Multiple sequence alignment - TraesCS2B01G371100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G371100 chr2B 100.000 3858 0 0 1 3858 529254757 529258614 0.000000e+00 7125.0
1 TraesCS2B01G371100 chr2B 100.000 52 0 0 3482 3533 529258188 529258239 3.170000e-16 97.1
2 TraesCS2B01G371100 chr2A 91.700 2976 133 43 400 3305 593647755 593650686 0.000000e+00 4023.0
3 TraesCS2B01G371100 chr2A 91.471 340 22 4 13 346 593647413 593647751 9.770000e-126 460.0
4 TraesCS2B01G371100 chr2A 90.833 120 11 0 3364 3483 147171979 147171860 1.110000e-35 161.0
5 TraesCS2B01G371100 chr2D 91.724 1897 99 21 3 1859 449072725 449070847 0.000000e+00 2580.0
6 TraesCS2B01G371100 chr2D 93.865 1467 54 20 1884 3325 449070752 449069297 0.000000e+00 2178.0
7 TraesCS2B01G371100 chr2D 92.174 115 9 0 3363 3477 181237087 181237201 3.080000e-36 163.0
8 TraesCS2B01G371100 chr3D 86.448 701 46 23 915 1572 391258506 391259200 0.000000e+00 723.0
9 TraesCS2B01G371100 chr3D 87.296 307 34 4 3553 3858 612532450 612532148 2.850000e-91 346.0
10 TraesCS2B01G371100 chr3D 91.667 120 10 0 3364 3483 348084025 348084144 2.380000e-37 167.0
11 TraesCS2B01G371100 chr3D 80.263 152 25 3 505 656 570532351 570532497 4.080000e-20 110.0
12 TraesCS2B01G371100 chr3B 98.387 310 3 2 3550 3858 768743904 768744212 9.430000e-151 544.0
13 TraesCS2B01G371100 chr3B 81.308 107 12 7 3 105 166762898 166763000 3.200000e-11 80.5
14 TraesCS2B01G371100 chr7A 95.312 320 12 2 3539 3858 127998334 127998018 4.450000e-139 505.0
15 TraesCS2B01G371100 chr7A 90.076 131 11 2 3359 3487 544713308 544713438 6.630000e-38 169.0
16 TraesCS2B01G371100 chr7A 87.218 133 11 5 3544 3673 727893793 727893922 3.110000e-31 147.0
17 TraesCS2B01G371100 chr5D 93.631 314 17 3 3546 3858 412730739 412731050 2.100000e-127 466.0
18 TraesCS2B01G371100 chr5D 91.667 120 10 0 3364 3483 508719927 508720046 2.380000e-37 167.0
19 TraesCS2B01G371100 chr5B 85.852 311 34 8 3549 3858 482309241 482308940 4.810000e-84 322.0
20 TraesCS2B01G371100 chr5B 88.060 134 12 4 3352 3483 543225823 543225954 5.160000e-34 156.0
21 TraesCS2B01G371100 chr5B 83.333 96 9 6 1 93 691809975 691809884 8.880000e-12 82.4
22 TraesCS2B01G371100 chr5B 88.060 67 8 0 3482 3548 647467707 647467773 3.200000e-11 80.5
23 TraesCS2B01G371100 chr1B 87.234 282 32 4 3580 3858 57767017 57767297 6.220000e-83 318.0
24 TraesCS2B01G371100 chr6D 78.914 313 43 19 3549 3858 393645284 393644992 1.410000e-44 191.0
25 TraesCS2B01G371100 chr6A 95.041 121 6 0 3363 3483 447843116 447843236 1.410000e-44 191.0
26 TraesCS2B01G371100 chr4A 79.167 312 37 12 3548 3858 564954770 564954486 1.410000e-44 191.0
27 TraesCS2B01G371100 chr6B 95.000 120 6 0 3364 3483 678638660 678638779 5.090000e-44 189.0
28 TraesCS2B01G371100 chr6B 91.089 101 7 2 3549 3648 637938751 637938652 6.720000e-28 135.0
29 TraesCS2B01G371100 chr4B 93.103 116 5 3 3368 3483 645464823 645464935 2.380000e-37 167.0
30 TraesCS2B01G371100 chr4B 81.915 94 12 4 3 94 506903422 506903512 1.490000e-09 75.0
31 TraesCS2B01G371100 chr4D 89.024 82 4 4 1 82 43356699 43356623 3.170000e-16 97.1
32 TraesCS2B01G371100 chr7B 88.462 78 6 3 6 82 323197637 323197562 1.480000e-14 91.6
33 TraesCS2B01G371100 chr7B 86.250 80 8 2 3 82 523167653 523167577 2.470000e-12 84.2
34 TraesCS2B01G371100 chr7D 86.747 83 6 4 1 82 363549026 363548948 1.910000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G371100 chr2B 529254757 529258614 3857 False 3611.05 7125 100.0000 1 3858 2 chr2B.!!$F1 3857
1 TraesCS2B01G371100 chr2A 593647413 593650686 3273 False 2241.50 4023 91.5855 13 3305 2 chr2A.!!$F1 3292
2 TraesCS2B01G371100 chr2D 449069297 449072725 3428 True 2379.00 2580 92.7945 3 3325 2 chr2D.!!$R1 3322
3 TraesCS2B01G371100 chr3D 391258506 391259200 694 False 723.00 723 86.4480 915 1572 1 chr3D.!!$F2 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
588 619 0.035056 CCGGGAGCTCTTGGACATTT 60.035 55.0 14.64 0.0 0.00 2.32 F
680 713 0.736325 GATCCAACGGTCCAGACGTG 60.736 60.0 0.00 0.0 44.83 4.49 F
735 769 0.811281 GAAACTTTCCCATCCAGCCG 59.189 55.0 0.00 0.0 0.00 5.52 F
2071 2251 0.537188 GCTTACTGCAGACCAGCCTA 59.463 55.0 23.35 0.0 45.78 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1982 2149 0.251165 ACGCCAACCCAACTAATGCT 60.251 50.000 0.0 0.0 0.0 3.79 R
1995 2162 2.101582 ACATTTGCCAAGTAAACGCCAA 59.898 40.909 0.0 0.0 0.0 4.52 R
2586 2770 2.178580 TCCCAAATTCATCCCAACAGC 58.821 47.619 0.0 0.0 0.0 4.40 R
3744 3938 0.036732 TAGCCACAACAGCCAAGGAG 59.963 55.000 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 7.466804 AGTGATCCTGGGAACTTAATTTGTAA 58.533 34.615 0.00 0.00 0.00 2.41
68 70 9.877137 GGAACTTAATTTGTAAGGCAATTTTTG 57.123 29.630 0.00 0.00 36.89 2.44
83 85 8.620416 AGGCAATTTTTGGTTTTGTTTTCTATC 58.380 29.630 0.00 0.00 0.00 2.08
147 153 2.706071 GGGAGGGGGAGGTGATCT 59.294 66.667 0.00 0.00 0.00 2.75
186 193 2.232941 CGGTTGGGTGAGTGTGTAGTAT 59.767 50.000 0.00 0.00 0.00 2.12
203 210 4.471904 AGTATGTTTGCTCCGATCTCAA 57.528 40.909 0.00 0.00 0.00 3.02
227 234 7.707624 AGCCATCTCAATGTATTTTTCTTCA 57.292 32.000 0.00 0.00 0.00 3.02
276 283 9.738832 GACCATTAGAACTGATAGTCTAAAGTC 57.261 37.037 0.00 0.00 30.39 3.01
346 353 2.001812 CTCACACCACGATCCTCAAG 57.998 55.000 0.00 0.00 0.00 3.02
349 356 1.000843 CACACCACGATCCTCAAGTGA 59.999 52.381 0.00 0.00 38.06 3.41
350 357 1.902508 ACACCACGATCCTCAAGTGAT 59.097 47.619 0.00 0.00 38.06 3.06
351 358 2.093973 ACACCACGATCCTCAAGTGATC 60.094 50.000 0.00 0.00 38.06 2.92
352 359 1.482593 ACCACGATCCTCAAGTGATCC 59.517 52.381 0.00 0.00 38.06 3.36
353 360 1.536922 CCACGATCCTCAAGTGATCCG 60.537 57.143 0.00 0.00 38.06 4.18
362 369 4.040461 TCCTCAAGTGATCCGTCTTTTCTT 59.960 41.667 0.00 0.00 0.00 2.52
373 380 5.816919 TCCGTCTTTTCTTTTGTCATCAAC 58.183 37.500 0.00 0.00 32.93 3.18
377 384 5.681543 GTCTTTTCTTTTGTCATCAACGACC 59.318 40.000 0.00 0.00 34.88 4.79
417 424 5.488645 TTCCTCGACCAACAAACTTTAAC 57.511 39.130 0.00 0.00 0.00 2.01
455 462 5.294306 TGTTTTCTTTTGTTGCAACACACAA 59.706 32.000 31.17 20.07 38.92 3.33
490 497 7.222999 GCTAGTATAAACAAAGAAGAGATGCGT 59.777 37.037 0.00 0.00 0.00 5.24
503 510 1.209019 AGATGCGTCCTTGCTCAATCT 59.791 47.619 1.23 0.00 35.36 2.40
530 561 4.202040 CCGTTTAGGTGATACCGTGATACA 60.202 45.833 0.00 0.00 44.90 2.29
539 570 1.557099 ACCGTGATACAGGCTCTTGA 58.443 50.000 0.00 0.00 0.00 3.02
588 619 0.035056 CCGGGAGCTCTTGGACATTT 60.035 55.000 14.64 0.00 0.00 2.32
631 664 5.072741 AGTCTTGAAATTGTGTGCAGGTAT 58.927 37.500 0.00 0.00 0.00 2.73
642 675 3.933332 GTGTGCAGGTATAACAACTCCTC 59.067 47.826 0.00 0.00 0.00 3.71
645 678 3.197766 TGCAGGTATAACAACTCCTCAGG 59.802 47.826 0.00 0.00 0.00 3.86
680 713 0.736325 GATCCAACGGTCCAGACGTG 60.736 60.000 0.00 0.00 44.83 4.49
681 714 1.469335 ATCCAACGGTCCAGACGTGT 61.469 55.000 0.00 0.00 44.83 4.49
698 731 4.617959 ACGTGTGTATCATGGTAGCATAC 58.382 43.478 7.18 3.24 42.04 2.39
703 736 4.923871 GTGTATCATGGTAGCATACGAAGG 59.076 45.833 7.18 0.00 44.28 3.46
724 757 2.418976 GCCGGTATCACCTGAAACTTTC 59.581 50.000 1.90 0.00 35.66 2.62
725 758 3.007635 CCGGTATCACCTGAAACTTTCC 58.992 50.000 0.00 0.00 35.66 3.13
728 761 4.600062 GGTATCACCTGAAACTTTCCCAT 58.400 43.478 0.00 0.00 34.73 4.00
729 762 4.640647 GGTATCACCTGAAACTTTCCCATC 59.359 45.833 0.00 0.00 34.73 3.51
735 769 0.811281 GAAACTTTCCCATCCAGCCG 59.189 55.000 0.00 0.00 0.00 5.52
806 840 2.291856 GAGAGTTCCTCCCACAGGG 58.708 63.158 0.00 0.00 43.67 4.45
988 1035 2.824041 CAATCTGGTTCCCGGCCG 60.824 66.667 21.04 21.04 0.00 6.13
1252 1319 4.607293 AGATGCTTTTTCCCCTTTTGAC 57.393 40.909 0.00 0.00 0.00 3.18
1400 1471 3.272334 GAAGGTATGCGCGGCCTG 61.272 66.667 16.15 0.00 32.16 4.85
1448 1521 5.012664 TGGTGGATTTAGTTTCTGCACTCTA 59.987 40.000 0.00 0.00 0.00 2.43
1586 1678 5.543507 ATGTGATGCCCAAGTTTGTTTTA 57.456 34.783 0.00 0.00 0.00 1.52
1600 1692 2.303175 TGTTTTAGCCTGGTGTGGAAC 58.697 47.619 0.00 0.00 37.35 3.62
1653 1745 5.579511 ACGAATTAAGCTACGTTGTAGCATT 59.420 36.000 25.66 17.87 42.68 3.56
1654 1746 6.091713 ACGAATTAAGCTACGTTGTAGCATTT 59.908 34.615 25.66 16.52 42.68 2.32
1660 1752 1.821216 ACGTTGTAGCATTTGAGGGG 58.179 50.000 0.00 0.00 0.00 4.79
1719 1811 3.580319 GCCACCCAGGGTCCAGTT 61.580 66.667 8.79 0.00 38.09 3.16
1760 1852 4.632153 TGACCTTTGAGTTTCTCTAGCAC 58.368 43.478 0.00 0.00 0.00 4.40
1818 1910 9.498176 ACTGTAAAAGGTAGTACAACCATTTAG 57.502 33.333 2.06 0.00 41.09 1.85
1819 1911 9.498176 CTGTAAAAGGTAGTACAACCATTTAGT 57.502 33.333 2.06 0.00 41.09 2.24
1820 1912 9.275398 TGTAAAAGGTAGTACAACCATTTAGTG 57.725 33.333 2.06 0.00 41.09 2.74
1837 1934 1.002746 TGGCACCGCTTATTGCAGA 60.003 52.632 0.00 0.00 43.06 4.26
1844 1941 2.224606 CCGCTTATTGCAGACATCCAT 58.775 47.619 0.00 0.00 43.06 3.41
1845 1942 2.225019 CCGCTTATTGCAGACATCCATC 59.775 50.000 0.00 0.00 43.06 3.51
1884 1981 6.688637 TCAGAAGTCTAATGATGCCATTTG 57.311 37.500 0.00 0.00 42.56 2.32
1907 2074 4.672801 GCTTGGCTTCGATTCCTTTACTTG 60.673 45.833 5.26 0.00 0.00 3.16
1915 2082 7.095355 GCTTCGATTCCTTTACTTGTCTTGTTA 60.095 37.037 0.00 0.00 0.00 2.41
1977 2144 5.163713 GCTGATTCCAAACAGATCAACCTAC 60.164 44.000 0.00 0.00 36.38 3.18
1982 2149 3.556213 CCAAACAGATCAACCTACGGTCA 60.556 47.826 0.00 0.00 33.12 4.02
1995 2162 0.690762 ACGGTCAGCATTAGTTGGGT 59.309 50.000 0.00 0.00 0.00 4.51
1999 2166 1.202348 GTCAGCATTAGTTGGGTTGGC 59.798 52.381 0.00 0.00 0.00 4.52
2043 2211 4.619973 TGTTTTCTGCATTGATTCCACAC 58.380 39.130 0.00 0.00 0.00 3.82
2064 2244 2.351726 CGGTTATTGGCTTACTGCAGAC 59.648 50.000 23.35 6.49 45.15 3.51
2068 2248 0.606401 TTGGCTTACTGCAGACCAGC 60.606 55.000 23.35 21.91 45.78 4.85
2071 2251 0.537188 GCTTACTGCAGACCAGCCTA 59.463 55.000 23.35 0.00 45.78 3.93
2086 2266 3.826729 CCAGCCTAAGCCTTTTTGTACTT 59.173 43.478 0.00 0.00 41.25 2.24
2087 2267 5.007682 CCAGCCTAAGCCTTTTTGTACTTA 58.992 41.667 0.00 0.00 41.25 2.24
2107 2287 7.052142 ACTTATATAAGGTCACTGTGTAGCC 57.948 40.000 23.24 8.84 37.62 3.93
2369 2552 5.789574 ACATTTAGGTCCCATTAGGTGAA 57.210 39.130 0.00 0.00 36.75 3.18
2414 2597 5.309323 TGTGTTGAGTTTTCTGACAAAGG 57.691 39.130 0.00 0.00 0.00 3.11
2526 2709 4.146564 TGGCCACATTATGATGAATGGAG 58.853 43.478 0.00 0.00 40.50 3.86
2552 2735 8.603242 AACACCAAAAAGTATCCGCTATATAG 57.397 34.615 5.30 5.30 0.00 1.31
2859 3043 6.924111 TCTTTGGGAATGCAAAGAATTAGAC 58.076 36.000 0.00 0.00 42.35 2.59
2918 3102 7.014038 GCTCCTGAGGTCATATCATTTTGAATT 59.986 37.037 0.00 0.00 0.00 2.17
2949 3133 6.119536 TGGTGGGTGTTGATTGTATTCTATC 58.880 40.000 0.00 0.00 0.00 2.08
2955 3139 6.978659 GGTGTTGATTGTATTCTATCGAGACA 59.021 38.462 11.25 4.53 36.22 3.41
2959 3143 8.535592 GTTGATTGTATTCTATCGAGACAACTG 58.464 37.037 0.00 0.00 32.83 3.16
3110 3297 7.096884 TGTACTTGATGGATAGTGACAGTAC 57.903 40.000 0.00 0.00 0.00 2.73
3210 3398 7.623999 AGATCTCCTTTATGAGAATTGGCTA 57.376 36.000 0.00 0.00 44.16 3.93
3230 3418 5.175859 GCTACTCTGTTGGTGTATTTGCTA 58.824 41.667 0.00 0.00 0.00 3.49
3250 3438 7.194607 TGCTATGAGCTATGAAAAATACAGC 57.805 36.000 0.00 0.00 42.97 4.40
3267 3455 1.152525 GCCCCCTCCGTCTCTATGA 60.153 63.158 0.00 0.00 0.00 2.15
3270 3458 2.822006 GCCCCCTCCGTCTCTATGATTA 60.822 54.545 0.00 0.00 0.00 1.75
3272 3460 3.901844 CCCCCTCCGTCTCTATGATTAAA 59.098 47.826 0.00 0.00 0.00 1.52
3274 3462 5.013183 CCCCCTCCGTCTCTATGATTAAATT 59.987 44.000 0.00 0.00 0.00 1.82
3275 3463 5.934625 CCCCTCCGTCTCTATGATTAAATTG 59.065 44.000 0.00 0.00 0.00 2.32
3279 3473 7.383572 CCTCCGTCTCTATGATTAAATTGACAG 59.616 40.741 0.00 0.00 0.00 3.51
3398 3592 9.442047 ACTTAAGAAGTTCATCCTCACTATTTG 57.558 33.333 10.09 0.00 39.04 2.32
3399 3593 9.658799 CTTAAGAAGTTCATCCTCACTATTTGA 57.341 33.333 5.50 0.00 0.00 2.69
3402 3596 9.525826 AAGAAGTTCATCCTCACTATTTGATTT 57.474 29.630 5.50 0.00 32.17 2.17
3414 3608 9.661187 CTCACTATTTGATTTATCTCAACATGC 57.339 33.333 0.00 0.00 34.96 4.06
3415 3609 9.176460 TCACTATTTGATTTATCTCAACATGCA 57.824 29.630 0.00 0.00 34.96 3.96
3416 3610 9.447040 CACTATTTGATTTATCTCAACATGCAG 57.553 33.333 0.00 0.00 34.96 4.41
3417 3611 8.133627 ACTATTTGATTTATCTCAACATGCAGC 58.866 33.333 0.00 0.00 34.96 5.25
3418 3612 5.900865 TTGATTTATCTCAACATGCAGCA 57.099 34.783 0.00 0.00 30.34 4.41
3419 3613 6.459670 TTGATTTATCTCAACATGCAGCAT 57.540 33.333 0.52 0.52 30.34 3.79
3420 3614 7.571080 TTGATTTATCTCAACATGCAGCATA 57.429 32.000 7.82 0.00 30.34 3.14
3421 3615 7.198306 TGATTTATCTCAACATGCAGCATAG 57.802 36.000 7.82 1.70 0.00 2.23
3422 3616 5.428496 TTTATCTCAACATGCAGCATAGC 57.572 39.130 7.82 0.00 0.00 2.97
3423 3617 1.671979 TCTCAACATGCAGCATAGCC 58.328 50.000 7.82 0.00 0.00 3.93
3424 3618 1.065272 TCTCAACATGCAGCATAGCCA 60.065 47.619 7.82 0.00 0.00 4.75
3425 3619 1.065102 CTCAACATGCAGCATAGCCAC 59.935 52.381 7.82 0.00 0.00 5.01
3426 3620 0.812549 CAACATGCAGCATAGCCACA 59.187 50.000 7.82 0.00 0.00 4.17
3427 3621 1.407618 CAACATGCAGCATAGCCACAT 59.592 47.619 7.82 0.00 0.00 3.21
3428 3622 1.315690 ACATGCAGCATAGCCACATC 58.684 50.000 7.82 0.00 0.00 3.06
3429 3623 1.314730 CATGCAGCATAGCCACATCA 58.685 50.000 7.82 0.00 0.00 3.07
3430 3624 1.886542 CATGCAGCATAGCCACATCAT 59.113 47.619 7.82 0.00 0.00 2.45
3431 3625 1.601166 TGCAGCATAGCCACATCATC 58.399 50.000 0.00 0.00 0.00 2.92
3432 3626 1.134037 TGCAGCATAGCCACATCATCA 60.134 47.619 0.00 0.00 0.00 3.07
3433 3627 2.160205 GCAGCATAGCCACATCATCAT 58.840 47.619 0.00 0.00 0.00 2.45
3434 3628 2.161808 GCAGCATAGCCACATCATCATC 59.838 50.000 0.00 0.00 0.00 2.92
3435 3629 2.747989 CAGCATAGCCACATCATCATCC 59.252 50.000 0.00 0.00 0.00 3.51
3436 3630 2.374170 AGCATAGCCACATCATCATCCA 59.626 45.455 0.00 0.00 0.00 3.41
3437 3631 3.151554 GCATAGCCACATCATCATCCAA 58.848 45.455 0.00 0.00 0.00 3.53
3438 3632 3.762288 GCATAGCCACATCATCATCCAAT 59.238 43.478 0.00 0.00 0.00 3.16
3439 3633 4.142447 GCATAGCCACATCATCATCCAATC 60.142 45.833 0.00 0.00 0.00 2.67
3440 3634 3.588210 AGCCACATCATCATCCAATCA 57.412 42.857 0.00 0.00 0.00 2.57
3441 3635 3.220110 AGCCACATCATCATCCAATCAC 58.780 45.455 0.00 0.00 0.00 3.06
3442 3636 2.953648 GCCACATCATCATCCAATCACA 59.046 45.455 0.00 0.00 0.00 3.58
3443 3637 3.572682 GCCACATCATCATCCAATCACAT 59.427 43.478 0.00 0.00 0.00 3.21
3444 3638 4.321008 GCCACATCATCATCCAATCACATC 60.321 45.833 0.00 0.00 0.00 3.06
3445 3639 4.217767 CCACATCATCATCCAATCACATCC 59.782 45.833 0.00 0.00 0.00 3.51
3446 3640 4.825085 CACATCATCATCCAATCACATCCA 59.175 41.667 0.00 0.00 0.00 3.41
3447 3641 5.048713 CACATCATCATCCAATCACATCCAG 60.049 44.000 0.00 0.00 0.00 3.86
3448 3642 3.483421 TCATCATCCAATCACATCCAGC 58.517 45.455 0.00 0.00 0.00 4.85
3449 3643 2.353357 TCATCCAATCACATCCAGCC 57.647 50.000 0.00 0.00 0.00 4.85
3450 3644 1.565288 TCATCCAATCACATCCAGCCA 59.435 47.619 0.00 0.00 0.00 4.75
3451 3645 2.176148 TCATCCAATCACATCCAGCCAT 59.824 45.455 0.00 0.00 0.00 4.40
3452 3646 2.061509 TCCAATCACATCCAGCCATG 57.938 50.000 0.00 0.00 0.00 3.66
3453 3647 1.285667 TCCAATCACATCCAGCCATGT 59.714 47.619 0.00 0.00 37.49 3.21
3454 3648 1.679680 CCAATCACATCCAGCCATGTC 59.320 52.381 0.00 0.00 34.60 3.06
3455 3649 2.371306 CAATCACATCCAGCCATGTCA 58.629 47.619 0.00 0.00 34.60 3.58
3456 3650 2.048444 ATCACATCCAGCCATGTCAC 57.952 50.000 0.00 0.00 34.60 3.67
3457 3651 0.691904 TCACATCCAGCCATGTCACA 59.308 50.000 0.00 0.00 34.60 3.58
3458 3652 1.282738 TCACATCCAGCCATGTCACAT 59.717 47.619 0.00 0.00 34.60 3.21
3459 3653 1.674441 CACATCCAGCCATGTCACATC 59.326 52.381 0.00 0.00 34.60 3.06
3460 3654 1.282738 ACATCCAGCCATGTCACATCA 59.717 47.619 0.00 0.00 30.76 3.07
3461 3655 1.674441 CATCCAGCCATGTCACATCAC 59.326 52.381 0.00 0.00 0.00 3.06
3462 3656 0.691904 TCCAGCCATGTCACATCACA 59.308 50.000 0.00 0.00 0.00 3.58
3463 3657 1.282738 TCCAGCCATGTCACATCACAT 59.717 47.619 0.00 0.00 37.49 3.21
3469 3663 3.400505 CATGTCACATCACATGCAGTC 57.599 47.619 0.83 0.00 45.43 3.51
3470 3664 1.812235 TGTCACATCACATGCAGTCC 58.188 50.000 0.00 0.00 0.00 3.85
3471 3665 1.089920 GTCACATCACATGCAGTCCC 58.910 55.000 0.00 0.00 0.00 4.46
3472 3666 0.691904 TCACATCACATGCAGTCCCA 59.308 50.000 0.00 0.00 0.00 4.37
3473 3667 0.806868 CACATCACATGCAGTCCCAC 59.193 55.000 0.00 0.00 0.00 4.61
3474 3668 0.694771 ACATCACATGCAGTCCCACT 59.305 50.000 0.00 0.00 0.00 4.00
3475 3669 1.339438 ACATCACATGCAGTCCCACTC 60.339 52.381 0.00 0.00 0.00 3.51
3476 3670 0.986527 ATCACATGCAGTCCCACTCA 59.013 50.000 0.00 0.00 0.00 3.41
3477 3671 0.764271 TCACATGCAGTCCCACTCAA 59.236 50.000 0.00 0.00 0.00 3.02
3478 3672 1.162698 CACATGCAGTCCCACTCAAG 58.837 55.000 0.00 0.00 0.00 3.02
3479 3673 1.059098 ACATGCAGTCCCACTCAAGA 58.941 50.000 0.00 0.00 0.00 3.02
3480 3674 1.271054 ACATGCAGTCCCACTCAAGAC 60.271 52.381 0.00 0.00 0.00 3.01
3481 3675 0.326264 ATGCAGTCCCACTCAAGACC 59.674 55.000 0.00 0.00 33.29 3.85
3482 3676 1.053835 TGCAGTCCCACTCAAGACCA 61.054 55.000 0.00 0.00 33.29 4.02
3483 3677 0.326264 GCAGTCCCACTCAAGACCAT 59.674 55.000 0.00 0.00 33.29 3.55
3484 3678 1.677217 GCAGTCCCACTCAAGACCATC 60.677 57.143 0.00 0.00 33.29 3.51
3485 3679 1.065854 CAGTCCCACTCAAGACCATCC 60.066 57.143 0.00 0.00 33.29 3.51
3486 3680 0.984230 GTCCCACTCAAGACCATCCA 59.016 55.000 0.00 0.00 0.00 3.41
3487 3681 1.351017 GTCCCACTCAAGACCATCCAA 59.649 52.381 0.00 0.00 0.00 3.53
3488 3682 2.025887 GTCCCACTCAAGACCATCCAAT 60.026 50.000 0.00 0.00 0.00 3.16
3489 3683 2.239654 TCCCACTCAAGACCATCCAATC 59.760 50.000 0.00 0.00 0.00 2.67
3490 3684 2.025981 CCCACTCAAGACCATCCAATCA 60.026 50.000 0.00 0.00 0.00 2.57
3491 3685 3.012518 CCACTCAAGACCATCCAATCAC 58.987 50.000 0.00 0.00 0.00 3.06
3492 3686 3.559811 CCACTCAAGACCATCCAATCACA 60.560 47.826 0.00 0.00 0.00 3.58
3493 3687 4.267536 CACTCAAGACCATCCAATCACAT 58.732 43.478 0.00 0.00 0.00 3.21
3494 3688 4.334759 CACTCAAGACCATCCAATCACATC 59.665 45.833 0.00 0.00 0.00 3.06
3495 3689 3.881688 CTCAAGACCATCCAATCACATCC 59.118 47.826 0.00 0.00 0.00 3.51
3496 3690 3.266513 TCAAGACCATCCAATCACATCCA 59.733 43.478 0.00 0.00 0.00 3.41
3497 3691 3.572632 AGACCATCCAATCACATCCAG 57.427 47.619 0.00 0.00 0.00 3.86
3498 3692 1.952296 GACCATCCAATCACATCCAGC 59.048 52.381 0.00 0.00 0.00 4.85
3499 3693 1.325355 CCATCCAATCACATCCAGCC 58.675 55.000 0.00 0.00 0.00 4.85
3500 3694 1.410507 CCATCCAATCACATCCAGCCA 60.411 52.381 0.00 0.00 0.00 4.75
3501 3695 2.594131 CATCCAATCACATCCAGCCAT 58.406 47.619 0.00 0.00 0.00 4.40
3502 3696 2.061509 TCCAATCACATCCAGCCATG 57.938 50.000 0.00 0.00 0.00 3.66
3503 3697 1.285667 TCCAATCACATCCAGCCATGT 59.714 47.619 0.00 0.00 37.49 3.21
3504 3698 1.679680 CCAATCACATCCAGCCATGTC 59.320 52.381 0.00 0.00 34.60 3.06
3505 3699 2.371306 CAATCACATCCAGCCATGTCA 58.629 47.619 0.00 0.00 34.60 3.58
3506 3700 2.048444 ATCACATCCAGCCATGTCAC 57.952 50.000 0.00 0.00 34.60 3.67
3507 3701 0.691904 TCACATCCAGCCATGTCACA 59.308 50.000 0.00 0.00 34.60 3.58
3508 3702 1.282738 TCACATCCAGCCATGTCACAT 59.717 47.619 0.00 0.00 34.60 3.21
3509 3703 1.674441 CACATCCAGCCATGTCACATC 59.326 52.381 0.00 0.00 34.60 3.06
3510 3704 1.282738 ACATCCAGCCATGTCACATCA 59.717 47.619 0.00 0.00 30.76 3.07
3511 3705 1.674441 CATCCAGCCATGTCACATCAC 59.326 52.381 0.00 0.00 0.00 3.06
3512 3706 0.691904 TCCAGCCATGTCACATCACA 59.308 50.000 0.00 0.00 0.00 3.58
3513 3707 1.282738 TCCAGCCATGTCACATCACAT 59.717 47.619 0.00 0.00 37.49 3.21
3519 3713 3.400505 CATGTCACATCACATGCAGTC 57.599 47.619 0.83 0.00 45.43 3.51
3520 3714 1.812235 TGTCACATCACATGCAGTCC 58.188 50.000 0.00 0.00 0.00 3.85
3521 3715 1.089920 GTCACATCACATGCAGTCCC 58.910 55.000 0.00 0.00 0.00 4.46
3522 3716 0.691904 TCACATCACATGCAGTCCCA 59.308 50.000 0.00 0.00 0.00 4.37
3523 3717 0.806868 CACATCACATGCAGTCCCAC 59.193 55.000 0.00 0.00 0.00 4.61
3524 3718 0.694771 ACATCACATGCAGTCCCACT 59.305 50.000 0.00 0.00 0.00 4.00
3525 3719 1.339438 ACATCACATGCAGTCCCACTC 60.339 52.381 0.00 0.00 0.00 3.51
3526 3720 0.986527 ATCACATGCAGTCCCACTCA 59.013 50.000 0.00 0.00 0.00 3.41
3527 3721 0.764271 TCACATGCAGTCCCACTCAA 59.236 50.000 0.00 0.00 0.00 3.02
3528 3722 1.162698 CACATGCAGTCCCACTCAAG 58.837 55.000 0.00 0.00 0.00 3.02
3529 3723 1.059098 ACATGCAGTCCCACTCAAGA 58.941 50.000 0.00 0.00 0.00 3.02
3530 3724 1.271054 ACATGCAGTCCCACTCAAGAC 60.271 52.381 0.00 0.00 0.00 3.01
3531 3725 0.326264 ATGCAGTCCCACTCAAGACC 59.674 55.000 0.00 0.00 33.29 3.85
3532 3726 1.053835 TGCAGTCCCACTCAAGACCA 61.054 55.000 0.00 0.00 33.29 4.02
3533 3727 0.603975 GCAGTCCCACTCAAGACCAC 60.604 60.000 0.00 0.00 33.29 4.16
3534 3728 0.319900 CAGTCCCACTCAAGACCACG 60.320 60.000 0.00 0.00 33.29 4.94
3535 3729 0.759436 AGTCCCACTCAAGACCACGT 60.759 55.000 0.00 0.00 33.29 4.49
3536 3730 0.319641 GTCCCACTCAAGACCACGTC 60.320 60.000 0.00 0.00 0.00 4.34
3537 3731 0.757561 TCCCACTCAAGACCACGTCA 60.758 55.000 0.00 0.00 34.60 4.35
3538 3732 0.105964 CCCACTCAAGACCACGTCAA 59.894 55.000 0.00 0.00 34.60 3.18
3539 3733 1.270839 CCCACTCAAGACCACGTCAAT 60.271 52.381 0.00 0.00 34.60 2.57
3540 3734 2.494059 CCACTCAAGACCACGTCAATT 58.506 47.619 0.00 0.00 34.60 2.32
3541 3735 2.878406 CCACTCAAGACCACGTCAATTT 59.122 45.455 0.00 0.00 34.60 1.82
3542 3736 4.062293 CCACTCAAGACCACGTCAATTTA 58.938 43.478 0.00 0.00 34.60 1.40
3543 3737 4.695455 CCACTCAAGACCACGTCAATTTAT 59.305 41.667 0.00 0.00 34.60 1.40
3544 3738 5.181245 CCACTCAAGACCACGTCAATTTATT 59.819 40.000 0.00 0.00 34.60 1.40
3545 3739 6.293955 CCACTCAAGACCACGTCAATTTATTT 60.294 38.462 0.00 0.00 34.60 1.40
3546 3740 7.138736 CACTCAAGACCACGTCAATTTATTTT 58.861 34.615 0.00 0.00 34.60 1.82
3547 3741 7.647715 CACTCAAGACCACGTCAATTTATTTTT 59.352 33.333 0.00 0.00 34.60 1.94
3548 3742 7.860872 ACTCAAGACCACGTCAATTTATTTTTC 59.139 33.333 0.00 0.00 34.60 2.29
3549 3743 7.708051 TCAAGACCACGTCAATTTATTTTTCA 58.292 30.769 0.00 0.00 34.60 2.69
3550 3744 7.860373 TCAAGACCACGTCAATTTATTTTTCAG 59.140 33.333 0.00 0.00 34.60 3.02
3551 3745 7.504924 AGACCACGTCAATTTATTTTTCAGA 57.495 32.000 0.00 0.00 34.60 3.27
3552 3746 8.110860 AGACCACGTCAATTTATTTTTCAGAT 57.889 30.769 0.00 0.00 34.60 2.90
3553 3747 8.576442 AGACCACGTCAATTTATTTTTCAGATT 58.424 29.630 0.00 0.00 34.60 2.40
3554 3748 9.191995 GACCACGTCAATTTATTTTTCAGATTT 57.808 29.630 0.00 0.00 32.09 2.17
3555 3749 8.977505 ACCACGTCAATTTATTTTTCAGATTTG 58.022 29.630 0.00 0.00 0.00 2.32
3556 3750 7.951565 CCACGTCAATTTATTTTTCAGATTTGC 59.048 33.333 0.00 0.00 0.00 3.68
3557 3751 8.702438 CACGTCAATTTATTTTTCAGATTTGCT 58.298 29.630 0.00 0.00 0.00 3.91
3558 3752 9.906660 ACGTCAATTTATTTTTCAGATTTGCTA 57.093 25.926 0.00 0.00 0.00 3.49
3571 3765 9.671279 TTTCAGATTTGCTATTTCACATCTAGA 57.329 29.630 0.00 0.00 33.22 2.43
3572 3766 9.842775 TTCAGATTTGCTATTTCACATCTAGAT 57.157 29.630 0.00 0.00 33.22 1.98
3573 3767 9.269453 TCAGATTTGCTATTTCACATCTAGATG 57.731 33.333 27.63 27.63 44.15 2.90
3605 3799 7.947282 AGTATCTCACATCTACTTTTCTAGCC 58.053 38.462 0.00 0.00 0.00 3.93
3606 3800 6.798427 ATCTCACATCTACTTTTCTAGCCA 57.202 37.500 0.00 0.00 0.00 4.75
3607 3801 5.967088 TCTCACATCTACTTTTCTAGCCAC 58.033 41.667 0.00 0.00 0.00 5.01
3608 3802 5.480422 TCTCACATCTACTTTTCTAGCCACA 59.520 40.000 0.00 0.00 0.00 4.17
3609 3803 6.155221 TCTCACATCTACTTTTCTAGCCACAT 59.845 38.462 0.00 0.00 0.00 3.21
3610 3804 6.108687 TCACATCTACTTTTCTAGCCACATG 58.891 40.000 0.00 0.00 0.00 3.21
3611 3805 6.070824 TCACATCTACTTTTCTAGCCACATGA 60.071 38.462 0.00 0.00 0.00 3.07
3612 3806 6.765036 CACATCTACTTTTCTAGCCACATGAT 59.235 38.462 0.00 0.00 0.00 2.45
3613 3807 7.281774 CACATCTACTTTTCTAGCCACATGATT 59.718 37.037 0.00 0.00 0.00 2.57
3614 3808 7.831193 ACATCTACTTTTCTAGCCACATGATTT 59.169 33.333 0.00 0.00 0.00 2.17
3615 3809 9.330063 CATCTACTTTTCTAGCCACATGATTTA 57.670 33.333 0.00 0.00 0.00 1.40
3616 3810 8.948631 TCTACTTTTCTAGCCACATGATTTAG 57.051 34.615 0.00 0.00 0.00 1.85
3617 3811 8.758829 TCTACTTTTCTAGCCACATGATTTAGA 58.241 33.333 0.00 0.00 0.00 2.10
3618 3812 7.617041 ACTTTTCTAGCCACATGATTTAGAC 57.383 36.000 0.00 0.00 0.00 2.59
3619 3813 7.168219 ACTTTTCTAGCCACATGATTTAGACA 58.832 34.615 0.00 0.00 0.00 3.41
3620 3814 7.831193 ACTTTTCTAGCCACATGATTTAGACAT 59.169 33.333 0.00 0.00 0.00 3.06
3621 3815 7.792374 TTTCTAGCCACATGATTTAGACATC 57.208 36.000 0.00 0.00 0.00 3.06
3622 3816 6.484364 TCTAGCCACATGATTTAGACATCA 57.516 37.500 0.00 0.00 37.58 3.07
3623 3817 6.888105 TCTAGCCACATGATTTAGACATCAA 58.112 36.000 0.00 0.00 36.74 2.57
3624 3818 6.988580 TCTAGCCACATGATTTAGACATCAAG 59.011 38.462 0.00 0.00 36.74 3.02
3625 3819 5.748402 AGCCACATGATTTAGACATCAAGA 58.252 37.500 0.00 0.00 36.74 3.02
3626 3820 6.363065 AGCCACATGATTTAGACATCAAGAT 58.637 36.000 0.00 0.00 36.74 2.40
3627 3821 6.832384 AGCCACATGATTTAGACATCAAGATT 59.168 34.615 0.00 0.00 36.74 2.40
3628 3822 7.994911 AGCCACATGATTTAGACATCAAGATTA 59.005 33.333 0.00 0.00 36.74 1.75
3629 3823 8.288208 GCCACATGATTTAGACATCAAGATTAG 58.712 37.037 0.00 0.00 36.74 1.73
3630 3824 9.334947 CCACATGATTTAGACATCAAGATTAGT 57.665 33.333 0.00 0.00 36.74 2.24
3669 3863 8.477419 TTTTTATTGACTGATCCTTTTCCTGT 57.523 30.769 0.00 0.00 0.00 4.00
3670 3864 9.581289 TTTTTATTGACTGATCCTTTTCCTGTA 57.419 29.630 0.00 0.00 0.00 2.74
3671 3865 8.561738 TTTATTGACTGATCCTTTTCCTGTAC 57.438 34.615 0.00 0.00 0.00 2.90
3672 3866 4.188247 TGACTGATCCTTTTCCTGTACG 57.812 45.455 0.00 0.00 0.00 3.67
3673 3867 2.930682 GACTGATCCTTTTCCTGTACGC 59.069 50.000 0.00 0.00 0.00 4.42
3674 3868 2.301870 ACTGATCCTTTTCCTGTACGCA 59.698 45.455 0.00 0.00 0.00 5.24
3675 3869 3.055094 ACTGATCCTTTTCCTGTACGCAT 60.055 43.478 0.00 0.00 0.00 4.73
3676 3870 3.941483 CTGATCCTTTTCCTGTACGCATT 59.059 43.478 0.00 0.00 0.00 3.56
3677 3871 5.092554 TGATCCTTTTCCTGTACGCATTA 57.907 39.130 0.00 0.00 0.00 1.90
3678 3872 4.873827 TGATCCTTTTCCTGTACGCATTAC 59.126 41.667 0.00 0.00 0.00 1.89
3679 3873 4.546829 TCCTTTTCCTGTACGCATTACT 57.453 40.909 0.00 0.00 0.00 2.24
3680 3874 4.901868 TCCTTTTCCTGTACGCATTACTT 58.098 39.130 0.00 0.00 0.00 2.24
3681 3875 4.693566 TCCTTTTCCTGTACGCATTACTTG 59.306 41.667 0.00 0.00 0.00 3.16
3706 3900 4.814294 CCCGTCGTGGCAGTAGGC 62.814 72.222 0.00 0.00 43.74 3.93
3715 3909 2.047274 GCAGTAGGCCGCTGTTGA 60.047 61.111 24.43 0.00 36.42 3.18
3716 3910 1.450312 GCAGTAGGCCGCTGTTGAT 60.450 57.895 24.43 0.00 36.42 2.57
3717 3911 1.432270 GCAGTAGGCCGCTGTTGATC 61.432 60.000 24.43 9.59 36.42 2.92
3718 3912 0.811616 CAGTAGGCCGCTGTTGATCC 60.812 60.000 18.43 0.00 0.00 3.36
3719 3913 1.220749 GTAGGCCGCTGTTGATCCA 59.779 57.895 0.00 0.00 0.00 3.41
3720 3914 0.179045 GTAGGCCGCTGTTGATCCAT 60.179 55.000 0.00 0.00 0.00 3.41
3721 3915 0.546122 TAGGCCGCTGTTGATCCATT 59.454 50.000 0.00 0.00 0.00 3.16
3722 3916 0.323725 AGGCCGCTGTTGATCCATTT 60.324 50.000 0.00 0.00 0.00 2.32
3723 3917 0.179129 GGCCGCTGTTGATCCATTTG 60.179 55.000 0.00 0.00 0.00 2.32
3724 3918 0.810648 GCCGCTGTTGATCCATTTGA 59.189 50.000 0.00 0.00 0.00 2.69
3725 3919 1.406539 GCCGCTGTTGATCCATTTGAT 59.593 47.619 0.00 0.00 36.01 2.57
3726 3920 2.159198 GCCGCTGTTGATCCATTTGATT 60.159 45.455 0.00 0.00 32.41 2.57
3727 3921 3.676873 GCCGCTGTTGATCCATTTGATTT 60.677 43.478 0.00 0.00 32.41 2.17
3728 3922 4.497300 CCGCTGTTGATCCATTTGATTTT 58.503 39.130 0.00 0.00 32.41 1.82
3729 3923 4.327898 CCGCTGTTGATCCATTTGATTTTG 59.672 41.667 0.00 0.00 32.41 2.44
3730 3924 4.925054 CGCTGTTGATCCATTTGATTTTGT 59.075 37.500 0.00 0.00 32.41 2.83
3731 3925 5.406175 CGCTGTTGATCCATTTGATTTTGTT 59.594 36.000 0.00 0.00 32.41 2.83
3732 3926 6.400303 CGCTGTTGATCCATTTGATTTTGTTC 60.400 38.462 0.00 0.00 32.41 3.18
3733 3927 6.128472 GCTGTTGATCCATTTGATTTTGTTCC 60.128 38.462 0.00 0.00 32.41 3.62
3734 3928 7.065120 TGTTGATCCATTTGATTTTGTTCCT 57.935 32.000 0.00 0.00 32.41 3.36
3735 3929 7.153985 TGTTGATCCATTTGATTTTGTTCCTC 58.846 34.615 0.00 0.00 32.41 3.71
3736 3930 5.953183 TGATCCATTTGATTTTGTTCCTCG 58.047 37.500 0.00 0.00 32.41 4.63
3737 3931 5.476599 TGATCCATTTGATTTTGTTCCTCGT 59.523 36.000 0.00 0.00 32.41 4.18
3738 3932 5.119931 TCCATTTGATTTTGTTCCTCGTG 57.880 39.130 0.00 0.00 0.00 4.35
3739 3933 3.674753 CCATTTGATTTTGTTCCTCGTGC 59.325 43.478 0.00 0.00 0.00 5.34
3740 3934 2.679355 TTGATTTTGTTCCTCGTGCG 57.321 45.000 0.00 0.00 0.00 5.34
3741 3935 1.588674 TGATTTTGTTCCTCGTGCGT 58.411 45.000 0.00 0.00 0.00 5.24
3742 3936 1.262950 TGATTTTGTTCCTCGTGCGTG 59.737 47.619 0.00 0.00 0.00 5.34
3743 3937 0.040425 ATTTTGTTCCTCGTGCGTGC 60.040 50.000 0.00 0.00 0.00 5.34
3744 3938 2.054140 TTTTGTTCCTCGTGCGTGCC 62.054 55.000 0.00 0.00 0.00 5.01
3745 3939 2.933878 TTTGTTCCTCGTGCGTGCCT 62.934 55.000 0.00 0.00 0.00 4.75
3746 3940 3.112709 GTTCCTCGTGCGTGCCTC 61.113 66.667 0.00 0.00 0.00 4.70
3747 3941 4.373116 TTCCTCGTGCGTGCCTCC 62.373 66.667 0.00 0.00 0.00 4.30
3749 3943 4.379243 CCTCGTGCGTGCCTCCTT 62.379 66.667 0.00 0.00 0.00 3.36
3750 3944 3.114616 CTCGTGCGTGCCTCCTTG 61.115 66.667 0.00 0.00 0.00 3.61
3751 3945 4.680237 TCGTGCGTGCCTCCTTGG 62.680 66.667 0.00 0.00 39.35 3.61
3760 3954 4.085876 CCTCCTTGGCTGTTGTGG 57.914 61.111 0.00 0.00 0.00 4.17
3761 3955 2.270986 CCTCCTTGGCTGTTGTGGC 61.271 63.158 0.00 0.00 0.00 5.01
3762 3956 1.228367 CTCCTTGGCTGTTGTGGCT 60.228 57.895 0.00 0.00 0.00 4.75
3763 3957 0.036732 CTCCTTGGCTGTTGTGGCTA 59.963 55.000 0.00 0.00 0.00 3.93
3764 3958 0.250727 TCCTTGGCTGTTGTGGCTAC 60.251 55.000 0.00 0.00 0.00 3.58
3765 3959 0.537143 CCTTGGCTGTTGTGGCTACA 60.537 55.000 0.00 0.00 34.31 2.74
3766 3960 1.317613 CTTGGCTGTTGTGGCTACAA 58.682 50.000 12.09 12.09 44.17 2.41
3767 3961 1.267806 CTTGGCTGTTGTGGCTACAAG 59.732 52.381 16.71 6.71 46.75 3.16
3768 3962 0.182537 TGGCTGTTGTGGCTACAAGT 59.817 50.000 16.71 0.00 46.75 3.16
3769 3963 0.593128 GGCTGTTGTGGCTACAAGTG 59.407 55.000 16.71 12.54 46.75 3.16
3770 3964 1.593196 GCTGTTGTGGCTACAAGTGA 58.407 50.000 16.71 2.65 46.75 3.41
3771 3965 2.154462 GCTGTTGTGGCTACAAGTGAT 58.846 47.619 16.71 0.00 46.75 3.06
3772 3966 2.554032 GCTGTTGTGGCTACAAGTGATT 59.446 45.455 16.71 0.00 46.75 2.57
3773 3967 3.004734 GCTGTTGTGGCTACAAGTGATTT 59.995 43.478 16.71 0.00 46.75 2.17
3774 3968 4.499696 GCTGTTGTGGCTACAAGTGATTTT 60.500 41.667 16.71 0.00 46.75 1.82
3775 3969 5.590530 TGTTGTGGCTACAAGTGATTTTT 57.409 34.783 16.71 0.00 46.75 1.94
3804 3998 9.771915 TTCATTTTTCATTTCTGTTTCTTTTGC 57.228 25.926 0.00 0.00 0.00 3.68
3805 3999 8.397148 TCATTTTTCATTTCTGTTTCTTTTGCC 58.603 29.630 0.00 0.00 0.00 4.52
3806 4000 7.920160 TTTTTCATTTCTGTTTCTTTTGCCT 57.080 28.000 0.00 0.00 0.00 4.75
3807 4001 7.920160 TTTTCATTTCTGTTTCTTTTGCCTT 57.080 28.000 0.00 0.00 0.00 4.35
3808 4002 7.920160 TTTCATTTCTGTTTCTTTTGCCTTT 57.080 28.000 0.00 0.00 0.00 3.11
3809 4003 7.920160 TTCATTTCTGTTTCTTTTGCCTTTT 57.080 28.000 0.00 0.00 0.00 2.27
3810 4004 7.920160 TCATTTCTGTTTCTTTTGCCTTTTT 57.080 28.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.069119 TGCATACAAGGTTAGATCTGATCGT 59.931 40.000 11.73 4.96 0.00 3.73
1 2 5.532557 TGCATACAAGGTTAGATCTGATCG 58.467 41.667 11.73 0.00 0.00 3.69
57 58 6.832520 AGAAAACAAAACCAAAAATTGCCT 57.167 29.167 0.00 0.00 0.00 4.75
68 70 9.020813 GTTGTTGAGAAGATAGAAAACAAAACC 57.979 33.333 0.00 0.00 38.73 3.27
83 85 6.554419 TCAATGTGAAGTTGTTGTTGAGAAG 58.446 36.000 0.00 0.00 0.00 2.85
147 153 5.506815 CCAACCGATATAGCTGAGTTCGTTA 60.507 44.000 0.00 0.00 0.00 3.18
186 193 1.442769 GCTTGAGATCGGAGCAAACA 58.557 50.000 11.50 0.00 36.45 2.83
203 210 7.707624 TGAAGAAAAATACATTGAGATGGCT 57.292 32.000 0.00 0.00 37.60 4.75
227 234 3.299503 AGGAGGCGGCAAATTCATTTAT 58.700 40.909 13.08 0.00 0.00 1.40
242 249 3.055094 TCAGTTCTAATGGTCAAGGAGGC 60.055 47.826 0.00 0.00 0.00 4.70
346 353 5.418310 TGACAAAAGAAAAGACGGATCAC 57.582 39.130 0.00 0.00 0.00 3.06
349 356 6.438763 GTTGATGACAAAAGAAAAGACGGAT 58.561 36.000 0.00 0.00 37.77 4.18
350 357 5.503357 CGTTGATGACAAAAGAAAAGACGGA 60.503 40.000 0.00 0.00 37.77 4.69
351 358 4.670621 CGTTGATGACAAAAGAAAAGACGG 59.329 41.667 0.00 0.00 37.77 4.79
352 359 5.392585 GTCGTTGATGACAAAAGAAAAGACG 59.607 40.000 0.00 0.00 38.75 4.18
353 360 5.681543 GGTCGTTGATGACAAAAGAAAAGAC 59.318 40.000 5.77 0.00 40.72 3.01
362 369 2.828877 AGAACGGTCGTTGATGACAAA 58.171 42.857 13.65 0.00 40.72 2.83
373 380 1.068474 GTGTCATGGAAGAACGGTCG 58.932 55.000 0.00 0.00 0.00 4.79
377 384 3.753272 AGGAATTGTGTCATGGAAGAACG 59.247 43.478 0.00 0.00 0.00 3.95
417 424 8.819974 ACAAAAGAAAACATTGCTTTGTATGAG 58.180 29.630 0.00 0.00 32.63 2.90
490 497 1.304282 GGGCCAGATTGAGCAAGGA 59.696 57.895 4.39 0.00 0.00 3.36
503 510 0.542805 GGTATCACCTAAACGGGCCA 59.457 55.000 4.39 0.00 34.73 5.36
530 561 0.535102 CCAACGGTTGTCAAGAGCCT 60.535 55.000 18.73 0.00 0.00 4.58
539 570 2.567169 TGATCTGAGATCCAACGGTTGT 59.433 45.455 19.01 1.89 0.00 3.32
603 636 4.639755 TGCACACAATTTCAAGACTCTTGA 59.360 37.500 16.22 16.22 0.00 3.02
604 637 4.923893 TGCACACAATTTCAAGACTCTTG 58.076 39.130 12.02 12.02 0.00 3.02
621 654 3.580895 TGAGGAGTTGTTATACCTGCACA 59.419 43.478 0.00 0.00 32.53 4.57
631 664 0.320374 CGGCACCTGAGGAGTTGTTA 59.680 55.000 4.99 0.00 0.00 2.41
642 675 2.202797 CAGATCCGACGGCACCTG 60.203 66.667 9.66 11.80 0.00 4.00
645 678 0.318275 GATCTCAGATCCGACGGCAC 60.318 60.000 9.66 5.50 0.00 5.01
680 713 4.923871 CCTTCGTATGCTACCATGATACAC 59.076 45.833 0.00 0.00 32.85 2.90
681 714 4.560716 GCCTTCGTATGCTACCATGATACA 60.561 45.833 0.00 0.00 32.85 2.29
698 731 1.227263 CAGGTGATACCGGCCTTCG 60.227 63.158 0.00 0.00 44.90 3.79
703 736 2.109425 AAGTTTCAGGTGATACCGGC 57.891 50.000 0.00 0.00 44.90 6.13
724 757 2.876368 GAACTGGACGGCTGGATGGG 62.876 65.000 0.00 0.00 0.00 4.00
725 758 1.450312 GAACTGGACGGCTGGATGG 60.450 63.158 0.00 0.00 0.00 3.51
728 761 3.691342 CGGAACTGGACGGCTGGA 61.691 66.667 0.00 0.00 0.00 3.86
729 762 2.907897 GATCGGAACTGGACGGCTGG 62.908 65.000 0.00 0.00 0.00 4.85
735 769 3.330766 CGTCTGATCGGAACTGGAC 57.669 57.895 5.62 0.00 0.00 4.02
806 840 3.478274 CCCCTCCTCTGGCTCTGC 61.478 72.222 0.00 0.00 0.00 4.26
988 1035 0.469917 TTCCCCATCCTCGATTGCTC 59.530 55.000 0.00 0.00 0.00 4.26
1207 1269 1.065273 CAGCAAGATTCGCCATGGC 59.935 57.895 27.67 27.67 37.85 4.40
1252 1319 4.171754 CCTCGTTAGTAAAAGTTCCCTCG 58.828 47.826 0.00 0.00 0.00 4.63
1258 1325 2.691927 CGGCCCTCGTTAGTAAAAGTT 58.308 47.619 0.00 0.00 0.00 2.66
1586 1678 4.643387 GCCGTTCCACACCAGGCT 62.643 66.667 0.00 0.00 44.06 4.58
1653 1745 1.064463 CAGGCTGCTAATTCCCCTCAA 60.064 52.381 0.00 0.00 0.00 3.02
1654 1746 0.548031 CAGGCTGCTAATTCCCCTCA 59.452 55.000 0.00 0.00 0.00 3.86
1660 1752 4.102035 CCAAAGTTCAGGCTGCTAATTC 57.898 45.455 10.34 0.00 0.00 2.17
1719 1811 1.152830 GCAAACCAGGGGAAGGACA 59.847 57.895 0.00 0.00 0.00 4.02
1760 1852 1.176527 AATGTCTGATGGCAAACCGG 58.823 50.000 0.00 0.00 39.70 5.28
1837 1934 7.071196 TGAAGCTAGGTAAAGTATGATGGATGT 59.929 37.037 0.00 0.00 0.00 3.06
1844 1941 7.616150 AGACTTCTGAAGCTAGGTAAAGTATGA 59.384 37.037 17.00 0.00 0.00 2.15
1845 1942 7.777095 AGACTTCTGAAGCTAGGTAAAGTATG 58.223 38.462 17.00 0.00 0.00 2.39
1884 1981 3.010420 AGTAAAGGAATCGAAGCCAAGC 58.990 45.455 9.28 0.00 0.00 4.01
1915 2082 7.335422 CCGCCTAAGATGCTATTTATCAAAGAT 59.665 37.037 0.00 0.00 0.00 2.40
1932 2099 5.125578 CAGCATATACATACTCCGCCTAAGA 59.874 44.000 0.00 0.00 0.00 2.10
1938 2105 4.806247 GGAATCAGCATATACATACTCCGC 59.194 45.833 0.00 0.00 0.00 5.54
1977 2144 1.468520 CAACCCAACTAATGCTGACCG 59.531 52.381 0.00 0.00 0.00 4.79
1982 2149 0.251165 ACGCCAACCCAACTAATGCT 60.251 50.000 0.00 0.00 0.00 3.79
1995 2162 2.101582 ACATTTGCCAAGTAAACGCCAA 59.898 40.909 0.00 0.00 0.00 4.52
1999 2166 7.401484 ACAATAAACATTTGCCAAGTAAACG 57.599 32.000 0.00 0.00 0.00 3.60
2014 2181 7.930325 TGGAATCAATGCAGAAAACAATAAACA 59.070 29.630 0.00 0.00 0.00 2.83
2036 2204 2.279935 AAGCCAATAACCGTGTGGAA 57.720 45.000 0.00 0.00 39.21 3.53
2043 2211 2.351726 GTCTGCAGTAAGCCAATAACCG 59.648 50.000 14.67 0.00 44.83 4.44
2064 2244 3.421844 AGTACAAAAAGGCTTAGGCTGG 58.578 45.455 9.59 2.43 38.81 4.85
2071 2251 9.969001 TGACCTTATATAAGTACAAAAAGGCTT 57.031 29.630 18.91 0.00 36.33 4.35
2086 2266 7.948447 ACTATGGCTACACAGTGACCTTATATA 59.052 37.037 7.81 0.00 31.99 0.86
2087 2267 6.782988 ACTATGGCTACACAGTGACCTTATAT 59.217 38.462 7.81 0.00 31.99 0.86
2131 2314 7.094890 GGACAAGAGCATCATTTATGACTATGG 60.095 40.741 0.00 0.00 40.03 2.74
2138 2321 4.467769 AGGGGACAAGAGCATCATTTATG 58.532 43.478 0.00 0.00 37.82 1.90
2141 2324 4.803329 ATAGGGGACAAGAGCATCATTT 57.197 40.909 0.00 0.00 37.82 2.32
2263 2446 2.427232 TTACAACGTCTCTTCCACGG 57.573 50.000 0.00 0.00 41.73 4.94
2325 2508 4.836125 AAGAAACATCGTTCAGCATGTT 57.164 36.364 0.00 0.00 43.61 2.71
2386 2569 5.163663 TGTCAGAAAACTCAACACATGGAAC 60.164 40.000 0.00 0.00 0.00 3.62
2526 2709 5.813080 ATAGCGGATACTTTTTGGTGTTC 57.187 39.130 0.00 0.00 0.00 3.18
2586 2770 2.178580 TCCCAAATTCATCCCAACAGC 58.821 47.619 0.00 0.00 0.00 4.40
2859 3043 2.554806 TTGGGCGTATCGATATAGCG 57.445 50.000 21.46 15.94 0.00 4.26
2918 3102 2.443958 TCAACACCCACCAATTGACA 57.556 45.000 7.12 0.00 0.00 3.58
2949 3133 2.797156 CAACCTTCTGACAGTTGTCTCG 59.203 50.000 12.97 5.14 44.99 4.04
2955 3139 1.843851 TCCCACAACCTTCTGACAGTT 59.156 47.619 1.59 0.00 0.00 3.16
2959 3143 1.133915 TGGTTCCCACAACCTTCTGAC 60.134 52.381 5.17 0.00 40.88 3.51
3012 3199 3.558033 GGTTCAACACCTAAACCTCCAA 58.442 45.455 0.00 0.00 43.29 3.53
3110 3297 9.941664 ATTAAAGCAGTTCAAATCGAATATGAG 57.058 29.630 0.00 0.00 35.63 2.90
3193 3381 7.201679 CCAACAGAGTAGCCAATTCTCATAAAG 60.202 40.741 0.00 0.00 0.00 1.85
3210 3398 5.804639 TCATAGCAAATACACCAACAGAGT 58.195 37.500 0.00 0.00 0.00 3.24
3230 3418 4.829492 GGGGCTGTATTTTTCATAGCTCAT 59.171 41.667 0.00 0.00 36.60 2.90
3250 3438 2.016905 AATCATAGAGACGGAGGGGG 57.983 55.000 0.00 0.00 0.00 5.40
3372 3566 9.442047 CAAATAGTGAGGATGAACTTCTTAAGT 57.558 33.333 1.63 0.00 45.46 2.24
3373 3567 9.658799 TCAAATAGTGAGGATGAACTTCTTAAG 57.341 33.333 0.00 0.00 0.00 1.85
3376 3570 9.525826 AAATCAAATAGTGAGGATGAACTTCTT 57.474 29.630 0.00 0.00 40.43 2.52
3388 3582 9.661187 GCATGTTGAGATAAATCAAATAGTGAG 57.339 33.333 0.00 0.00 40.72 3.51
3389 3583 9.176460 TGCATGTTGAGATAAATCAAATAGTGA 57.824 29.630 0.00 0.00 40.72 3.41
3390 3584 9.447040 CTGCATGTTGAGATAAATCAAATAGTG 57.553 33.333 0.00 0.00 40.72 2.74
3391 3585 8.133627 GCTGCATGTTGAGATAAATCAAATAGT 58.866 33.333 0.00 0.00 40.72 2.12
3392 3586 8.132995 TGCTGCATGTTGAGATAAATCAAATAG 58.867 33.333 0.00 0.00 40.72 1.73
3393 3587 7.998580 TGCTGCATGTTGAGATAAATCAAATA 58.001 30.769 0.00 0.00 40.72 1.40
3394 3588 6.869695 TGCTGCATGTTGAGATAAATCAAAT 58.130 32.000 0.00 0.00 40.72 2.32
3395 3589 6.270156 TGCTGCATGTTGAGATAAATCAAA 57.730 33.333 0.00 0.00 40.72 2.69
3396 3590 5.900865 TGCTGCATGTTGAGATAAATCAA 57.099 34.783 0.00 0.00 36.85 2.57
3397 3591 6.293790 GCTATGCTGCATGTTGAGATAAATCA 60.294 38.462 24.59 0.00 0.00 2.57
3398 3592 6.084925 GCTATGCTGCATGTTGAGATAAATC 58.915 40.000 24.59 0.00 0.00 2.17
3399 3593 5.048224 GGCTATGCTGCATGTTGAGATAAAT 60.048 40.000 24.59 0.00 34.04 1.40
3400 3594 4.276678 GGCTATGCTGCATGTTGAGATAAA 59.723 41.667 24.59 0.00 34.04 1.40
3401 3595 3.817084 GGCTATGCTGCATGTTGAGATAA 59.183 43.478 24.59 0.58 34.04 1.75
3402 3596 3.181452 TGGCTATGCTGCATGTTGAGATA 60.181 43.478 24.59 1.33 34.04 1.98
3403 3597 2.228059 GGCTATGCTGCATGTTGAGAT 58.772 47.619 24.59 0.00 34.04 2.75
3404 3598 1.065272 TGGCTATGCTGCATGTTGAGA 60.065 47.619 24.59 2.84 34.04 3.27
3405 3599 1.065102 GTGGCTATGCTGCATGTTGAG 59.935 52.381 24.59 14.67 34.04 3.02
3406 3600 1.097232 GTGGCTATGCTGCATGTTGA 58.903 50.000 24.59 3.99 34.04 3.18
3407 3601 0.812549 TGTGGCTATGCTGCATGTTG 59.187 50.000 24.59 14.84 34.04 3.33
3408 3602 1.679680 GATGTGGCTATGCTGCATGTT 59.320 47.619 24.59 2.10 34.04 2.71
3409 3603 1.315690 GATGTGGCTATGCTGCATGT 58.684 50.000 24.59 2.91 34.04 3.21
3410 3604 1.314730 TGATGTGGCTATGCTGCATG 58.685 50.000 24.59 14.98 34.04 4.06
3411 3605 2.160205 GATGATGTGGCTATGCTGCAT 58.840 47.619 20.18 20.18 34.04 3.96
3412 3606 1.134037 TGATGATGTGGCTATGCTGCA 60.134 47.619 4.13 4.13 34.04 4.41
3413 3607 1.601166 TGATGATGTGGCTATGCTGC 58.399 50.000 0.00 0.00 0.00 5.25
3414 3608 2.747989 GGATGATGATGTGGCTATGCTG 59.252 50.000 0.00 0.00 0.00 4.41
3415 3609 2.374170 TGGATGATGATGTGGCTATGCT 59.626 45.455 0.00 0.00 0.00 3.79
3416 3610 2.786777 TGGATGATGATGTGGCTATGC 58.213 47.619 0.00 0.00 0.00 3.14
3417 3611 5.007682 TGATTGGATGATGATGTGGCTATG 58.992 41.667 0.00 0.00 0.00 2.23
3418 3612 5.008331 GTGATTGGATGATGATGTGGCTAT 58.992 41.667 0.00 0.00 0.00 2.97
3419 3613 4.141436 TGTGATTGGATGATGATGTGGCTA 60.141 41.667 0.00 0.00 0.00 3.93
3420 3614 3.220110 GTGATTGGATGATGATGTGGCT 58.780 45.455 0.00 0.00 0.00 4.75
3421 3615 2.953648 TGTGATTGGATGATGATGTGGC 59.046 45.455 0.00 0.00 0.00 5.01
3422 3616 4.217767 GGATGTGATTGGATGATGATGTGG 59.782 45.833 0.00 0.00 0.00 4.17
3423 3617 4.825085 TGGATGTGATTGGATGATGATGTG 59.175 41.667 0.00 0.00 0.00 3.21
3424 3618 5.056553 TGGATGTGATTGGATGATGATGT 57.943 39.130 0.00 0.00 0.00 3.06
3425 3619 4.082733 GCTGGATGTGATTGGATGATGATG 60.083 45.833 0.00 0.00 0.00 3.07
3426 3620 4.079970 GCTGGATGTGATTGGATGATGAT 58.920 43.478 0.00 0.00 0.00 2.45
3427 3621 3.483421 GCTGGATGTGATTGGATGATGA 58.517 45.455 0.00 0.00 0.00 2.92
3428 3622 2.557056 GGCTGGATGTGATTGGATGATG 59.443 50.000 0.00 0.00 0.00 3.07
3429 3623 2.176148 TGGCTGGATGTGATTGGATGAT 59.824 45.455 0.00 0.00 0.00 2.45
3430 3624 1.565288 TGGCTGGATGTGATTGGATGA 59.435 47.619 0.00 0.00 0.00 2.92
3431 3625 2.061509 TGGCTGGATGTGATTGGATG 57.938 50.000 0.00 0.00 0.00 3.51
3432 3626 2.091499 ACATGGCTGGATGTGATTGGAT 60.091 45.455 0.00 0.00 35.17 3.41
3433 3627 1.285667 ACATGGCTGGATGTGATTGGA 59.714 47.619 0.00 0.00 35.17 3.53
3434 3628 1.679680 GACATGGCTGGATGTGATTGG 59.320 52.381 0.00 0.00 36.67 3.16
3435 3629 2.098607 GTGACATGGCTGGATGTGATTG 59.901 50.000 0.00 0.00 36.67 2.67
3436 3630 2.291089 TGTGACATGGCTGGATGTGATT 60.291 45.455 0.00 0.00 36.67 2.57
3437 3631 1.282738 TGTGACATGGCTGGATGTGAT 59.717 47.619 0.00 0.00 36.67 3.06
3438 3632 0.691904 TGTGACATGGCTGGATGTGA 59.308 50.000 0.00 0.00 36.67 3.58
3439 3633 1.674441 GATGTGACATGGCTGGATGTG 59.326 52.381 1.23 0.00 36.67 3.21
3440 3634 1.282738 TGATGTGACATGGCTGGATGT 59.717 47.619 1.23 0.00 39.34 3.06
3441 3635 1.674441 GTGATGTGACATGGCTGGATG 59.326 52.381 1.23 0.00 0.00 3.51
3442 3636 1.282738 TGTGATGTGACATGGCTGGAT 59.717 47.619 1.23 0.00 0.00 3.41
3443 3637 0.691904 TGTGATGTGACATGGCTGGA 59.308 50.000 1.23 0.00 0.00 3.86
3444 3638 1.404035 CATGTGATGTGACATGGCTGG 59.596 52.381 1.23 0.00 46.43 4.85
3445 3639 2.844122 CATGTGATGTGACATGGCTG 57.156 50.000 1.23 0.00 46.43 4.85
3450 3644 2.362736 GGACTGCATGTGATGTGACAT 58.637 47.619 0.00 0.00 37.01 3.06
3451 3645 1.611410 GGGACTGCATGTGATGTGACA 60.611 52.381 0.00 0.00 0.00 3.58
3452 3646 1.089920 GGGACTGCATGTGATGTGAC 58.910 55.000 0.00 0.00 0.00 3.67
3453 3647 0.691904 TGGGACTGCATGTGATGTGA 59.308 50.000 0.00 0.00 0.00 3.58
3454 3648 0.806868 GTGGGACTGCATGTGATGTG 59.193 55.000 0.00 0.00 0.00 3.21
3455 3649 0.694771 AGTGGGACTGCATGTGATGT 59.305 50.000 0.00 0.00 0.00 3.06
3456 3650 1.339342 TGAGTGGGACTGCATGTGATG 60.339 52.381 0.00 0.00 0.00 3.07
3457 3651 0.986527 TGAGTGGGACTGCATGTGAT 59.013 50.000 0.00 0.00 0.00 3.06
3458 3652 0.764271 TTGAGTGGGACTGCATGTGA 59.236 50.000 0.00 0.00 0.00 3.58
3459 3653 1.162698 CTTGAGTGGGACTGCATGTG 58.837 55.000 0.00 0.00 0.00 3.21
3460 3654 1.059098 TCTTGAGTGGGACTGCATGT 58.941 50.000 0.00 0.00 0.00 3.21
3461 3655 1.446907 GTCTTGAGTGGGACTGCATG 58.553 55.000 0.00 0.00 0.00 4.06
3462 3656 0.326264 GGTCTTGAGTGGGACTGCAT 59.674 55.000 0.00 0.00 33.46 3.96
3463 3657 1.053835 TGGTCTTGAGTGGGACTGCA 61.054 55.000 0.00 0.00 33.46 4.41
3464 3658 0.326264 ATGGTCTTGAGTGGGACTGC 59.674 55.000 0.00 0.00 33.46 4.40
3465 3659 1.065854 GGATGGTCTTGAGTGGGACTG 60.066 57.143 0.00 0.00 33.46 3.51
3466 3660 1.280457 GGATGGTCTTGAGTGGGACT 58.720 55.000 0.00 0.00 33.46 3.85
3467 3661 0.984230 TGGATGGTCTTGAGTGGGAC 59.016 55.000 0.00 0.00 0.00 4.46
3468 3662 1.741028 TTGGATGGTCTTGAGTGGGA 58.259 50.000 0.00 0.00 0.00 4.37
3469 3663 2.025981 TGATTGGATGGTCTTGAGTGGG 60.026 50.000 0.00 0.00 0.00 4.61
3470 3664 3.012518 GTGATTGGATGGTCTTGAGTGG 58.987 50.000 0.00 0.00 0.00 4.00
3471 3665 3.678289 TGTGATTGGATGGTCTTGAGTG 58.322 45.455 0.00 0.00 0.00 3.51
3472 3666 4.521146 GATGTGATTGGATGGTCTTGAGT 58.479 43.478 0.00 0.00 0.00 3.41
3473 3667 3.881688 GGATGTGATTGGATGGTCTTGAG 59.118 47.826 0.00 0.00 0.00 3.02
3474 3668 3.266513 TGGATGTGATTGGATGGTCTTGA 59.733 43.478 0.00 0.00 0.00 3.02
3475 3669 3.623703 TGGATGTGATTGGATGGTCTTG 58.376 45.455 0.00 0.00 0.00 3.02
3476 3670 3.894759 CTGGATGTGATTGGATGGTCTT 58.105 45.455 0.00 0.00 0.00 3.01
3477 3671 2.422519 GCTGGATGTGATTGGATGGTCT 60.423 50.000 0.00 0.00 0.00 3.85
3478 3672 1.952296 GCTGGATGTGATTGGATGGTC 59.048 52.381 0.00 0.00 0.00 4.02
3479 3673 1.410648 GGCTGGATGTGATTGGATGGT 60.411 52.381 0.00 0.00 0.00 3.55
3480 3674 1.325355 GGCTGGATGTGATTGGATGG 58.675 55.000 0.00 0.00 0.00 3.51
3481 3675 2.061509 TGGCTGGATGTGATTGGATG 57.938 50.000 0.00 0.00 0.00 3.51
3482 3676 2.091499 ACATGGCTGGATGTGATTGGAT 60.091 45.455 0.00 0.00 35.17 3.41
3483 3677 1.285667 ACATGGCTGGATGTGATTGGA 59.714 47.619 0.00 0.00 35.17 3.53
3484 3678 1.679680 GACATGGCTGGATGTGATTGG 59.320 52.381 0.00 0.00 36.67 3.16
3485 3679 2.098607 GTGACATGGCTGGATGTGATTG 59.901 50.000 0.00 0.00 36.67 2.67
3486 3680 2.291089 TGTGACATGGCTGGATGTGATT 60.291 45.455 0.00 0.00 36.67 2.57
3487 3681 1.282738 TGTGACATGGCTGGATGTGAT 59.717 47.619 0.00 0.00 36.67 3.06
3488 3682 0.691904 TGTGACATGGCTGGATGTGA 59.308 50.000 0.00 0.00 36.67 3.58
3489 3683 1.674441 GATGTGACATGGCTGGATGTG 59.326 52.381 1.23 0.00 36.67 3.21
3490 3684 1.282738 TGATGTGACATGGCTGGATGT 59.717 47.619 1.23 0.00 39.34 3.06
3491 3685 1.674441 GTGATGTGACATGGCTGGATG 59.326 52.381 1.23 0.00 0.00 3.51
3492 3686 1.282738 TGTGATGTGACATGGCTGGAT 59.717 47.619 1.23 0.00 0.00 3.41
3493 3687 0.691904 TGTGATGTGACATGGCTGGA 59.308 50.000 1.23 0.00 0.00 3.86
3494 3688 1.404035 CATGTGATGTGACATGGCTGG 59.596 52.381 1.23 0.00 46.43 4.85
3495 3689 2.844122 CATGTGATGTGACATGGCTG 57.156 50.000 1.23 0.00 46.43 4.85
3500 3694 2.362736 GGACTGCATGTGATGTGACAT 58.637 47.619 0.00 0.00 37.01 3.06
3501 3695 1.611410 GGGACTGCATGTGATGTGACA 60.611 52.381 0.00 0.00 0.00 3.58
3502 3696 1.089920 GGGACTGCATGTGATGTGAC 58.910 55.000 0.00 0.00 0.00 3.67
3503 3697 0.691904 TGGGACTGCATGTGATGTGA 59.308 50.000 0.00 0.00 0.00 3.58
3504 3698 0.806868 GTGGGACTGCATGTGATGTG 59.193 55.000 0.00 0.00 0.00 3.21
3505 3699 0.694771 AGTGGGACTGCATGTGATGT 59.305 50.000 0.00 0.00 0.00 3.06
3506 3700 1.339342 TGAGTGGGACTGCATGTGATG 60.339 52.381 0.00 0.00 0.00 3.07
3507 3701 0.986527 TGAGTGGGACTGCATGTGAT 59.013 50.000 0.00 0.00 0.00 3.06
3508 3702 0.764271 TTGAGTGGGACTGCATGTGA 59.236 50.000 0.00 0.00 0.00 3.58
3509 3703 1.162698 CTTGAGTGGGACTGCATGTG 58.837 55.000 0.00 0.00 0.00 3.21
3510 3704 1.059098 TCTTGAGTGGGACTGCATGT 58.941 50.000 0.00 0.00 0.00 3.21
3511 3705 1.446907 GTCTTGAGTGGGACTGCATG 58.553 55.000 0.00 0.00 0.00 4.06
3512 3706 0.326264 GGTCTTGAGTGGGACTGCAT 59.674 55.000 0.00 0.00 33.46 3.96
3513 3707 1.053835 TGGTCTTGAGTGGGACTGCA 61.054 55.000 0.00 0.00 33.46 4.41
3514 3708 0.603975 GTGGTCTTGAGTGGGACTGC 60.604 60.000 0.00 0.00 33.46 4.40
3515 3709 0.319900 CGTGGTCTTGAGTGGGACTG 60.320 60.000 0.00 0.00 33.46 3.51
3516 3710 0.759436 ACGTGGTCTTGAGTGGGACT 60.759 55.000 0.00 0.00 33.46 3.85
3517 3711 0.319641 GACGTGGTCTTGAGTGGGAC 60.320 60.000 0.00 0.00 0.00 4.46
3518 3712 0.757561 TGACGTGGTCTTGAGTGGGA 60.758 55.000 0.00 0.00 33.15 4.37
3519 3713 0.105964 TTGACGTGGTCTTGAGTGGG 59.894 55.000 0.00 0.00 33.15 4.61
3520 3714 2.169832 ATTGACGTGGTCTTGAGTGG 57.830 50.000 0.00 0.00 33.15 4.00
3521 3715 5.862924 ATAAATTGACGTGGTCTTGAGTG 57.137 39.130 0.00 0.00 33.15 3.51
3522 3716 6.877611 AAATAAATTGACGTGGTCTTGAGT 57.122 33.333 0.00 0.00 33.15 3.41
3523 3717 7.860373 TGAAAAATAAATTGACGTGGTCTTGAG 59.140 33.333 0.00 0.00 33.15 3.02
3524 3718 7.708051 TGAAAAATAAATTGACGTGGTCTTGA 58.292 30.769 0.00 0.00 33.15 3.02
3525 3719 7.860373 TCTGAAAAATAAATTGACGTGGTCTTG 59.140 33.333 0.00 0.00 33.15 3.02
3526 3720 7.936584 TCTGAAAAATAAATTGACGTGGTCTT 58.063 30.769 0.00 0.00 33.15 3.01
3527 3721 7.504924 TCTGAAAAATAAATTGACGTGGTCT 57.495 32.000 0.00 0.00 33.15 3.85
3528 3722 8.742554 AATCTGAAAAATAAATTGACGTGGTC 57.257 30.769 0.00 0.00 0.00 4.02
3529 3723 8.977505 CAAATCTGAAAAATAAATTGACGTGGT 58.022 29.630 0.00 0.00 0.00 4.16
3530 3724 7.951565 GCAAATCTGAAAAATAAATTGACGTGG 59.048 33.333 0.00 0.00 0.00 4.94
3531 3725 8.702438 AGCAAATCTGAAAAATAAATTGACGTG 58.298 29.630 0.00 0.00 0.00 4.49
3532 3726 8.816640 AGCAAATCTGAAAAATAAATTGACGT 57.183 26.923 0.00 0.00 0.00 4.34
3545 3739 9.671279 TCTAGATGTGAAATAGCAAATCTGAAA 57.329 29.630 7.19 0.00 41.70 2.69
3546 3740 9.842775 ATCTAGATGTGAAATAGCAAATCTGAA 57.157 29.630 3.89 0.00 41.70 3.02
3547 3741 9.269453 CATCTAGATGTGAAATAGCAAATCTGA 57.731 33.333 22.42 4.16 41.70 3.27
3579 3773 9.069082 GGCTAGAAAAGTAGATGTGAGATACTA 57.931 37.037 0.00 0.00 0.00 1.82
3580 3774 7.561722 TGGCTAGAAAAGTAGATGTGAGATACT 59.438 37.037 0.00 0.00 0.00 2.12
3581 3775 7.650104 GTGGCTAGAAAAGTAGATGTGAGATAC 59.350 40.741 0.00 0.00 0.00 2.24
3582 3776 7.342026 TGTGGCTAGAAAAGTAGATGTGAGATA 59.658 37.037 0.00 0.00 0.00 1.98
3583 3777 6.155221 TGTGGCTAGAAAAGTAGATGTGAGAT 59.845 38.462 0.00 0.00 0.00 2.75
3584 3778 5.480422 TGTGGCTAGAAAAGTAGATGTGAGA 59.520 40.000 0.00 0.00 0.00 3.27
3585 3779 5.724328 TGTGGCTAGAAAAGTAGATGTGAG 58.276 41.667 0.00 0.00 0.00 3.51
3586 3780 5.738619 TGTGGCTAGAAAAGTAGATGTGA 57.261 39.130 0.00 0.00 0.00 3.58
3587 3781 6.108687 TCATGTGGCTAGAAAAGTAGATGTG 58.891 40.000 0.00 0.00 0.00 3.21
3588 3782 6.299805 TCATGTGGCTAGAAAAGTAGATGT 57.700 37.500 0.00 0.00 0.00 3.06
3589 3783 7.798596 AATCATGTGGCTAGAAAAGTAGATG 57.201 36.000 0.00 0.00 0.00 2.90
3590 3784 9.553064 CTAAATCATGTGGCTAGAAAAGTAGAT 57.447 33.333 0.00 0.00 0.00 1.98
3591 3785 8.758829 TCTAAATCATGTGGCTAGAAAAGTAGA 58.241 33.333 0.00 0.00 0.00 2.59
3592 3786 8.821894 GTCTAAATCATGTGGCTAGAAAAGTAG 58.178 37.037 0.00 0.00 0.00 2.57
3593 3787 8.318412 TGTCTAAATCATGTGGCTAGAAAAGTA 58.682 33.333 0.00 0.00 0.00 2.24
3594 3788 7.168219 TGTCTAAATCATGTGGCTAGAAAAGT 58.832 34.615 0.00 0.00 0.00 2.66
3595 3789 7.615582 TGTCTAAATCATGTGGCTAGAAAAG 57.384 36.000 0.00 0.00 0.00 2.27
3596 3790 7.828717 TGATGTCTAAATCATGTGGCTAGAAAA 59.171 33.333 0.00 0.00 31.58 2.29
3597 3791 7.337938 TGATGTCTAAATCATGTGGCTAGAAA 58.662 34.615 0.00 0.00 31.58 2.52
3598 3792 6.888105 TGATGTCTAAATCATGTGGCTAGAA 58.112 36.000 0.00 0.00 31.58 2.10
3599 3793 6.484364 TGATGTCTAAATCATGTGGCTAGA 57.516 37.500 0.00 0.00 31.58 2.43
3600 3794 6.988580 TCTTGATGTCTAAATCATGTGGCTAG 59.011 38.462 0.00 0.00 36.48 3.42
3601 3795 6.888105 TCTTGATGTCTAAATCATGTGGCTA 58.112 36.000 0.00 0.00 36.48 3.93
3602 3796 5.748402 TCTTGATGTCTAAATCATGTGGCT 58.252 37.500 0.00 0.00 36.48 4.75
3603 3797 6.630444 ATCTTGATGTCTAAATCATGTGGC 57.370 37.500 0.00 0.00 36.48 5.01
3604 3798 9.334947 ACTAATCTTGATGTCTAAATCATGTGG 57.665 33.333 0.00 0.00 36.48 4.17
3644 3838 8.477419 ACAGGAAAAGGATCAGTCAATAAAAA 57.523 30.769 0.00 0.00 0.00 1.94
3645 3839 9.010029 GTACAGGAAAAGGATCAGTCAATAAAA 57.990 33.333 0.00 0.00 0.00 1.52
3646 3840 7.333423 CGTACAGGAAAAGGATCAGTCAATAAA 59.667 37.037 0.00 0.00 0.00 1.40
3647 3841 6.816640 CGTACAGGAAAAGGATCAGTCAATAA 59.183 38.462 0.00 0.00 0.00 1.40
3648 3842 6.338146 CGTACAGGAAAAGGATCAGTCAATA 58.662 40.000 0.00 0.00 0.00 1.90
3649 3843 5.178797 CGTACAGGAAAAGGATCAGTCAAT 58.821 41.667 0.00 0.00 0.00 2.57
3650 3844 4.566004 CGTACAGGAAAAGGATCAGTCAA 58.434 43.478 0.00 0.00 0.00 3.18
3651 3845 3.616560 GCGTACAGGAAAAGGATCAGTCA 60.617 47.826 0.00 0.00 0.00 3.41
3652 3846 2.930682 GCGTACAGGAAAAGGATCAGTC 59.069 50.000 0.00 0.00 0.00 3.51
3653 3847 2.301870 TGCGTACAGGAAAAGGATCAGT 59.698 45.455 0.00 0.00 0.00 3.41
3654 3848 2.972625 TGCGTACAGGAAAAGGATCAG 58.027 47.619 0.00 0.00 0.00 2.90
3655 3849 3.627395 ATGCGTACAGGAAAAGGATCA 57.373 42.857 0.00 0.00 0.00 2.92
3656 3850 5.116882 AGTAATGCGTACAGGAAAAGGATC 58.883 41.667 0.00 0.00 34.88 3.36
3657 3851 5.099042 AGTAATGCGTACAGGAAAAGGAT 57.901 39.130 0.00 0.00 34.88 3.24
3658 3852 4.546829 AGTAATGCGTACAGGAAAAGGA 57.453 40.909 0.00 0.00 34.88 3.36
3659 3853 4.671766 GCAAGTAATGCGTACAGGAAAAGG 60.672 45.833 0.00 0.00 46.87 3.11
3660 3854 4.403453 GCAAGTAATGCGTACAGGAAAAG 58.597 43.478 0.00 0.00 46.87 2.27
3661 3855 4.413495 GCAAGTAATGCGTACAGGAAAA 57.587 40.909 0.00 0.00 46.87 2.29
3689 3883 4.814294 GCCTACTGCCACGACGGG 62.814 72.222 0.00 0.00 34.06 5.28
3699 3893 0.811616 GGATCAACAGCGGCCTACTG 60.812 60.000 18.34 18.34 41.08 2.74
3700 3894 1.264749 TGGATCAACAGCGGCCTACT 61.265 55.000 0.00 0.00 0.00 2.57
3701 3895 0.179045 ATGGATCAACAGCGGCCTAC 60.179 55.000 0.00 0.00 0.00 3.18
3702 3896 0.546122 AATGGATCAACAGCGGCCTA 59.454 50.000 0.00 0.00 0.00 3.93
3703 3897 0.323725 AAATGGATCAACAGCGGCCT 60.324 50.000 0.00 0.00 0.00 5.19
3704 3898 0.179129 CAAATGGATCAACAGCGGCC 60.179 55.000 0.00 0.00 0.00 6.13
3705 3899 0.810648 TCAAATGGATCAACAGCGGC 59.189 50.000 0.00 0.00 0.00 6.53
3706 3900 3.788333 AATCAAATGGATCAACAGCGG 57.212 42.857 0.00 0.00 34.28 5.52
3707 3901 4.925054 ACAAAATCAAATGGATCAACAGCG 59.075 37.500 0.00 0.00 34.28 5.18
3708 3902 6.128472 GGAACAAAATCAAATGGATCAACAGC 60.128 38.462 0.00 0.00 34.28 4.40
3709 3903 7.156673 AGGAACAAAATCAAATGGATCAACAG 58.843 34.615 0.00 0.00 34.28 3.16
3710 3904 7.065120 AGGAACAAAATCAAATGGATCAACA 57.935 32.000 0.00 0.00 34.28 3.33
3711 3905 6.308766 CGAGGAACAAAATCAAATGGATCAAC 59.691 38.462 0.00 0.00 34.28 3.18
3712 3906 6.015519 ACGAGGAACAAAATCAAATGGATCAA 60.016 34.615 0.00 0.00 34.28 2.57
3713 3907 5.476599 ACGAGGAACAAAATCAAATGGATCA 59.523 36.000 0.00 0.00 34.28 2.92
3714 3908 5.801947 CACGAGGAACAAAATCAAATGGATC 59.198 40.000 0.00 0.00 34.28 3.36
3715 3909 5.713025 CACGAGGAACAAAATCAAATGGAT 58.287 37.500 0.00 0.00 38.05 3.41
3716 3910 4.558496 GCACGAGGAACAAAATCAAATGGA 60.558 41.667 0.00 0.00 0.00 3.41
3717 3911 3.674753 GCACGAGGAACAAAATCAAATGG 59.325 43.478 0.00 0.00 0.00 3.16
3718 3912 3.361644 CGCACGAGGAACAAAATCAAATG 59.638 43.478 0.00 0.00 0.00 2.32
3719 3913 3.004315 ACGCACGAGGAACAAAATCAAAT 59.996 39.130 0.00 0.00 0.00 2.32
3720 3914 2.356382 ACGCACGAGGAACAAAATCAAA 59.644 40.909 0.00 0.00 0.00 2.69
3721 3915 1.944024 ACGCACGAGGAACAAAATCAA 59.056 42.857 0.00 0.00 0.00 2.57
3722 3916 1.262950 CACGCACGAGGAACAAAATCA 59.737 47.619 0.00 0.00 0.00 2.57
3723 3917 1.950472 CACGCACGAGGAACAAAATC 58.050 50.000 0.00 0.00 0.00 2.17
3724 3918 0.040425 GCACGCACGAGGAACAAAAT 60.040 50.000 0.00 0.00 0.00 1.82
3725 3919 1.353804 GCACGCACGAGGAACAAAA 59.646 52.632 0.00 0.00 0.00 2.44
3726 3920 2.539338 GGCACGCACGAGGAACAAA 61.539 57.895 0.00 0.00 0.00 2.83
3727 3921 2.970324 GGCACGCACGAGGAACAA 60.970 61.111 0.00 0.00 0.00 2.83
3728 3922 3.858868 GAGGCACGCACGAGGAACA 62.859 63.158 0.00 0.00 0.00 3.18
3729 3923 3.112709 GAGGCACGCACGAGGAAC 61.113 66.667 0.00 0.00 0.00 3.62
3730 3924 4.373116 GGAGGCACGCACGAGGAA 62.373 66.667 0.00 0.00 0.00 3.36
3732 3926 4.379243 AAGGAGGCACGCACGAGG 62.379 66.667 0.00 0.00 0.00 4.63
3733 3927 3.114616 CAAGGAGGCACGCACGAG 61.115 66.667 0.00 0.00 0.00 4.18
3734 3928 4.680237 CCAAGGAGGCACGCACGA 62.680 66.667 0.00 0.00 0.00 4.35
3743 3937 2.270986 GCCACAACAGCCAAGGAGG 61.271 63.158 0.00 0.00 41.84 4.30
3744 3938 0.036732 TAGCCACAACAGCCAAGGAG 59.963 55.000 0.00 0.00 0.00 3.69
3745 3939 0.250727 GTAGCCACAACAGCCAAGGA 60.251 55.000 0.00 0.00 0.00 3.36
3746 3940 0.537143 TGTAGCCACAACAGCCAAGG 60.537 55.000 0.00 0.00 0.00 3.61
3747 3941 1.267806 CTTGTAGCCACAACAGCCAAG 59.732 52.381 0.00 0.00 39.75 3.61
3748 3942 1.317613 CTTGTAGCCACAACAGCCAA 58.682 50.000 0.00 0.00 39.75 4.52
3749 3943 0.182537 ACTTGTAGCCACAACAGCCA 59.817 50.000 0.00 0.00 39.75 4.75
3750 3944 0.593128 CACTTGTAGCCACAACAGCC 59.407 55.000 0.00 0.00 39.75 4.85
3751 3945 1.593196 TCACTTGTAGCCACAACAGC 58.407 50.000 0.00 0.00 39.75 4.40
3752 3946 4.836125 AAATCACTTGTAGCCACAACAG 57.164 40.909 0.00 0.00 39.75 3.16
3753 3947 5.590530 AAAAATCACTTGTAGCCACAACA 57.409 34.783 0.00 0.00 39.75 3.33
3778 3972 9.771915 GCAAAAGAAACAGAAATGAAAAATGAA 57.228 25.926 0.00 0.00 0.00 2.57
3779 3973 8.397148 GGCAAAAGAAACAGAAATGAAAAATGA 58.603 29.630 0.00 0.00 0.00 2.57
3780 3974 8.400186 AGGCAAAAGAAACAGAAATGAAAAATG 58.600 29.630 0.00 0.00 0.00 2.32
3781 3975 8.510243 AGGCAAAAGAAACAGAAATGAAAAAT 57.490 26.923 0.00 0.00 0.00 1.82
3782 3976 7.920160 AGGCAAAAGAAACAGAAATGAAAAA 57.080 28.000 0.00 0.00 0.00 1.94
3783 3977 7.920160 AAGGCAAAAGAAACAGAAATGAAAA 57.080 28.000 0.00 0.00 0.00 2.29
3784 3978 7.920160 AAAGGCAAAAGAAACAGAAATGAAA 57.080 28.000 0.00 0.00 0.00 2.69
3785 3979 7.920160 AAAAGGCAAAAGAAACAGAAATGAA 57.080 28.000 0.00 0.00 0.00 2.57
3786 3980 7.920160 AAAAAGGCAAAAGAAACAGAAATGA 57.080 28.000 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.