Multiple sequence alignment - TraesCS2B01G372000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G372000 chr2B 100.000 3060 0 0 1 3060 530305534 530308593 0.000000e+00 5651.0
1 TraesCS2B01G372000 chr2B 82.201 309 36 12 10 305 380513573 380513271 6.550000e-62 248.0
2 TraesCS2B01G372000 chr2D 91.907 2496 77 32 371 2828 450234232 450236640 0.000000e+00 3374.0
3 TraesCS2B01G372000 chr2D 91.416 233 20 0 2828 3060 448632453 448632685 1.370000e-83 320.0
4 TraesCS2B01G372000 chr2D 79.282 362 44 14 1 342 625394320 625393970 1.100000e-54 224.0
5 TraesCS2B01G372000 chr2A 94.026 1858 53 17 371 2203 594579666 594581490 0.000000e+00 2763.0
6 TraesCS2B01G372000 chr2A 81.566 613 31 28 2237 2828 594581490 594582041 6.060000e-117 431.0
7 TraesCS2B01G372000 chr6B 77.250 611 111 20 1031 1629 445852386 445852980 1.760000e-87 333.0
8 TraesCS2B01G372000 chr6B 88.636 176 18 2 1752 1926 445853127 445853301 2.390000e-51 213.0
9 TraesCS2B01G372000 chr6B 88.957 163 15 3 1785 1946 198985186 198985026 6.690000e-47 198.0
10 TraesCS2B01G372000 chr6D 76.961 612 111 19 1031 1629 284849853 284850447 3.810000e-84 322.0
11 TraesCS2B01G372000 chr6D 87.245 196 16 6 1738 1926 284850575 284850768 6.650000e-52 215.0
12 TraesCS2B01G372000 chr6D 86.096 187 21 4 1761 1946 110443613 110443431 2.410000e-46 196.0
13 TraesCS2B01G372000 chr6A 76.509 613 112 21 1031 1629 405166893 405167487 3.830000e-79 305.0
14 TraesCS2B01G372000 chr6A 94.764 191 10 0 2870 3060 79670449 79670259 6.410000e-77 298.0
15 TraesCS2B01G372000 chr6A 79.811 317 49 7 3 304 80036601 80036917 1.850000e-52 217.0
16 TraesCS2B01G372000 chr6A 88.636 176 18 2 1752 1926 405167630 405167804 2.390000e-51 213.0
17 TraesCS2B01G372000 chr6A 87.234 188 17 6 1761 1946 134948360 134948178 1.110000e-49 207.0
18 TraesCS2B01G372000 chr3A 89.700 233 24 0 2828 3060 119685430 119685198 6.410000e-77 298.0
19 TraesCS2B01G372000 chr1A 89.700 233 24 0 2828 3060 335548934 335548702 6.410000e-77 298.0
20 TraesCS2B01G372000 chr5B 94.241 191 11 0 2870 3060 534469678 534469488 2.980000e-75 292.0
21 TraesCS2B01G372000 chr4D 94.241 191 11 0 2870 3060 116154108 116154298 2.980000e-75 292.0
22 TraesCS2B01G372000 chr4D 93.194 191 13 0 2870 3060 97780888 97781078 6.460000e-72 281.0
23 TraesCS2B01G372000 chr3D 94.086 186 11 0 2875 3060 433435516 433435331 1.800000e-72 283.0
24 TraesCS2B01G372000 chr3D 88.106 227 26 1 2834 3060 446110335 446110560 5.030000e-68 268.0
25 TraesCS2B01G372000 chrUn 84.146 246 28 6 1 239 289211200 289211441 8.540000e-56 228.0
26 TraesCS2B01G372000 chrUn 84.146 246 28 6 1 239 289217112 289217353 8.540000e-56 228.0
27 TraesCS2B01G372000 chrUn 84.146 246 28 6 1 239 356421254 356421013 8.540000e-56 228.0
28 TraesCS2B01G372000 chr7B 83.410 217 24 9 1108 1318 667071456 667071246 1.120000e-44 191.0
29 TraesCS2B01G372000 chr7B 87.059 170 16 6 1775 1944 667070582 667070419 1.450000e-43 187.0
30 TraesCS2B01G372000 chr7A 82.710 214 25 10 1108 1315 686937077 686937284 2.420000e-41 180.0
31 TraesCS2B01G372000 chr4B 78.095 315 43 13 10 302 493538431 493538121 3.140000e-40 176.0
32 TraesCS2B01G372000 chr7D 81.567 217 28 9 1108 1318 594730743 594730533 5.250000e-38 169.0
33 TraesCS2B01G372000 chr5A 97.500 40 1 0 2828 2867 53327328 53327367 5.470000e-08 69.4
34 TraesCS2B01G372000 chr5D 79.348 92 16 2 253 342 35557870 35557780 9.160000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G372000 chr2B 530305534 530308593 3059 False 5651.0 5651 100.0000 1 3060 1 chr2B.!!$F1 3059
1 TraesCS2B01G372000 chr2D 450234232 450236640 2408 False 3374.0 3374 91.9070 371 2828 1 chr2D.!!$F2 2457
2 TraesCS2B01G372000 chr2A 594579666 594582041 2375 False 1597.0 2763 87.7960 371 2828 2 chr2A.!!$F1 2457
3 TraesCS2B01G372000 chr6B 445852386 445853301 915 False 273.0 333 82.9430 1031 1926 2 chr6B.!!$F1 895
4 TraesCS2B01G372000 chr6D 284849853 284850768 915 False 268.5 322 82.1030 1031 1926 2 chr6D.!!$F1 895
5 TraesCS2B01G372000 chr6A 405166893 405167804 911 False 259.0 305 82.5725 1031 1926 2 chr6A.!!$F2 895

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.030773 GACGCTGATGACGATGCCTA 59.969 55.0 0.00 0.0 0.00 3.93 F
106 107 0.031314 ACGCTGATGACGATGCCTAG 59.969 55.0 0.00 0.0 0.00 3.02 F
270 271 0.037046 CAAAAATGGGTCAGGCCAGC 60.037 55.0 5.01 0.0 39.65 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1693 1735 0.798776 CCGTCACCAAGCAAGATGTC 59.201 55.000 0.00 0.0 0.0 3.06 R
1813 1888 0.973632 TCTTGCGCTTCTCCCTGTAA 59.026 50.000 9.73 0.0 0.0 2.41 R
2160 2235 4.750460 GCTCCCGCGTAATCATGA 57.250 55.556 4.92 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.331805 CGGAGGACGTCGCCATAG 59.668 66.667 21.36 6.13 37.93 2.23
24 25 2.027751 GGAGGACGTCGCCATAGC 59.972 66.667 18.07 0.00 35.24 2.97
25 26 2.027751 GAGGACGTCGCCATAGCC 59.972 66.667 9.92 0.00 34.57 3.93
26 27 2.442272 AGGACGTCGCCATAGCCT 60.442 61.111 9.92 0.00 34.57 4.58
27 28 2.279517 GGACGTCGCCATAGCCTG 60.280 66.667 9.92 0.00 34.57 4.85
29 30 3.792053 GACGTCGCCATAGCCTGGG 62.792 68.421 0.00 0.00 46.06 4.45
30 31 3.536917 CGTCGCCATAGCCTGGGA 61.537 66.667 5.16 0.00 46.06 4.37
31 32 2.423446 GTCGCCATAGCCTGGGAG 59.577 66.667 5.16 0.00 46.06 4.30
32 33 2.134287 GTCGCCATAGCCTGGGAGA 61.134 63.158 5.16 0.00 46.06 3.71
33 34 2.134287 TCGCCATAGCCTGGGAGAC 61.134 63.158 5.16 0.00 46.06 3.36
34 35 2.423446 GCCATAGCCTGGGAGACG 59.577 66.667 5.16 0.00 46.06 4.18
35 36 3.142393 CCATAGCCTGGGAGACGG 58.858 66.667 0.00 0.00 41.82 4.79
36 37 2.423446 CATAGCCTGGGAGACGGC 59.577 66.667 0.00 0.00 46.65 5.68
41 42 3.382832 CCTGGGAGACGGCGTTCT 61.383 66.667 16.19 12.98 0.00 3.01
42 43 2.182030 CTGGGAGACGGCGTTCTC 59.818 66.667 16.19 20.47 41.31 2.87
46 47 2.182030 GAGACGGCGTTCTCCTGG 59.818 66.667 16.19 0.00 36.74 4.45
47 48 3.358076 GAGACGGCGTTCTCCTGGG 62.358 68.421 16.19 0.00 36.74 4.45
51 52 4.785453 GGCGTTCTCCTGGGCTGG 62.785 72.222 0.00 0.00 0.00 4.85
53 54 4.785453 CGTTCTCCTGGGCTGGCC 62.785 72.222 14.23 14.23 0.00 5.36
75 76 4.719369 GCCAACGCTCGTCGACCT 62.719 66.667 10.58 0.00 41.67 3.85
76 77 2.504244 CCAACGCTCGTCGACCTC 60.504 66.667 10.58 0.00 41.67 3.85
77 78 2.254350 CAACGCTCGTCGACCTCA 59.746 61.111 10.58 0.00 41.67 3.86
78 79 2.081212 CAACGCTCGTCGACCTCAC 61.081 63.158 10.58 0.00 41.67 3.51
79 80 3.264866 AACGCTCGTCGACCTCACC 62.265 63.158 10.58 0.00 41.67 4.02
80 81 3.733960 CGCTCGTCGACCTCACCA 61.734 66.667 10.58 0.00 41.67 4.17
81 82 2.179517 GCTCGTCGACCTCACCAG 59.820 66.667 10.58 0.00 0.00 4.00
82 83 2.179517 CTCGTCGACCTCACCAGC 59.820 66.667 10.58 0.00 0.00 4.85
83 84 3.343788 CTCGTCGACCTCACCAGCC 62.344 68.421 10.58 0.00 0.00 4.85
84 85 4.436998 CGTCGACCTCACCAGCCC 62.437 72.222 10.58 0.00 0.00 5.19
85 86 4.083862 GTCGACCTCACCAGCCCC 62.084 72.222 3.51 0.00 0.00 5.80
88 89 4.083862 GACCTCACCAGCCCCGAC 62.084 72.222 0.00 0.00 0.00 4.79
97 98 4.148825 AGCCCCGACGCTGATGAC 62.149 66.667 0.00 0.00 37.82 3.06
99 100 3.822192 CCCCGACGCTGATGACGA 61.822 66.667 0.00 0.00 0.00 4.20
100 101 2.413351 CCCGACGCTGATGACGAT 59.587 61.111 0.00 0.00 0.00 3.73
101 102 1.946156 CCCGACGCTGATGACGATG 60.946 63.158 0.00 0.00 0.00 3.84
102 103 2.580470 CCGACGCTGATGACGATGC 61.580 63.158 0.00 0.00 0.00 3.91
103 104 2.580470 CGACGCTGATGACGATGCC 61.580 63.158 0.00 0.00 0.00 4.40
104 105 1.227089 GACGCTGATGACGATGCCT 60.227 57.895 0.00 0.00 0.00 4.75
105 106 0.030773 GACGCTGATGACGATGCCTA 59.969 55.000 0.00 0.00 0.00 3.93
106 107 0.031314 ACGCTGATGACGATGCCTAG 59.969 55.000 0.00 0.00 0.00 3.02
107 108 0.665670 CGCTGATGACGATGCCTAGG 60.666 60.000 3.67 3.67 0.00 3.02
108 109 0.320247 GCTGATGACGATGCCTAGGG 60.320 60.000 11.72 0.00 0.00 3.53
120 121 1.367840 CCTAGGGCAGCACGTATCC 59.632 63.158 0.00 0.00 0.00 2.59
121 122 1.115930 CCTAGGGCAGCACGTATCCT 61.116 60.000 0.00 0.00 0.00 3.24
122 123 0.315568 CTAGGGCAGCACGTATCCTC 59.684 60.000 0.00 0.00 0.00 3.71
123 124 1.113517 TAGGGCAGCACGTATCCTCC 61.114 60.000 0.00 0.00 0.00 4.30
124 125 2.435693 GGGCAGCACGTATCCTCCT 61.436 63.158 0.00 0.00 0.00 3.69
125 126 1.068250 GGCAGCACGTATCCTCCTC 59.932 63.158 0.00 0.00 0.00 3.71
126 127 1.299468 GCAGCACGTATCCTCCTCG 60.299 63.158 0.00 0.00 0.00 4.63
127 128 2.005960 GCAGCACGTATCCTCCTCGT 62.006 60.000 0.00 0.00 38.34 4.18
128 129 0.456221 CAGCACGTATCCTCCTCGTT 59.544 55.000 0.00 0.00 35.62 3.85
129 130 1.135083 CAGCACGTATCCTCCTCGTTT 60.135 52.381 0.00 0.00 35.62 3.60
130 131 1.549170 AGCACGTATCCTCCTCGTTTT 59.451 47.619 0.00 0.00 35.62 2.43
131 132 2.028385 AGCACGTATCCTCCTCGTTTTT 60.028 45.455 0.00 0.00 35.62 1.94
132 133 3.194116 AGCACGTATCCTCCTCGTTTTTA 59.806 43.478 0.00 0.00 35.62 1.52
133 134 3.550678 GCACGTATCCTCCTCGTTTTTAG 59.449 47.826 0.00 0.00 35.62 1.85
134 135 4.741342 CACGTATCCTCCTCGTTTTTAGT 58.259 43.478 0.00 0.00 35.62 2.24
135 136 5.166398 CACGTATCCTCCTCGTTTTTAGTT 58.834 41.667 0.00 0.00 35.62 2.24
136 137 5.636543 CACGTATCCTCCTCGTTTTTAGTTT 59.363 40.000 0.00 0.00 35.62 2.66
137 138 6.146673 CACGTATCCTCCTCGTTTTTAGTTTT 59.853 38.462 0.00 0.00 35.62 2.43
138 139 7.329226 CACGTATCCTCCTCGTTTTTAGTTTTA 59.671 37.037 0.00 0.00 35.62 1.52
139 140 8.037166 ACGTATCCTCCTCGTTTTTAGTTTTAT 58.963 33.333 0.00 0.00 34.07 1.40
140 141 8.876790 CGTATCCTCCTCGTTTTTAGTTTTATT 58.123 33.333 0.00 0.00 0.00 1.40
169 170 9.944663 ATGTGTTTAATAACTAATGTAATGCGG 57.055 29.630 0.00 0.00 35.24 5.69
170 171 9.163899 TGTGTTTAATAACTAATGTAATGCGGA 57.836 29.630 0.00 0.00 35.24 5.54
171 172 9.429600 GTGTTTAATAACTAATGTAATGCGGAC 57.570 33.333 0.00 0.00 35.24 4.79
172 173 9.386010 TGTTTAATAACTAATGTAATGCGGACT 57.614 29.630 0.00 0.00 35.24 3.85
173 174 9.859692 GTTTAATAACTAATGTAATGCGGACTC 57.140 33.333 0.00 0.00 0.00 3.36
174 175 9.826574 TTTAATAACTAATGTAATGCGGACTCT 57.173 29.630 0.00 0.00 0.00 3.24
175 176 9.826574 TTAATAACTAATGTAATGCGGACTCTT 57.173 29.630 0.00 0.00 0.00 2.85
176 177 7.715265 ATAACTAATGTAATGCGGACTCTTG 57.285 36.000 0.00 0.00 0.00 3.02
177 178 4.442706 ACTAATGTAATGCGGACTCTTGG 58.557 43.478 0.00 0.00 0.00 3.61
178 179 3.627395 AATGTAATGCGGACTCTTGGA 57.373 42.857 0.00 0.00 0.00 3.53
179 180 2.380084 TGTAATGCGGACTCTTGGAC 57.620 50.000 0.00 0.00 0.00 4.02
180 181 1.066430 TGTAATGCGGACTCTTGGACC 60.066 52.381 0.00 0.00 0.00 4.46
181 182 0.539986 TAATGCGGACTCTTGGACCC 59.460 55.000 0.00 0.00 0.00 4.46
182 183 1.201429 AATGCGGACTCTTGGACCCT 61.201 55.000 0.00 0.00 0.00 4.34
183 184 0.325296 ATGCGGACTCTTGGACCCTA 60.325 55.000 0.00 0.00 0.00 3.53
184 185 0.970937 TGCGGACTCTTGGACCCTAG 60.971 60.000 0.00 0.00 0.00 3.02
185 186 1.817209 CGGACTCTTGGACCCTAGC 59.183 63.158 0.00 0.00 0.00 3.42
186 187 1.677637 CGGACTCTTGGACCCTAGCC 61.678 65.000 0.00 0.00 0.00 3.93
187 188 1.677637 GGACTCTTGGACCCTAGCCG 61.678 65.000 0.00 0.00 0.00 5.52
188 189 1.677637 GACTCTTGGACCCTAGCCGG 61.678 65.000 0.00 0.00 0.00 6.13
189 190 3.081409 TCTTGGACCCTAGCCGGC 61.081 66.667 21.89 21.89 0.00 6.13
190 191 4.176752 CTTGGACCCTAGCCGGCC 62.177 72.222 26.15 6.12 0.00 6.13
196 197 4.055227 CCCTAGCCGGCCCCAAAA 62.055 66.667 26.15 0.43 0.00 2.44
197 198 2.278738 CCTAGCCGGCCCCAAAAT 59.721 61.111 26.15 4.77 0.00 1.82
198 199 1.381191 CCTAGCCGGCCCCAAAATT 60.381 57.895 26.15 3.86 0.00 1.82
199 200 0.106419 CCTAGCCGGCCCCAAAATTA 60.106 55.000 26.15 5.06 0.00 1.40
200 201 1.686741 CCTAGCCGGCCCCAAAATTAA 60.687 52.381 26.15 0.00 0.00 1.40
201 202 1.407618 CTAGCCGGCCCCAAAATTAAC 59.592 52.381 26.15 0.00 0.00 2.01
202 203 0.543174 AGCCGGCCCCAAAATTAACA 60.543 50.000 26.15 0.00 0.00 2.41
203 204 0.539518 GCCGGCCCCAAAATTAACAT 59.460 50.000 18.11 0.00 0.00 2.71
204 205 1.065782 GCCGGCCCCAAAATTAACATT 60.066 47.619 18.11 0.00 0.00 2.71
205 206 2.616765 GCCGGCCCCAAAATTAACATTT 60.617 45.455 18.11 0.00 33.72 2.32
206 207 3.680490 CCGGCCCCAAAATTAACATTTT 58.320 40.909 0.00 0.00 42.37 1.82
207 208 4.075682 CCGGCCCCAAAATTAACATTTTT 58.924 39.130 0.00 0.00 40.09 1.94
208 209 5.246307 CCGGCCCCAAAATTAACATTTTTA 58.754 37.500 0.00 0.00 40.09 1.52
209 210 5.705905 CCGGCCCCAAAATTAACATTTTTAA 59.294 36.000 0.00 0.00 40.09 1.52
210 211 6.375736 CCGGCCCCAAAATTAACATTTTTAAT 59.624 34.615 0.00 0.00 40.09 1.40
211 212 7.094162 CCGGCCCCAAAATTAACATTTTTAATT 60.094 33.333 0.00 0.00 40.09 1.40
212 213 8.300286 CGGCCCCAAAATTAACATTTTTAATTT 58.700 29.630 0.00 7.24 42.84 1.82
213 214 9.632807 GGCCCCAAAATTAACATTTTTAATTTC 57.367 29.630 11.67 2.67 41.21 2.17
255 256 3.707440 TCGTGCGCGAACTCAAAA 58.293 50.000 21.82 0.00 44.92 2.44
256 257 2.007549 TCGTGCGCGAACTCAAAAA 58.992 47.368 21.82 0.00 44.92 1.94
257 258 0.584396 TCGTGCGCGAACTCAAAAAT 59.416 45.000 21.82 0.00 44.92 1.82
258 259 0.697010 CGTGCGCGAACTCAAAAATG 59.303 50.000 16.08 0.00 41.33 2.32
259 260 1.052287 GTGCGCGAACTCAAAAATGG 58.948 50.000 12.10 0.00 0.00 3.16
260 261 0.039617 TGCGCGAACTCAAAAATGGG 60.040 50.000 12.10 0.00 0.00 4.00
261 262 0.039527 GCGCGAACTCAAAAATGGGT 60.040 50.000 12.10 0.00 0.00 4.51
262 263 1.963747 CGCGAACTCAAAAATGGGTC 58.036 50.000 0.00 0.00 0.00 4.46
263 264 1.265635 CGCGAACTCAAAAATGGGTCA 59.734 47.619 0.00 0.00 0.00 4.02
264 265 2.665519 CGCGAACTCAAAAATGGGTCAG 60.666 50.000 0.00 0.00 0.00 3.51
265 266 2.351738 GCGAACTCAAAAATGGGTCAGG 60.352 50.000 0.00 0.00 0.00 3.86
266 267 2.351738 CGAACTCAAAAATGGGTCAGGC 60.352 50.000 0.00 0.00 0.00 4.85
267 268 1.632589 ACTCAAAAATGGGTCAGGCC 58.367 50.000 0.00 0.00 0.00 5.19
268 269 1.133199 ACTCAAAAATGGGTCAGGCCA 60.133 47.619 5.01 0.00 39.65 5.36
269 270 1.547372 CTCAAAAATGGGTCAGGCCAG 59.453 52.381 5.01 0.00 39.65 4.85
270 271 0.037046 CAAAAATGGGTCAGGCCAGC 60.037 55.000 5.01 0.00 39.65 4.85
271 272 1.535204 AAAAATGGGTCAGGCCAGCG 61.535 55.000 5.01 0.00 39.65 5.18
272 273 2.713531 AAAATGGGTCAGGCCAGCGT 62.714 55.000 5.01 0.00 39.65 5.07
273 274 2.713531 AAATGGGTCAGGCCAGCGTT 62.714 55.000 5.01 0.00 39.65 4.84
274 275 3.925630 ATGGGTCAGGCCAGCGTTG 62.926 63.158 5.01 0.00 39.65 4.10
277 278 4.643387 GTCAGGCCAGCGTTGGGT 62.643 66.667 20.66 0.00 45.16 4.51
278 279 4.641645 TCAGGCCAGCGTTGGGTG 62.642 66.667 20.66 0.00 45.16 4.61
282 283 3.910490 GCCAGCGTTGGGTGCAAA 61.910 61.111 20.66 0.00 45.16 3.68
283 284 2.027460 CCAGCGTTGGGTGCAAAC 59.973 61.111 10.99 0.00 41.05 2.93
287 288 2.052590 CGTTGGGTGCAAACGTCG 60.053 61.111 12.80 1.41 44.07 5.12
288 289 2.526993 CGTTGGGTGCAAACGTCGA 61.527 57.895 12.80 0.00 44.07 4.20
289 290 1.837538 CGTTGGGTGCAAACGTCGAT 61.838 55.000 12.80 0.00 44.07 3.59
290 291 0.110373 GTTGGGTGCAAACGTCGATC 60.110 55.000 0.00 0.00 0.00 3.69
291 292 1.231958 TTGGGTGCAAACGTCGATCC 61.232 55.000 0.00 0.00 0.00 3.36
292 293 1.669760 GGGTGCAAACGTCGATCCA 60.670 57.895 0.00 0.00 0.00 3.41
293 294 1.231958 GGGTGCAAACGTCGATCCAA 61.232 55.000 0.00 0.00 0.00 3.53
294 295 0.589223 GGTGCAAACGTCGATCCAAA 59.411 50.000 0.00 0.00 0.00 3.28
295 296 1.662026 GGTGCAAACGTCGATCCAAAC 60.662 52.381 0.00 0.00 0.00 2.93
296 297 1.003331 GTGCAAACGTCGATCCAAACA 60.003 47.619 0.00 0.00 0.00 2.83
297 298 1.003331 TGCAAACGTCGATCCAAACAC 60.003 47.619 0.00 0.00 0.00 3.32
298 299 1.932160 CAAACGTCGATCCAAACACG 58.068 50.000 0.00 0.00 38.24 4.49
299 300 1.523515 CAAACGTCGATCCAAACACGA 59.476 47.619 0.00 0.00 36.14 4.35
300 301 1.855513 AACGTCGATCCAAACACGAA 58.144 45.000 0.00 0.00 37.77 3.85
301 302 1.855513 ACGTCGATCCAAACACGAAA 58.144 45.000 0.00 0.00 37.77 3.46
302 303 1.790623 ACGTCGATCCAAACACGAAAG 59.209 47.619 0.00 0.00 37.77 2.62
303 304 1.461888 CGTCGATCCAAACACGAAAGC 60.462 52.381 0.00 0.00 37.77 3.51
304 305 0.787787 TCGATCCAAACACGAAAGCG 59.212 50.000 0.00 0.00 44.79 4.68
305 306 0.179225 CGATCCAAACACGAAAGCGG 60.179 55.000 0.00 0.00 43.17 5.52
307 308 0.250553 ATCCAAACACGAAAGCGGGA 60.251 50.000 0.00 0.00 45.89 5.14
308 309 0.250553 TCCAAACACGAAAGCGGGAT 60.251 50.000 0.00 0.00 45.89 3.85
309 310 1.002201 TCCAAACACGAAAGCGGGATA 59.998 47.619 0.00 0.00 45.89 2.59
310 311 2.014128 CCAAACACGAAAGCGGGATAT 58.986 47.619 0.00 0.00 45.89 1.63
311 312 3.118702 TCCAAACACGAAAGCGGGATATA 60.119 43.478 0.00 0.00 45.89 0.86
312 313 3.623960 CCAAACACGAAAGCGGGATATAA 59.376 43.478 0.00 0.00 45.89 0.98
313 314 4.260620 CCAAACACGAAAGCGGGATATAAG 60.261 45.833 0.00 0.00 45.89 1.73
314 315 3.814005 ACACGAAAGCGGGATATAAGT 57.186 42.857 0.00 0.00 45.89 2.24
315 316 3.454375 ACACGAAAGCGGGATATAAGTG 58.546 45.455 0.00 0.00 45.89 3.16
316 317 3.118884 ACACGAAAGCGGGATATAAGTGT 60.119 43.478 0.00 0.00 45.89 3.55
317 318 3.245284 CACGAAAGCGGGATATAAGTGTG 59.755 47.826 0.00 0.00 45.89 3.82
318 319 2.221055 CGAAAGCGGGATATAAGTGTGC 59.779 50.000 0.00 0.00 0.00 4.57
319 320 3.467803 GAAAGCGGGATATAAGTGTGCT 58.532 45.455 0.00 0.00 0.00 4.40
320 321 2.533266 AGCGGGATATAAGTGTGCTG 57.467 50.000 0.00 0.00 0.00 4.41
321 322 1.070758 AGCGGGATATAAGTGTGCTGG 59.929 52.381 0.00 0.00 0.00 4.85
322 323 1.878102 GCGGGATATAAGTGTGCTGGG 60.878 57.143 0.00 0.00 0.00 4.45
323 324 1.878102 CGGGATATAAGTGTGCTGGGC 60.878 57.143 0.00 0.00 0.00 5.36
324 325 1.545651 GGGATATAAGTGTGCTGGGCC 60.546 57.143 0.00 0.00 0.00 5.80
325 326 1.142870 GGATATAAGTGTGCTGGGCCA 59.857 52.381 5.85 5.85 0.00 5.36
326 327 2.422803 GGATATAAGTGTGCTGGGCCAA 60.423 50.000 8.04 0.00 0.00 4.52
327 328 3.490348 GATATAAGTGTGCTGGGCCAAT 58.510 45.455 8.04 0.00 0.00 3.16
328 329 2.236489 ATAAGTGTGCTGGGCCAATT 57.764 45.000 8.04 0.00 0.00 2.32
329 330 1.544724 TAAGTGTGCTGGGCCAATTC 58.455 50.000 8.04 0.00 0.00 2.17
330 331 0.469705 AAGTGTGCTGGGCCAATTCA 60.470 50.000 8.04 2.89 0.00 2.57
331 332 0.469705 AGTGTGCTGGGCCAATTCAA 60.470 50.000 8.04 0.00 0.00 2.69
332 333 0.392336 GTGTGCTGGGCCAATTCAAA 59.608 50.000 8.04 0.00 0.00 2.69
333 334 0.392336 TGTGCTGGGCCAATTCAAAC 59.608 50.000 8.04 0.32 0.00 2.93
334 335 0.667184 GTGCTGGGCCAATTCAAACG 60.667 55.000 8.04 0.00 0.00 3.60
335 336 1.079888 GCTGGGCCAATTCAAACGG 60.080 57.895 8.04 0.00 0.00 4.44
336 337 1.531739 GCTGGGCCAATTCAAACGGA 61.532 55.000 8.04 0.00 0.00 4.69
337 338 0.243636 CTGGGCCAATTCAAACGGAC 59.756 55.000 8.04 0.00 0.00 4.79
338 339 0.468214 TGGGCCAATTCAAACGGACA 60.468 50.000 2.13 0.00 0.00 4.02
339 340 0.676736 GGGCCAATTCAAACGGACAA 59.323 50.000 4.39 0.00 0.00 3.18
340 341 1.069358 GGGCCAATTCAAACGGACAAA 59.931 47.619 4.39 0.00 0.00 2.83
341 342 2.483889 GGGCCAATTCAAACGGACAAAA 60.484 45.455 4.39 0.00 0.00 2.44
342 343 3.398406 GGCCAATTCAAACGGACAAAAT 58.602 40.909 0.00 0.00 0.00 1.82
343 344 3.431912 GGCCAATTCAAACGGACAAAATC 59.568 43.478 0.00 0.00 0.00 2.17
344 345 3.121113 GCCAATTCAAACGGACAAAATCG 59.879 43.478 0.00 0.00 0.00 3.34
345 346 3.672867 CCAATTCAAACGGACAAAATCGG 59.327 43.478 0.00 0.00 0.00 4.18
346 347 2.409152 TTCAAACGGACAAAATCGGC 57.591 45.000 0.00 0.00 0.00 5.54
347 348 0.236187 TCAAACGGACAAAATCGGCG 59.764 50.000 0.00 0.00 0.00 6.46
348 349 0.040781 CAAACGGACAAAATCGGCGT 60.041 50.000 6.85 0.00 0.00 5.68
349 350 0.236449 AAACGGACAAAATCGGCGTC 59.764 50.000 6.85 0.00 0.00 5.19
350 351 1.571215 AACGGACAAAATCGGCGTCC 61.571 55.000 6.85 4.11 44.79 4.79
351 352 3.975246 GGACAAAATCGGCGTCCA 58.025 55.556 6.85 0.00 46.98 4.02
352 353 2.249692 GGACAAAATCGGCGTCCAA 58.750 52.632 6.85 0.00 46.98 3.53
353 354 0.168128 GGACAAAATCGGCGTCCAAG 59.832 55.000 6.85 0.00 46.98 3.61
354 355 0.454452 GACAAAATCGGCGTCCAAGC 60.454 55.000 6.85 0.00 0.00 4.01
367 368 2.644992 CAAGCCGGTTGGAGTTGC 59.355 61.111 1.90 0.00 37.49 4.17
368 369 1.898574 CAAGCCGGTTGGAGTTGCT 60.899 57.895 1.90 0.00 37.49 3.91
369 370 1.600916 AAGCCGGTTGGAGTTGCTC 60.601 57.895 1.90 0.00 37.49 4.26
372 373 1.856265 GCCGGTTGGAGTTGCTCTTG 61.856 60.000 1.90 0.00 37.49 3.02
417 423 3.692406 GGACGGCTTCCACGGTCT 61.692 66.667 4.95 0.00 45.10 3.85
418 424 2.432628 GACGGCTTCCACGGTCTG 60.433 66.667 0.00 0.00 37.05 3.51
419 425 2.915659 ACGGCTTCCACGGTCTGA 60.916 61.111 0.00 0.00 35.23 3.27
420 426 2.432628 CGGCTTCCACGGTCTGAC 60.433 66.667 0.00 0.00 0.00 3.51
421 427 2.932234 CGGCTTCCACGGTCTGACT 61.932 63.158 7.85 0.00 0.00 3.41
422 428 1.371558 GGCTTCCACGGTCTGACTT 59.628 57.895 7.85 0.00 0.00 3.01
423 429 0.951040 GGCTTCCACGGTCTGACTTG 60.951 60.000 7.85 5.48 0.00 3.16
424 430 0.951040 GCTTCCACGGTCTGACTTGG 60.951 60.000 17.74 17.74 0.00 3.61
425 431 0.679505 CTTCCACGGTCTGACTTGGA 59.320 55.000 20.74 20.74 36.31 3.53
621 629 0.323087 ACGCCGGCCTAATTTTTCCT 60.323 50.000 23.46 0.00 0.00 3.36
622 630 1.065272 ACGCCGGCCTAATTTTTCCTA 60.065 47.619 23.46 0.00 0.00 2.94
739 757 3.148084 CGGACCCGGATAAGGCAT 58.852 61.111 0.73 0.00 35.56 4.40
744 765 2.281070 CCGGATAAGGCATGCGCT 60.281 61.111 12.44 7.25 46.18 5.92
804 825 4.115199 AGCGACTTCCATGGCCCC 62.115 66.667 6.96 0.00 0.00 5.80
842 863 3.431725 CTCGCCTCAAAACCCCGC 61.432 66.667 0.00 0.00 0.00 6.13
935 956 2.359602 CCTGGTCACTGCAGCCAG 60.360 66.667 24.43 24.43 46.83 4.85
959 980 3.947459 TGGTGGCGCTGGTGCTAA 61.947 61.111 7.64 0.00 36.97 3.09
967 988 1.303643 GCTGGTGCTAACTGGGCTT 60.304 57.895 0.00 0.00 36.03 4.35
1664 1706 2.281761 CACGAGCAAGGCCAAGGT 60.282 61.111 5.01 1.08 0.00 3.50
1693 1735 1.998315 CAGCGTTCTGACTTCTGATGG 59.002 52.381 0.00 0.00 42.95 3.51
1729 1771 1.598130 GGGACGCATGCAGGTATCC 60.598 63.158 19.57 14.74 0.00 2.59
1732 1774 0.601311 GACGCATGCAGGTATCCTCC 60.601 60.000 19.57 0.00 0.00 4.30
2144 2219 3.868077 AGCTTCGTCTAGCATTTGATCAC 59.132 43.478 0.00 0.00 43.68 3.06
2148 2223 5.268118 TCGTCTAGCATTTGATCACTCAT 57.732 39.130 0.00 0.00 0.00 2.90
2149 2224 5.284864 TCGTCTAGCATTTGATCACTCATC 58.715 41.667 0.00 0.00 0.00 2.92
2150 2225 5.045872 CGTCTAGCATTTGATCACTCATCA 58.954 41.667 0.00 0.00 39.99 3.07
2223 2299 3.287222 CTCCTTAATTTTGCCCGATCCA 58.713 45.455 0.00 0.00 0.00 3.41
2229 2305 6.239289 CCTTAATTTTGCCCGATCCATGTAAT 60.239 38.462 0.00 0.00 0.00 1.89
2234 2310 4.647424 TGCCCGATCCATGTAATTTTTC 57.353 40.909 0.00 0.00 0.00 2.29
2314 2415 6.371548 CACTTTTACTAATCCACTTGCTGCTA 59.628 38.462 0.00 0.00 0.00 3.49
2315 2416 7.066284 CACTTTTACTAATCCACTTGCTGCTAT 59.934 37.037 0.00 0.00 0.00 2.97
2316 2417 7.281100 ACTTTTACTAATCCACTTGCTGCTATC 59.719 37.037 0.00 0.00 0.00 2.08
2317 2418 3.722147 ACTAATCCACTTGCTGCTATCG 58.278 45.455 0.00 0.00 0.00 2.92
2318 2419 1.303309 AATCCACTTGCTGCTATCGC 58.697 50.000 0.00 0.00 0.00 4.58
2319 2420 0.467384 ATCCACTTGCTGCTATCGCT 59.533 50.000 0.00 0.00 36.97 4.93
2320 2421 0.179100 TCCACTTGCTGCTATCGCTC 60.179 55.000 0.00 0.00 36.97 5.03
2321 2422 1.485838 CCACTTGCTGCTATCGCTCG 61.486 60.000 0.00 0.00 36.97 5.03
2322 2423 1.880340 ACTTGCTGCTATCGCTCGC 60.880 57.895 0.00 0.00 36.97 5.03
2323 2424 1.879884 CTTGCTGCTATCGCTCGCA 60.880 57.895 0.00 3.37 39.95 5.10
2324 2425 1.220169 CTTGCTGCTATCGCTCGCAT 61.220 55.000 0.00 0.00 40.79 4.73
2325 2426 0.811219 TTGCTGCTATCGCTCGCATT 60.811 50.000 0.00 0.00 40.79 3.56
2326 2427 0.031994 TGCTGCTATCGCTCGCATTA 59.968 50.000 0.00 0.00 37.98 1.90
2327 2428 0.436531 GCTGCTATCGCTCGCATTAC 59.563 55.000 0.00 0.00 35.32 1.89
2328 2429 1.932604 GCTGCTATCGCTCGCATTACT 60.933 52.381 0.00 0.00 35.32 2.24
2329 2430 1.718178 CTGCTATCGCTCGCATTACTG 59.282 52.381 0.00 0.00 35.32 2.74
2330 2431 0.436531 GCTATCGCTCGCATTACTGC 59.563 55.000 0.00 0.00 45.31 4.40
2331 2432 1.932604 GCTATCGCTCGCATTACTGCT 60.933 52.381 3.38 0.00 46.65 4.24
2332 2433 1.718178 CTATCGCTCGCATTACTGCTG 59.282 52.381 3.38 0.00 46.65 4.41
2333 2434 1.493950 ATCGCTCGCATTACTGCTGC 61.494 55.000 3.38 6.66 46.65 5.25
2334 2435 2.169789 CGCTCGCATTACTGCTGCT 61.170 57.895 14.37 0.00 46.65 4.24
2335 2436 1.699656 CGCTCGCATTACTGCTGCTT 61.700 55.000 14.37 0.00 46.65 3.91
2336 2437 0.449388 GCTCGCATTACTGCTGCTTT 59.551 50.000 0.00 0.00 46.65 3.51
2337 2438 1.665679 GCTCGCATTACTGCTGCTTTA 59.334 47.619 0.00 0.00 46.65 1.85
2338 2439 2.286067 GCTCGCATTACTGCTGCTTTAG 60.286 50.000 0.00 0.00 46.65 1.85
2339 2440 2.279741 TCGCATTACTGCTGCTTTAGG 58.720 47.619 0.00 0.00 46.65 2.69
2340 2441 1.331756 CGCATTACTGCTGCTTTAGGG 59.668 52.381 0.00 0.00 46.65 3.53
2341 2442 1.066152 GCATTACTGCTGCTTTAGGGC 59.934 52.381 0.00 0.00 45.32 5.19
2342 2443 2.368439 CATTACTGCTGCTTTAGGGCA 58.632 47.619 0.00 0.00 40.15 5.36
2352 2453 3.766545 TGCTTTAGGGCAGAACTTTCAT 58.233 40.909 0.00 0.00 37.29 2.57
2354 2455 3.674410 GCTTTAGGGCAGAACTTTCATGC 60.674 47.826 0.00 5.38 39.25 4.06
2364 2465 5.472148 CAGAACTTTCATGCCATTTTGCTA 58.528 37.500 0.00 0.00 0.00 3.49
2370 2471 4.642445 TCATGCCATTTTGCTATCACTG 57.358 40.909 0.00 0.00 0.00 3.66
2427 2536 4.514816 TGTTGCTGAAATTTGACGATCAGA 59.485 37.500 6.73 0.00 41.38 3.27
2435 2544 6.536582 TGAAATTTGACGATCAGAAGAGATCC 59.463 38.462 0.00 0.00 41.03 3.36
2463 2572 6.697019 GTCTTTCTTTAATATACGCGGTGGTA 59.303 38.462 12.47 0.00 0.00 3.25
2489 2598 2.676471 GCCATTCCGCCACTGGTT 60.676 61.111 0.00 0.00 32.42 3.67
2511 2620 2.942804 AGCTCTGAGATCTCGAATGGA 58.057 47.619 17.76 9.39 0.00 3.41
2514 2623 4.344679 AGCTCTGAGATCTCGAATGGAAAT 59.655 41.667 17.76 0.00 0.00 2.17
2515 2624 4.448395 GCTCTGAGATCTCGAATGGAAATG 59.552 45.833 17.76 5.39 0.00 2.32
2528 2643 1.017387 GGAAATGTCCGATGGCTGAC 58.983 55.000 0.00 0.00 33.05 3.51
2582 2698 0.891373 TTTCTCTCTCACGGGCTCAG 59.109 55.000 0.00 0.00 0.00 3.35
2644 2772 0.727398 GCAAATGCGACAGTACCTCC 59.273 55.000 0.00 0.00 0.00 4.30
2645 2773 1.676014 GCAAATGCGACAGTACCTCCT 60.676 52.381 0.00 0.00 0.00 3.69
2646 2774 2.418197 GCAAATGCGACAGTACCTCCTA 60.418 50.000 0.00 0.00 0.00 2.94
2647 2775 3.741388 GCAAATGCGACAGTACCTCCTAT 60.741 47.826 0.00 0.00 0.00 2.57
2648 2776 4.500887 GCAAATGCGACAGTACCTCCTATA 60.501 45.833 0.00 0.00 0.00 1.31
2690 2818 2.179427 TCCAGTGGTGAGATTCGATGT 58.821 47.619 9.54 0.00 0.00 3.06
2707 2835 1.404843 TGTTTTTCCCTTTCCACCGG 58.595 50.000 0.00 0.00 0.00 5.28
2721 2849 2.067605 ACCGGTCAACCACAGGACA 61.068 57.895 0.00 0.00 42.83 4.02
2757 2885 2.806818 CGAGTTGCGCTATAGACTAGGA 59.193 50.000 9.73 0.00 0.00 2.94
2828 2958 2.821437 TGTCTCCCTCTTCCCTGTAAG 58.179 52.381 0.00 0.00 0.00 2.34
2829 2959 2.382305 TGTCTCCCTCTTCCCTGTAAGA 59.618 50.000 0.00 0.00 34.07 2.10
2847 2977 2.977772 GAGCATCTACAGCCAGACTT 57.022 50.000 0.00 0.00 0.00 3.01
2848 2978 2.820330 GAGCATCTACAGCCAGACTTC 58.180 52.381 0.00 0.00 0.00 3.01
2849 2979 1.135915 AGCATCTACAGCCAGACTTCG 59.864 52.381 0.00 0.00 0.00 3.79
2850 2980 1.565305 CATCTACAGCCAGACTTCGC 58.435 55.000 0.00 0.00 0.00 4.70
2851 2981 1.134995 CATCTACAGCCAGACTTCGCA 60.135 52.381 0.00 0.00 0.00 5.10
2852 2982 0.966179 TCTACAGCCAGACTTCGCAA 59.034 50.000 0.00 0.00 0.00 4.85
2853 2983 1.343142 TCTACAGCCAGACTTCGCAAA 59.657 47.619 0.00 0.00 0.00 3.68
2854 2984 2.028112 TCTACAGCCAGACTTCGCAAAT 60.028 45.455 0.00 0.00 0.00 2.32
2855 2985 1.609208 ACAGCCAGACTTCGCAAATT 58.391 45.000 0.00 0.00 0.00 1.82
2856 2986 1.537202 ACAGCCAGACTTCGCAAATTC 59.463 47.619 0.00 0.00 0.00 2.17
2857 2987 0.798776 AGCCAGACTTCGCAAATTCG 59.201 50.000 0.00 0.00 0.00 3.34
2858 2988 0.179189 GCCAGACTTCGCAAATTCGG 60.179 55.000 0.00 0.00 0.00 4.30
2859 2989 0.179189 CCAGACTTCGCAAATTCGGC 60.179 55.000 0.00 0.00 0.00 5.54
2860 2990 0.179189 CAGACTTCGCAAATTCGGCC 60.179 55.000 0.00 0.00 0.00 6.13
2861 2991 1.136774 GACTTCGCAAATTCGGCCC 59.863 57.895 0.00 0.00 0.00 5.80
2862 2992 2.100216 CTTCGCAAATTCGGCCCG 59.900 61.111 0.00 0.00 0.00 6.13
2863 2993 2.670251 TTCGCAAATTCGGCCCGT 60.670 55.556 1.63 0.00 0.00 5.28
2864 2994 2.577763 CTTCGCAAATTCGGCCCGTC 62.578 60.000 1.63 0.00 0.00 4.79
2865 2995 3.427425 CGCAAATTCGGCCCGTCA 61.427 61.111 1.63 0.00 0.00 4.35
2866 2996 2.958576 GCAAATTCGGCCCGTCAA 59.041 55.556 1.63 0.00 0.00 3.18
2867 2997 1.287503 GCAAATTCGGCCCGTCAAA 59.712 52.632 1.63 0.00 0.00 2.69
2868 2998 0.319125 GCAAATTCGGCCCGTCAAAA 60.319 50.000 1.63 0.00 0.00 2.44
2869 2999 1.696988 CAAATTCGGCCCGTCAAAAG 58.303 50.000 1.63 0.00 0.00 2.27
2870 3000 0.038618 AAATTCGGCCCGTCAAAAGC 60.039 50.000 1.63 0.00 0.00 3.51
2871 3001 1.873270 AATTCGGCCCGTCAAAAGCC 61.873 55.000 1.63 0.00 43.53 4.35
2896 3026 4.650377 GCATCCGGATGGCCCCTC 62.650 72.222 38.49 21.26 39.16 4.30
2897 3027 3.170672 CATCCGGATGGCCCCTCA 61.171 66.667 32.99 0.00 35.24 3.86
2898 3028 2.121781 ATCCGGATGGCCCCTCAT 60.122 61.111 18.33 0.00 34.14 2.90
2899 3029 1.160870 ATCCGGATGGCCCCTCATA 59.839 57.895 18.33 0.00 34.14 2.15
2900 3030 0.253347 ATCCGGATGGCCCCTCATAT 60.253 55.000 18.33 0.00 34.14 1.78
2901 3031 0.475632 TCCGGATGGCCCCTCATATT 60.476 55.000 0.00 0.00 34.14 1.28
2902 3032 0.405585 CCGGATGGCCCCTCATATTT 59.594 55.000 0.00 0.00 0.00 1.40
2903 3033 1.203050 CCGGATGGCCCCTCATATTTT 60.203 52.381 0.00 0.00 0.00 1.82
2904 3034 2.162681 CGGATGGCCCCTCATATTTTC 58.837 52.381 0.00 0.00 0.00 2.29
2905 3035 2.224867 CGGATGGCCCCTCATATTTTCT 60.225 50.000 0.00 0.00 0.00 2.52
2906 3036 3.751893 CGGATGGCCCCTCATATTTTCTT 60.752 47.826 0.00 0.00 0.00 2.52
2907 3037 3.829026 GGATGGCCCCTCATATTTTCTTC 59.171 47.826 0.00 0.00 0.00 2.87
2908 3038 3.312736 TGGCCCCTCATATTTTCTTCC 57.687 47.619 0.00 0.00 0.00 3.46
2909 3039 2.230660 GGCCCCTCATATTTTCTTCCG 58.769 52.381 0.00 0.00 0.00 4.30
2910 3040 2.422945 GGCCCCTCATATTTTCTTCCGT 60.423 50.000 0.00 0.00 0.00 4.69
2911 3041 2.618709 GCCCCTCATATTTTCTTCCGTG 59.381 50.000 0.00 0.00 0.00 4.94
2912 3042 2.618709 CCCCTCATATTTTCTTCCGTGC 59.381 50.000 0.00 0.00 0.00 5.34
2913 3043 3.278574 CCCTCATATTTTCTTCCGTGCA 58.721 45.455 0.00 0.00 0.00 4.57
2914 3044 3.885297 CCCTCATATTTTCTTCCGTGCAT 59.115 43.478 0.00 0.00 0.00 3.96
2915 3045 4.023707 CCCTCATATTTTCTTCCGTGCATC 60.024 45.833 0.00 0.00 0.00 3.91
2916 3046 4.023707 CCTCATATTTTCTTCCGTGCATCC 60.024 45.833 0.00 0.00 0.00 3.51
2917 3047 4.522114 TCATATTTTCTTCCGTGCATCCA 58.478 39.130 0.00 0.00 0.00 3.41
2918 3048 4.335315 TCATATTTTCTTCCGTGCATCCAC 59.665 41.667 0.00 0.00 38.62 4.02
2919 3049 1.974265 TTTTCTTCCGTGCATCCACA 58.026 45.000 0.00 0.00 42.17 4.17
2920 3050 2.198827 TTTCTTCCGTGCATCCACAT 57.801 45.000 0.00 0.00 42.17 3.21
2921 3051 3.342377 TTTCTTCCGTGCATCCACATA 57.658 42.857 0.00 0.00 42.17 2.29
2922 3052 3.558931 TTCTTCCGTGCATCCACATAT 57.441 42.857 0.00 0.00 42.17 1.78
2923 3053 3.111853 TCTTCCGTGCATCCACATATC 57.888 47.619 0.00 0.00 42.17 1.63
2924 3054 2.700371 TCTTCCGTGCATCCACATATCT 59.300 45.455 0.00 0.00 42.17 1.98
2925 3055 2.820059 TCCGTGCATCCACATATCTC 57.180 50.000 0.00 0.00 42.17 2.75
2926 3056 2.038659 TCCGTGCATCCACATATCTCA 58.961 47.619 0.00 0.00 42.17 3.27
2927 3057 2.433970 TCCGTGCATCCACATATCTCAA 59.566 45.455 0.00 0.00 42.17 3.02
2928 3058 3.118445 TCCGTGCATCCACATATCTCAAA 60.118 43.478 0.00 0.00 42.17 2.69
2929 3059 3.817084 CCGTGCATCCACATATCTCAAAT 59.183 43.478 0.00 0.00 42.17 2.32
2930 3060 4.083643 CCGTGCATCCACATATCTCAAATC 60.084 45.833 0.00 0.00 42.17 2.17
2931 3061 4.083643 CGTGCATCCACATATCTCAAATCC 60.084 45.833 0.00 0.00 42.17 3.01
2932 3062 4.067192 TGCATCCACATATCTCAAATCCG 58.933 43.478 0.00 0.00 0.00 4.18
2933 3063 3.438087 GCATCCACATATCTCAAATCCGG 59.562 47.826 0.00 0.00 0.00 5.14
2934 3064 4.803924 GCATCCACATATCTCAAATCCGGA 60.804 45.833 6.61 6.61 0.00 5.14
2935 3065 4.336889 TCCACATATCTCAAATCCGGAC 57.663 45.455 6.12 0.00 0.00 4.79
2936 3066 3.967326 TCCACATATCTCAAATCCGGACT 59.033 43.478 6.12 0.00 0.00 3.85
2937 3067 4.039245 TCCACATATCTCAAATCCGGACTC 59.961 45.833 6.12 0.00 0.00 3.36
2938 3068 4.039730 CCACATATCTCAAATCCGGACTCT 59.960 45.833 6.12 0.00 0.00 3.24
2939 3069 5.226396 CACATATCTCAAATCCGGACTCTC 58.774 45.833 6.12 0.00 0.00 3.20
2940 3070 4.895889 ACATATCTCAAATCCGGACTCTCA 59.104 41.667 6.12 0.00 0.00 3.27
2941 3071 5.363868 ACATATCTCAAATCCGGACTCTCAA 59.636 40.000 6.12 0.00 0.00 3.02
2942 3072 4.826274 ATCTCAAATCCGGACTCTCAAA 57.174 40.909 6.12 0.00 0.00 2.69
2943 3073 4.826274 TCTCAAATCCGGACTCTCAAAT 57.174 40.909 6.12 0.00 0.00 2.32
2944 3074 4.759782 TCTCAAATCCGGACTCTCAAATC 58.240 43.478 6.12 0.00 0.00 2.17
2945 3075 3.873910 TCAAATCCGGACTCTCAAATCC 58.126 45.455 6.12 0.00 0.00 3.01
2946 3076 3.263170 TCAAATCCGGACTCTCAAATCCA 59.737 43.478 6.12 0.00 34.35 3.41
2947 3077 4.080356 TCAAATCCGGACTCTCAAATCCAT 60.080 41.667 6.12 0.00 34.35 3.41
2948 3078 2.988010 TCCGGACTCTCAAATCCATG 57.012 50.000 0.00 0.00 34.35 3.66
2949 3079 1.134401 TCCGGACTCTCAAATCCATGC 60.134 52.381 0.00 0.00 34.35 4.06
2950 3080 1.407299 CCGGACTCTCAAATCCATGCA 60.407 52.381 0.00 0.00 34.35 3.96
2951 3081 2.358957 CGGACTCTCAAATCCATGCAA 58.641 47.619 0.00 0.00 34.35 4.08
2952 3082 2.749076 CGGACTCTCAAATCCATGCAAA 59.251 45.455 0.00 0.00 34.35 3.68
2953 3083 3.379372 CGGACTCTCAAATCCATGCAAAT 59.621 43.478 0.00 0.00 34.35 2.32
2954 3084 4.576053 CGGACTCTCAAATCCATGCAAATA 59.424 41.667 0.00 0.00 34.35 1.40
2955 3085 5.504665 CGGACTCTCAAATCCATGCAAATAC 60.505 44.000 0.00 0.00 34.35 1.89
2956 3086 5.357878 GGACTCTCAAATCCATGCAAATACA 59.642 40.000 0.00 0.00 34.87 2.29
2957 3087 6.199937 ACTCTCAAATCCATGCAAATACAC 57.800 37.500 0.00 0.00 0.00 2.90
2958 3088 5.163723 ACTCTCAAATCCATGCAAATACACG 60.164 40.000 0.00 0.00 0.00 4.49
2959 3089 3.768406 TCAAATCCATGCAAATACACGC 58.232 40.909 0.00 0.00 0.00 5.34
2960 3090 3.192212 TCAAATCCATGCAAATACACGCA 59.808 39.130 0.00 0.00 43.45 5.24
2965 3095 2.456942 ATGCAAATACACGCATGTCG 57.543 45.000 0.00 7.79 46.78 4.35
2966 3096 1.433534 TGCAAATACACGCATGTCGA 58.566 45.000 14.88 0.00 40.48 4.20
2967 3097 2.006169 TGCAAATACACGCATGTCGAT 58.994 42.857 14.88 6.47 40.48 3.59
2968 3098 2.030335 TGCAAATACACGCATGTCGATC 59.970 45.455 14.88 0.00 40.48 3.69
2969 3099 2.030335 GCAAATACACGCATGTCGATCA 59.970 45.455 14.88 0.00 40.48 2.92
2970 3100 3.303329 GCAAATACACGCATGTCGATCAT 60.303 43.478 14.88 0.00 40.48 2.45
2979 3109 3.474693 CATGTCGATCATGCAACACAA 57.525 42.857 12.77 0.00 45.69 3.33
2980 3110 4.023739 CATGTCGATCATGCAACACAAT 57.976 40.909 12.77 0.00 45.69 2.71
2981 3111 3.474693 TGTCGATCATGCAACACAATG 57.525 42.857 0.00 0.00 0.00 2.82
2982 3112 2.813172 TGTCGATCATGCAACACAATGT 59.187 40.909 0.00 0.00 0.00 2.71
2983 3113 3.120234 TGTCGATCATGCAACACAATGTC 60.120 43.478 0.00 0.00 0.00 3.06
2984 3114 3.072944 TCGATCATGCAACACAATGTCA 58.927 40.909 0.00 0.00 0.00 3.58
2985 3115 3.120234 TCGATCATGCAACACAATGTCAC 60.120 43.478 0.00 0.00 0.00 3.67
2986 3116 3.365164 CGATCATGCAACACAATGTCACA 60.365 43.478 0.00 0.00 0.00 3.58
2987 3117 3.352554 TCATGCAACACAATGTCACAC 57.647 42.857 0.00 0.00 0.00 3.82
2988 3118 2.045586 CATGCAACACAATGTCACACG 58.954 47.619 0.00 0.00 0.00 4.49
2989 3119 1.090728 TGCAACACAATGTCACACGT 58.909 45.000 0.00 0.00 0.00 4.49
2990 3120 2.280628 TGCAACACAATGTCACACGTA 58.719 42.857 0.00 0.00 0.00 3.57
2991 3121 2.678336 TGCAACACAATGTCACACGTAA 59.322 40.909 0.00 0.00 0.00 3.18
2992 3122 3.127030 TGCAACACAATGTCACACGTAAA 59.873 39.130 0.00 0.00 0.00 2.01
2993 3123 4.201960 TGCAACACAATGTCACACGTAAAT 60.202 37.500 0.00 0.00 0.00 1.40
2994 3124 5.007724 TGCAACACAATGTCACACGTAAATA 59.992 36.000 0.00 0.00 0.00 1.40
2995 3125 5.563751 GCAACACAATGTCACACGTAAATAG 59.436 40.000 0.00 0.00 0.00 1.73
2996 3126 5.277601 ACACAATGTCACACGTAAATAGC 57.722 39.130 0.00 0.00 0.00 2.97
2997 3127 4.752604 ACACAATGTCACACGTAAATAGCA 59.247 37.500 0.00 0.00 0.00 3.49
2998 3128 5.237561 ACACAATGTCACACGTAAATAGCAA 59.762 36.000 0.00 0.00 0.00 3.91
2999 3129 6.072728 ACACAATGTCACACGTAAATAGCAAT 60.073 34.615 0.00 0.00 0.00 3.56
3000 3130 6.801377 CACAATGTCACACGTAAATAGCAATT 59.199 34.615 0.00 0.00 0.00 2.32
3001 3131 7.325821 CACAATGTCACACGTAAATAGCAATTT 59.674 33.333 0.00 0.00 38.80 1.82
3002 3132 7.865385 ACAATGTCACACGTAAATAGCAATTTT 59.135 29.630 0.00 0.00 36.67 1.82
3003 3133 8.698854 CAATGTCACACGTAAATAGCAATTTTT 58.301 29.630 0.00 0.00 36.67 1.94
3004 3134 7.616103 TGTCACACGTAAATAGCAATTTTTG 57.384 32.000 0.00 0.00 36.67 2.44
3005 3135 6.638873 TGTCACACGTAAATAGCAATTTTTGG 59.361 34.615 0.00 0.00 36.67 3.28
3006 3136 6.639279 GTCACACGTAAATAGCAATTTTTGGT 59.361 34.615 0.00 0.00 44.64 3.67
3007 3137 7.804129 GTCACACGTAAATAGCAATTTTTGGTA 59.196 33.333 2.07 2.07 46.32 3.25
3018 3148 7.408756 AGCAATTTTTGGTATCAAGCATAGA 57.591 32.000 0.44 0.00 40.04 1.98
3019 3149 8.015185 AGCAATTTTTGGTATCAAGCATAGAT 57.985 30.769 0.44 0.00 40.04 1.98
3020 3150 9.135189 AGCAATTTTTGGTATCAAGCATAGATA 57.865 29.630 0.44 0.00 40.04 1.98
3021 3151 9.403110 GCAATTTTTGGTATCAAGCATAGATAG 57.597 33.333 0.00 0.00 33.98 2.08
3024 3154 9.632638 ATTTTTGGTATCAAGCATAGATAGTGT 57.367 29.630 0.00 0.00 33.98 3.55
3025 3155 9.461312 TTTTTGGTATCAAGCATAGATAGTGTT 57.539 29.630 0.00 0.00 33.98 3.32
3026 3156 9.461312 TTTTGGTATCAAGCATAGATAGTGTTT 57.539 29.630 0.00 0.00 33.98 2.83
3028 3158 9.542462 TTGGTATCAAGCATAGATAGTGTTTAC 57.458 33.333 0.00 0.00 32.06 2.01
3029 3159 8.700973 TGGTATCAAGCATAGATAGTGTTTACA 58.299 33.333 0.00 0.00 0.00 2.41
3030 3160 9.712305 GGTATCAAGCATAGATAGTGTTTACAT 57.288 33.333 0.00 0.00 0.00 2.29
3056 3186 8.729805 AAAATTTATTTGAAGTGCCAAACTCA 57.270 26.923 0.00 0.00 38.56 3.41
3057 3187 8.729805 AAATTTATTTGAAGTGCCAAACTCAA 57.270 26.923 0.00 0.00 38.56 3.02
3058 3188 7.951530 ATTTATTTGAAGTGCCAAACTCAAG 57.048 32.000 0.00 0.00 38.56 3.02
3059 3189 2.869233 TTGAAGTGCCAAACTCAAGC 57.131 45.000 0.00 0.00 38.56 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.331805 CTATGGCGACGTCCTCCG 59.668 66.667 10.58 0.00 44.03 4.63
7 8 2.027751 GCTATGGCGACGTCCTCC 59.972 66.667 10.58 12.04 0.00 4.30
8 9 2.027751 GGCTATGGCGACGTCCTC 59.972 66.667 10.58 2.78 39.81 3.71
9 10 2.442272 AGGCTATGGCGACGTCCT 60.442 61.111 10.58 0.00 39.81 3.85
10 11 2.279517 CAGGCTATGGCGACGTCC 60.280 66.667 10.58 2.55 39.81 4.79
11 12 2.279517 CCAGGCTATGGCGACGTC 60.280 66.667 5.18 5.18 43.83 4.34
24 25 3.358076 GAGAACGCCGTCTCCCAGG 62.358 68.421 0.00 0.00 38.51 4.45
25 26 2.182030 GAGAACGCCGTCTCCCAG 59.818 66.667 0.00 0.00 38.51 4.45
29 30 2.182030 CCAGGAGAACGCCGTCTC 59.818 66.667 0.00 0.00 42.90 3.36
30 31 3.382832 CCCAGGAGAACGCCGTCT 61.383 66.667 0.00 0.00 0.00 4.18
34 35 4.785453 CCAGCCCAGGAGAACGCC 62.785 72.222 0.00 0.00 0.00 5.68
36 37 4.785453 GGCCAGCCCAGGAGAACG 62.785 72.222 0.00 0.00 0.00 3.95
58 59 4.719369 AGGTCGACGAGCGTTGGC 62.719 66.667 20.23 8.28 41.80 4.52
59 60 2.504244 GAGGTCGACGAGCGTTGG 60.504 66.667 20.23 0.21 41.80 3.77
60 61 2.081212 GTGAGGTCGACGAGCGTTG 61.081 63.158 20.23 3.92 41.80 4.10
61 62 2.254651 GTGAGGTCGACGAGCGTT 59.745 61.111 20.23 4.94 41.80 4.84
62 63 3.735029 GGTGAGGTCGACGAGCGT 61.735 66.667 20.23 9.68 41.80 5.07
63 64 3.669036 CTGGTGAGGTCGACGAGCG 62.669 68.421 20.23 2.40 42.69 5.03
64 65 2.179517 CTGGTGAGGTCGACGAGC 59.820 66.667 18.97 18.97 0.00 5.03
65 66 2.179517 GCTGGTGAGGTCGACGAG 59.820 66.667 9.92 0.00 0.00 4.18
66 67 3.371063 GGCTGGTGAGGTCGACGA 61.371 66.667 9.92 0.00 0.00 4.20
67 68 4.436998 GGGCTGGTGAGGTCGACG 62.437 72.222 9.92 0.00 0.00 5.12
68 69 4.083862 GGGGCTGGTGAGGTCGAC 62.084 72.222 7.13 7.13 0.00 4.20
71 72 4.083862 GTCGGGGCTGGTGAGGTC 62.084 72.222 0.00 0.00 0.00 3.85
80 81 4.148825 GTCATCAGCGTCGGGGCT 62.149 66.667 0.00 0.00 46.13 5.19
82 83 3.138930 ATCGTCATCAGCGTCGGGG 62.139 63.158 0.00 0.00 0.00 5.73
83 84 1.946156 CATCGTCATCAGCGTCGGG 60.946 63.158 0.00 0.00 0.00 5.14
84 85 2.580470 GCATCGTCATCAGCGTCGG 61.580 63.158 0.00 0.00 0.00 4.79
85 86 2.580470 GGCATCGTCATCAGCGTCG 61.580 63.158 0.00 0.00 0.00 5.12
86 87 0.030773 TAGGCATCGTCATCAGCGTC 59.969 55.000 0.00 0.00 0.00 5.19
87 88 0.031314 CTAGGCATCGTCATCAGCGT 59.969 55.000 0.00 0.00 0.00 5.07
88 89 0.665670 CCTAGGCATCGTCATCAGCG 60.666 60.000 0.00 0.00 0.00 5.18
89 90 0.320247 CCCTAGGCATCGTCATCAGC 60.320 60.000 2.05 0.00 0.00 4.26
90 91 3.902515 CCCTAGGCATCGTCATCAG 57.097 57.895 2.05 0.00 0.00 2.90
102 103 1.115930 AGGATACGTGCTGCCCTAGG 61.116 60.000 0.06 0.06 46.39 3.02
103 104 0.315568 GAGGATACGTGCTGCCCTAG 59.684 60.000 0.00 0.00 46.39 3.02
104 105 1.113517 GGAGGATACGTGCTGCCCTA 61.114 60.000 0.00 0.00 46.39 3.53
105 106 2.435693 GGAGGATACGTGCTGCCCT 61.436 63.158 0.00 0.00 46.39 5.19
106 107 2.109181 GGAGGATACGTGCTGCCC 59.891 66.667 0.00 0.00 46.39 5.36
107 108 1.068250 GAGGAGGATACGTGCTGCC 59.932 63.158 0.00 0.00 46.39 4.85
108 109 1.299468 CGAGGAGGATACGTGCTGC 60.299 63.158 0.00 0.00 46.39 5.25
109 110 0.456221 AACGAGGAGGATACGTGCTG 59.544 55.000 0.00 0.00 46.39 4.41
110 111 1.183549 AAACGAGGAGGATACGTGCT 58.816 50.000 0.00 0.00 46.39 4.40
111 112 2.005971 AAAACGAGGAGGATACGTGC 57.994 50.000 0.00 0.00 46.39 5.34
112 113 4.741342 ACTAAAAACGAGGAGGATACGTG 58.259 43.478 0.00 0.00 46.39 4.49
113 114 5.397142 AACTAAAAACGAGGAGGATACGT 57.603 39.130 0.00 0.00 46.39 3.57
114 115 6.716898 AAAACTAAAAACGAGGAGGATACG 57.283 37.500 0.00 0.00 46.39 3.06
143 144 9.944663 CCGCATTACATTAGTTATTAAACACAT 57.055 29.630 0.00 0.00 38.12 3.21
144 145 9.163899 TCCGCATTACATTAGTTATTAAACACA 57.836 29.630 0.00 0.00 38.12 3.72
145 146 9.429600 GTCCGCATTACATTAGTTATTAAACAC 57.570 33.333 0.00 0.00 38.12 3.32
146 147 9.386010 AGTCCGCATTACATTAGTTATTAAACA 57.614 29.630 0.00 0.00 38.12 2.83
147 148 9.859692 GAGTCCGCATTACATTAGTTATTAAAC 57.140 33.333 0.00 0.00 35.72 2.01
148 149 9.826574 AGAGTCCGCATTACATTAGTTATTAAA 57.173 29.630 0.00 0.00 0.00 1.52
149 150 9.826574 AAGAGTCCGCATTACATTAGTTATTAA 57.173 29.630 0.00 0.00 0.00 1.40
150 151 9.256477 CAAGAGTCCGCATTACATTAGTTATTA 57.744 33.333 0.00 0.00 0.00 0.98
151 152 7.226720 CCAAGAGTCCGCATTACATTAGTTATT 59.773 37.037 0.00 0.00 0.00 1.40
152 153 6.706270 CCAAGAGTCCGCATTACATTAGTTAT 59.294 38.462 0.00 0.00 0.00 1.89
153 154 6.046593 CCAAGAGTCCGCATTACATTAGTTA 58.953 40.000 0.00 0.00 0.00 2.24
154 155 4.876107 CCAAGAGTCCGCATTACATTAGTT 59.124 41.667 0.00 0.00 0.00 2.24
155 156 4.161565 TCCAAGAGTCCGCATTACATTAGT 59.838 41.667 0.00 0.00 0.00 2.24
156 157 4.508124 GTCCAAGAGTCCGCATTACATTAG 59.492 45.833 0.00 0.00 0.00 1.73
157 158 4.439057 GTCCAAGAGTCCGCATTACATTA 58.561 43.478 0.00 0.00 0.00 1.90
158 159 3.270877 GTCCAAGAGTCCGCATTACATT 58.729 45.455 0.00 0.00 0.00 2.71
159 160 2.420129 GGTCCAAGAGTCCGCATTACAT 60.420 50.000 0.00 0.00 0.00 2.29
160 161 1.066430 GGTCCAAGAGTCCGCATTACA 60.066 52.381 0.00 0.00 0.00 2.41
161 162 1.653151 GGTCCAAGAGTCCGCATTAC 58.347 55.000 0.00 0.00 0.00 1.89
162 163 0.539986 GGGTCCAAGAGTCCGCATTA 59.460 55.000 0.00 0.00 0.00 1.90
163 164 1.201429 AGGGTCCAAGAGTCCGCATT 61.201 55.000 0.00 0.00 0.00 3.56
164 165 0.325296 TAGGGTCCAAGAGTCCGCAT 60.325 55.000 0.00 0.00 0.00 4.73
165 166 0.970937 CTAGGGTCCAAGAGTCCGCA 60.971 60.000 0.00 0.00 0.00 5.69
166 167 1.817209 CTAGGGTCCAAGAGTCCGC 59.183 63.158 0.00 0.00 0.00 5.54
167 168 1.677637 GGCTAGGGTCCAAGAGTCCG 61.678 65.000 0.00 0.00 0.00 4.79
168 169 1.677637 CGGCTAGGGTCCAAGAGTCC 61.678 65.000 0.00 0.00 0.00 3.85
169 170 1.677637 CCGGCTAGGGTCCAAGAGTC 61.678 65.000 0.00 0.00 35.97 3.36
170 171 1.686110 CCGGCTAGGGTCCAAGAGT 60.686 63.158 0.00 0.00 35.97 3.24
171 172 3.095347 GCCGGCTAGGGTCCAAGAG 62.095 68.421 22.15 0.00 41.48 2.85
172 173 3.081409 GCCGGCTAGGGTCCAAGA 61.081 66.667 22.15 0.00 41.48 3.02
173 174 4.176752 GGCCGGCTAGGGTCCAAG 62.177 72.222 28.56 0.00 41.48 3.61
179 180 2.871795 AATTTTGGGGCCGGCTAGGG 62.872 60.000 28.56 0.00 41.48 3.53
180 181 0.106419 TAATTTTGGGGCCGGCTAGG 60.106 55.000 28.56 0.00 44.97 3.02
181 182 1.407618 GTTAATTTTGGGGCCGGCTAG 59.592 52.381 28.56 0.00 0.00 3.42
182 183 1.272536 TGTTAATTTTGGGGCCGGCTA 60.273 47.619 28.56 10.66 0.00 3.93
183 184 0.543174 TGTTAATTTTGGGGCCGGCT 60.543 50.000 28.56 6.02 0.00 5.52
184 185 0.539518 ATGTTAATTTTGGGGCCGGC 59.460 50.000 21.18 21.18 0.00 6.13
185 186 3.342377 AAATGTTAATTTTGGGGCCGG 57.658 42.857 0.00 0.00 31.76 6.13
186 187 6.803154 TTAAAAATGTTAATTTTGGGGCCG 57.197 33.333 0.00 0.00 43.63 6.13
187 188 9.632807 GAAATTAAAAATGTTAATTTTGGGGCC 57.367 29.630 13.36 0.00 43.63 5.80
239 240 0.697010 CATTTTTGAGTTCGCGCACG 59.303 50.000 8.75 0.00 42.01 5.34
240 241 1.052287 CCATTTTTGAGTTCGCGCAC 58.948 50.000 8.75 0.00 0.00 5.34
241 242 0.039617 CCCATTTTTGAGTTCGCGCA 60.040 50.000 8.75 0.00 0.00 6.09
242 243 0.039527 ACCCATTTTTGAGTTCGCGC 60.040 50.000 0.00 0.00 0.00 6.86
243 244 1.265635 TGACCCATTTTTGAGTTCGCG 59.734 47.619 0.00 0.00 0.00 5.87
244 245 2.351738 CCTGACCCATTTTTGAGTTCGC 60.352 50.000 0.00 0.00 0.00 4.70
245 246 2.351738 GCCTGACCCATTTTTGAGTTCG 60.352 50.000 0.00 0.00 0.00 3.95
246 247 2.029020 GGCCTGACCCATTTTTGAGTTC 60.029 50.000 0.00 0.00 0.00 3.01
247 248 1.970640 GGCCTGACCCATTTTTGAGTT 59.029 47.619 0.00 0.00 0.00 3.01
248 249 1.133199 TGGCCTGACCCATTTTTGAGT 60.133 47.619 3.32 0.00 37.83 3.41
249 250 1.547372 CTGGCCTGACCCATTTTTGAG 59.453 52.381 3.32 0.00 37.83 3.02
250 251 1.631405 CTGGCCTGACCCATTTTTGA 58.369 50.000 3.32 0.00 37.83 2.69
251 252 0.037046 GCTGGCCTGACCCATTTTTG 60.037 55.000 14.77 0.00 37.83 2.44
252 253 1.535204 CGCTGGCCTGACCCATTTTT 61.535 55.000 14.77 0.00 37.83 1.94
253 254 1.978617 CGCTGGCCTGACCCATTTT 60.979 57.895 14.77 0.00 37.83 1.82
254 255 2.361610 CGCTGGCCTGACCCATTT 60.362 61.111 14.77 0.00 37.83 2.32
255 256 3.210012 AACGCTGGCCTGACCCATT 62.210 57.895 14.77 0.00 37.83 3.16
256 257 3.650950 AACGCTGGCCTGACCCAT 61.651 61.111 14.77 0.00 37.83 4.00
257 258 4.641645 CAACGCTGGCCTGACCCA 62.642 66.667 14.77 0.00 37.83 4.51
260 261 4.643387 ACCCAACGCTGGCCTGAC 62.643 66.667 14.77 3.95 41.99 3.51
261 262 4.641645 CACCCAACGCTGGCCTGA 62.642 66.667 14.77 0.00 41.99 3.86
265 266 3.910490 TTTGCACCCAACGCTGGC 61.910 61.111 0.00 0.00 41.99 4.85
266 267 2.027460 GTTTGCACCCAACGCTGG 59.973 61.111 0.00 0.00 43.10 4.85
267 268 2.353376 CGTTTGCACCCAACGCTG 60.353 61.111 9.02 0.00 0.00 5.18
268 269 2.826738 ACGTTTGCACCCAACGCT 60.827 55.556 19.21 6.71 32.53 5.07
269 270 2.353030 GACGTTTGCACCCAACGC 60.353 61.111 19.21 10.29 32.53 4.84
270 271 1.837538 ATCGACGTTTGCACCCAACG 61.838 55.000 18.03 18.03 34.20 4.10
271 272 0.110373 GATCGACGTTTGCACCCAAC 60.110 55.000 0.00 0.00 0.00 3.77
272 273 1.231958 GGATCGACGTTTGCACCCAA 61.232 55.000 0.00 0.00 0.00 4.12
273 274 1.669760 GGATCGACGTTTGCACCCA 60.670 57.895 0.00 0.00 0.00 4.51
274 275 1.231958 TTGGATCGACGTTTGCACCC 61.232 55.000 0.00 0.00 0.00 4.61
275 276 0.589223 TTTGGATCGACGTTTGCACC 59.411 50.000 0.00 0.00 0.00 5.01
276 277 1.003331 TGTTTGGATCGACGTTTGCAC 60.003 47.619 0.00 0.00 0.00 4.57
277 278 1.003331 GTGTTTGGATCGACGTTTGCA 60.003 47.619 0.00 0.00 0.00 4.08
278 279 1.670326 GTGTTTGGATCGACGTTTGC 58.330 50.000 0.00 0.00 0.00 3.68
279 280 1.523515 TCGTGTTTGGATCGACGTTTG 59.476 47.619 0.00 0.00 33.56 2.93
280 281 1.855513 TCGTGTTTGGATCGACGTTT 58.144 45.000 0.00 0.00 33.56 3.60
281 282 1.855513 TTCGTGTTTGGATCGACGTT 58.144 45.000 0.00 0.00 33.38 3.99
282 283 1.790623 CTTTCGTGTTTGGATCGACGT 59.209 47.619 0.00 0.00 33.38 4.34
283 284 1.461888 GCTTTCGTGTTTGGATCGACG 60.462 52.381 0.00 0.00 33.38 5.12
284 285 1.461888 CGCTTTCGTGTTTGGATCGAC 60.462 52.381 0.00 0.00 33.38 4.20
285 286 0.787787 CGCTTTCGTGTTTGGATCGA 59.212 50.000 0.00 0.00 0.00 3.59
286 287 0.179225 CCGCTTTCGTGTTTGGATCG 60.179 55.000 0.00 0.00 0.00 3.69
287 288 0.168128 CCCGCTTTCGTGTTTGGATC 59.832 55.000 0.00 0.00 0.00 3.36
288 289 0.250553 TCCCGCTTTCGTGTTTGGAT 60.251 50.000 0.00 0.00 0.00 3.41
289 290 0.250553 ATCCCGCTTTCGTGTTTGGA 60.251 50.000 0.00 0.00 0.00 3.53
290 291 1.444836 TATCCCGCTTTCGTGTTTGG 58.555 50.000 0.00 0.00 0.00 3.28
291 292 4.331717 ACTTATATCCCGCTTTCGTGTTTG 59.668 41.667 0.00 0.00 0.00 2.93
292 293 4.331717 CACTTATATCCCGCTTTCGTGTTT 59.668 41.667 0.00 0.00 0.00 2.83
293 294 3.869246 CACTTATATCCCGCTTTCGTGTT 59.131 43.478 0.00 0.00 0.00 3.32
294 295 3.118884 ACACTTATATCCCGCTTTCGTGT 60.119 43.478 0.00 0.00 0.00 4.49
295 296 3.245284 CACACTTATATCCCGCTTTCGTG 59.755 47.826 0.00 0.00 0.00 4.35
296 297 3.454375 CACACTTATATCCCGCTTTCGT 58.546 45.455 0.00 0.00 0.00 3.85
297 298 2.221055 GCACACTTATATCCCGCTTTCG 59.779 50.000 0.00 0.00 0.00 3.46
298 299 3.248602 CAGCACACTTATATCCCGCTTTC 59.751 47.826 0.00 0.00 0.00 2.62
299 300 3.206150 CAGCACACTTATATCCCGCTTT 58.794 45.455 0.00 0.00 0.00 3.51
300 301 2.485479 CCAGCACACTTATATCCCGCTT 60.485 50.000 0.00 0.00 0.00 4.68
301 302 1.070758 CCAGCACACTTATATCCCGCT 59.929 52.381 0.00 0.00 0.00 5.52
302 303 1.512926 CCAGCACACTTATATCCCGC 58.487 55.000 0.00 0.00 0.00 6.13
303 304 1.878102 GCCCAGCACACTTATATCCCG 60.878 57.143 0.00 0.00 0.00 5.14
304 305 1.545651 GGCCCAGCACACTTATATCCC 60.546 57.143 0.00 0.00 0.00 3.85
305 306 1.142870 TGGCCCAGCACACTTATATCC 59.857 52.381 0.00 0.00 0.00 2.59
306 307 2.638480 TGGCCCAGCACACTTATATC 57.362 50.000 0.00 0.00 0.00 1.63
307 308 3.600448 ATTGGCCCAGCACACTTATAT 57.400 42.857 0.00 0.00 0.00 0.86
308 309 3.287222 GAATTGGCCCAGCACACTTATA 58.713 45.455 0.00 0.00 0.00 0.98
309 310 2.102578 GAATTGGCCCAGCACACTTAT 58.897 47.619 0.00 0.00 0.00 1.73
310 311 1.202989 TGAATTGGCCCAGCACACTTA 60.203 47.619 0.00 0.00 0.00 2.24
311 312 0.469705 TGAATTGGCCCAGCACACTT 60.470 50.000 0.00 0.00 0.00 3.16
312 313 0.469705 TTGAATTGGCCCAGCACACT 60.470 50.000 0.00 0.00 0.00 3.55
313 314 0.392336 TTTGAATTGGCCCAGCACAC 59.608 50.000 0.00 0.00 0.00 3.82
314 315 0.392336 GTTTGAATTGGCCCAGCACA 59.608 50.000 0.00 0.00 0.00 4.57
315 316 0.667184 CGTTTGAATTGGCCCAGCAC 60.667 55.000 0.00 0.00 0.00 4.40
316 317 1.664873 CGTTTGAATTGGCCCAGCA 59.335 52.632 0.00 0.00 0.00 4.41
317 318 1.079888 CCGTTTGAATTGGCCCAGC 60.080 57.895 0.00 0.00 0.00 4.85
318 319 0.243636 GTCCGTTTGAATTGGCCCAG 59.756 55.000 0.00 0.00 0.00 4.45
319 320 0.468214 TGTCCGTTTGAATTGGCCCA 60.468 50.000 0.00 0.00 0.00 5.36
320 321 0.676736 TTGTCCGTTTGAATTGGCCC 59.323 50.000 0.00 0.00 0.00 5.80
321 322 2.517650 TTTGTCCGTTTGAATTGGCC 57.482 45.000 0.00 0.00 0.00 5.36
322 323 3.121113 CGATTTTGTCCGTTTGAATTGGC 59.879 43.478 0.00 0.00 0.00 4.52
323 324 3.672867 CCGATTTTGTCCGTTTGAATTGG 59.327 43.478 0.00 0.00 0.00 3.16
324 325 3.121113 GCCGATTTTGTCCGTTTGAATTG 59.879 43.478 0.00 0.00 0.00 2.32
325 326 3.313690 GCCGATTTTGTCCGTTTGAATT 58.686 40.909 0.00 0.00 0.00 2.17
326 327 2.667171 CGCCGATTTTGTCCGTTTGAAT 60.667 45.455 0.00 0.00 0.00 2.57
327 328 1.334239 CGCCGATTTTGTCCGTTTGAA 60.334 47.619 0.00 0.00 0.00 2.69
328 329 0.236187 CGCCGATTTTGTCCGTTTGA 59.764 50.000 0.00 0.00 0.00 2.69
329 330 0.040781 ACGCCGATTTTGTCCGTTTG 60.041 50.000 0.00 0.00 0.00 2.93
330 331 0.236449 GACGCCGATTTTGTCCGTTT 59.764 50.000 0.00 0.00 31.65 3.60
331 332 1.571215 GGACGCCGATTTTGTCCGTT 61.571 55.000 0.00 0.00 42.42 4.44
332 333 2.030958 GGACGCCGATTTTGTCCGT 61.031 57.895 0.00 0.00 42.42 4.69
333 334 2.782615 GGACGCCGATTTTGTCCG 59.217 61.111 0.00 0.00 42.42 4.79
335 336 0.454452 GCTTGGACGCCGATTTTGTC 60.454 55.000 0.00 0.00 0.00 3.18
336 337 1.579429 GCTTGGACGCCGATTTTGT 59.421 52.632 0.00 0.00 0.00 2.83
337 338 1.154035 GGCTTGGACGCCGATTTTG 60.154 57.895 0.00 0.00 40.79 2.44
338 339 3.274067 GGCTTGGACGCCGATTTT 58.726 55.556 0.00 0.00 40.79 1.82
350 351 1.856265 GAGCAACTCCAACCGGCTTG 61.856 60.000 0.00 5.52 34.44 4.01
351 352 1.600916 GAGCAACTCCAACCGGCTT 60.601 57.895 0.00 0.00 34.44 4.35
352 353 2.032681 GAGCAACTCCAACCGGCT 59.967 61.111 0.00 0.00 37.56 5.52
353 354 1.600916 AAGAGCAACTCCAACCGGC 60.601 57.895 0.00 0.00 0.00 6.13
354 355 1.856265 GCAAGAGCAACTCCAACCGG 61.856 60.000 0.00 0.00 41.58 5.28
355 356 0.886490 AGCAAGAGCAACTCCAACCG 60.886 55.000 0.00 0.00 45.49 4.44
356 357 1.000938 CAAGCAAGAGCAACTCCAACC 60.001 52.381 0.00 0.00 45.49 3.77
357 358 1.601412 GCAAGCAAGAGCAACTCCAAC 60.601 52.381 0.00 0.00 45.49 3.77
358 359 0.670162 GCAAGCAAGAGCAACTCCAA 59.330 50.000 0.00 0.00 45.49 3.53
359 360 0.179009 AGCAAGCAAGAGCAACTCCA 60.179 50.000 0.00 0.00 45.49 3.86
360 361 0.520847 GAGCAAGCAAGAGCAACTCC 59.479 55.000 0.00 0.00 45.49 3.85
361 362 1.464219 GAGAGCAAGCAAGAGCAACTC 59.536 52.381 0.00 0.00 45.49 3.01
362 363 1.521580 GAGAGCAAGCAAGAGCAACT 58.478 50.000 0.00 0.00 45.49 3.16
363 364 0.520847 GGAGAGCAAGCAAGAGCAAC 59.479 55.000 0.00 0.00 45.49 4.17
364 365 0.607489 GGGAGAGCAAGCAAGAGCAA 60.607 55.000 0.00 0.00 45.49 3.91
365 366 1.002868 GGGAGAGCAAGCAAGAGCA 60.003 57.895 0.00 0.00 45.49 4.26
366 367 2.105466 CGGGAGAGCAAGCAAGAGC 61.105 63.158 0.00 0.00 42.56 4.09
367 368 1.449246 CCGGGAGAGCAAGCAAGAG 60.449 63.158 0.00 0.00 0.00 2.85
368 369 2.665000 CCGGGAGAGCAAGCAAGA 59.335 61.111 0.00 0.00 0.00 3.02
369 370 2.437359 CCCGGGAGAGCAAGCAAG 60.437 66.667 18.48 0.00 0.00 4.01
372 373 4.168291 CCTCCCGGGAGAGCAAGC 62.168 72.222 45.77 0.00 44.53 4.01
417 423 5.200483 GGAATAACCATCCAATCCAAGTCA 58.800 41.667 0.00 0.00 36.92 3.41
418 424 4.584743 GGGAATAACCATCCAATCCAAGTC 59.415 45.833 0.00 0.00 41.20 3.01
419 425 4.546674 GGGAATAACCATCCAATCCAAGT 58.453 43.478 0.00 0.00 41.20 3.16
420 426 3.569701 CGGGAATAACCATCCAATCCAAG 59.430 47.826 0.00 0.00 41.20 3.61
421 427 3.561143 CGGGAATAACCATCCAATCCAA 58.439 45.455 0.00 0.00 41.20 3.53
422 428 2.751479 GCGGGAATAACCATCCAATCCA 60.751 50.000 0.00 0.00 41.20 3.41
423 429 1.886542 GCGGGAATAACCATCCAATCC 59.113 52.381 0.00 0.00 41.20 3.01
424 430 1.535462 CGCGGGAATAACCATCCAATC 59.465 52.381 0.00 0.00 41.20 2.67
425 431 1.604604 CGCGGGAATAACCATCCAAT 58.395 50.000 0.00 0.00 41.20 3.16
621 629 1.082821 CGTGGTCGTCGTTGTCGTA 60.083 57.895 0.00 0.00 38.33 3.43
622 630 2.352686 CGTGGTCGTCGTTGTCGT 60.353 61.111 0.00 0.00 38.33 4.34
722 740 1.301716 CATGCCTTATCCGGGTCCG 60.302 63.158 0.00 1.86 39.44 4.79
744 765 4.980805 GTTCGCCAGTGCCACCGA 62.981 66.667 0.00 0.00 0.00 4.69
859 880 3.077556 GCTTCTGAGGAGGGCGGA 61.078 66.667 0.00 0.00 0.00 5.54
959 980 2.140792 ACAGTCCGACAAGCCCAGT 61.141 57.895 0.40 0.00 0.00 4.00
967 988 2.954611 CTCGCTCACAGTCCGACA 59.045 61.111 0.40 0.00 0.00 4.35
1347 1372 2.049802 GCTCCCGACGACACGAAA 60.050 61.111 0.00 0.00 35.09 3.46
1464 1501 1.342082 AATCCGCGAAGAACACGTCG 61.342 55.000 8.23 0.00 38.22 5.12
1664 1706 3.630013 AGAACGCTGGCAGCTCCA 61.630 61.111 34.17 5.03 44.18 3.86
1693 1735 0.798776 CCGTCACCAAGCAAGATGTC 59.201 55.000 0.00 0.00 0.00 3.06
1813 1888 0.973632 TCTTGCGCTTCTCCCTGTAA 59.026 50.000 9.73 0.00 0.00 2.41
2148 2223 7.148490 CCCGCGTAATCATGAATATACAATTGA 60.148 37.037 13.59 0.00 0.00 2.57
2149 2224 6.960992 CCCGCGTAATCATGAATATACAATTG 59.039 38.462 4.92 3.24 0.00 2.32
2150 2225 6.876789 TCCCGCGTAATCATGAATATACAATT 59.123 34.615 4.92 0.00 0.00 2.32
2160 2235 4.750460 GCTCCCGCGTAATCATGA 57.250 55.556 4.92 0.00 0.00 3.07
2223 2299 9.407380 TGATATGCTACAGGTGAAAAATTACAT 57.593 29.630 0.00 0.00 0.00 2.29
2229 2305 7.774625 TGATGATGATATGCTACAGGTGAAAAA 59.225 33.333 0.00 0.00 0.00 1.94
2234 2310 6.313164 GTGATGATGATGATATGCTACAGGTG 59.687 42.308 0.00 0.00 0.00 4.00
2314 2415 1.493950 GCAGCAGTAATGCGAGCGAT 61.494 55.000 17.13 0.00 40.27 4.58
2315 2416 2.167219 GCAGCAGTAATGCGAGCGA 61.167 57.895 17.13 0.00 40.27 4.93
2316 2417 2.322422 GCAGCAGTAATGCGAGCG 59.678 61.111 17.13 6.29 40.27 5.03
2321 2422 1.066152 GCCCTAAAGCAGCAGTAATGC 59.934 52.381 7.15 7.15 44.18 3.56
2322 2423 2.368439 TGCCCTAAAGCAGCAGTAATG 58.632 47.619 0.00 0.00 38.00 1.90
2323 2424 2.806945 TGCCCTAAAGCAGCAGTAAT 57.193 45.000 0.00 0.00 38.00 1.89
2331 2432 3.222173 TGAAAGTTCTGCCCTAAAGCA 57.778 42.857 0.00 0.00 41.46 3.91
2332 2433 3.674410 GCATGAAAGTTCTGCCCTAAAGC 60.674 47.826 0.00 0.00 0.00 3.51
2333 2434 3.119352 GGCATGAAAGTTCTGCCCTAAAG 60.119 47.826 17.05 0.00 41.48 1.85
2334 2435 2.825532 GGCATGAAAGTTCTGCCCTAAA 59.174 45.455 17.05 0.00 41.48 1.85
2335 2436 2.224992 TGGCATGAAAGTTCTGCCCTAA 60.225 45.455 21.48 9.03 44.06 2.69
2336 2437 1.354031 TGGCATGAAAGTTCTGCCCTA 59.646 47.619 21.48 9.50 44.06 3.53
2337 2438 0.112995 TGGCATGAAAGTTCTGCCCT 59.887 50.000 21.48 0.00 44.06 5.19
2338 2439 1.188863 ATGGCATGAAAGTTCTGCCC 58.811 50.000 21.48 8.71 44.06 5.36
2339 2440 3.323751 AAATGGCATGAAAGTTCTGCC 57.676 42.857 19.32 19.32 44.50 4.85
2340 2441 3.120442 GCAAAATGGCATGAAAGTTCTGC 60.120 43.478 0.00 1.20 33.52 4.26
2341 2442 4.312443 AGCAAAATGGCATGAAAGTTCTG 58.688 39.130 0.00 0.00 35.83 3.02
2342 2443 4.612264 AGCAAAATGGCATGAAAGTTCT 57.388 36.364 0.00 0.00 35.83 3.01
2343 2444 6.035327 GTGATAGCAAAATGGCATGAAAGTTC 59.965 38.462 0.00 0.00 35.83 3.01
2352 2453 2.169330 TGCAGTGATAGCAAAATGGCA 58.831 42.857 0.00 0.00 39.39 4.92
2435 2544 5.751990 ACCGCGTATATTAAAGAAAGACCAG 59.248 40.000 4.92 0.00 0.00 4.00
2453 2562 1.866880 GCGAAAGATATACCACCGCGT 60.867 52.381 4.92 0.00 0.00 6.01
2463 2572 1.523758 GGCGGAATGGCGAAAGATAT 58.476 50.000 0.00 0.00 0.00 1.63
2488 2597 4.889995 TCCATTCGAGATCTCAGAGCTTAA 59.110 41.667 22.31 6.07 0.00 1.85
2489 2598 4.464947 TCCATTCGAGATCTCAGAGCTTA 58.535 43.478 22.31 6.39 0.00 3.09
2511 2620 3.955145 TGTCAGCCATCGGACATTT 57.045 47.368 0.00 0.00 41.34 2.32
2515 2624 0.745845 AAGCATGTCAGCCATCGGAC 60.746 55.000 0.00 0.00 37.81 4.79
2528 2643 0.169672 CACTCGGCAAAGGAAGCATG 59.830 55.000 0.00 0.00 0.00 4.06
2592 2708 2.748058 CTAGCCAGCCAACCAACGGT 62.748 60.000 0.00 0.00 37.65 4.83
2593 2709 2.033448 TAGCCAGCCAACCAACGG 59.967 61.111 0.00 0.00 0.00 4.44
2594 2710 2.690778 GCTAGCCAGCCAACCAACG 61.691 63.158 2.29 0.00 42.37 4.10
2595 2711 3.278157 GCTAGCCAGCCAACCAAC 58.722 61.111 2.29 0.00 42.37 3.77
2637 2765 5.562298 TCCCAAAGCATTATAGGAGGTAC 57.438 43.478 0.00 0.00 0.00 3.34
2638 2766 5.163131 GGTTCCCAAAGCATTATAGGAGGTA 60.163 44.000 0.00 0.00 33.03 3.08
2639 2767 4.386424 GGTTCCCAAAGCATTATAGGAGGT 60.386 45.833 0.00 0.00 33.03 3.85
2640 2768 4.145052 GGTTCCCAAAGCATTATAGGAGG 58.855 47.826 0.00 0.00 33.03 4.30
2641 2769 4.792068 TGGTTCCCAAAGCATTATAGGAG 58.208 43.478 0.00 0.00 37.94 3.69
2642 2770 4.871871 TGGTTCCCAAAGCATTATAGGA 57.128 40.909 0.00 0.00 37.94 2.94
2690 2818 1.063867 TGACCGGTGGAAAGGGAAAAA 60.064 47.619 14.63 0.00 0.00 1.94
2707 2835 3.130340 ACAATTGTTGTCCTGTGGTTGAC 59.870 43.478 4.92 0.00 40.56 3.18
2721 2849 3.304659 GCAACTCGGATGTGACAATTGTT 60.305 43.478 13.36 0.00 0.00 2.83
2828 2958 2.797792 CGAAGTCTGGCTGTAGATGCTC 60.798 54.545 0.00 0.00 0.00 4.26
2829 2959 1.135915 CGAAGTCTGGCTGTAGATGCT 59.864 52.381 0.00 0.00 0.00 3.79
2830 2960 1.565305 CGAAGTCTGGCTGTAGATGC 58.435 55.000 0.00 0.00 0.00 3.91
2831 2961 1.134995 TGCGAAGTCTGGCTGTAGATG 60.135 52.381 0.00 0.00 0.00 2.90
2832 2962 1.186200 TGCGAAGTCTGGCTGTAGAT 58.814 50.000 0.00 0.00 0.00 1.98
2833 2963 0.966179 TTGCGAAGTCTGGCTGTAGA 59.034 50.000 0.00 0.00 0.00 2.59
2834 2964 1.795768 TTTGCGAAGTCTGGCTGTAG 58.204 50.000 0.00 0.00 0.00 2.74
2835 2965 2.472695 ATTTGCGAAGTCTGGCTGTA 57.527 45.000 0.00 0.00 0.00 2.74
2836 2966 1.537202 GAATTTGCGAAGTCTGGCTGT 59.463 47.619 6.89 0.00 0.00 4.40
2837 2967 1.464687 CGAATTTGCGAAGTCTGGCTG 60.465 52.381 12.06 0.00 0.00 4.85
2838 2968 0.798776 CGAATTTGCGAAGTCTGGCT 59.201 50.000 12.06 0.00 0.00 4.75
2839 2969 0.179189 CCGAATTTGCGAAGTCTGGC 60.179 55.000 12.06 0.00 0.00 4.85
2840 2970 0.179189 GCCGAATTTGCGAAGTCTGG 60.179 55.000 12.06 14.31 31.49 3.86
2841 2971 0.179189 GGCCGAATTTGCGAAGTCTG 60.179 55.000 12.06 6.86 0.00 3.51
2842 2972 1.305930 GGGCCGAATTTGCGAAGTCT 61.306 55.000 12.06 0.00 0.00 3.24
2843 2973 1.136774 GGGCCGAATTTGCGAAGTC 59.863 57.895 3.98 3.98 0.00 3.01
2844 2974 2.686816 CGGGCCGAATTTGCGAAGT 61.687 57.895 24.41 0.00 0.00 3.01
2845 2975 2.100216 CGGGCCGAATTTGCGAAG 59.900 61.111 24.41 0.00 0.00 3.79
2846 2976 2.670251 ACGGGCCGAATTTGCGAA 60.670 55.556 35.78 0.00 0.00 4.70
2847 2977 3.122323 GACGGGCCGAATTTGCGA 61.122 61.111 35.78 0.00 0.00 5.10
2848 2978 2.465097 TTTGACGGGCCGAATTTGCG 62.465 55.000 35.78 2.92 0.00 4.85
2849 2979 0.319125 TTTTGACGGGCCGAATTTGC 60.319 50.000 35.78 14.08 0.00 3.68
2850 2980 1.696988 CTTTTGACGGGCCGAATTTG 58.303 50.000 35.78 13.67 0.00 2.32
2851 2981 0.038618 GCTTTTGACGGGCCGAATTT 60.039 50.000 35.78 10.44 0.00 1.82
2852 2982 1.584495 GCTTTTGACGGGCCGAATT 59.416 52.632 35.78 10.92 0.00 2.17
2853 2983 2.340328 GGCTTTTGACGGGCCGAAT 61.340 57.895 35.78 11.88 36.37 3.34
2854 2984 2.981350 GGCTTTTGACGGGCCGAA 60.981 61.111 35.78 17.97 36.37 4.30
2879 3009 4.650377 GAGGGGCCATCCGGATGC 62.650 72.222 34.77 28.14 37.49 3.91
2880 3010 1.200760 TATGAGGGGCCATCCGGATG 61.201 60.000 33.52 33.52 38.51 3.51
2881 3011 0.253347 ATATGAGGGGCCATCCGGAT 60.253 55.000 16.68 12.38 36.01 4.18
2882 3012 0.475632 AATATGAGGGGCCATCCGGA 60.476 55.000 16.68 6.61 36.01 5.14
2883 3013 0.405585 AAATATGAGGGGCCATCCGG 59.594 55.000 16.68 0.00 36.01 5.14
2884 3014 2.162681 GAAAATATGAGGGGCCATCCG 58.837 52.381 16.68 0.00 36.01 4.18
2885 3015 3.532641 AGAAAATATGAGGGGCCATCC 57.467 47.619 16.68 0.00 0.00 3.51
2886 3016 3.829026 GGAAGAAAATATGAGGGGCCATC 59.171 47.826 12.10 12.10 0.00 3.51
2887 3017 3.751893 CGGAAGAAAATATGAGGGGCCAT 60.752 47.826 4.39 0.00 0.00 4.40
2888 3018 2.422803 CGGAAGAAAATATGAGGGGCCA 60.423 50.000 4.39 0.00 0.00 5.36
2889 3019 2.230660 CGGAAGAAAATATGAGGGGCC 58.769 52.381 0.00 0.00 0.00 5.80
2890 3020 2.618709 CACGGAAGAAAATATGAGGGGC 59.381 50.000 0.00 0.00 0.00 5.80
2891 3021 2.618709 GCACGGAAGAAAATATGAGGGG 59.381 50.000 0.00 0.00 0.00 4.79
2892 3022 3.278574 TGCACGGAAGAAAATATGAGGG 58.721 45.455 0.00 0.00 0.00 4.30
2893 3023 4.023707 GGATGCACGGAAGAAAATATGAGG 60.024 45.833 0.00 0.00 0.00 3.86
2894 3024 4.576053 TGGATGCACGGAAGAAAATATGAG 59.424 41.667 0.00 0.00 0.00 2.90
2895 3025 4.335315 GTGGATGCACGGAAGAAAATATGA 59.665 41.667 0.10 0.00 0.00 2.15
2896 3026 4.096231 TGTGGATGCACGGAAGAAAATATG 59.904 41.667 13.03 0.00 0.00 1.78
2897 3027 4.269183 TGTGGATGCACGGAAGAAAATAT 58.731 39.130 13.03 0.00 0.00 1.28
2898 3028 3.680490 TGTGGATGCACGGAAGAAAATA 58.320 40.909 13.03 0.00 0.00 1.40
2899 3029 2.513753 TGTGGATGCACGGAAGAAAAT 58.486 42.857 13.03 0.00 0.00 1.82
2900 3030 1.974265 TGTGGATGCACGGAAGAAAA 58.026 45.000 13.03 0.00 0.00 2.29
2901 3031 2.198827 ATGTGGATGCACGGAAGAAA 57.801 45.000 13.03 0.00 0.00 2.52
2902 3032 3.134623 AGATATGTGGATGCACGGAAGAA 59.865 43.478 13.03 0.00 0.00 2.52
2903 3033 2.700371 AGATATGTGGATGCACGGAAGA 59.300 45.455 13.03 0.00 0.00 2.87
2904 3034 3.062763 GAGATATGTGGATGCACGGAAG 58.937 50.000 13.03 0.00 0.00 3.46
2905 3035 2.433970 TGAGATATGTGGATGCACGGAA 59.566 45.455 13.03 0.72 0.00 4.30
2906 3036 2.038659 TGAGATATGTGGATGCACGGA 58.961 47.619 13.03 3.11 0.00 4.69
2907 3037 2.531522 TGAGATATGTGGATGCACGG 57.468 50.000 13.03 0.00 0.00 4.94
2908 3038 4.083643 GGATTTGAGATATGTGGATGCACG 60.084 45.833 13.03 0.00 0.00 5.34
2909 3039 4.083643 CGGATTTGAGATATGTGGATGCAC 60.084 45.833 10.90 10.90 0.00 4.57
2910 3040 4.067192 CGGATTTGAGATATGTGGATGCA 58.933 43.478 0.00 0.00 0.00 3.96
2911 3041 3.438087 CCGGATTTGAGATATGTGGATGC 59.562 47.826 0.00 0.00 0.00 3.91
2912 3042 4.692625 GTCCGGATTTGAGATATGTGGATG 59.307 45.833 7.81 0.00 0.00 3.51
2913 3043 4.594920 AGTCCGGATTTGAGATATGTGGAT 59.405 41.667 7.81 0.00 0.00 3.41
2914 3044 3.967326 AGTCCGGATTTGAGATATGTGGA 59.033 43.478 7.81 0.00 0.00 4.02
2915 3045 4.039730 AGAGTCCGGATTTGAGATATGTGG 59.960 45.833 7.81 0.00 0.00 4.17
2916 3046 5.207110 AGAGTCCGGATTTGAGATATGTG 57.793 43.478 7.81 0.00 0.00 3.21
2917 3047 4.895889 TGAGAGTCCGGATTTGAGATATGT 59.104 41.667 7.81 0.00 0.00 2.29
2918 3048 5.459536 TGAGAGTCCGGATTTGAGATATG 57.540 43.478 7.81 0.00 0.00 1.78
2919 3049 6.485830 TTTGAGAGTCCGGATTTGAGATAT 57.514 37.500 7.81 0.00 0.00 1.63
2920 3050 5.932619 TTTGAGAGTCCGGATTTGAGATA 57.067 39.130 7.81 0.00 0.00 1.98
2921 3051 4.826274 TTTGAGAGTCCGGATTTGAGAT 57.174 40.909 7.81 0.00 0.00 2.75
2922 3052 4.383118 GGATTTGAGAGTCCGGATTTGAGA 60.383 45.833 7.81 0.00 0.00 3.27
2923 3053 3.873952 GGATTTGAGAGTCCGGATTTGAG 59.126 47.826 7.81 0.00 0.00 3.02
2924 3054 3.263170 TGGATTTGAGAGTCCGGATTTGA 59.737 43.478 7.81 0.00 37.32 2.69
2925 3055 3.609853 TGGATTTGAGAGTCCGGATTTG 58.390 45.455 7.81 0.00 37.32 2.32
2926 3056 4.202441 CATGGATTTGAGAGTCCGGATTT 58.798 43.478 7.81 0.00 37.32 2.17
2927 3057 3.813443 CATGGATTTGAGAGTCCGGATT 58.187 45.455 7.81 1.79 37.32 3.01
2928 3058 2.486191 GCATGGATTTGAGAGTCCGGAT 60.486 50.000 7.81 0.00 37.32 4.18
2929 3059 1.134401 GCATGGATTTGAGAGTCCGGA 60.134 52.381 0.00 0.00 37.32 5.14
2930 3060 1.303309 GCATGGATTTGAGAGTCCGG 58.697 55.000 0.00 0.00 37.32 5.14
2931 3061 2.028420 TGCATGGATTTGAGAGTCCG 57.972 50.000 0.00 0.00 37.32 4.79
2932 3062 4.996788 ATTTGCATGGATTTGAGAGTCC 57.003 40.909 0.00 0.00 35.02 3.85
2933 3063 6.261118 GTGTATTTGCATGGATTTGAGAGTC 58.739 40.000 0.00 0.00 0.00 3.36
2934 3064 5.163723 CGTGTATTTGCATGGATTTGAGAGT 60.164 40.000 0.00 0.00 0.00 3.24
2935 3065 5.268544 CGTGTATTTGCATGGATTTGAGAG 58.731 41.667 0.00 0.00 0.00 3.20
2936 3066 4.438608 GCGTGTATTTGCATGGATTTGAGA 60.439 41.667 0.00 0.00 0.00 3.27
2937 3067 3.792956 GCGTGTATTTGCATGGATTTGAG 59.207 43.478 0.00 0.00 0.00 3.02
2938 3068 3.192212 TGCGTGTATTTGCATGGATTTGA 59.808 39.130 0.00 0.00 35.90 2.69
2939 3069 3.509740 TGCGTGTATTTGCATGGATTTG 58.490 40.909 0.00 0.00 35.90 2.32
2940 3070 3.865011 TGCGTGTATTTGCATGGATTT 57.135 38.095 0.00 0.00 35.90 2.17
2947 3077 1.433534 TCGACATGCGTGTATTTGCA 58.566 45.000 12.53 0.00 46.51 4.08
2948 3078 2.030335 TGATCGACATGCGTGTATTTGC 59.970 45.455 12.53 0.00 39.09 3.68
2949 3079 3.923827 TGATCGACATGCGTGTATTTG 57.076 42.857 12.53 2.71 39.09 2.32
2960 3090 3.441222 ACATTGTGTTGCATGATCGACAT 59.559 39.130 0.00 0.00 40.17 3.06
2961 3091 2.813172 ACATTGTGTTGCATGATCGACA 59.187 40.909 0.00 0.00 0.00 4.35
2962 3092 3.120234 TGACATTGTGTTGCATGATCGAC 60.120 43.478 0.00 0.00 0.00 4.20
2963 3093 3.072944 TGACATTGTGTTGCATGATCGA 58.927 40.909 0.00 0.00 0.00 3.59
2964 3094 3.165890 GTGACATTGTGTTGCATGATCG 58.834 45.455 0.00 0.00 0.00 3.69
2965 3095 3.916172 GTGTGACATTGTGTTGCATGATC 59.084 43.478 0.00 0.00 0.00 2.92
2966 3096 3.609879 CGTGTGACATTGTGTTGCATGAT 60.610 43.478 0.00 0.00 0.00 2.45
2967 3097 2.286891 CGTGTGACATTGTGTTGCATGA 60.287 45.455 0.00 0.00 0.00 3.07
2968 3098 2.045586 CGTGTGACATTGTGTTGCATG 58.954 47.619 0.00 0.00 0.00 4.06
2969 3099 1.675483 ACGTGTGACATTGTGTTGCAT 59.325 42.857 0.00 0.00 0.00 3.96
2970 3100 1.090728 ACGTGTGACATTGTGTTGCA 58.909 45.000 0.00 0.00 0.00 4.08
2971 3101 3.326733 TTACGTGTGACATTGTGTTGC 57.673 42.857 0.00 0.00 0.00 4.17
2972 3102 5.563751 GCTATTTACGTGTGACATTGTGTTG 59.436 40.000 0.00 0.00 0.00 3.33
2973 3103 5.237561 TGCTATTTACGTGTGACATTGTGTT 59.762 36.000 0.00 0.00 0.00 3.32
2974 3104 4.752604 TGCTATTTACGTGTGACATTGTGT 59.247 37.500 0.00 0.00 0.00 3.72
2975 3105 5.276240 TGCTATTTACGTGTGACATTGTG 57.724 39.130 0.00 0.00 0.00 3.33
2976 3106 5.933187 TTGCTATTTACGTGTGACATTGT 57.067 34.783 0.00 0.00 0.00 2.71
2977 3107 7.795431 AAATTGCTATTTACGTGTGACATTG 57.205 32.000 4.22 0.00 32.25 2.82
2978 3108 8.698854 CAAAAATTGCTATTTACGTGTGACATT 58.301 29.630 6.55 0.00 32.85 2.71
2979 3109 7.328249 CCAAAAATTGCTATTTACGTGTGACAT 59.672 33.333 6.55 0.00 32.85 3.06
2980 3110 6.638873 CCAAAAATTGCTATTTACGTGTGACA 59.361 34.615 6.55 0.00 32.85 3.58
2981 3111 6.639279 ACCAAAAATTGCTATTTACGTGTGAC 59.361 34.615 6.55 0.00 32.85 3.67
2982 3112 6.740110 ACCAAAAATTGCTATTTACGTGTGA 58.260 32.000 6.55 0.00 32.85 3.58
2983 3113 8.682128 ATACCAAAAATTGCTATTTACGTGTG 57.318 30.769 6.55 1.72 32.85 3.82
2984 3114 8.516234 TGATACCAAAAATTGCTATTTACGTGT 58.484 29.630 6.55 5.27 32.85 4.49
2985 3115 8.903570 TGATACCAAAAATTGCTATTTACGTG 57.096 30.769 6.55 5.90 32.85 4.49
2986 3116 9.567848 CTTGATACCAAAAATTGCTATTTACGT 57.432 29.630 6.55 0.00 32.85 3.57
2987 3117 8.531530 GCTTGATACCAAAAATTGCTATTTACG 58.468 33.333 6.55 1.66 32.85 3.18
2988 3118 9.364989 TGCTTGATACCAAAAATTGCTATTTAC 57.635 29.630 6.55 0.00 32.85 2.01
2991 3121 9.754382 CTATGCTTGATACCAAAAATTGCTATT 57.246 29.630 0.00 0.00 0.00 1.73
2992 3122 9.135189 TCTATGCTTGATACCAAAAATTGCTAT 57.865 29.630 0.00 0.00 0.00 2.97
2993 3123 8.518430 TCTATGCTTGATACCAAAAATTGCTA 57.482 30.769 0.00 0.00 0.00 3.49
2994 3124 7.408756 TCTATGCTTGATACCAAAAATTGCT 57.591 32.000 0.00 0.00 0.00 3.91
2995 3125 9.403110 CTATCTATGCTTGATACCAAAAATTGC 57.597 33.333 0.00 0.00 0.00 3.56
2998 3128 9.632638 ACACTATCTATGCTTGATACCAAAAAT 57.367 29.630 0.00 0.00 0.00 1.82
2999 3129 9.461312 AACACTATCTATGCTTGATACCAAAAA 57.539 29.630 0.00 0.00 0.00 1.94
3000 3130 9.461312 AAACACTATCTATGCTTGATACCAAAA 57.539 29.630 0.00 0.00 0.00 2.44
3002 3132 9.542462 GTAAACACTATCTATGCTTGATACCAA 57.458 33.333 0.00 0.00 0.00 3.67
3003 3133 8.700973 TGTAAACACTATCTATGCTTGATACCA 58.299 33.333 0.00 0.00 0.00 3.25
3004 3134 9.712305 ATGTAAACACTATCTATGCTTGATACC 57.288 33.333 0.00 0.00 0.00 2.73
3030 3160 9.823647 TGAGTTTGGCACTTCAAATAAATTTTA 57.176 25.926 0.00 0.00 38.64 1.52
3031 3161 8.729805 TGAGTTTGGCACTTCAAATAAATTTT 57.270 26.923 0.00 0.00 38.64 1.82
3032 3162 8.729805 TTGAGTTTGGCACTTCAAATAAATTT 57.270 26.923 0.00 0.00 38.64 1.82
3033 3163 7.041848 GCTTGAGTTTGGCACTTCAAATAAATT 60.042 33.333 8.32 0.00 38.64 1.82
3034 3164 6.424812 GCTTGAGTTTGGCACTTCAAATAAAT 59.575 34.615 8.32 0.00 38.64 1.40
3035 3165 5.752955 GCTTGAGTTTGGCACTTCAAATAAA 59.247 36.000 8.32 0.00 38.64 1.40
3036 3166 5.288804 GCTTGAGTTTGGCACTTCAAATAA 58.711 37.500 8.32 0.00 38.64 1.40
3037 3167 4.870363 GCTTGAGTTTGGCACTTCAAATA 58.130 39.130 8.32 0.00 38.64 1.40
3038 3168 3.721035 GCTTGAGTTTGGCACTTCAAAT 58.279 40.909 8.32 0.00 38.64 2.32
3039 3169 3.163630 GCTTGAGTTTGGCACTTCAAA 57.836 42.857 8.32 0.00 35.01 2.69
3040 3170 2.869233 GCTTGAGTTTGGCACTTCAA 57.131 45.000 7.14 7.14 35.01 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.