Multiple sequence alignment - TraesCS2B01G371400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G371400 chr2B 100.000 6039 0 0 1 6039 529692675 529698713 0.000000e+00 11153.0
1 TraesCS2B01G371400 chr2B 85.253 651 72 16 50 689 773133299 773132662 0.000000e+00 649.0
2 TraesCS2B01G371400 chr2B 84.722 72 7 4 2425 2494 529694867 529694936 1.090000e-07 69.4
3 TraesCS2B01G371400 chr2B 84.722 72 7 4 2193 2262 529695099 529695168 1.090000e-07 69.4
4 TraesCS2B01G371400 chr2B 100.000 31 0 0 4538 4568 526749673 526749643 2.350000e-04 58.4
5 TraesCS2B01G371400 chr2B 100.000 31 0 0 4538 4568 526750537 526750507 2.350000e-04 58.4
6 TraesCS2B01G371400 chr2D 94.342 2881 109 20 693 3560 448525597 448522758 0.000000e+00 4368.0
7 TraesCS2B01G371400 chr2D 92.313 1522 81 15 4007 5510 448522334 448520831 0.000000e+00 2130.0
8 TraesCS2B01G371400 chr2D 89.177 693 38 22 1 689 527901943 527901284 0.000000e+00 830.0
9 TraesCS2B01G371400 chr2D 94.986 359 13 2 3559 3916 448522717 448522363 5.290000e-155 558.0
10 TraesCS2B01G371400 chr2D 90.265 113 8 3 5658 5768 448508534 448508423 1.750000e-30 145.0
11 TraesCS2B01G371400 chr2D 92.000 100 7 1 3841 3939 260370091 260369992 8.160000e-29 139.0
12 TraesCS2B01G371400 chr2D 91.919 99 7 1 3839 3936 160195453 160195551 2.940000e-28 137.0
13 TraesCS2B01G371400 chr2A 90.796 2260 113 31 3559 5772 594116002 594118212 0.000000e+00 2933.0
14 TraesCS2B01G371400 chr2A 92.585 1915 75 15 742 2634 594112951 594114820 0.000000e+00 2687.0
15 TraesCS2B01G371400 chr2A 93.975 863 38 9 2698 3560 594115115 594115963 0.000000e+00 1293.0
16 TraesCS2B01G371400 chr2A 96.875 32 1 0 4538 4569 575738739 575738770 3.000000e-03 54.7
17 TraesCS2B01G371400 chr6D 91.066 694 46 15 1 689 71020939 71021621 0.000000e+00 924.0
18 TraesCS2B01G371400 chr6D 83.894 416 47 15 4633 5042 280905696 280906097 4.420000e-101 379.0
19 TraesCS2B01G371400 chr6D 100.000 32 0 0 6008 6039 426479799 426479768 6.540000e-05 60.2
20 TraesCS2B01G371400 chr1D 90.818 697 49 15 1 693 24937075 24937760 0.000000e+00 918.0
21 TraesCS2B01G371400 chr1D 89.729 701 56 16 1 696 459875369 459876058 0.000000e+00 881.0
22 TraesCS2B01G371400 chr1D 91.304 46 3 1 5989 6033 24775203 24775158 1.820000e-05 62.1
23 TraesCS2B01G371400 chr1D 92.105 38 2 1 4538 4574 361198502 361198465 1.100000e-02 52.8
24 TraesCS2B01G371400 chr3B 89.725 691 53 13 3 689 679211362 679210686 0.000000e+00 867.0
25 TraesCS2B01G371400 chr3B 89.130 690 58 12 6 692 622136065 622135390 0.000000e+00 843.0
26 TraesCS2B01G371400 chr3B 81.425 716 70 35 1 689 125243839 125243160 1.490000e-145 527.0
27 TraesCS2B01G371400 chr3B 95.122 328 16 0 4645 4972 409599416 409599743 8.970000e-143 518.0
28 TraesCS2B01G371400 chr3B 78.179 747 86 42 1 694 804879383 804880105 7.290000e-109 405.0
29 TraesCS2B01G371400 chr3B 100.000 30 0 0 4539 4568 440125902 440125873 8.460000e-04 56.5
30 TraesCS2B01G371400 chr7D 89.255 698 54 18 1 692 572686372 572685690 0.000000e+00 854.0
31 TraesCS2B01G371400 chr7D 100.000 34 0 0 6006 6039 101777353 101777320 5.050000e-06 63.9
32 TraesCS2B01G371400 chr7D 100.000 32 0 0 6008 6039 89483218 89483187 6.540000e-05 60.2
33 TraesCS2B01G371400 chr7D 96.875 32 1 0 4538 4569 638271295 638271326 3.000000e-03 54.7
34 TraesCS2B01G371400 chr5B 89.226 594 50 10 3 595 286696943 286697523 0.000000e+00 730.0
35 TraesCS2B01G371400 chr5B 100.000 30 0 0 6008 6037 406606321 406606292 8.460000e-04 56.5
36 TraesCS2B01G371400 chr6B 84.135 416 46 16 4633 5042 440556064 440555663 9.490000e-103 385.0
37 TraesCS2B01G371400 chr6B 84.541 207 29 3 2988 3192 440556883 440556678 1.030000e-47 202.0
38 TraesCS2B01G371400 chr6A 84.135 416 46 16 4633 5042 401886486 401886085 9.490000e-103 385.0
39 TraesCS2B01G371400 chr6A 85.990 207 26 3 2988 3192 401887444 401887239 1.020000e-52 219.0
40 TraesCS2B01G371400 chr3D 91.429 105 7 2 3841 3943 426879578 426879682 6.310000e-30 143.0
41 TraesCS2B01G371400 chr3D 85.714 56 0 2 4538 4587 574859809 574859862 1.100000e-02 52.8
42 TraesCS2B01G371400 chr7B 92.929 99 4 3 3840 3936 697313072 697313169 2.270000e-29 141.0
43 TraesCS2B01G371400 chr5D 91.346 104 7 2 3835 3936 415615120 415615017 2.270000e-29 141.0
44 TraesCS2B01G371400 chr5D 100.000 29 0 0 6011 6039 529841441 529841413 3.000000e-03 54.7
45 TraesCS2B01G371400 chr7A 92.784 97 6 1 3841 3936 510625407 510625311 8.160000e-29 139.0
46 TraesCS2B01G371400 chr7A 90.385 104 9 1 3839 3941 2585108 2585211 1.060000e-27 135.0
47 TraesCS2B01G371400 chr7A 100.000 31 0 0 6009 6039 644005405 644005435 2.350000e-04 58.4
48 TraesCS2B01G371400 chr1A 100.000 32 0 0 6008 6039 517639951 517639982 6.540000e-05 60.2
49 TraesCS2B01G371400 chr5A 100.000 30 0 0 6008 6037 447140731 447140702 8.460000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G371400 chr2B 529692675 529698713 6038 False 3763.933333 11153 89.814667 1 6039 3 chr2B.!!$F1 6038
1 TraesCS2B01G371400 chr2B 773132662 773133299 637 True 649.000000 649 85.253000 50 689 1 chr2B.!!$R1 639
2 TraesCS2B01G371400 chr2D 448520831 448525597 4766 True 2352.000000 4368 93.880333 693 5510 3 chr2D.!!$R4 4817
3 TraesCS2B01G371400 chr2D 527901284 527901943 659 True 830.000000 830 89.177000 1 689 1 chr2D.!!$R3 688
4 TraesCS2B01G371400 chr2A 594112951 594118212 5261 False 2304.333333 2933 92.452000 742 5772 3 chr2A.!!$F2 5030
5 TraesCS2B01G371400 chr6D 71020939 71021621 682 False 924.000000 924 91.066000 1 689 1 chr6D.!!$F1 688
6 TraesCS2B01G371400 chr1D 24937075 24937760 685 False 918.000000 918 90.818000 1 693 1 chr1D.!!$F1 692
7 TraesCS2B01G371400 chr1D 459875369 459876058 689 False 881.000000 881 89.729000 1 696 1 chr1D.!!$F2 695
8 TraesCS2B01G371400 chr3B 679210686 679211362 676 True 867.000000 867 89.725000 3 689 1 chr3B.!!$R4 686
9 TraesCS2B01G371400 chr3B 622135390 622136065 675 True 843.000000 843 89.130000 6 692 1 chr3B.!!$R3 686
10 TraesCS2B01G371400 chr3B 125243160 125243839 679 True 527.000000 527 81.425000 1 689 1 chr3B.!!$R1 688
11 TraesCS2B01G371400 chr3B 804879383 804880105 722 False 405.000000 405 78.179000 1 694 1 chr3B.!!$F2 693
12 TraesCS2B01G371400 chr7D 572685690 572686372 682 True 854.000000 854 89.255000 1 692 1 chr7D.!!$R3 691
13 TraesCS2B01G371400 chr5B 286696943 286697523 580 False 730.000000 730 89.226000 3 595 1 chr5B.!!$F1 592
14 TraesCS2B01G371400 chr6B 440555663 440556883 1220 True 293.500000 385 84.338000 2988 5042 2 chr6B.!!$R1 2054
15 TraesCS2B01G371400 chr6A 401886085 401887444 1359 True 302.000000 385 85.062500 2988 5042 2 chr6A.!!$R1 2054

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
580 678 1.205179 CTCAGCTCAGCATGTCTCAGT 59.795 52.381 0.00 0.0 37.40 3.41 F
1042 1159 0.828022 TCCCACGCGGTAATCAATCT 59.172 50.000 12.47 0.0 0.00 2.40 F
2741 3148 0.037447 TGGTTCATCCATGCCGTCAA 59.963 50.000 0.00 0.0 41.93 3.18 F
3301 4143 0.527817 GAACGCACGTGGCTAGCTAT 60.528 55.000 18.88 0.0 41.67 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1631 1760 0.393132 TGCAGTGTGAAACGGAACCA 60.393 50.0 0.00 0.0 42.39 3.67 R
2819 3226 0.173481 TGAGTGCTGACTGGCGTATC 59.827 55.0 0.00 0.0 30.16 2.24 R
4182 5186 0.575390 CCGACGCTATAAACGGCTTG 59.425 55.0 0.00 0.0 38.98 4.01 R
5264 6292 0.181114 TGGCGGCTAAGCAATGAGAT 59.819 50.0 11.43 0.0 39.27 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
497 590 8.830201 TTTCCGATTTTGTTCATCATTCAAAT 57.170 26.923 0.00 0.00 32.41 2.32
580 678 1.205179 CTCAGCTCAGCATGTCTCAGT 59.795 52.381 0.00 0.00 37.40 3.41
644 742 5.302823 AGCATGTCTACACTCAGCATGTATA 59.697 40.000 0.00 0.00 39.11 1.47
649 747 6.828785 TGTCTACACTCAGCATGTATAAGAGA 59.171 38.462 0.00 0.00 37.40 3.10
660 760 7.225538 CAGCATGTATAAGAGAAACAACTAGGG 59.774 40.741 0.00 0.00 0.00 3.53
694 794 4.425180 TGCTACCAAACACACCTTTAGA 57.575 40.909 0.00 0.00 0.00 2.10
695 795 4.385825 TGCTACCAAACACACCTTTAGAG 58.614 43.478 0.00 0.00 0.00 2.43
824 924 2.402707 CGCGCGTGTCGTGTATAAATAT 59.597 45.455 24.19 0.00 43.21 1.28
825 925 3.477654 CGCGCGTGTCGTGTATAAATATC 60.478 47.826 24.19 0.00 43.21 1.63
862 962 4.077184 CGTCCCACCCAGCGCTTA 62.077 66.667 7.50 0.00 0.00 3.09
863 963 2.436115 GTCCCACCCAGCGCTTAC 60.436 66.667 7.50 0.00 0.00 2.34
864 964 2.606519 TCCCACCCAGCGCTTACT 60.607 61.111 7.50 0.00 0.00 2.24
865 965 2.125106 CCCACCCAGCGCTTACTC 60.125 66.667 7.50 0.00 0.00 2.59
943 1056 3.535629 CTCACCTTCCCTGCACGCA 62.536 63.158 0.00 0.00 0.00 5.24
944 1057 3.357079 CACCTTCCCTGCACGCAC 61.357 66.667 0.00 0.00 0.00 5.34
945 1058 4.988598 ACCTTCCCTGCACGCACG 62.989 66.667 0.00 0.00 0.00 5.34
1042 1159 0.828022 TCCCACGCGGTAATCAATCT 59.172 50.000 12.47 0.00 0.00 2.40
1105 1222 1.795170 TTCTTGTTTCTGCCTGCGCC 61.795 55.000 4.18 0.00 0.00 6.53
1478 1595 1.833630 CCTAGGTGTCTGCATCTTCCA 59.166 52.381 0.00 0.00 37.28 3.53
1520 1637 1.173913 GCGCCACCAAAGTTATTCCT 58.826 50.000 0.00 0.00 0.00 3.36
1754 1883 1.202639 TCACTCTCAGAAAAGCCGCAA 60.203 47.619 0.00 0.00 0.00 4.85
1841 1970 1.214589 CGTTCCCCGTTCGTCATCT 59.785 57.895 0.00 0.00 0.00 2.90
1842 1971 1.076533 CGTTCCCCGTTCGTCATCTG 61.077 60.000 0.00 0.00 0.00 2.90
1954 2083 1.027357 CCGGTACAGTACGCACCTAT 58.973 55.000 4.58 0.00 0.00 2.57
2064 2205 0.861837 CAAGTGTGCCTCGTTGACTC 59.138 55.000 0.00 0.00 0.00 3.36
2166 2307 8.817100 TGCACTAAAGATTTTAGTATCATGTCG 58.183 33.333 12.41 2.06 33.80 4.35
2255 2396 7.062255 GCTTGAACTTATGGTTGCATTCTTTAC 59.938 37.037 0.00 0.00 38.41 2.01
2342 2483 0.748005 GCGAGCCAAGCCAAGGATAA 60.748 55.000 0.00 0.00 0.00 1.75
2380 2521 6.071278 TGTTGTTATATAACCCAAACCAAGCC 60.071 38.462 20.35 0.24 35.37 4.35
2515 2657 2.474032 GCACACGCGTCTTCCTTATTTC 60.474 50.000 9.86 0.00 0.00 2.17
2516 2658 2.993899 CACACGCGTCTTCCTTATTTCT 59.006 45.455 9.86 0.00 0.00 2.52
2574 2722 6.338146 TGTTGTCATATAGGAGAAGAAACGG 58.662 40.000 0.00 0.00 0.00 4.44
2693 3100 7.710907 TCATGCCACTTAATCATGTAGAAGTAC 59.289 37.037 8.03 0.00 38.82 2.73
2694 3101 7.182817 TGCCACTTAATCATGTAGAAGTACT 57.817 36.000 8.03 0.00 31.05 2.73
2695 3102 7.041721 TGCCACTTAATCATGTAGAAGTACTG 58.958 38.462 0.00 0.00 31.05 2.74
2696 3103 6.018669 GCCACTTAATCATGTAGAAGTACTGC 60.019 42.308 0.00 0.00 31.05 4.40
2697 3104 6.480320 CCACTTAATCATGTAGAAGTACTGCC 59.520 42.308 0.00 0.00 31.05 4.85
2698 3105 6.480320 CACTTAATCATGTAGAAGTACTGCCC 59.520 42.308 0.00 0.00 31.05 5.36
2699 3106 6.156256 ACTTAATCATGTAGAAGTACTGCCCA 59.844 38.462 0.00 0.00 30.45 5.36
2700 3107 5.636903 AATCATGTAGAAGTACTGCCCAT 57.363 39.130 0.00 0.00 0.00 4.00
2726 3133 2.031870 GGCTCTCCAACTTTGTTGGTT 58.968 47.619 23.49 0.00 40.40 3.67
2739 3146 0.451783 GTTGGTTCATCCATGCCGTC 59.548 55.000 0.00 0.00 46.60 4.79
2741 3148 0.037447 TGGTTCATCCATGCCGTCAA 59.963 50.000 0.00 0.00 41.93 3.18
2786 3193 8.950403 AACTTTTCGAAAGCATACTTTGATAC 57.050 30.769 10.98 0.00 46.20 2.24
2793 3200 7.549134 TCGAAAGCATACTTTGATACTTGTGAT 59.451 33.333 0.00 0.00 46.20 3.06
2819 3226 1.372087 GCCGGAGAGTGAAAGGCATG 61.372 60.000 5.05 0.00 46.48 4.06
2824 3231 3.126831 GGAGAGTGAAAGGCATGATACG 58.873 50.000 0.00 0.00 0.00 3.06
2912 3319 1.433053 TTGTTTCACGACCACGCAGG 61.433 55.000 0.00 0.00 43.96 4.85
2926 3333 1.873591 ACGCAGGTGTAAAGAAGCAAG 59.126 47.619 0.00 0.00 0.00 4.01
2946 3353 2.685999 GGCATGGCCTTCCTTCCT 59.314 61.111 8.35 0.00 46.69 3.36
2947 3354 1.454663 GGCATGGCCTTCCTTCCTC 60.455 63.158 8.35 0.00 46.69 3.71
2948 3355 1.454663 GCATGGCCTTCCTTCCTCC 60.455 63.158 3.32 0.00 0.00 4.30
2949 3356 1.153086 CATGGCCTTCCTTCCTCCG 60.153 63.158 3.32 0.00 0.00 4.63
2950 3357 2.378634 ATGGCCTTCCTTCCTCCGG 61.379 63.158 3.32 0.00 0.00 5.14
2954 3361 3.775654 CTTCCTTCCTCCGGCGCT 61.776 66.667 7.64 0.00 0.00 5.92
2955 3362 4.082523 TTCCTTCCTCCGGCGCTG 62.083 66.667 9.96 9.96 0.00 5.18
2969 3376 2.286418 CGGCGCTGGAATTAATGAAGTC 60.286 50.000 8.83 0.00 0.00 3.01
2970 3377 2.682856 GGCGCTGGAATTAATGAAGTCA 59.317 45.455 7.64 0.00 31.12 3.41
3102 3509 4.749310 CTGCTGACCGAGGCGCTT 62.749 66.667 7.64 0.00 0.00 4.68
3156 3563 1.411977 CGGATCCTCAACATCAGCTCT 59.588 52.381 10.75 0.00 0.00 4.09
3210 3617 6.653740 GCATGTTCATTCAGATCAGATGGATA 59.346 38.462 0.00 0.00 36.00 2.59
3301 4143 0.527817 GAACGCACGTGGCTAGCTAT 60.528 55.000 18.88 0.00 41.67 2.97
3316 4251 6.657117 TGGCTAGCTATGTATAGAGACAAGAG 59.343 42.308 15.72 0.00 31.83 2.85
3397 4332 2.703536 ACCAGTACATTGTCCACTCACA 59.296 45.455 0.00 0.00 0.00 3.58
3434 4369 7.287466 TGCATATATGTCCAAATTAAGCCACTT 59.713 33.333 14.14 0.00 0.00 3.16
3520 4455 4.798387 CGTTTTCTTTCCACAAAACTCCAG 59.202 41.667 5.90 0.00 39.40 3.86
3578 4555 6.435292 ACCTACAGAGTTAGGTGTTCAATT 57.565 37.500 0.90 0.00 44.43 2.32
3599 4576 5.450818 TTCTGCCCACCAGTATATTCTTT 57.549 39.130 0.00 0.00 42.38 2.52
3658 4635 8.026607 TCGCCTTTTTCTTCCTTATAAATTGTG 58.973 33.333 0.00 0.00 0.00 3.33
3824 4801 7.507616 ACAGGAACCCACTTGATAAAATTTACA 59.492 33.333 0.00 0.00 0.00 2.41
3850 4828 3.233507 ACGTAAAACAGTACTCCCTCCA 58.766 45.455 0.00 0.00 0.00 3.86
3853 4831 4.081862 CGTAAAACAGTACTCCCTCCATCA 60.082 45.833 0.00 0.00 0.00 3.07
3871 4849 7.121759 CCTCCATCACAAAATAACTGTCTCAAT 59.878 37.037 0.00 0.00 0.00 2.57
3936 4914 5.362143 ACTTATTTTAGGACGGAGGGAGTAC 59.638 44.000 0.00 0.00 0.00 2.73
4000 4978 5.977489 AAAAGGGAAAATGGTAGTGCTAC 57.023 39.130 0.95 0.95 35.40 3.58
4001 4979 4.650972 AAGGGAAAATGGTAGTGCTACA 57.349 40.909 10.98 0.00 37.78 2.74
4002 4980 4.650972 AGGGAAAATGGTAGTGCTACAA 57.349 40.909 10.98 0.49 37.78 2.41
4003 4981 5.193099 AGGGAAAATGGTAGTGCTACAAT 57.807 39.130 10.98 2.88 37.78 2.71
4004 4982 5.580022 AGGGAAAATGGTAGTGCTACAATT 58.420 37.500 10.98 8.56 40.44 2.32
4005 4983 6.016555 AGGGAAAATGGTAGTGCTACAATTT 58.983 36.000 15.38 15.38 46.28 1.82
4123 5127 5.069119 TGGATGACGAGCAAATATAGTGTCT 59.931 40.000 0.00 0.00 0.00 3.41
4168 5172 1.482593 AGAGGAACCACAATAGAGGCG 59.517 52.381 0.00 0.00 0.00 5.52
4182 5186 1.202698 AGAGGCGAATCTGGTAATGGC 60.203 52.381 0.00 0.00 0.00 4.40
4221 5226 6.020599 CGTCGGAAGTTGATTACAATAGTCAG 60.021 42.308 0.00 0.00 38.32 3.51
4222 5227 5.810587 TCGGAAGTTGATTACAATAGTCAGC 59.189 40.000 0.00 0.00 38.32 4.26
4288 5293 0.452987 CATGGCGGGAACATTCACAG 59.547 55.000 0.00 0.00 0.00 3.66
4367 5374 3.367087 GCTCGTAAGCTCACCTAACAGAA 60.367 47.826 0.00 0.00 45.55 3.02
4389 5396 0.250770 AAAAGGGAAGTCTCGGCACC 60.251 55.000 0.00 0.00 0.00 5.01
4451 5458 5.766150 TGGAAAACACACATTGGAACTAG 57.234 39.130 0.00 0.00 0.00 2.57
4531 5538 4.146745 TCATAGAGGTAGAGTGTGCGTA 57.853 45.455 0.00 0.00 0.00 4.42
4563 5574 4.048504 GTGTATGTGCGTATGTATGAGCA 58.951 43.478 0.00 0.00 37.26 4.26
4577 5588 9.261180 GTATGTATGAGCATATGTACTGTGTTT 57.739 33.333 4.29 0.00 34.35 2.83
4578 5589 7.538303 TGTATGAGCATATGTACTGTGTTTG 57.462 36.000 4.29 0.00 0.00 2.93
4583 5594 7.935520 TGAGCATATGTACTGTGTTTGAAAAA 58.064 30.769 4.29 0.00 0.00 1.94
4606 5618 4.913335 AAGCGATAGACCGTATCTTGAA 57.087 40.909 0.00 0.00 39.04 2.69
4708 5720 2.279784 GAGGGCAAGATCGAGGCG 60.280 66.667 7.66 0.00 0.00 5.52
5093 6117 2.740714 GCGTGGTCGATGGTTGCTC 61.741 63.158 0.00 0.00 39.71 4.26
5160 6185 3.234386 GTTTCAGTTTAGCCATCGTTGC 58.766 45.455 0.00 0.00 0.00 4.17
5169 6197 0.375106 GCCATCGTTGCTGCTAGTTC 59.625 55.000 0.00 0.00 0.00 3.01
5232 6260 0.036388 TTCCACTCGTCCCATTGCTC 60.036 55.000 0.00 0.00 0.00 4.26
5241 6269 2.570135 GTCCCATTGCTCTGGATCTTC 58.430 52.381 6.69 0.00 38.69 2.87
5244 6272 1.938577 CCATTGCTCTGGATCTTCACG 59.061 52.381 0.00 0.00 38.69 4.35
5248 6276 1.513158 CTCTGGATCTTCACGCGGT 59.487 57.895 12.47 0.00 0.00 5.68
5264 6292 2.801699 CGCGGTATGGATTCAAGTAGCA 60.802 50.000 0.00 0.00 0.00 3.49
5281 6309 0.040603 GCATCTCATTGCTTAGCCGC 60.041 55.000 0.29 0.00 39.57 6.53
5286 6322 2.824041 ATTGCTTAGCCGCCACCG 60.824 61.111 0.29 0.00 0.00 4.94
5298 6334 0.872021 CGCCACCGAGATTGTAGAGC 60.872 60.000 0.00 0.00 36.29 4.09
5311 6347 0.318441 GTAGAGCACAGTGTGAGCCA 59.682 55.000 27.37 5.74 34.43 4.75
5314 6350 0.318441 GAGCACAGTGTGAGCCAGTA 59.682 55.000 27.37 0.00 34.43 2.74
5316 6352 1.081892 GCACAGTGTGAGCCAGTATG 58.918 55.000 27.37 0.00 35.23 2.39
5358 6402 1.893808 CAGAAGCACCGGCACTGTT 60.894 57.895 0.00 0.00 44.61 3.16
5359 6403 1.152963 AGAAGCACCGGCACTGTTT 60.153 52.632 0.00 0.00 44.61 2.83
5380 6426 2.976185 TGTGTGACAATGTCCCCTCTTA 59.024 45.455 11.24 0.00 0.00 2.10
5392 6438 0.396060 CCCTCTTAGCCAGATGGAGC 59.604 60.000 2.18 0.00 39.21 4.70
5410 6456 6.829229 TGGAGCATAATTTGGATGATCATC 57.171 37.500 24.90 24.90 40.67 2.92
5423 6469 3.264922 TGATCATCTCATAGCAGGGGA 57.735 47.619 0.00 0.00 0.00 4.81
5425 6471 2.783379 TCATCTCATAGCAGGGGACT 57.217 50.000 0.00 0.00 46.44 3.85
5426 6472 3.051940 TCATCTCATAGCAGGGGACTT 57.948 47.619 0.00 0.00 40.21 3.01
5427 6473 2.702478 TCATCTCATAGCAGGGGACTTG 59.298 50.000 0.00 0.00 40.21 3.16
5428 6474 0.833287 TCTCATAGCAGGGGACTTGC 59.167 55.000 0.00 0.00 40.21 4.01
5429 6475 0.179034 CTCATAGCAGGGGACTTGCC 60.179 60.000 0.00 0.00 40.21 4.52
5430 6476 0.621571 TCATAGCAGGGGACTTGCCT 60.622 55.000 0.00 0.00 40.21 4.75
5431 6477 0.257039 CATAGCAGGGGACTTGCCTT 59.743 55.000 0.00 0.00 40.21 4.35
5432 6478 0.257039 ATAGCAGGGGACTTGCCTTG 59.743 55.000 0.00 0.00 40.21 3.61
5433 6479 1.852157 TAGCAGGGGACTTGCCTTGG 61.852 60.000 1.05 0.00 40.21 3.61
5434 6480 2.677875 CAGGGGACTTGCCTTGGC 60.678 66.667 4.43 4.43 40.21 4.52
5435 6481 3.984732 AGGGGACTTGCCTTGGCC 61.985 66.667 9.35 0.00 37.44 5.36
5437 6483 2.677875 GGGACTTGCCTTGGCCAG 60.678 66.667 5.11 10.08 36.66 4.85
5469 6515 0.678048 ATGTTCGCTTCCTTGCTCCC 60.678 55.000 0.00 0.00 0.00 4.30
5470 6516 1.003233 GTTCGCTTCCTTGCTCCCT 60.003 57.895 0.00 0.00 0.00 4.20
5490 6536 2.028876 TCGGAGATCGCTTGTATTCCA 58.971 47.619 0.00 0.00 39.05 3.53
5538 6586 4.806330 AGTTTCGATGTTGTACTGATCGT 58.194 39.130 16.20 0.00 39.93 3.73
5551 6601 7.112528 TGTACTGATCGTTATGTTTGTGTTC 57.887 36.000 0.00 0.00 0.00 3.18
5556 6606 2.867368 TCGTTATGTTTGTGTTCGTGCT 59.133 40.909 0.00 0.00 0.00 4.40
5557 6607 2.964123 CGTTATGTTTGTGTTCGTGCTG 59.036 45.455 0.00 0.00 0.00 4.41
5558 6608 3.296628 GTTATGTTTGTGTTCGTGCTGG 58.703 45.455 0.00 0.00 0.00 4.85
5580 6630 4.037208 GGCTGAGCAATACAGTTTATGCAT 59.963 41.667 6.82 3.79 41.18 3.96
5583 6633 6.514541 GCTGAGCAATACAGTTTATGCATGAT 60.515 38.462 10.16 0.00 41.18 2.45
5585 6635 6.319405 TGAGCAATACAGTTTATGCATGATGT 59.681 34.615 10.16 10.78 41.18 3.06
5600 6650 6.754702 GCATGATGTAGATCAAGCCAATAT 57.245 37.500 16.79 0.00 44.19 1.28
5601 6651 7.854557 GCATGATGTAGATCAAGCCAATATA 57.145 36.000 16.79 0.00 44.19 0.86
5604 6654 9.609346 CATGATGTAGATCAAGCCAATATATGA 57.391 33.333 6.65 0.00 42.02 2.15
5637 6687 6.925610 TTTCACCTTAGCTATATGCAAGTG 57.074 37.500 0.00 0.00 45.94 3.16
5638 6688 5.614324 TCACCTTAGCTATATGCAAGTGT 57.386 39.130 0.00 0.00 45.94 3.55
5649 6699 6.694411 GCTATATGCAAGTGTCCTGATTTTTG 59.306 38.462 0.00 0.00 42.31 2.44
5652 6702 5.336150 TGCAAGTGTCCTGATTTTTGAAA 57.664 34.783 0.00 0.00 0.00 2.69
5654 6704 6.347696 TGCAAGTGTCCTGATTTTTGAAATT 58.652 32.000 0.00 0.00 0.00 1.82
5655 6705 6.258287 TGCAAGTGTCCTGATTTTTGAAATTG 59.742 34.615 0.00 0.00 0.00 2.32
5657 6707 5.857268 AGTGTCCTGATTTTTGAAATTGGG 58.143 37.500 0.00 0.00 0.00 4.12
5666 6716 7.957002 TGATTTTTGAAATTGGGTAAGCAGTA 58.043 30.769 0.00 0.00 0.00 2.74
5677 6728 1.060729 TAAGCAGTAGTGGGGCAACA 58.939 50.000 0.00 0.00 39.74 3.33
5681 6732 1.269569 GCAGTAGTGGGGCAACAAAAC 60.270 52.381 0.00 0.00 39.74 2.43
5704 6755 3.692690 TGAGTAATGGGCCAGTTTTACC 58.307 45.455 13.49 10.22 0.00 2.85
5758 6809 1.941377 AGATTTTGCATTGGCTGGGA 58.059 45.000 0.00 0.00 41.91 4.37
5764 6815 4.431131 CATTGGCTGGGAGGCGGT 62.431 66.667 0.00 0.00 44.78 5.68
5777 6828 2.514824 GCGGTGGCCCAGAGATTC 60.515 66.667 0.00 0.00 0.00 2.52
5778 6829 2.989639 CGGTGGCCCAGAGATTCA 59.010 61.111 0.00 0.00 0.00 2.57
5779 6830 1.528824 CGGTGGCCCAGAGATTCAT 59.471 57.895 0.00 0.00 0.00 2.57
5780 6831 0.816825 CGGTGGCCCAGAGATTCATG 60.817 60.000 0.00 0.00 0.00 3.07
5781 6832 1.105759 GGTGGCCCAGAGATTCATGC 61.106 60.000 0.00 0.00 0.00 4.06
5782 6833 0.106819 GTGGCCCAGAGATTCATGCT 60.107 55.000 0.00 0.00 0.00 3.79
5783 6834 0.106868 TGGCCCAGAGATTCATGCTG 60.107 55.000 0.00 0.00 0.00 4.41
5784 6835 0.106819 GGCCCAGAGATTCATGCTGT 60.107 55.000 0.00 0.00 0.00 4.40
5785 6836 1.684248 GGCCCAGAGATTCATGCTGTT 60.684 52.381 0.00 0.00 0.00 3.16
5786 6837 1.674962 GCCCAGAGATTCATGCTGTTC 59.325 52.381 0.00 0.00 0.00 3.18
5787 6838 2.683152 GCCCAGAGATTCATGCTGTTCT 60.683 50.000 0.00 0.00 0.00 3.01
5788 6839 3.618351 CCCAGAGATTCATGCTGTTCTT 58.382 45.455 0.00 0.00 0.00 2.52
5789 6840 4.015084 CCCAGAGATTCATGCTGTTCTTT 58.985 43.478 0.00 0.00 0.00 2.52
5790 6841 4.461781 CCCAGAGATTCATGCTGTTCTTTT 59.538 41.667 0.00 0.00 0.00 2.27
5791 6842 5.649395 CCCAGAGATTCATGCTGTTCTTTTA 59.351 40.000 0.00 0.00 0.00 1.52
5792 6843 6.320672 CCCAGAGATTCATGCTGTTCTTTTAT 59.679 38.462 0.00 0.00 0.00 1.40
5793 6844 7.147949 CCCAGAGATTCATGCTGTTCTTTTATT 60.148 37.037 0.00 0.00 0.00 1.40
5794 6845 8.896744 CCAGAGATTCATGCTGTTCTTTTATTA 58.103 33.333 0.00 0.00 0.00 0.98
5808 6859 9.554724 TGTTCTTTTATTATGTTCTTTCATCGC 57.445 29.630 0.00 0.00 0.00 4.58
5809 6860 9.774742 GTTCTTTTATTATGTTCTTTCATCGCT 57.225 29.630 0.00 0.00 0.00 4.93
5811 6862 9.988350 TCTTTTATTATGTTCTTTCATCGCTTC 57.012 29.630 0.00 0.00 0.00 3.86
5812 6863 9.994432 CTTTTATTATGTTCTTTCATCGCTTCT 57.006 29.630 0.00 0.00 0.00 2.85
5816 6867 8.723942 ATTATGTTCTTTCATCGCTTCTTAGT 57.276 30.769 0.00 0.00 0.00 2.24
5817 6868 8.547967 TTATGTTCTTTCATCGCTTCTTAGTT 57.452 30.769 0.00 0.00 0.00 2.24
5818 6869 9.647797 TTATGTTCTTTCATCGCTTCTTAGTTA 57.352 29.630 0.00 0.00 0.00 2.24
5819 6870 7.582435 TGTTCTTTCATCGCTTCTTAGTTAG 57.418 36.000 0.00 0.00 0.00 2.34
5820 6871 7.152645 TGTTCTTTCATCGCTTCTTAGTTAGT 58.847 34.615 0.00 0.00 0.00 2.24
5821 6872 7.656137 TGTTCTTTCATCGCTTCTTAGTTAGTT 59.344 33.333 0.00 0.00 0.00 2.24
5822 6873 8.496751 GTTCTTTCATCGCTTCTTAGTTAGTTT 58.503 33.333 0.00 0.00 0.00 2.66
5823 6874 8.603242 TCTTTCATCGCTTCTTAGTTAGTTTT 57.397 30.769 0.00 0.00 0.00 2.43
5824 6875 9.052759 TCTTTCATCGCTTCTTAGTTAGTTTTT 57.947 29.630 0.00 0.00 0.00 1.94
5825 6876 9.107367 CTTTCATCGCTTCTTAGTTAGTTTTTG 57.893 33.333 0.00 0.00 0.00 2.44
5826 6877 7.956420 TCATCGCTTCTTAGTTAGTTTTTGA 57.044 32.000 0.00 0.00 0.00 2.69
5827 6878 7.793902 TCATCGCTTCTTAGTTAGTTTTTGAC 58.206 34.615 0.00 0.00 0.00 3.18
5828 6879 7.656137 TCATCGCTTCTTAGTTAGTTTTTGACT 59.344 33.333 0.00 0.00 42.55 3.41
5829 6880 7.781548 TCGCTTCTTAGTTAGTTTTTGACTT 57.218 32.000 0.00 0.00 39.86 3.01
5830 6881 7.627340 TCGCTTCTTAGTTAGTTTTTGACTTG 58.373 34.615 0.00 0.00 39.86 3.16
5831 6882 6.357240 CGCTTCTTAGTTAGTTTTTGACTTGC 59.643 38.462 0.00 0.00 39.86 4.01
5832 6883 7.418408 GCTTCTTAGTTAGTTTTTGACTTGCT 58.582 34.615 0.00 0.00 39.86 3.91
5833 6884 7.915923 GCTTCTTAGTTAGTTTTTGACTTGCTT 59.084 33.333 0.00 0.00 39.86 3.91
5834 6885 9.226345 CTTCTTAGTTAGTTTTTGACTTGCTTG 57.774 33.333 0.00 0.00 39.86 4.01
5835 6886 8.276252 TCTTAGTTAGTTTTTGACTTGCTTGT 57.724 30.769 0.00 0.00 39.86 3.16
5836 6887 8.736244 TCTTAGTTAGTTTTTGACTTGCTTGTT 58.264 29.630 0.00 0.00 39.86 2.83
5837 6888 9.353999 CTTAGTTAGTTTTTGACTTGCTTGTTT 57.646 29.630 0.00 0.00 39.86 2.83
5839 6890 8.911247 AGTTAGTTTTTGACTTGCTTGTTTAG 57.089 30.769 0.00 0.00 39.86 1.85
5840 6891 7.973944 AGTTAGTTTTTGACTTGCTTGTTTAGG 59.026 33.333 0.00 0.00 39.86 2.69
5841 6892 5.660460 AGTTTTTGACTTGCTTGTTTAGGG 58.340 37.500 0.00 0.00 33.92 3.53
5842 6893 3.726291 TTTGACTTGCTTGTTTAGGGC 57.274 42.857 0.00 0.00 0.00 5.19
5843 6894 2.356665 TGACTTGCTTGTTTAGGGCA 57.643 45.000 0.00 0.00 0.00 5.36
5844 6895 2.660572 TGACTTGCTTGTTTAGGGCAA 58.339 42.857 0.00 0.00 42.54 4.52
5848 6899 3.451141 TTGCTTGTTTAGGGCAAGTTG 57.549 42.857 0.00 0.00 43.65 3.16
5849 6900 2.660572 TGCTTGTTTAGGGCAAGTTGA 58.339 42.857 7.16 0.00 43.65 3.18
5850 6901 3.230134 TGCTTGTTTAGGGCAAGTTGAT 58.770 40.909 7.16 0.00 43.65 2.57
5851 6902 3.640967 TGCTTGTTTAGGGCAAGTTGATT 59.359 39.130 7.16 0.00 43.65 2.57
5852 6903 4.100808 TGCTTGTTTAGGGCAAGTTGATTT 59.899 37.500 7.16 0.00 43.65 2.17
5853 6904 5.056480 GCTTGTTTAGGGCAAGTTGATTTT 58.944 37.500 7.16 0.00 43.65 1.82
5854 6905 5.527214 GCTTGTTTAGGGCAAGTTGATTTTT 59.473 36.000 7.16 0.00 43.65 1.94
5878 6929 7.562454 TTTTCTAGGTTGAATTTTGACTCGT 57.438 32.000 0.00 0.00 0.00 4.18
5879 6930 6.780706 TTCTAGGTTGAATTTTGACTCGTC 57.219 37.500 0.00 0.00 0.00 4.20
5880 6931 6.097915 TCTAGGTTGAATTTTGACTCGTCT 57.902 37.500 0.00 0.00 0.00 4.18
5881 6932 6.157211 TCTAGGTTGAATTTTGACTCGTCTC 58.843 40.000 0.00 0.00 0.00 3.36
5882 6933 4.962155 AGGTTGAATTTTGACTCGTCTCT 58.038 39.130 0.00 0.00 0.00 3.10
5883 6934 4.752101 AGGTTGAATTTTGACTCGTCTCTG 59.248 41.667 0.00 0.00 0.00 3.35
5884 6935 4.511826 GGTTGAATTTTGACTCGTCTCTGT 59.488 41.667 0.00 0.00 0.00 3.41
5885 6936 5.007724 GGTTGAATTTTGACTCGTCTCTGTT 59.992 40.000 0.00 0.00 0.00 3.16
5886 6937 6.202188 GGTTGAATTTTGACTCGTCTCTGTTA 59.798 38.462 0.00 0.00 0.00 2.41
5887 6938 7.284351 GTTGAATTTTGACTCGTCTCTGTTAG 58.716 38.462 0.00 0.00 0.00 2.34
5888 6939 5.926542 TGAATTTTGACTCGTCTCTGTTAGG 59.073 40.000 0.00 0.00 0.00 2.69
5889 6940 3.936372 TTTGACTCGTCTCTGTTAGGG 57.064 47.619 0.00 0.00 0.00 3.53
5890 6941 1.835494 TGACTCGTCTCTGTTAGGGG 58.165 55.000 0.00 0.00 0.00 4.79
5891 6942 1.075050 TGACTCGTCTCTGTTAGGGGT 59.925 52.381 0.00 0.00 0.00 4.95
5892 6943 2.169330 GACTCGTCTCTGTTAGGGGTT 58.831 52.381 0.00 0.00 0.00 4.11
5893 6944 3.245016 TGACTCGTCTCTGTTAGGGGTTA 60.245 47.826 0.00 0.00 0.00 2.85
5894 6945 3.354467 ACTCGTCTCTGTTAGGGGTTAG 58.646 50.000 0.00 0.00 0.00 2.34
5895 6946 3.245193 ACTCGTCTCTGTTAGGGGTTAGT 60.245 47.826 0.00 0.00 0.00 2.24
5896 6947 3.350833 TCGTCTCTGTTAGGGGTTAGTC 58.649 50.000 0.00 0.00 0.00 2.59
5897 6948 2.097142 CGTCTCTGTTAGGGGTTAGTCG 59.903 54.545 0.00 0.00 0.00 4.18
5898 6949 3.350833 GTCTCTGTTAGGGGTTAGTCGA 58.649 50.000 0.00 0.00 0.00 4.20
5899 6950 3.952967 GTCTCTGTTAGGGGTTAGTCGAT 59.047 47.826 0.00 0.00 0.00 3.59
5900 6951 4.401837 GTCTCTGTTAGGGGTTAGTCGATT 59.598 45.833 0.00 0.00 0.00 3.34
5901 6952 5.021458 TCTCTGTTAGGGGTTAGTCGATTT 58.979 41.667 0.00 0.00 0.00 2.17
5902 6953 5.482878 TCTCTGTTAGGGGTTAGTCGATTTT 59.517 40.000 0.00 0.00 0.00 1.82
5903 6954 6.013984 TCTCTGTTAGGGGTTAGTCGATTTTT 60.014 38.462 0.00 0.00 0.00 1.94
5904 6955 6.168389 TCTGTTAGGGGTTAGTCGATTTTTC 58.832 40.000 0.00 0.00 0.00 2.29
5905 6956 4.931002 TGTTAGGGGTTAGTCGATTTTTCG 59.069 41.667 0.00 0.00 0.00 3.46
5906 6957 2.353323 AGGGGTTAGTCGATTTTTCGC 58.647 47.619 0.00 0.00 0.00 4.70
5907 6958 2.027469 AGGGGTTAGTCGATTTTTCGCT 60.027 45.455 0.00 0.00 0.00 4.93
5908 6959 2.745821 GGGGTTAGTCGATTTTTCGCTT 59.254 45.455 0.00 0.00 0.00 4.68
5909 6960 3.425758 GGGGTTAGTCGATTTTTCGCTTG 60.426 47.826 0.00 0.00 0.00 4.01
5910 6961 3.434299 GGGTTAGTCGATTTTTCGCTTGA 59.566 43.478 0.00 0.00 0.00 3.02
5911 6962 4.083696 GGGTTAGTCGATTTTTCGCTTGAA 60.084 41.667 0.00 0.00 0.00 2.69
5912 6963 5.445845 GGTTAGTCGATTTTTCGCTTGAAA 58.554 37.500 0.00 0.00 39.77 2.69
5913 6964 5.338822 GGTTAGTCGATTTTTCGCTTGAAAC 59.661 40.000 0.00 0.00 41.15 2.78
5914 6965 3.885358 AGTCGATTTTTCGCTTGAAACC 58.115 40.909 0.00 0.00 41.15 3.27
5915 6966 2.977829 GTCGATTTTTCGCTTGAAACCC 59.022 45.455 0.00 0.00 41.15 4.11
5916 6967 1.976045 CGATTTTTCGCTTGAAACCCG 59.024 47.619 0.00 0.00 41.15 5.28
5917 6968 2.603652 CGATTTTTCGCTTGAAACCCGT 60.604 45.455 0.00 0.00 41.15 5.28
5918 6969 2.943449 TTTTTCGCTTGAAACCCGTT 57.057 40.000 0.00 0.00 41.15 4.44
5919 6970 4.538917 GATTTTTCGCTTGAAACCCGTTA 58.461 39.130 0.00 0.00 41.15 3.18
5920 6971 4.571372 TTTTTCGCTTGAAACCCGTTAT 57.429 36.364 0.00 0.00 41.15 1.89
5921 6972 5.686159 TTTTTCGCTTGAAACCCGTTATA 57.314 34.783 0.00 0.00 41.15 0.98
5922 6973 4.666928 TTTCGCTTGAAACCCGTTATAC 57.333 40.909 0.00 0.00 36.69 1.47
5923 6974 3.316071 TCGCTTGAAACCCGTTATACA 57.684 42.857 0.00 0.00 0.00 2.29
5924 6975 3.864243 TCGCTTGAAACCCGTTATACAT 58.136 40.909 0.00 0.00 0.00 2.29
5925 6976 4.255301 TCGCTTGAAACCCGTTATACATT 58.745 39.130 0.00 0.00 0.00 2.71
5926 6977 4.093703 TCGCTTGAAACCCGTTATACATTG 59.906 41.667 0.00 0.00 0.00 2.82
5927 6978 4.102649 GCTTGAAACCCGTTATACATTGC 58.897 43.478 0.00 0.00 0.00 3.56
5928 6979 4.668289 CTTGAAACCCGTTATACATTGCC 58.332 43.478 0.00 0.00 0.00 4.52
5929 6980 3.958018 TGAAACCCGTTATACATTGCCT 58.042 40.909 0.00 0.00 0.00 4.75
5930 6981 3.692101 TGAAACCCGTTATACATTGCCTG 59.308 43.478 0.00 0.00 0.00 4.85
5931 6982 3.359695 AACCCGTTATACATTGCCTGT 57.640 42.857 0.00 0.00 42.13 4.00
5932 6983 3.359695 ACCCGTTATACATTGCCTGTT 57.640 42.857 0.00 0.00 39.39 3.16
5933 6984 3.692690 ACCCGTTATACATTGCCTGTTT 58.307 40.909 0.00 0.00 39.39 2.83
5934 6985 4.083565 ACCCGTTATACATTGCCTGTTTT 58.916 39.130 0.00 0.00 39.39 2.43
5935 6986 4.525100 ACCCGTTATACATTGCCTGTTTTT 59.475 37.500 0.00 0.00 39.39 1.94
5936 6987 4.862018 CCCGTTATACATTGCCTGTTTTTG 59.138 41.667 0.00 0.00 39.39 2.44
5937 6988 5.465935 CCGTTATACATTGCCTGTTTTTGT 58.534 37.500 0.00 0.00 39.39 2.83
5938 6989 5.923684 CCGTTATACATTGCCTGTTTTTGTT 59.076 36.000 0.00 0.00 39.39 2.83
5939 6990 6.422400 CCGTTATACATTGCCTGTTTTTGTTT 59.578 34.615 0.00 0.00 39.39 2.83
5940 6991 7.280055 CGTTATACATTGCCTGTTTTTGTTTG 58.720 34.615 0.00 0.00 39.39 2.93
5941 6992 7.043059 CGTTATACATTGCCTGTTTTTGTTTGT 60.043 33.333 0.00 0.00 39.39 2.83
5942 6993 9.250624 GTTATACATTGCCTGTTTTTGTTTGTA 57.749 29.630 0.00 0.00 39.39 2.41
5943 6994 9.988815 TTATACATTGCCTGTTTTTGTTTGTAT 57.011 25.926 0.00 0.00 39.39 2.29
5944 6995 6.601741 ACATTGCCTGTTTTTGTTTGTATG 57.398 33.333 0.00 0.00 32.90 2.39
5945 6996 5.007528 ACATTGCCTGTTTTTGTTTGTATGC 59.992 36.000 0.00 0.00 32.90 3.14
5946 6997 3.462021 TGCCTGTTTTTGTTTGTATGCC 58.538 40.909 0.00 0.00 0.00 4.40
5947 6998 3.133721 TGCCTGTTTTTGTTTGTATGCCT 59.866 39.130 0.00 0.00 0.00 4.75
5948 6999 4.126437 GCCTGTTTTTGTTTGTATGCCTT 58.874 39.130 0.00 0.00 0.00 4.35
5949 7000 4.574421 GCCTGTTTTTGTTTGTATGCCTTT 59.426 37.500 0.00 0.00 0.00 3.11
5950 7001 5.065859 GCCTGTTTTTGTTTGTATGCCTTTT 59.934 36.000 0.00 0.00 0.00 2.27
5951 7002 6.404184 GCCTGTTTTTGTTTGTATGCCTTTTT 60.404 34.615 0.00 0.00 0.00 1.94
5952 7003 7.201652 GCCTGTTTTTGTTTGTATGCCTTTTTA 60.202 33.333 0.00 0.00 0.00 1.52
5953 7004 8.334632 CCTGTTTTTGTTTGTATGCCTTTTTAG 58.665 33.333 0.00 0.00 0.00 1.85
5954 7005 7.689299 TGTTTTTGTTTGTATGCCTTTTTAGC 58.311 30.769 0.00 0.00 0.00 3.09
5955 7006 7.550906 TGTTTTTGTTTGTATGCCTTTTTAGCT 59.449 29.630 0.00 0.00 0.00 3.32
5956 7007 8.394877 GTTTTTGTTTGTATGCCTTTTTAGCTT 58.605 29.630 0.00 0.00 0.00 3.74
5957 7008 8.499403 TTTTGTTTGTATGCCTTTTTAGCTTT 57.501 26.923 0.00 0.00 0.00 3.51
5958 7009 7.707774 TTGTTTGTATGCCTTTTTAGCTTTC 57.292 32.000 0.00 0.00 0.00 2.62
5959 7010 5.918011 TGTTTGTATGCCTTTTTAGCTTTCG 59.082 36.000 0.00 0.00 0.00 3.46
5960 7011 5.950758 TTGTATGCCTTTTTAGCTTTCGA 57.049 34.783 0.00 0.00 0.00 3.71
5961 7012 6.509418 TTGTATGCCTTTTTAGCTTTCGAT 57.491 33.333 0.00 0.00 0.00 3.59
5962 7013 6.509418 TGTATGCCTTTTTAGCTTTCGATT 57.491 33.333 0.00 0.00 0.00 3.34
5963 7014 6.919721 TGTATGCCTTTTTAGCTTTCGATTT 58.080 32.000 0.00 0.00 0.00 2.17
5964 7015 7.375053 TGTATGCCTTTTTAGCTTTCGATTTT 58.625 30.769 0.00 0.00 0.00 1.82
5965 7016 7.870445 TGTATGCCTTTTTAGCTTTCGATTTTT 59.130 29.630 0.00 0.00 0.00 1.94
6036 7087 8.657074 ACACGCAAATACTATACAATATGTGT 57.343 30.769 0.00 0.00 44.82 3.72
6037 7088 8.918175 CACGCAAATACTATACAATATGTGTG 57.082 34.615 0.00 0.00 41.89 3.82
6038 7089 8.547894 CACGCAAATACTATACAATATGTGTGT 58.452 33.333 7.69 0.00 39.33 3.72
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
580 678 0.451383 GTTTGGCAGCGATGTATGCA 59.549 50.000 1.22 0.00 44.37 3.96
612 710 2.232452 AGTGTAGACATGCTGAGTCCAC 59.768 50.000 0.00 0.00 36.68 4.02
644 742 4.531339 GGACCTACCCTAGTTGTTTCTCTT 59.469 45.833 0.00 0.00 0.00 2.85
649 747 5.095809 TGTATGGACCTACCCTAGTTGTTT 58.904 41.667 0.00 0.00 38.00 2.83
660 760 4.682778 TTGGTAGCATGTATGGACCTAC 57.317 45.455 0.00 0.00 0.00 3.18
694 794 3.164269 CATCTACAGCCGGGCCCT 61.164 66.667 22.43 2.17 0.00 5.19
695 795 4.937431 GCATCTACAGCCGGGCCC 62.937 72.222 17.02 13.57 0.00 5.80
697 797 2.280457 GAGCATCTACAGCCGGGC 60.280 66.667 12.11 12.11 0.00 6.13
824 924 2.691779 GGGGAGTCCGGGAGAGAGA 61.692 68.421 0.00 0.00 0.00 3.10
825 925 2.123640 GGGGAGTCCGGGAGAGAG 60.124 72.222 0.00 0.00 0.00 3.20
859 959 4.124351 TGGCCGACCGCGAGTAAG 62.124 66.667 8.23 1.78 40.82 2.34
860 960 4.124351 CTGGCCGACCGCGAGTAA 62.124 66.667 8.23 0.00 38.44 2.24
1042 1159 1.420138 GGAAGGCGGGAAGGATTGATA 59.580 52.381 0.00 0.00 0.00 2.15
1078 1195 0.385849 CAGAAACAAGAATGCGCGCA 60.386 50.000 38.27 38.27 0.00 6.09
1478 1595 1.531149 CGAAGATTTGACCTTGTGCGT 59.469 47.619 0.00 0.00 0.00 5.24
1520 1637 1.303898 TCCCATCCATGGCAAAGGTA 58.696 50.000 6.96 0.00 46.70 3.08
1541 1664 3.005554 CGTGGATATTCATGGCTGATCC 58.994 50.000 0.00 8.89 31.37 3.36
1542 1665 3.930336 TCGTGGATATTCATGGCTGATC 58.070 45.455 3.28 0.00 0.00 2.92
1543 1666 4.564782 ATCGTGGATATTCATGGCTGAT 57.435 40.909 3.28 0.00 0.00 2.90
1544 1667 4.318332 GAATCGTGGATATTCATGGCTGA 58.682 43.478 3.28 0.00 34.21 4.26
1631 1760 0.393132 TGCAGTGTGAAACGGAACCA 60.393 50.000 0.00 0.00 42.39 3.67
1635 1764 4.418013 CAATAATGCAGTGTGAAACGGA 57.582 40.909 0.00 0.00 42.39 4.69
1954 2083 1.302192 GGACGCAAGCAACCAGGTA 60.302 57.895 0.00 0.00 45.62 3.08
2064 2205 5.538118 TGCACATTATTATCACCTACTCCG 58.462 41.667 0.00 0.00 0.00 4.63
2140 2281 8.817100 CGACATGATACTAAAATCTTTAGTGCA 58.183 33.333 17.90 15.69 36.67 4.57
2255 2396 5.865552 CCCATGTGCTTCTGTAAATTTTCAG 59.134 40.000 16.36 16.36 0.00 3.02
2268 2409 1.885871 GGCAAGACCCATGTGCTTC 59.114 57.895 5.36 0.00 38.36 3.86
2294 2435 2.606795 GCATCCGTTTGCTGCAACTAAA 60.607 45.455 15.72 0.00 39.57 1.85
2380 2521 8.782339 AAATTGGCATTAAAGAATCTTCCTTG 57.218 30.769 0.00 0.00 0.00 3.61
2515 2657 1.817099 CCTTGGCTTGGCTCGCTAG 60.817 63.158 0.00 0.00 0.00 3.42
2516 2658 1.626356 ATCCTTGGCTTGGCTCGCTA 61.626 55.000 0.00 0.00 0.00 4.26
2574 2722 4.321230 CCACCATTTTGTTTAGAGTCTGCC 60.321 45.833 1.86 0.00 0.00 4.85
2698 3105 4.946157 ACAAAGTTGGAGAGCCATAAGATG 59.054 41.667 0.00 0.00 45.46 2.90
2699 3106 5.184892 ACAAAGTTGGAGAGCCATAAGAT 57.815 39.130 0.00 0.00 45.46 2.40
2700 3107 4.640771 ACAAAGTTGGAGAGCCATAAGA 57.359 40.909 0.00 0.00 45.46 2.10
2726 3133 0.612744 TGACTTGACGGCATGGATGA 59.387 50.000 9.23 0.00 0.00 2.92
2759 3166 8.871686 ATCAAAGTATGCTTTCGAAAAGTTTT 57.128 26.923 12.41 0.00 42.54 2.43
2786 3193 2.005451 CTCCGGCTCTCAAATCACAAG 58.995 52.381 0.00 0.00 0.00 3.16
2793 3200 1.338107 TTCACTCTCCGGCTCTCAAA 58.662 50.000 0.00 0.00 0.00 2.69
2800 3207 1.078143 ATGCCTTTCACTCTCCGGC 60.078 57.895 0.00 0.00 41.06 6.13
2819 3226 0.173481 TGAGTGCTGACTGGCGTATC 59.827 55.000 0.00 0.00 30.16 2.24
2824 3231 0.605589 ACTAGTGAGTGCTGACTGGC 59.394 55.000 0.00 0.00 33.41 4.85
2912 3319 2.504367 TGCCCTCTTGCTTCTTTACAC 58.496 47.619 0.00 0.00 0.00 2.90
2945 3352 0.588252 CATTAATTCCAGCGCCGGAG 59.412 55.000 13.02 1.55 36.12 4.63
2946 3353 0.179234 TCATTAATTCCAGCGCCGGA 59.821 50.000 8.69 8.69 0.00 5.14
2947 3354 1.002468 CTTCATTAATTCCAGCGCCGG 60.002 52.381 2.25 2.25 0.00 6.13
2948 3355 1.670811 ACTTCATTAATTCCAGCGCCG 59.329 47.619 2.29 0.00 0.00 6.46
2949 3356 2.682856 TGACTTCATTAATTCCAGCGCC 59.317 45.455 2.29 0.00 0.00 6.53
2950 3357 3.126858 TGTGACTTCATTAATTCCAGCGC 59.873 43.478 0.00 0.00 0.00 5.92
2954 3361 6.947733 ACAGGAATGTGACTTCATTAATTCCA 59.052 34.615 21.46 1.77 41.09 3.53
2955 3362 7.337942 AGACAGGAATGTGACTTCATTAATTCC 59.662 37.037 16.31 16.31 40.12 3.01
2969 3376 1.662629 GCATCGACAGACAGGAATGTG 59.337 52.381 0.00 0.00 0.00 3.21
2970 3377 1.276138 TGCATCGACAGACAGGAATGT 59.724 47.619 0.00 0.00 0.00 2.71
3156 3563 1.071699 ACGTTAAGAAGGCCAAGCTGA 59.928 47.619 5.01 0.00 0.00 4.26
3182 3589 6.430000 CCATCTGATCTGAATGAACATGCATA 59.570 38.462 6.37 0.00 0.00 3.14
3184 3591 4.578928 CCATCTGATCTGAATGAACATGCA 59.421 41.667 6.37 0.00 0.00 3.96
3397 4332 5.072193 TGGACATATATGCATTCTGTGGAGT 59.928 40.000 12.79 0.00 0.00 3.85
3520 4455 4.837896 AACAGAAGAGCTAAAGCAAACC 57.162 40.909 4.54 0.00 45.16 3.27
3578 4555 4.227300 ACAAAGAATATACTGGTGGGCAGA 59.773 41.667 0.00 0.00 0.00 4.26
3599 4576 8.654997 TCCCTTTTGAATGATCCATTTTTAACA 58.345 29.630 0.00 0.00 33.90 2.41
3952 4930 4.085733 CCCAGGTCACAAATGGTCATTTA 58.914 43.478 8.40 0.00 38.84 1.40
3982 4960 5.914898 AATTGTAGCACTACCATTTTCCC 57.085 39.130 5.40 0.00 35.26 3.97
3983 4961 8.520351 ACTTAAATTGTAGCACTACCATTTTCC 58.480 33.333 19.14 0.00 40.04 3.13
3984 4962 9.908152 AACTTAAATTGTAGCACTACCATTTTC 57.092 29.630 19.14 0.00 40.04 2.29
3985 4963 9.908152 GAACTTAAATTGTAGCACTACCATTTT 57.092 29.630 19.14 12.10 40.04 1.82
3986 4964 8.520351 GGAACTTAAATTGTAGCACTACCATTT 58.480 33.333 18.39 18.39 41.38 2.32
3987 4965 7.668052 TGGAACTTAAATTGTAGCACTACCATT 59.332 33.333 5.40 3.68 34.22 3.16
3988 4966 7.172342 TGGAACTTAAATTGTAGCACTACCAT 58.828 34.615 5.40 0.00 35.26 3.55
3989 4967 6.535540 TGGAACTTAAATTGTAGCACTACCA 58.464 36.000 5.40 0.00 35.26 3.25
3990 4968 7.443259 TTGGAACTTAAATTGTAGCACTACC 57.557 36.000 5.40 0.00 35.26 3.18
3991 4969 9.177304 GTTTTGGAACTTAAATTGTAGCACTAC 57.823 33.333 0.70 0.70 33.59 2.73
3992 4970 8.904834 TGTTTTGGAACTTAAATTGTAGCACTA 58.095 29.630 0.00 0.00 36.70 2.74
3993 4971 7.777095 TGTTTTGGAACTTAAATTGTAGCACT 58.223 30.769 0.00 0.00 36.70 4.40
3994 4972 7.995463 TGTTTTGGAACTTAAATTGTAGCAC 57.005 32.000 0.00 0.00 36.70 4.40
3995 4973 9.906660 CTATGTTTTGGAACTTAAATTGTAGCA 57.093 29.630 0.00 0.00 36.70 3.49
4050 5054 4.845225 TGATGGTTTAGGTGTACCCACTTA 59.155 41.667 0.00 0.00 41.53 2.24
4123 5127 2.290260 ACAGCTTACATAACTGCCAGCA 60.290 45.455 0.00 0.00 34.56 4.41
4168 5172 1.334869 CGGCTTGCCATTACCAGATTC 59.665 52.381 12.45 0.00 0.00 2.52
4182 5186 0.575390 CCGACGCTATAAACGGCTTG 59.425 55.000 0.00 0.00 38.98 4.01
4221 5226 1.952296 CCAGATTTGCTCATACCCTGC 59.048 52.381 0.00 0.00 0.00 4.85
4222 5227 3.287867 ACCAGATTTGCTCATACCCTG 57.712 47.619 0.00 0.00 0.00 4.45
4389 5396 2.860735 GAGTGCAGGTATAGAAACAGCG 59.139 50.000 0.00 0.00 0.00 5.18
4451 5458 2.667473 AGTACAGTTACGCATGTCCC 57.333 50.000 0.00 0.00 32.93 4.46
4486 5493 2.424956 CCTTCTTTCTTGGCATGGTAGC 59.575 50.000 0.00 0.00 0.00 3.58
4531 5538 1.556564 GCACATACACTCATACGCGT 58.443 50.000 19.17 19.17 0.00 6.01
4583 5594 5.258456 TCAAGATACGGTCTATCGCTTTT 57.742 39.130 0.00 0.00 35.67 2.27
4584 5595 4.913335 TCAAGATACGGTCTATCGCTTT 57.087 40.909 0.00 0.00 35.67 3.51
4592 5603 2.567615 ACCAAGCTTCAAGATACGGTCT 59.432 45.455 0.00 0.00 39.43 3.85
4864 5876 1.973812 GGGGCAGAAGCAGTTGACC 60.974 63.158 0.00 0.00 44.61 4.02
5093 6117 1.227380 AGCAGGCGCCTAGAATTCG 60.227 57.895 32.30 16.53 39.83 3.34
5160 6185 0.741326 TAGGAGCAGCGAACTAGCAG 59.259 55.000 0.00 0.00 40.15 4.24
5169 6197 0.818296 ACACTTAGGTAGGAGCAGCG 59.182 55.000 0.00 0.00 0.00 5.18
5232 6260 1.491670 CATACCGCGTGAAGATCCAG 58.508 55.000 4.92 0.00 0.00 3.86
5241 6269 1.651987 ACTTGAATCCATACCGCGTG 58.348 50.000 4.92 0.00 0.00 5.34
5244 6272 2.833794 TGCTACTTGAATCCATACCGC 58.166 47.619 0.00 0.00 0.00 5.68
5248 6276 6.429078 GCAATGAGATGCTACTTGAATCCATA 59.571 38.462 0.00 0.00 43.06 2.74
5264 6292 0.181114 TGGCGGCTAAGCAATGAGAT 59.819 50.000 11.43 0.00 39.27 2.75
5281 6309 1.204704 TGTGCTCTACAATCTCGGTGG 59.795 52.381 0.00 0.00 36.06 4.61
5286 6322 4.172505 CTCACACTGTGCTCTACAATCTC 58.827 47.826 7.90 0.00 39.20 2.75
5298 6334 1.002430 ACCATACTGGCTCACACTGTG 59.998 52.381 6.19 6.19 42.67 3.66
5311 6347 1.971357 CCCGGAAGATAGCACCATACT 59.029 52.381 0.73 0.00 0.00 2.12
5314 6350 1.507140 TTCCCGGAAGATAGCACCAT 58.493 50.000 0.73 0.00 0.00 3.55
5316 6352 2.158813 TGATTTCCCGGAAGATAGCACC 60.159 50.000 0.73 0.00 0.00 5.01
5321 6357 3.454447 TCTGCTTGATTTCCCGGAAGATA 59.546 43.478 0.73 0.00 0.00 1.98
5358 6402 1.774254 AGAGGGGACATTGTCACACAA 59.226 47.619 20.17 0.00 42.95 3.33
5359 6403 1.434188 AGAGGGGACATTGTCACACA 58.566 50.000 20.17 0.00 37.77 3.72
5365 6411 1.561542 CTGGCTAAGAGGGGACATTGT 59.438 52.381 0.00 0.00 0.00 2.71
5369 6415 1.500474 CATCTGGCTAAGAGGGGACA 58.500 55.000 0.00 0.00 38.67 4.02
5380 6426 3.117398 TCCAAATTATGCTCCATCTGGCT 60.117 43.478 0.00 0.00 34.44 4.75
5392 6438 9.174166 TGCTATGAGATGATCATCCAAATTATG 57.826 33.333 28.23 14.03 46.01 1.90
5410 6456 0.179034 GGCAAGTCCCCTGCTATGAG 60.179 60.000 0.00 0.00 0.00 2.90
5423 6469 0.771127 TACTTCTGGCCAAGGCAAGT 59.229 50.000 14.91 15.76 42.55 3.16
5425 6471 0.038166 CCTACTTCTGGCCAAGGCAA 59.962 55.000 7.01 0.00 44.11 4.52
5426 6472 1.685224 CCTACTTCTGGCCAAGGCA 59.315 57.895 7.01 0.13 44.11 4.75
5427 6473 1.077429 CCCTACTTCTGGCCAAGGC 60.077 63.158 14.14 1.52 41.06 4.35
5428 6474 1.077429 GCCCTACTTCTGGCCAAGG 60.077 63.158 12.82 12.82 41.97 3.61
5429 6475 4.645809 GCCCTACTTCTGGCCAAG 57.354 61.111 7.01 4.55 41.97 3.61
5434 6480 3.209410 GAACATGATGCCCTACTTCTGG 58.791 50.000 0.00 0.00 0.00 3.86
5435 6481 2.868583 CGAACATGATGCCCTACTTCTG 59.131 50.000 0.00 0.00 0.00 3.02
5437 6483 1.599542 GCGAACATGATGCCCTACTTC 59.400 52.381 0.00 0.00 0.00 3.01
5469 6515 2.034685 TGGAATACAAGCGATCTCCGAG 59.965 50.000 0.00 0.00 41.76 4.63
5470 6516 2.028876 TGGAATACAAGCGATCTCCGA 58.971 47.619 0.00 0.00 41.76 4.55
5515 6563 5.227908 ACGATCAGTACAACATCGAAACTT 58.772 37.500 21.17 3.07 41.61 2.66
5538 6586 2.287308 GCCAGCACGAACACAAACATAA 60.287 45.455 0.00 0.00 0.00 1.90
5556 6606 3.378112 GCATAAACTGTATTGCTCAGCCA 59.622 43.478 0.00 0.00 36.50 4.75
5557 6607 3.378112 TGCATAAACTGTATTGCTCAGCC 59.622 43.478 0.00 0.00 36.50 4.85
5558 6608 4.621068 TGCATAAACTGTATTGCTCAGC 57.379 40.909 0.00 0.00 36.50 4.26
5568 6618 8.151141 CTTGATCTACATCATGCATAAACTGT 57.849 34.615 0.00 3.46 38.89 3.55
5620 6670 5.847304 TCAGGACACTTGCATATAGCTAAG 58.153 41.667 0.00 0.00 45.94 2.18
5629 6679 5.534207 TTCAAAAATCAGGACACTTGCAT 57.466 34.783 0.00 0.00 0.00 3.96
5637 6687 6.368791 GCTTACCCAATTTCAAAAATCAGGAC 59.631 38.462 7.35 0.00 0.00 3.85
5638 6688 6.042552 TGCTTACCCAATTTCAAAAATCAGGA 59.957 34.615 7.35 0.00 0.00 3.86
5649 6699 3.694566 CCCACTACTGCTTACCCAATTTC 59.305 47.826 0.00 0.00 0.00 2.17
5652 6702 1.564348 CCCCACTACTGCTTACCCAAT 59.436 52.381 0.00 0.00 0.00 3.16
5654 6704 1.559065 GCCCCACTACTGCTTACCCA 61.559 60.000 0.00 0.00 0.00 4.51
5655 6705 1.223763 GCCCCACTACTGCTTACCC 59.776 63.158 0.00 0.00 0.00 3.69
5657 6707 1.271163 TGTTGCCCCACTACTGCTTAC 60.271 52.381 0.00 0.00 0.00 2.34
5666 6716 1.688197 CTCATGTTTTGTTGCCCCACT 59.312 47.619 0.00 0.00 0.00 4.00
5677 6728 3.778265 ACTGGCCCATTACTCATGTTTT 58.222 40.909 0.00 0.00 0.00 2.43
5681 6732 4.097892 GGTAAAACTGGCCCATTACTCATG 59.902 45.833 0.00 0.00 0.00 3.07
5731 6782 6.334989 CAGCCAATGCAAAATCTTCTGAATA 58.665 36.000 0.00 0.00 41.13 1.75
5764 6815 0.106868 CAGCATGAATCTCTGGGCCA 60.107 55.000 5.85 5.85 39.69 5.36
5782 6833 9.554724 GCGATGAAAGAACATAATAAAAGAACA 57.445 29.630 0.00 0.00 0.00 3.18
5783 6834 9.774742 AGCGATGAAAGAACATAATAAAAGAAC 57.225 29.630 0.00 0.00 0.00 3.01
5785 6836 9.988350 GAAGCGATGAAAGAACATAATAAAAGA 57.012 29.630 0.00 0.00 0.00 2.52
5786 6837 9.994432 AGAAGCGATGAAAGAACATAATAAAAG 57.006 29.630 0.00 0.00 0.00 2.27
5790 6841 9.817809 ACTAAGAAGCGATGAAAGAACATAATA 57.182 29.630 0.00 0.00 0.00 0.98
5791 6842 8.723942 ACTAAGAAGCGATGAAAGAACATAAT 57.276 30.769 0.00 0.00 0.00 1.28
5792 6843 8.547967 AACTAAGAAGCGATGAAAGAACATAA 57.452 30.769 0.00 0.00 0.00 1.90
5793 6844 9.302345 CTAACTAAGAAGCGATGAAAGAACATA 57.698 33.333 0.00 0.00 0.00 2.29
5794 6845 7.819900 ACTAACTAAGAAGCGATGAAAGAACAT 59.180 33.333 0.00 0.00 0.00 2.71
5795 6846 7.152645 ACTAACTAAGAAGCGATGAAAGAACA 58.847 34.615 0.00 0.00 0.00 3.18
5796 6847 7.583860 ACTAACTAAGAAGCGATGAAAGAAC 57.416 36.000 0.00 0.00 0.00 3.01
5797 6848 8.603242 AAACTAACTAAGAAGCGATGAAAGAA 57.397 30.769 0.00 0.00 0.00 2.52
5798 6849 8.603242 AAAACTAACTAAGAAGCGATGAAAGA 57.397 30.769 0.00 0.00 0.00 2.52
5799 6850 9.107367 CAAAAACTAACTAAGAAGCGATGAAAG 57.893 33.333 0.00 0.00 0.00 2.62
5800 6851 8.832521 TCAAAAACTAACTAAGAAGCGATGAAA 58.167 29.630 0.00 0.00 0.00 2.69
5801 6852 8.280497 GTCAAAAACTAACTAAGAAGCGATGAA 58.720 33.333 0.00 0.00 0.00 2.57
5802 6853 7.656137 AGTCAAAAACTAACTAAGAAGCGATGA 59.344 33.333 0.00 0.00 36.07 2.92
5803 6854 7.797819 AGTCAAAAACTAACTAAGAAGCGATG 58.202 34.615 0.00 0.00 36.07 3.84
5804 6855 7.964604 AGTCAAAAACTAACTAAGAAGCGAT 57.035 32.000 0.00 0.00 36.07 4.58
5805 6856 7.627340 CAAGTCAAAAACTAACTAAGAAGCGA 58.373 34.615 0.00 0.00 37.17 4.93
5806 6857 6.357240 GCAAGTCAAAAACTAACTAAGAAGCG 59.643 38.462 0.00 0.00 37.17 4.68
5807 6858 7.418408 AGCAAGTCAAAAACTAACTAAGAAGC 58.582 34.615 0.00 0.00 37.17 3.86
5808 6859 9.226345 CAAGCAAGTCAAAAACTAACTAAGAAG 57.774 33.333 0.00 0.00 37.17 2.85
5809 6860 8.736244 ACAAGCAAGTCAAAAACTAACTAAGAA 58.264 29.630 0.00 0.00 37.17 2.52
5810 6861 8.276252 ACAAGCAAGTCAAAAACTAACTAAGA 57.724 30.769 0.00 0.00 37.17 2.10
5811 6862 8.911247 AACAAGCAAGTCAAAAACTAACTAAG 57.089 30.769 0.00 0.00 37.17 2.18
5813 6864 9.997482 CTAAACAAGCAAGTCAAAAACTAACTA 57.003 29.630 0.00 0.00 37.17 2.24
5814 6865 7.973944 CCTAAACAAGCAAGTCAAAAACTAACT 59.026 33.333 0.00 0.00 37.17 2.24
5815 6866 7.222031 CCCTAAACAAGCAAGTCAAAAACTAAC 59.778 37.037 0.00 0.00 37.17 2.34
5816 6867 7.262048 CCCTAAACAAGCAAGTCAAAAACTAA 58.738 34.615 0.00 0.00 37.17 2.24
5817 6868 6.681865 GCCCTAAACAAGCAAGTCAAAAACTA 60.682 38.462 0.00 0.00 37.17 2.24
5818 6869 5.660460 CCCTAAACAAGCAAGTCAAAAACT 58.340 37.500 0.00 0.00 41.10 2.66
5819 6870 4.270084 GCCCTAAACAAGCAAGTCAAAAAC 59.730 41.667 0.00 0.00 0.00 2.43
5820 6871 4.081420 TGCCCTAAACAAGCAAGTCAAAAA 60.081 37.500 0.00 0.00 32.56 1.94
5821 6872 3.449018 TGCCCTAAACAAGCAAGTCAAAA 59.551 39.130 0.00 0.00 32.56 2.44
5822 6873 3.027412 TGCCCTAAACAAGCAAGTCAAA 58.973 40.909 0.00 0.00 32.56 2.69
5823 6874 2.660572 TGCCCTAAACAAGCAAGTCAA 58.339 42.857 0.00 0.00 32.56 3.18
5824 6875 2.356665 TGCCCTAAACAAGCAAGTCA 57.643 45.000 0.00 0.00 32.56 3.41
5828 6879 3.027412 TCAACTTGCCCTAAACAAGCAA 58.973 40.909 3.52 0.00 46.81 3.91
5829 6880 2.660572 TCAACTTGCCCTAAACAAGCA 58.339 42.857 3.52 0.00 46.81 3.91
5830 6881 3.942130 ATCAACTTGCCCTAAACAAGC 57.058 42.857 3.52 0.00 46.81 4.01
5853 6904 7.992008 ACGAGTCAAAATTCAACCTAGAAAAA 58.008 30.769 0.00 0.00 0.00 1.94
5854 6905 7.497909 AGACGAGTCAAAATTCAACCTAGAAAA 59.502 33.333 5.99 0.00 0.00 2.29
5855 6906 6.990349 AGACGAGTCAAAATTCAACCTAGAAA 59.010 34.615 5.99 0.00 0.00 2.52
5856 6907 6.522054 AGACGAGTCAAAATTCAACCTAGAA 58.478 36.000 5.99 0.00 0.00 2.10
5857 6908 6.015350 AGAGACGAGTCAAAATTCAACCTAGA 60.015 38.462 5.99 0.00 0.00 2.43
5858 6909 6.090088 CAGAGACGAGTCAAAATTCAACCTAG 59.910 42.308 5.99 0.00 0.00 3.02
5859 6910 5.926542 CAGAGACGAGTCAAAATTCAACCTA 59.073 40.000 5.99 0.00 0.00 3.08
5860 6911 4.752101 CAGAGACGAGTCAAAATTCAACCT 59.248 41.667 5.99 0.00 0.00 3.50
5861 6912 4.511826 ACAGAGACGAGTCAAAATTCAACC 59.488 41.667 5.99 0.00 0.00 3.77
5862 6913 5.659048 ACAGAGACGAGTCAAAATTCAAC 57.341 39.130 5.99 0.00 0.00 3.18
5863 6914 6.423905 CCTAACAGAGACGAGTCAAAATTCAA 59.576 38.462 5.99 0.00 0.00 2.69
5864 6915 5.926542 CCTAACAGAGACGAGTCAAAATTCA 59.073 40.000 5.99 0.00 0.00 2.57
5865 6916 5.348997 CCCTAACAGAGACGAGTCAAAATTC 59.651 44.000 5.99 0.00 0.00 2.17
5866 6917 5.238583 CCCTAACAGAGACGAGTCAAAATT 58.761 41.667 5.99 0.00 0.00 1.82
5867 6918 4.322801 CCCCTAACAGAGACGAGTCAAAAT 60.323 45.833 5.99 0.00 0.00 1.82
5868 6919 3.006537 CCCCTAACAGAGACGAGTCAAAA 59.993 47.826 5.99 0.00 0.00 2.44
5869 6920 2.561419 CCCCTAACAGAGACGAGTCAAA 59.439 50.000 5.99 0.00 0.00 2.69
5870 6921 2.168496 CCCCTAACAGAGACGAGTCAA 58.832 52.381 5.99 0.00 0.00 3.18
5871 6922 1.075050 ACCCCTAACAGAGACGAGTCA 59.925 52.381 5.99 0.00 0.00 3.41
5872 6923 1.836802 ACCCCTAACAGAGACGAGTC 58.163 55.000 0.00 0.00 0.00 3.36
5873 6924 2.305858 AACCCCTAACAGAGACGAGT 57.694 50.000 0.00 0.00 0.00 4.18
5874 6925 3.354467 ACTAACCCCTAACAGAGACGAG 58.646 50.000 0.00 0.00 0.00 4.18
5875 6926 3.350833 GACTAACCCCTAACAGAGACGA 58.649 50.000 0.00 0.00 0.00 4.20
5876 6927 2.097142 CGACTAACCCCTAACAGAGACG 59.903 54.545 0.00 0.00 0.00 4.18
5877 6928 3.350833 TCGACTAACCCCTAACAGAGAC 58.649 50.000 0.00 0.00 0.00 3.36
5878 6929 3.726557 TCGACTAACCCCTAACAGAGA 57.273 47.619 0.00 0.00 0.00 3.10
5879 6930 5.340439 AAATCGACTAACCCCTAACAGAG 57.660 43.478 0.00 0.00 0.00 3.35
5880 6931 5.750352 AAAATCGACTAACCCCTAACAGA 57.250 39.130 0.00 0.00 0.00 3.41
5881 6932 5.063060 CGAAAAATCGACTAACCCCTAACAG 59.937 44.000 0.00 0.00 34.64 3.16
5882 6933 4.931002 CGAAAAATCGACTAACCCCTAACA 59.069 41.667 0.00 0.00 34.64 2.41
5883 6934 4.201753 GCGAAAAATCGACTAACCCCTAAC 60.202 45.833 1.91 0.00 34.64 2.34
5884 6935 3.934579 GCGAAAAATCGACTAACCCCTAA 59.065 43.478 1.91 0.00 34.64 2.69
5885 6936 3.196254 AGCGAAAAATCGACTAACCCCTA 59.804 43.478 1.91 0.00 34.64 3.53
5886 6937 2.027469 AGCGAAAAATCGACTAACCCCT 60.027 45.455 1.91 0.00 34.64 4.79
5887 6938 2.353323 AGCGAAAAATCGACTAACCCC 58.647 47.619 1.91 0.00 34.64 4.95
5888 6939 3.434299 TCAAGCGAAAAATCGACTAACCC 59.566 43.478 1.91 0.00 34.64 4.11
5889 6940 4.657075 TCAAGCGAAAAATCGACTAACC 57.343 40.909 1.91 0.00 34.64 2.85
5890 6941 5.338822 GGTTTCAAGCGAAAAATCGACTAAC 59.661 40.000 1.91 1.77 42.66 2.34
5891 6942 5.445845 GGTTTCAAGCGAAAAATCGACTAA 58.554 37.500 1.91 0.00 42.66 2.24
5892 6943 4.083696 GGGTTTCAAGCGAAAAATCGACTA 60.084 41.667 1.91 0.00 42.66 2.59
5893 6944 3.304458 GGGTTTCAAGCGAAAAATCGACT 60.304 43.478 1.91 0.00 42.66 4.18
5894 6945 2.977829 GGGTTTCAAGCGAAAAATCGAC 59.022 45.455 1.91 0.00 42.66 4.20
5895 6946 2.350007 CGGGTTTCAAGCGAAAAATCGA 60.350 45.455 1.91 0.00 42.66 3.59
5896 6947 1.976045 CGGGTTTCAAGCGAAAAATCG 59.024 47.619 0.00 0.00 42.66 3.34
5897 6948 3.007979 ACGGGTTTCAAGCGAAAAATC 57.992 42.857 0.00 0.00 42.66 2.17
5898 6949 3.446310 AACGGGTTTCAAGCGAAAAAT 57.554 38.095 0.00 0.00 42.66 1.82
5899 6950 2.943449 AACGGGTTTCAAGCGAAAAA 57.057 40.000 0.00 0.00 42.66 1.94
5900 6951 4.514441 TGTATAACGGGTTTCAAGCGAAAA 59.486 37.500 0.00 0.00 42.66 2.29
5901 6952 4.063689 TGTATAACGGGTTTCAAGCGAAA 58.936 39.130 0.00 0.00 38.83 3.46
5902 6953 3.661944 TGTATAACGGGTTTCAAGCGAA 58.338 40.909 0.00 0.00 0.00 4.70
5903 6954 3.316071 TGTATAACGGGTTTCAAGCGA 57.684 42.857 0.00 0.00 0.00 4.93
5904 6955 4.339429 CAATGTATAACGGGTTTCAAGCG 58.661 43.478 0.00 0.00 0.00 4.68
5905 6956 4.102649 GCAATGTATAACGGGTTTCAAGC 58.897 43.478 0.00 0.00 0.00 4.01
5906 6957 4.398044 AGGCAATGTATAACGGGTTTCAAG 59.602 41.667 0.00 0.00 0.00 3.02
5907 6958 4.156922 CAGGCAATGTATAACGGGTTTCAA 59.843 41.667 0.00 0.00 0.00 2.69
5908 6959 3.692101 CAGGCAATGTATAACGGGTTTCA 59.308 43.478 0.00 0.00 0.00 2.69
5909 6960 3.692593 ACAGGCAATGTATAACGGGTTTC 59.307 43.478 0.00 0.00 41.60 2.78
5910 6961 3.692690 ACAGGCAATGTATAACGGGTTT 58.307 40.909 0.00 0.00 41.60 3.27
5911 6962 3.359695 ACAGGCAATGTATAACGGGTT 57.640 42.857 0.00 0.00 41.60 4.11
5912 6963 3.359695 AACAGGCAATGTATAACGGGT 57.640 42.857 0.00 0.00 43.00 5.28
5913 6964 4.712122 AAAACAGGCAATGTATAACGGG 57.288 40.909 0.00 0.00 43.00 5.28
5914 6965 5.465935 ACAAAAACAGGCAATGTATAACGG 58.534 37.500 0.00 0.00 43.00 4.44
5915 6966 7.043059 ACAAACAAAAACAGGCAATGTATAACG 60.043 33.333 0.00 0.00 43.00 3.18
5916 6967 8.137210 ACAAACAAAAACAGGCAATGTATAAC 57.863 30.769 0.00 0.00 43.00 1.89
5917 6968 9.988815 ATACAAACAAAAACAGGCAATGTATAA 57.011 25.926 0.00 0.00 43.00 0.98
5918 6969 9.416794 CATACAAACAAAAACAGGCAATGTATA 57.583 29.630 0.00 0.00 43.00 1.47
5919 6970 7.095271 GCATACAAACAAAAACAGGCAATGTAT 60.095 33.333 0.00 0.00 43.00 2.29
5920 6971 6.201806 GCATACAAACAAAAACAGGCAATGTA 59.798 34.615 0.00 0.00 43.00 2.29
5921 6972 5.007528 GCATACAAACAAAAACAGGCAATGT 59.992 36.000 0.00 0.00 46.97 2.71
5922 6973 5.442402 GCATACAAACAAAAACAGGCAATG 58.558 37.500 0.00 0.00 0.00 2.82
5923 6974 4.514816 GGCATACAAACAAAAACAGGCAAT 59.485 37.500 0.00 0.00 0.00 3.56
5924 6975 3.873952 GGCATACAAACAAAAACAGGCAA 59.126 39.130 0.00 0.00 0.00 4.52
5925 6976 3.133721 AGGCATACAAACAAAAACAGGCA 59.866 39.130 0.00 0.00 0.00 4.75
5926 6977 3.727726 AGGCATACAAACAAAAACAGGC 58.272 40.909 0.00 0.00 0.00 4.85
5927 6978 6.676237 AAAAGGCATACAAACAAAAACAGG 57.324 33.333 0.00 0.00 0.00 4.00
5928 6979 7.850492 GCTAAAAAGGCATACAAACAAAAACAG 59.150 33.333 0.00 0.00 0.00 3.16
5929 6980 7.550906 AGCTAAAAAGGCATACAAACAAAAACA 59.449 29.630 0.00 0.00 0.00 2.83
5930 6981 7.915508 AGCTAAAAAGGCATACAAACAAAAAC 58.084 30.769 0.00 0.00 0.00 2.43
5931 6982 8.499403 AAGCTAAAAAGGCATACAAACAAAAA 57.501 26.923 0.00 0.00 0.00 1.94
5932 6983 8.499403 AAAGCTAAAAAGGCATACAAACAAAA 57.501 26.923 0.00 0.00 0.00 2.44
5933 6984 7.043059 CGAAAGCTAAAAAGGCATACAAACAAA 60.043 33.333 0.00 0.00 0.00 2.83
5934 6985 6.419413 CGAAAGCTAAAAAGGCATACAAACAA 59.581 34.615 0.00 0.00 0.00 2.83
5935 6986 5.918011 CGAAAGCTAAAAAGGCATACAAACA 59.082 36.000 0.00 0.00 0.00 2.83
5936 6987 6.146898 TCGAAAGCTAAAAAGGCATACAAAC 58.853 36.000 0.00 0.00 0.00 2.93
5937 6988 6.320494 TCGAAAGCTAAAAAGGCATACAAA 57.680 33.333 0.00 0.00 0.00 2.83
5938 6989 5.950758 TCGAAAGCTAAAAAGGCATACAA 57.049 34.783 0.00 0.00 0.00 2.41
5939 6990 6.509418 AATCGAAAGCTAAAAAGGCATACA 57.491 33.333 0.00 0.00 0.00 2.29
5940 6991 7.812309 AAAATCGAAAGCTAAAAAGGCATAC 57.188 32.000 0.00 0.00 0.00 2.39
6010 7061 9.752961 ACACATATTGTATAGTATTTGCGTGTA 57.247 29.630 0.00 0.00 36.32 2.90
6011 7062 8.547894 CACACATATTGTATAGTATTTGCGTGT 58.452 33.333 0.00 0.00 35.67 4.49
6012 7063 8.547894 ACACACATATTGTATAGTATTTGCGTG 58.452 33.333 0.00 0.00 35.67 5.34
6013 7064 8.657074 ACACACATATTGTATAGTATTTGCGT 57.343 30.769 0.00 0.00 35.67 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.