000 0.00 0.00 34.92 2.90
499 500 5.468072 CACACACCTTATTCCTATGAGCATC 59.532 44.000 0.00 0.00 0.00 3.91
500 501 5.104360 ACACACACCTTATTCCTATGAGCAT 60.104 40.000 0.00 0.00 0.00 3.79
501 502 4.225042 ACACACACCTTATTCCTATGAGCA 59.775 41.667 0.00 0.00 0.00 4.26
502 503 4.572389 CACACACACCTTATTCCTATGAGC 59.428 45.833 0.00 0.00 0.00 4.26
503 504 4.572389 GCACACACACCTTATTCCTATGAG 59.428 45.833 0.00 0.00 0.00 2.90
504 505 4.513442 GCACACACACCTTATTCCTATGA 58.487 43.478 0.00 0.00 0.00 2.15
505 506 3.309682 CGCACACACACCTTATTCCTATG 59.690 47.826 0.00 0.00 0.00 2.23
507 508 2.300723 ACGCACACACACCTTATTCCTA 59.699 45.455 0.00 0.00 0.00 2.94
508 509 1.071699 ACGCACACACACCTTATTCCT 59.928 47.619 0.00 0.00 0.00 3.36
509 510 1.196808 CACGCACACACACCTTATTCC 59.803 52.381 0.00 0.00 0.00 3.01
511 512 0.591170 GCACGCACACACACCTTATT 59.409 50.000 0.00 0.00 0.00 1.40
512 513 1.565156 CGCACGCACACACACCTTAT 61.565 55.000 0.00 0.00 0.00 1.73
514 515 3.572539 CGCACGCACACACACCTT 61.573 61.111 0.00 0.00 0.00 3.50
515 516 4.830765 ACGCACGCACACACACCT 62.831 61.111 0.00 0.00 0.00 4.00
516 517 2.037913 TAAACGCACGCACACACACC 62.038 55.000 0.00 0.00 0.00 4.16
517 518 0.041663 ATAAACGCACGCACACACAC 60.042 50.000 0.00 0.00 0.00 3.82
519 520 2.427169 CATATAAACGCACGCACACAC 58.573 47.619 0.00 0.00 0.00 3.82
520 521 1.395262 CCATATAAACGCACGCACACA 59.605 47.619 0.00 0.00 0.00 3.72
521 522 1.661617 TCCATATAAACGCACGCACAC 59.338 47.619 0.00 0.00 0.00 3.82
524 525 2.799978 CTCATCCATATAAACGCACGCA 59.200 45.455 0.00 0.00 0.00 5.24
525 526 2.800544 ACTCATCCATATAAACGCACGC 59.199 45.455 0.00 0.00 0.00 5.34
526 527 3.802139 ACACTCATCCATATAAACGCACG 59.198 43.478 0.00 0.00 0.00 5.34
527 528 6.618592 GCATACACTCATCCATATAAACGCAC 60.619 42.308 0.00 0.00 0.00 5.34
528 529 5.408299 GCATACACTCATCCATATAAACGCA 59.592 40.000 0.00 0.00 0.00 5.24
530 531 6.033937 CGAGCATACACTCATCCATATAAACG 59.966 42.308 0.00 0.00 36.42 3.60
531 532 6.868864 ACGAGCATACACTCATCCATATAAAC 59.131 38.462 0.00 0.00 36.42 2.01
532 533 6.868339 CACGAGCATACACTCATCCATATAAA 59.132 38.462 0.00 0.00 36.42 1.40
533 534 6.015434 ACACGAGCATACACTCATCCATATAA 60.015 38.462 0.00 0.00 36.42 0.98
534 535 5.476945 ACACGAGCATACACTCATCCATATA 59.523 40.000 0.00 0.00 36.42 0.86
537 538 2.432146 ACACGAGCATACACTCATCCAT 59.568 45.455 0.00 0.00 36.42 3.41
538 539 1.824852 ACACGAGCATACACTCATCCA 59.175 47.619 0.00 0.00 36.42 3.41
539 540 2.586258 ACACGAGCATACACTCATCC 57.414 50.000 0.00 0.00 36.42 3.51
541 542 4.655762 ACATACACGAGCATACACTCAT 57.344 40.909 0.00 0.00 36.42 2.90
542 543 5.570234 TTACATACACGAGCATACACTCA 57.430 39.130 0.00 0.00 36.42 3.41
544 545 4.360563 GCTTACATACACGAGCATACACT 58.639 43.478 0.00 0.00 35.29 3.55
545 546 3.179795 CGCTTACATACACGAGCATACAC 59.820 47.826 0.00 0.00 34.90 2.90
546 547 3.065648 TCGCTTACATACACGAGCATACA 59.934 43.478 0.00 0.00 34.90 2.29
547 548 3.421231 GTCGCTTACATACACGAGCATAC 59.579 47.826 0.00 0.00 34.83 2.39
548 549 3.314357 AGTCGCTTACATACACGAGCATA 59.686 43.478 0.00 0.00 34.83 3.14
550 551 1.471287 AGTCGCTTACATACACGAGCA 59.529 47.619 0.00 0.00 34.83 4.26
551 552 2.190325 AGTCGCTTACATACACGAGC 57.810 50.000 0.00 0.00 34.83 5.03
554 555 3.918591 ACTTGAAGTCGCTTACATACACG 59.081 43.478 0.00 0.00 0.00 4.49
556 557 4.878439 ACACTTGAAGTCGCTTACATACA 58.122 39.130 0.00 0.00 0.00 2.29
558 559 6.016213 TGTACACTTGAAGTCGCTTACATA 57.984 37.500 0.00 0.00 0.00 2.29
559 560 4.878439 TGTACACTTGAAGTCGCTTACAT 58.122 39.130 0.00 0.00 0.00 2.29
561 562 5.176958 ACATTGTACACTTGAAGTCGCTTAC 59.823 40.000 11.06 0.00 0.00 2.34
562 563 5.294356 ACATTGTACACTTGAAGTCGCTTA 58.706 37.500 11.06 0.00 0.00 3.09
563 564 4.127171 ACATTGTACACTTGAAGTCGCTT 58.873 39.130 11.06 0.00 0.00 4.68
564 565 3.728845 ACATTGTACACTTGAAGTCGCT 58.271 40.909 11.06 0.00 0.00 4.93
565 566 4.455124 GAACATTGTACACTTGAAGTCGC 58.545 43.478 11.06 0.00 0.00 5.19
566 567 4.509970 TGGAACATTGTACACTTGAAGTCG 59.490 41.667 11.06 0.00 0.00 4.18
567 568 6.371809 TTGGAACATTGTACACTTGAAGTC 57.628 37.500 11.06 6.02 39.30 3.01
568 569 6.601613 TCTTTGGAACATTGTACACTTGAAGT 59.398 34.615 11.06 0.00 39.30 3.01
569 570 7.026631 TCTTTGGAACATTGTACACTTGAAG 57.973 36.000 11.06 0.00 39.30 3.02
570 571 7.397892 TTCTTTGGAACATTGTACACTTGAA 57.602 32.000 11.06 0.00 39.30 2.69
571 572 7.397892 TTTCTTTGGAACATTGTACACTTGA 57.602 32.000 11.06 0.00 39.30 3.02
574 575 6.605594 TCCTTTTCTTTGGAACATTGTACACT 59.394 34.615 0.00 0.00 39.30 3.55
575 576 6.801575 TCCTTTTCTTTGGAACATTGTACAC 58.198 36.000 0.00 0.00 39.30 2.90
576 577 7.411486 TTCCTTTTCTTTGGAACATTGTACA 57.589 32.000 0.00 0.00 39.30 2.90
579 580 8.869109 TCATATTCCTTTTCTTTGGAACATTGT 58.131 29.630 0.00 0.00 44.02 2.71
580 581 9.880157 ATCATATTCCTTTTCTTTGGAACATTG 57.120 29.630 0.00 0.00 44.02 2.82
582 583 9.880157 CAATCATATTCCTTTTCTTTGGAACAT 57.120 29.630 0.00 0.00 44.02 2.71
583 584 8.313292 CCAATCATATTCCTTTTCTTTGGAACA 58.687 33.333 0.00 0.00 44.02 3.18
585 586 8.434589 ACCAATCATATTCCTTTTCTTTGGAA 57.565 30.769 4.98 0.00 45.11 3.53
586 587 8.434589 AACCAATCATATTCCTTTTCTTTGGA 57.565 30.769 4.98 0.00 36.00 3.53
587 588 7.765819 GGAACCAATCATATTCCTTTTCTTTGG 59.234 37.037 0.00 0.00 39.11 3.28
588 589 8.313292 TGGAACCAATCATATTCCTTTTCTTTG 58.687 33.333 4.05 0.00 42.13 2.77
590 591 8.314021 GTTGGAACCAATCATATTCCTTTTCTT 58.686 33.333 9.53 0.00 42.13 2.52
592 593 7.840931 AGTTGGAACCAATCATATTCCTTTTC 58.159 34.615 9.53 0.00 42.13 2.29
593 594 7.454380 TGAGTTGGAACCAATCATATTCCTTTT 59.546 33.333 9.53 0.00 42.13 2.27
594 595 6.953520 TGAGTTGGAACCAATCATATTCCTTT 59.046 34.615 9.53 0.00 42.13 3.11
595 596 6.493166 TGAGTTGGAACCAATCATATTCCTT 58.507 36.000 9.53 0.00 42.13 3.36
596 597 6.078456 TGAGTTGGAACCAATCATATTCCT 57.922 37.500 9.53 0.00 42.13 3.36
597 598 6.603201 TCTTGAGTTGGAACCAATCATATTCC 59.397 38.462 9.53 0.00 42.00 3.01
598 599 7.630242 TCTTGAGTTGGAACCAATCATATTC 57.370 36.000 9.53 3.02 38.28 1.75
599 600 7.890127 TCTTCTTGAGTTGGAACCAATCATATT 59.110 33.333 9.53 0.00 38.28 1.28
600 601 7.405292 TCTTCTTGAGTTGGAACCAATCATAT 58.595 34.615 9.53 0.00 38.28 1.78
603 604 5.047566 TCTTCTTGAGTTGGAACCAATCA 57.952 39.130 9.53 10.80 38.28 2.57
604 605 6.391227 TTTCTTCTTGAGTTGGAACCAATC 57.609 37.500 9.53 8.69 38.28 2.67
605 606 6.381133 AGTTTTCTTCTTGAGTTGGAACCAAT 59.619 34.615 9.53 0.00 38.28 3.16
606 607 5.714806 AGTTTTCTTCTTGAGTTGGAACCAA 59.285 36.000 1.83 1.83 0.00 3.67
607 608 5.261216 AGTTTTCTTCTTGAGTTGGAACCA 58.739 37.500 0.00 0.00 0.00 3.67
608 609 5.357032 TGAGTTTTCTTCTTGAGTTGGAACC 59.643 40.000 0.00 0.00 0.00 3.62
609 610 6.436843 TGAGTTTTCTTCTTGAGTTGGAAC 57.563 37.500 0.00 0.00 0.00 3.62
610 611 7.461182 TTTGAGTTTTCTTCTTGAGTTGGAA 57.539 32.000 0.00 0.00 0.00 3.53
612 613 8.707938 ATTTTTGAGTTTTCTTCTTGAGTTGG 57.292 30.769 0.00 0.00 0.00 3.77
701 6477 4.850859 TCATCTATTTTACAACGTGCGG 57.149 40.909 0.00 0.00 0.00 5.69
770 6546 8.961294 ACAACTATACTCGTGTGTTTTAGTAG 57.039 34.615 0.00 0.00 0.00 2.57
771 6547 9.398170 GAACAACTATACTCGTGTGTTTTAGTA 57.602 33.333 0.00 0.00 0.00 1.82
772 6548 7.383300 GGAACAACTATACTCGTGTGTTTTAGT 59.617 37.037 0.00 0.49 0.00 2.24
773 6549 7.383029 TGGAACAACTATACTCGTGTGTTTTAG 59.617 37.037 0.00 0.00 31.92 1.85
802 6578 3.363341 TGGTCAAACGAAATTGCTTCC 57.637 42.857 0.00 0.00 0.00 3.46
864 6640 2.567497 GGACGGTGTGAAGGACGGA 61.567 63.158 0.00 0.00 0.00 4.69
881 6657 2.951642 ACACATGAGTTGAAGGTGTTGG 59.048 45.455 0.00 0.00 39.48 3.77
990 6768 8.641541 CAATGCTAGTATATGGGAAATGGTTTT 58.358 33.333 0.00 0.00 0.00 2.43
1041 6819 3.882888 CGATGGTATTAGTGGCAAATGGT 59.117 43.478 0.00 0.00 0.00 3.55
1563 7345 3.583086 TCGCGCATCTCGACGGAT 61.583 61.111 8.75 0.00 41.67 4.18
2082 7892 9.309224 AGGGCTTGTTTTGTAGTAGAAAATATT 57.691 29.630 8.31 0.00 0.00 1.28
2083 7893 8.879427 AGGGCTTGTTTTGTAGTAGAAAATAT 57.121 30.769 8.31 0.00 0.00 1.28
2084 7894 8.700439 AAGGGCTTGTTTTGTAGTAGAAAATA 57.300 30.769 8.31 3.51 0.00 1.40
2085 7895 7.255836 GGAAGGGCTTGTTTTGTAGTAGAAAAT 60.256 37.037 8.31 0.00 0.00 1.82
2086 7896 6.040054 GGAAGGGCTTGTTTTGTAGTAGAAAA 59.960 38.462 1.25 1.25 0.00 2.29
2087 7897 5.533528 GGAAGGGCTTGTTTTGTAGTAGAAA 59.466 40.000 0.00 0.00 0.00 2.52
2088 7898 5.067954 GGAAGGGCTTGTTTTGTAGTAGAA 58.932 41.667 0.00 0.00 0.00 2.10
2090 7900 4.652822 AGGAAGGGCTTGTTTTGTAGTAG 58.347 43.478 0.00 0.00 0.00 2.57
2092 7902 3.595190 AGGAAGGGCTTGTTTTGTAGT 57.405 42.857 0.00 0.00 0.00 2.73
2120 7932 9.399403 GAGTTTTTAGGCTTTGAACAGAAATAG 57.601 33.333 0.00 0.00 0.00 1.73
2122 7934 7.147742 TGGAGTTTTTAGGCTTTGAACAGAAAT 60.148 33.333 0.00 0.00 0.00 2.17
2131 7943 7.710475 TGAAAGAAATGGAGTTTTTAGGCTTTG 59.290 33.333 0.00 0.00 0.00 2.77
2234 8047 6.320418 AGAAAAACGGTGGTAATTTCTTCTGT 59.680 34.615 0.00 0.00 38.36 3.41
2335 8149 7.754069 TTGTTACATCAGCTGTTTCTTTTTG 57.246 32.000 14.67 2.93 39.39 2.44
2336 8150 8.196771 TGATTGTTACATCAGCTGTTTCTTTTT 58.803 29.630 14.67 0.00 39.39 1.94
2337 8151 7.715657 TGATTGTTACATCAGCTGTTTCTTTT 58.284 30.769 14.67 0.00 39.39 2.27
2341 8155 7.272084 GTCATTGATTGTTACATCAGCTGTTTC 59.728 37.037 14.67 0.00 39.39 2.78
2370 8184 1.404035 ACCAACGTTCAAGAACCTTGC 59.596 47.619 14.94 0.00 36.59 4.01
2373 8187 2.285977 GTGACCAACGTTCAAGAACCT 58.714 47.619 0.00 0.00 38.03 3.50
2397 8212 1.833630 TGCTATAGTGCTGACAAGGCT 59.166 47.619 0.84 0.00 0.00 4.58
2436 8252 7.490725 CGTGTCATTCCCATTATTTTAATGCAA 59.509 33.333 0.00 0.00 0.00 4.08
2437 8253 6.977502 CGTGTCATTCCCATTATTTTAATGCA 59.022 34.615 0.00 0.00 0.00 3.96
2454 8270 1.831389 GCTGTCGTGTGCGTGTCATT 61.831 55.000 0.00 0.00 39.49 2.57
2501 8317 7.783090 ACATAAGTCAATGTGAGATCATGTC 57.217 36.000 0.00 0.00 38.65 3.06
3008 8941 4.314121 GCTGAGAATTGAGCCTATACAGG 58.686 47.826 0.00 0.00 45.77 4.00
3035 8968 4.129737 CCACCTCCGCACGTCGAT 62.130 66.667 0.00 0.00 41.67 3.59
3090 9023 7.367285 TGACACTGATACTTAATTTGTTTGCC 58.633 34.615 0.00 0.00 0.00 4.52
3159 9092 9.709495 TTATTTATGGTAATACCGCGAACTATT 57.291 29.630 8.23 8.21 42.58 1.73
3234 9167 0.536687 TCCCGCTCCTCGATATCGTT 60.537 55.000 23.61 0.00 41.67 3.85
3269 9202 4.510340 GCACGGATCTTTTGTAATATCGGT 59.490 41.667 0.00 0.00 33.57 4.69
3398 9331 1.463444 GTGTTGCTTAGCACCCTAACG 59.537 52.381 6.34 0.00 38.71 3.18
3411 9344 2.287915 GACGATGAACACTTGTGTTGCT 59.712 45.455 21.74 9.86 31.35 3.91
3424 9357 5.914898 TGAGAAGATTGGTAGACGATGAA 57.085 39.130 0.00 0.00 0.00 2.57
3425 9358 6.461648 GGAATGAGAAGATTGGTAGACGATGA 60.462 42.308 0.00 0.00 0.00 2.92
3470 9403 3.126001 TCAAATGGCTTCTTCGTCACT 57.874 42.857 0.00 0.00 0.00 3.41
3519 9455 1.202302 GCGTCTCATCGTCTCCAATGA 60.202 52.381 0.00 0.00 0.00 2.57
3659 9595 1.210413 GCGAAGTGAGAGCTCGTCA 59.790 57.895 8.37 9.74 0.00 4.35
3686 9622 1.555075 TGTGATACCTCAAGGACAGCC 59.445 52.381 2.30 0.00 38.94 4.85
3877 9816 0.032130 TCGCTATGAACTCGATGGCC 59.968 55.000 0.00 0.00 0.00 5.36
3913 9852 3.751698 AGTCGAATTTGTACAAAGGGAGC 59.248 43.478 24.22 14.54 33.32 4.70
3941 9880 0.040067 CGAAAGTTCCAGTTGCCAGC 60.040 55.000 0.00 0.00 0.00 4.85
3954 9893 1.134220 TGACTGCCTGTTTCCGAAAGT 60.134 47.619 0.00 0.00 0.00 2.66
4091 10030 3.283751 TGGCACTCTCTAAGTAGCTCTC 58.716 50.000 0.00 0.00 36.07 3.20
4138 10077 9.658799 GGAATGCTAGCAATCTGATTACTAATA 57.341 33.333 27.44 0.00 0.00 0.98
4156 10095 3.053917 GGTCTACCCCTTTTGGAATGCTA 60.054 47.826 0.00 0.00 44.07 3.49
4246 10185 8.611654 TCAAGAATAAACTAACAGTGGTAACC 57.388 34.615 0.00 0.00 0.00 2.85
4273 10212 0.107654 ACTTGGGCTAATGCTCGGAC 60.108 55.000 0.00 0.00 44.15 4.79
4289 10234 0.804989 GCAGCTTATCACCGCAACTT 59.195 50.000 0.00 0.00 0.00 2.66
4466 10433 4.339814 CACCCAAACACAGCCTTTTACTTA 59.660 41.667 0.00 0.00 0.00 2.24
4499 10466 8.127327 CGTAAGATAGAAAATCTCGAGTTACCA 58.873 37.037 13.13 0.00 43.02 3.25
4518 10485 4.122046 GGTAAAATGGTACGCCGTAAGAT 58.878 43.478 0.00 0.00 43.02 2.40
4526 10493 3.302170 CGCAAAATGGTAAAATGGTACGC 59.698 43.478 0.00 0.00 0.00 4.42
4580 10550 6.051074 TGAGGACATCATTTACTATGTGCAG 58.949 40.000 9.18 0.00 44.23 4.41
4623 10606 5.985530 GGAAGCAAAACAGTTAAATCAGCTT 59.014 36.000 0.00 0.00 41.88 3.74
4701 10684 0.373716 GGTCGCGATCATTTCACACC 59.626 55.000 15.99 2.05 0.00 4.16
4707 10690 3.809832 CCATTCTTAGGTCGCGATCATTT 59.190 43.478 23.39 3.09 0.00 2.32
4758 10742 8.715998 GTCGTCATAATCAGATATGCAAAATCT 58.284 33.333 8.69 8.69 34.05 2.40
4770 10754 3.692791 CGACCAGTCGTCATAATCAGA 57.307 47.619 11.94 0.00 46.99 3.27
4795 10852 5.245531 ACGTATCATGTTTGACCATTCAGT 58.754 37.500 0.00 0.00 33.85 3.41
4797 10854 5.106357 CCAACGTATCATGTTTGACCATTCA 60.106 40.000 0.00 0.00 33.85 2.57
4817 10877 1.323534 CGTGCACGCTTATCTACCAAC 59.676 52.381 28.16 0.00 0.00 3.77
4839 10899 4.624024 TCGCTGTTCACTTATCTTAAACCG 59.376 41.667 0.00 0.00 0.00 4.44
4852 10925 3.781341 TTATTTCGTGTCGCTGTTCAC 57.219 42.857 0.00 0.00 0.00 3.18
4869 10942 4.344968 GGCAAGGGGAGTGCAATTAATTAT 59.655 41.667 0.00 0.00 44.07 1.28
4870 10943 3.704061 GGCAAGGGGAGTGCAATTAATTA 59.296 43.478 0.00 0.00 44.07 1.40
4885 10958 2.440247 GGTCCATTCCGGCAAGGG 60.440 66.667 10.04 10.04 41.52 3.95
4919 10992 3.425404 CTGTGCACCGGAATTTATTTCG 58.575 45.455 15.69 0.00 38.48 3.46
4920 10993 3.179048 GCTGTGCACCGGAATTTATTTC 58.821 45.455 15.69 0.00 0.00 2.17
4964 11055 1.805945 CGTAAGCTGTCAGGGCGAC 60.806 63.158 1.14 0.00 45.61 5.19
4969 11061 2.069273 CAAGGAACGTAAGCTGTCAGG 58.931 52.381 1.14 0.00 45.62 3.86
5008 11100 2.029666 GCAGATAGCGTCCGCCAT 59.970 61.111 8.23 0.00 43.17 4.40
5030 11122 2.718073 GCATTTGCCTGGCAGAGGG 61.718 63.158 22.77 15.47 43.07 4.30
5049 11141 9.128404 AGCAGTGTCACATTCATAATTCATATT 57.872 29.630 5.62 0.00 0.00 1.28
5066 11158 0.033920 CTGTACCTGCAGCAGTGTCA 59.966 55.000 21.26 14.30 0.00 3.58
5070 11162 1.625315 TCATTCTGTACCTGCAGCAGT 59.375 47.619 21.26 11.57 36.49 4.40
5071 11163 2.005451 GTCATTCTGTACCTGCAGCAG 58.995 52.381 16.23 16.23 36.49 4.24
5078 11170 3.572682 TCACGTTCTGTCATTCTGTACCT 59.427 43.478 0.00 0.00 0.00 3.08
5096 11188 2.196295 TTTGCCGGAAAAACTTCACG 57.804 45.000 4.67 0.00 0.00 4.35
5161 11253 0.180878 ACACGAAGAAAAACGGGGGA 59.819 50.000 0.00 0.00 37.23 4.81
5162 11254 1.532437 GTACACGAAGAAAAACGGGGG 59.468 52.381 0.00 0.00 37.23 5.40
5181 11273 0.792640 CGACAGCGAAATCTGCAAGT 59.207 50.000 0.00 0.00 40.82 3.16
5264 11357 1.978455 AATAGGAACGCGGGATGCCA 61.978 55.000 12.47 0.00 42.08 4.92
5288 11381 1.030457 GCATCTGGCTGGAATTCCTG 58.970 55.000 24.73 23.98 40.25 3.86
5296 11389 2.486982 GCTTATGTATGCATCTGGCTGG 59.513 50.000 0.19 0.00 45.15 4.85
5297 11390 3.058432 GTGCTTATGTATGCATCTGGCTG 60.058 47.826 0.19 0.00 45.15 4.85
5298 11391 3.144506 GTGCTTATGTATGCATCTGGCT 58.855 45.455 0.19 0.00 45.15 4.75
5300 11393 2.096069 GCGTGCTTATGTATGCATCTGG 60.096 50.000 0.19 0.00 41.45 3.86
5301 11394 2.545106 TGCGTGCTTATGTATGCATCTG 59.455 45.455 0.19 0.00 43.86 2.90
5302 11395 2.837498 TGCGTGCTTATGTATGCATCT 58.163 42.857 0.19 0.00 43.86 2.90
5305 11398 0.649993 CGTGCGTGCTTATGTATGCA 59.350 50.000 9.12 9.12 45.89 3.96
5306 11399 0.650512 ACGTGCGTGCTTATGTATGC 59.349 50.000 4.26 4.26 40.48 3.14
5307 11400 2.855370 TGTACGTGCGTGCTTATGTATG 59.145 45.455 13.27 0.00 0.00 2.39
5308 11401 3.153676 TGTACGTGCGTGCTTATGTAT 57.846 42.857 13.27 0.00 0.00 2.29
5309 11402 2.633199 TGTACGTGCGTGCTTATGTA 57.367 45.000 13.27 0.00 0.00 2.29
5310 11403 1.785768 TTGTACGTGCGTGCTTATGT 58.214 45.000 13.27 0.00 0.00 2.29
5311 11404 2.410392 TCTTTGTACGTGCGTGCTTATG 59.590 45.455 13.27 5.22 0.00 1.90
5312 11405 2.679450 TCTTTGTACGTGCGTGCTTAT 58.321 42.857 13.27 0.00 0.00 1.73
5314 11407 1.508632 ATCTTTGTACGTGCGTGCTT 58.491 45.000 13.27 0.00 0.00 3.91
5315 11408 1.459592 GAATCTTTGTACGTGCGTGCT 59.540 47.619 13.27 0.00 0.00 4.40
5360 11482 8.977412 TCTTTCTTTCCTTTGTTTTACCAAGAT 58.023 29.630 0.00 0.00 0.00 2.40
5366 11488 5.170803 CGCGTCTTTCTTTCCTTTGTTTTAC 59.829 40.000 0.00 0.00 0.00 2.01
5379 11501 2.548057 TCTGATTTTGCGCGTCTTTCTT 59.452 40.909 8.43 0.00 0.00 2.52
5380 11502 2.143122 TCTGATTTTGCGCGTCTTTCT 58.857 42.857 8.43 0.00 0.00 2.52
5381 11503 2.594529 TCTGATTTTGCGCGTCTTTC 57.405 45.000 8.43 0.00 0.00 2.62
5382 11504 2.650608 GTTCTGATTTTGCGCGTCTTT 58.349 42.857 8.43 0.00 0.00 2.52
5383 11505 1.398451 CGTTCTGATTTTGCGCGTCTT 60.398 47.619 8.43 0.00 0.00 3.01
5384 11506 0.163788 CGTTCTGATTTTGCGCGTCT 59.836 50.000 8.43 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.