Multiple sequence alignment - TraesCS2B01G371000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G371000 chr2B 100.000 2798 0 0 1 2798 529109176 529111973 0.000000e+00 5168.0
1 TraesCS2B01G371000 chr2B 92.799 611 17 5 2189 2798 529120092 529120676 0.000000e+00 859.0
2 TraesCS2B01G371000 chr2B 89.888 89 7 2 2710 2798 195476783 195476697 2.280000e-21 113.0
3 TraesCS2B01G371000 chr2D 94.760 1622 43 14 732 2338 449510481 449508887 0.000000e+00 2486.0
4 TraesCS2B01G371000 chr2D 93.913 115 5 2 1 114 449510743 449510630 3.710000e-39 172.0
5 TraesCS2B01G371000 chr2D 100.000 40 0 0 2303 2342 449508889 449508850 1.070000e-09 75.0
6 TraesCS2B01G371000 chr2A 92.415 1714 73 21 726 2424 593508842 593510513 0.000000e+00 2392.0
7 TraesCS2B01G371000 chr2A 95.928 221 9 0 383 603 222194896 222194676 2.650000e-95 359.0
8 TraesCS2B01G371000 chr2A 92.982 228 13 3 384 611 226553938 226553714 2.080000e-86 329.0
9 TraesCS2B01G371000 chr2A 93.860 114 6 1 1 114 593508315 593508427 1.330000e-38 171.0
10 TraesCS2B01G371000 chr5D 80.738 732 117 16 1085 1798 366906244 366906969 1.470000e-152 549.0
11 TraesCS2B01G371000 chr5B 79.187 836 138 24 982 1798 434036758 434037576 5.270000e-152 547.0
12 TraesCS2B01G371000 chr5B 98.127 267 5 0 114 380 476017952 476018218 1.520000e-127 466.0
13 TraesCS2B01G371000 chr5B 94.667 225 12 0 384 608 440262732 440262956 1.590000e-92 350.0
14 TraesCS2B01G371000 chr5B 92.576 229 16 1 378 606 537903896 537904123 7.470000e-86 327.0
15 TraesCS2B01G371000 chr5A 80.112 714 119 16 1104 1798 468931726 468932435 6.910000e-141 510.0
16 TraesCS2B01G371000 chr5A 90.323 124 12 0 1561 1684 502061824 502061947 2.230000e-36 163.0
17 TraesCS2B01G371000 chr5A 89.516 124 13 0 1561 1684 454765401 454765524 1.040000e-34 158.0
18 TraesCS2B01G371000 chr5A 92.593 81 3 3 2719 2798 244985594 244985516 2.280000e-21 113.0
19 TraesCS2B01G371000 chr6B 97.770 269 6 0 116 384 687701715 687701447 5.460000e-127 464.0
20 TraesCS2B01G371000 chr6B 97.770 269 6 0 116 384 687720101 687719833 5.460000e-127 464.0
21 TraesCS2B01G371000 chr6B 97.398 269 7 0 116 384 174617795 174617527 2.540000e-125 459.0
22 TraesCS2B01G371000 chr6B 89.516 124 13 0 1561 1684 543724401 543724524 1.040000e-34 158.0
23 TraesCS2B01G371000 chr6B 90.909 88 7 1 2711 2798 174437264 174437350 1.760000e-22 117.0
24 TraesCS2B01G371000 chr6B 90.909 88 6 2 2712 2798 703657596 703657510 1.760000e-22 117.0
25 TraesCS2B01G371000 chr1B 97.417 271 7 0 114 384 310400189 310400459 1.960000e-126 462.0
26 TraesCS2B01G371000 chr1B 97.417 271 7 0 114 384 660398845 660398575 1.960000e-126 462.0
27 TraesCS2B01G371000 chr1B 97.048 271 8 0 114 384 37568286 37568556 9.130000e-125 457.0
28 TraesCS2B01G371000 chr1B 94.091 220 11 2 385 604 362883 363100 1.610000e-87 333.0
29 TraesCS2B01G371000 chr1B 94.091 220 12 1 385 604 62411340 62411558 1.610000e-87 333.0
30 TraesCS2B01G371000 chr1B 85.185 108 8 6 2697 2798 32724237 32724342 1.370000e-18 104.0
31 TraesCS2B01G371000 chr7B 97.398 269 7 0 116 384 709760385 709760117 2.540000e-125 459.0
32 TraesCS2B01G371000 chr4B 97.048 271 8 0 114 384 483526212 483526482 9.130000e-125 457.0
33 TraesCS2B01G371000 chr3A 94.737 228 10 1 379 606 537506721 537506946 1.230000e-93 353.0
34 TraesCS2B01G371000 chr1A 94.619 223 12 0 385 607 530170190 530169968 2.060000e-91 346.0
35 TraesCS2B01G371000 chr3B 93.304 224 15 0 383 606 16893139 16893362 5.780000e-87 331.0
36 TraesCS2B01G371000 chr3B 92.857 84 5 1 2715 2798 497486533 497486615 1.360000e-23 121.0
37 TraesCS2B01G371000 chrUn 89.944 179 18 0 1506 1684 42863630 42863452 6.030000e-57 231.0
38 TraesCS2B01G371000 chr6A 89.516 124 13 0 1561 1684 593803656 593803533 1.040000e-34 158.0
39 TraesCS2B01G371000 chr6A 89.831 118 12 0 1567 1684 585417181 585417064 4.830000e-33 152.0
40 TraesCS2B01G371000 chr7A 93.827 81 3 2 2719 2798 441033300 441033379 1.360000e-23 121.0
41 TraesCS2B01G371000 chr7D 90.909 88 5 2 2714 2798 176009399 176009312 6.330000e-22 115.0
42 TraesCS2B01G371000 chr4A 100.000 28 0 0 1346 1373 538831610 538831637 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G371000 chr2B 529109176 529111973 2797 False 5168.0 5168 100.000000 1 2798 1 chr2B.!!$F1 2797
1 TraesCS2B01G371000 chr2B 529120092 529120676 584 False 859.0 859 92.799000 2189 2798 1 chr2B.!!$F2 609
2 TraesCS2B01G371000 chr2D 449508850 449510743 1893 True 911.0 2486 96.224333 1 2342 3 chr2D.!!$R1 2341
3 TraesCS2B01G371000 chr2A 593508315 593510513 2198 False 1281.5 2392 93.137500 1 2424 2 chr2A.!!$F1 2423
4 TraesCS2B01G371000 chr5D 366906244 366906969 725 False 549.0 549 80.738000 1085 1798 1 chr5D.!!$F1 713
5 TraesCS2B01G371000 chr5B 434036758 434037576 818 False 547.0 547 79.187000 982 1798 1 chr5B.!!$F1 816
6 TraesCS2B01G371000 chr5A 468931726 468932435 709 False 510.0 510 80.112000 1104 1798 1 chr5A.!!$F2 694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
443 445 0.032117 TGAGACCCGTCCTGATGGAT 60.032 55.0 6.98 0.0 45.29 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2021 2366 0.240945 GACCCCGTTGAAACATGCAG 59.759 55.0 0.0 0.0 0.0 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.416401 GTTCACTCCACTCTCCAACCA 59.584 52.381 0.00 0.00 0.00 3.67
58 60 3.494251 AGCATTTTGAATTGTCGGTTTGC 59.506 39.130 0.00 0.00 0.00 3.68
106 108 7.853299 TGAGTACCTGCAATGGTTATAACTTA 58.147 34.615 15.05 5.69 41.22 2.24
114 116 6.066032 GCAATGGTTATAACTTAAGGGCCTA 58.934 40.000 6.41 0.00 0.00 3.93
115 117 6.548251 GCAATGGTTATAACTTAAGGGCCTAA 59.452 38.462 6.41 0.51 0.00 2.69
116 118 7.255486 GCAATGGTTATAACTTAAGGGCCTAAG 60.255 40.741 6.41 13.32 35.40 2.18
117 119 6.256643 TGGTTATAACTTAAGGGCCTAAGG 57.743 41.667 6.41 1.82 33.85 2.69
130 132 2.024414 GCCTAAGGCTGGTTGTAATGG 58.976 52.381 0.00 0.00 46.69 3.16
131 133 2.654863 CCTAAGGCTGGTTGTAATGGG 58.345 52.381 0.00 0.00 0.00 4.00
132 134 2.025321 CCTAAGGCTGGTTGTAATGGGT 60.025 50.000 0.00 0.00 0.00 4.51
133 135 3.201266 CCTAAGGCTGGTTGTAATGGGTA 59.799 47.826 0.00 0.00 0.00 3.69
134 136 3.366052 AAGGCTGGTTGTAATGGGTAG 57.634 47.619 0.00 0.00 0.00 3.18
135 137 2.275466 AGGCTGGTTGTAATGGGTAGT 58.725 47.619 0.00 0.00 0.00 2.73
136 138 3.456842 AGGCTGGTTGTAATGGGTAGTA 58.543 45.455 0.00 0.00 0.00 1.82
137 139 4.045022 AGGCTGGTTGTAATGGGTAGTAT 58.955 43.478 0.00 0.00 0.00 2.12
138 140 4.102681 AGGCTGGTTGTAATGGGTAGTATC 59.897 45.833 0.00 0.00 0.00 2.24
139 141 4.141574 GGCTGGTTGTAATGGGTAGTATCA 60.142 45.833 0.00 0.00 0.00 2.15
140 142 5.456186 GGCTGGTTGTAATGGGTAGTATCAT 60.456 44.000 0.00 0.00 0.00 2.45
141 143 6.239772 GGCTGGTTGTAATGGGTAGTATCATA 60.240 42.308 0.00 0.00 0.00 2.15
142 144 7.221450 GCTGGTTGTAATGGGTAGTATCATAA 58.779 38.462 0.00 0.00 0.00 1.90
143 145 7.387948 GCTGGTTGTAATGGGTAGTATCATAAG 59.612 40.741 0.00 0.00 0.00 1.73
144 146 8.326765 TGGTTGTAATGGGTAGTATCATAAGT 57.673 34.615 0.00 0.00 0.00 2.24
145 147 8.774183 TGGTTGTAATGGGTAGTATCATAAGTT 58.226 33.333 0.00 0.00 0.00 2.66
155 157 9.804758 GGGTAGTATCATAAGTTAGTATCATGC 57.195 37.037 0.00 0.00 0.00 4.06
184 186 9.908747 ATGATACTAGTGTATGATACTACCTCC 57.091 37.037 5.39 0.00 39.29 4.30
185 187 8.327271 TGATACTAGTGTATGATACTACCTCCC 58.673 40.741 5.39 0.00 39.29 4.30
186 188 6.783517 ACTAGTGTATGATACTACCTCCCT 57.216 41.667 4.03 0.00 0.00 4.20
187 189 7.885209 ACTAGTGTATGATACTACCTCCCTA 57.115 40.000 4.03 0.00 0.00 3.53
188 190 8.285350 ACTAGTGTATGATACTACCTCCCTAA 57.715 38.462 4.03 0.00 0.00 2.69
189 191 8.902881 ACTAGTGTATGATACTACCTCCCTAAT 58.097 37.037 4.03 0.00 0.00 1.73
190 192 9.179909 CTAGTGTATGATACTACCTCCCTAATG 57.820 40.741 4.03 0.00 0.00 1.90
191 193 6.437793 AGTGTATGATACTACCTCCCTAATGC 59.562 42.308 4.03 0.00 0.00 3.56
192 194 5.417894 TGTATGATACTACCTCCCTAATGCG 59.582 44.000 4.03 0.00 0.00 4.73
193 195 3.840991 TGATACTACCTCCCTAATGCGT 58.159 45.455 0.00 0.00 0.00 5.24
194 196 4.989277 TGATACTACCTCCCTAATGCGTA 58.011 43.478 0.00 0.00 0.00 4.42
195 197 5.008331 TGATACTACCTCCCTAATGCGTAG 58.992 45.833 0.00 0.00 34.03 3.51
196 198 3.309600 ACTACCTCCCTAATGCGTAGT 57.690 47.619 0.00 0.00 35.86 2.73
197 199 4.443978 ACTACCTCCCTAATGCGTAGTA 57.556 45.455 0.00 0.00 38.23 1.82
198 200 4.995536 ACTACCTCCCTAATGCGTAGTAT 58.004 43.478 0.00 0.00 38.23 2.12
199 201 5.008980 ACTACCTCCCTAATGCGTAGTATC 58.991 45.833 0.00 0.00 38.23 2.24
200 202 3.840991 ACCTCCCTAATGCGTAGTATCA 58.159 45.455 0.00 0.00 28.26 2.15
201 203 4.417437 ACCTCCCTAATGCGTAGTATCAT 58.583 43.478 0.00 0.00 28.26 2.45
202 204 5.577100 ACCTCCCTAATGCGTAGTATCATA 58.423 41.667 0.00 0.00 28.26 2.15
203 205 6.195700 ACCTCCCTAATGCGTAGTATCATAT 58.804 40.000 0.00 0.00 28.26 1.78
204 206 6.096987 ACCTCCCTAATGCGTAGTATCATATG 59.903 42.308 0.00 0.00 28.26 1.78
205 207 6.461648 CCTCCCTAATGCGTAGTATCATATGG 60.462 46.154 2.13 0.00 28.26 2.74
206 208 5.955959 TCCCTAATGCGTAGTATCATATGGT 59.044 40.000 2.13 0.00 28.26 3.55
207 209 7.120716 TCCCTAATGCGTAGTATCATATGGTA 58.879 38.462 2.13 0.00 28.26 3.25
208 210 7.284716 TCCCTAATGCGTAGTATCATATGGTAG 59.715 40.741 2.13 0.00 28.26 3.18
209 211 7.068348 CCCTAATGCGTAGTATCATATGGTAGT 59.932 40.741 8.39 8.39 28.26 2.73
210 212 9.117183 CCTAATGCGTAGTATCATATGGTAGTA 57.883 37.037 6.47 6.47 28.26 1.82
213 215 8.747538 ATGCGTAGTATCATATGGTAGTATCA 57.252 34.615 12.65 13.18 0.00 2.15
214 216 7.982224 TGCGTAGTATCATATGGTAGTATCAC 58.018 38.462 12.65 3.66 0.00 3.06
215 217 7.608761 TGCGTAGTATCATATGGTAGTATCACA 59.391 37.037 12.65 9.11 0.00 3.58
216 218 8.622157 GCGTAGTATCATATGGTAGTATCACAT 58.378 37.037 12.65 0.00 0.00 3.21
238 240 8.918658 CACATATGACTTTATTTATTGCCATGC 58.081 33.333 10.38 0.00 0.00 4.06
239 241 8.640651 ACATATGACTTTATTTATTGCCATGCA 58.359 29.630 10.38 0.00 36.47 3.96
240 242 9.647797 CATATGACTTTATTTATTGCCATGCAT 57.352 29.630 0.00 0.00 38.76 3.96
241 243 7.956420 ATGACTTTATTTATTGCCATGCATG 57.044 32.000 20.19 20.19 38.76 4.06
242 244 7.110043 TGACTTTATTTATTGCCATGCATGA 57.890 32.000 28.31 8.76 38.76 3.07
243 245 6.979817 TGACTTTATTTATTGCCATGCATGAC 59.020 34.615 28.31 17.77 38.76 3.06
244 246 6.876155 ACTTTATTTATTGCCATGCATGACA 58.124 32.000 28.31 20.53 38.76 3.58
245 247 6.757947 ACTTTATTTATTGCCATGCATGACAC 59.242 34.615 28.31 16.49 38.76 3.67
246 248 4.739587 ATTTATTGCCATGCATGACACA 57.260 36.364 28.31 18.81 38.76 3.72
247 249 4.739587 TTTATTGCCATGCATGACACAT 57.260 36.364 28.31 18.68 38.76 3.21
248 250 5.848833 TTTATTGCCATGCATGACACATA 57.151 34.783 28.31 17.78 38.76 2.29
249 251 3.720949 ATTGCCATGCATGACACATAC 57.279 42.857 28.31 8.36 38.76 2.39
250 252 2.423446 TGCCATGCATGACACATACT 57.577 45.000 28.31 0.00 31.71 2.12
251 253 3.557228 TGCCATGCATGACACATACTA 57.443 42.857 28.31 0.00 31.71 1.82
252 254 3.469739 TGCCATGCATGACACATACTAG 58.530 45.455 28.31 8.01 31.71 2.57
253 255 3.118298 TGCCATGCATGACACATACTAGT 60.118 43.478 28.31 0.00 31.71 2.57
254 256 3.249320 GCCATGCATGACACATACTAGTG 59.751 47.826 28.31 7.28 44.93 2.74
255 257 7.601456 TGCCATGCATGACACATACTAGTGT 62.601 44.000 28.31 0.00 44.07 3.55
256 258 8.307927 TGCCATGCATGACACATACTAGTGTA 62.308 42.308 28.31 2.94 42.57 2.90
257 259 9.976056 TGCCATGCATGACACATACTAGTGTAG 62.976 44.444 28.31 5.81 42.57 2.74
274 276 9.856488 ACTAGTGTAGCATTTATTATGATACGG 57.144 33.333 0.00 2.94 42.05 4.02
275 277 9.856488 CTAGTGTAGCATTTATTATGATACGGT 57.144 33.333 8.18 0.00 42.05 4.83
302 304 8.661752 TCATGATATGATACTCAACCATCTCT 57.338 34.615 0.00 0.00 33.59 3.10
303 305 9.097946 TCATGATATGATACTCAACCATCTCTT 57.902 33.333 0.00 0.00 33.59 2.85
329 331 7.953005 TTTCATTAAATTCTATGCCACCTCA 57.047 32.000 0.00 0.00 0.00 3.86
330 332 8.537728 TTTCATTAAATTCTATGCCACCTCAT 57.462 30.769 0.00 0.00 0.00 2.90
331 333 7.750229 TCATTAAATTCTATGCCACCTCATC 57.250 36.000 0.00 0.00 0.00 2.92
332 334 7.289310 TCATTAAATTCTATGCCACCTCATCA 58.711 34.615 0.00 0.00 0.00 3.07
333 335 7.779326 TCATTAAATTCTATGCCACCTCATCAA 59.221 33.333 0.00 0.00 0.00 2.57
334 336 7.953005 TTAAATTCTATGCCACCTCATCAAA 57.047 32.000 0.00 0.00 0.00 2.69
335 337 6.461110 AAATTCTATGCCACCTCATCAAAG 57.539 37.500 0.00 0.00 0.00 2.77
336 338 4.574674 TTCTATGCCACCTCATCAAAGT 57.425 40.909 0.00 0.00 0.00 2.66
337 339 4.574674 TCTATGCCACCTCATCAAAGTT 57.425 40.909 0.00 0.00 0.00 2.66
338 340 4.264253 TCTATGCCACCTCATCAAAGTTG 58.736 43.478 0.00 0.00 0.00 3.16
339 341 0.961019 TGCCACCTCATCAAAGTTGC 59.039 50.000 0.00 0.00 0.00 4.17
340 342 0.244721 GCCACCTCATCAAAGTTGCC 59.755 55.000 0.00 0.00 0.00 4.52
341 343 1.915141 CCACCTCATCAAAGTTGCCT 58.085 50.000 0.00 0.00 0.00 4.75
342 344 2.879756 GCCACCTCATCAAAGTTGCCTA 60.880 50.000 0.00 0.00 0.00 3.93
343 345 3.012518 CCACCTCATCAAAGTTGCCTAG 58.987 50.000 0.00 0.00 0.00 3.02
344 346 3.560025 CCACCTCATCAAAGTTGCCTAGT 60.560 47.826 0.00 0.00 0.00 2.57
345 347 4.074970 CACCTCATCAAAGTTGCCTAGTT 58.925 43.478 0.00 0.00 0.00 2.24
346 348 4.074970 ACCTCATCAAAGTTGCCTAGTTG 58.925 43.478 0.00 0.00 0.00 3.16
347 349 3.441572 CCTCATCAAAGTTGCCTAGTTGG 59.558 47.826 0.00 0.00 39.35 3.77
360 362 3.748083 CCTAGTTGGCATGCATGATACT 58.252 45.455 30.64 26.11 0.00 2.12
361 363 4.898320 CCTAGTTGGCATGCATGATACTA 58.102 43.478 30.64 25.87 0.00 1.82
362 364 4.934001 CCTAGTTGGCATGCATGATACTAG 59.066 45.833 31.40 31.40 36.03 2.57
363 365 3.144506 AGTTGGCATGCATGATACTAGC 58.855 45.455 30.64 12.56 0.00 3.42
364 366 3.144506 GTTGGCATGCATGATACTAGCT 58.855 45.455 30.64 0.00 0.00 3.32
365 367 4.040829 AGTTGGCATGCATGATACTAGCTA 59.959 41.667 30.64 7.90 0.00 3.32
366 368 4.831674 TGGCATGCATGATACTAGCTAT 57.168 40.909 30.64 0.00 0.00 2.97
367 369 4.510571 TGGCATGCATGATACTAGCTATG 58.489 43.478 30.64 0.23 0.00 2.23
368 370 4.223477 TGGCATGCATGATACTAGCTATGA 59.777 41.667 30.64 0.00 0.00 2.15
369 371 5.104652 TGGCATGCATGATACTAGCTATGAT 60.105 40.000 30.64 0.00 0.00 2.45
370 372 6.098695 TGGCATGCATGATACTAGCTATGATA 59.901 38.462 30.64 0.00 0.00 2.15
371 373 6.423302 GGCATGCATGATACTAGCTATGATAC 59.577 42.308 30.64 5.71 0.00 2.24
372 374 7.208777 GCATGCATGATACTAGCTATGATACT 58.791 38.462 30.64 0.00 0.00 2.12
373 375 7.381948 GCATGCATGATACTAGCTATGATACTC 59.618 40.741 30.64 1.38 0.00 2.59
374 376 7.340122 TGCATGATACTAGCTATGATACTCC 57.660 40.000 0.00 0.00 0.00 3.85
375 377 6.322456 TGCATGATACTAGCTATGATACTCCC 59.678 42.308 0.00 0.00 0.00 4.30
376 378 6.322456 GCATGATACTAGCTATGATACTCCCA 59.678 42.308 0.00 0.00 0.00 4.37
377 379 7.015098 GCATGATACTAGCTATGATACTCCCAT 59.985 40.741 0.00 0.00 0.00 4.00
378 380 8.922237 CATGATACTAGCTATGATACTCCCATT 58.078 37.037 0.00 0.00 0.00 3.16
380 382 9.409918 TGATACTAGCTATGATACTCCCATTAC 57.590 37.037 0.00 0.00 0.00 1.89
381 383 9.409918 GATACTAGCTATGATACTCCCATTACA 57.590 37.037 0.00 0.00 0.00 2.41
382 384 9.769677 ATACTAGCTATGATACTCCCATTACAA 57.230 33.333 0.00 0.00 0.00 2.41
383 385 7.897864 ACTAGCTATGATACTCCCATTACAAC 58.102 38.462 0.00 0.00 0.00 3.32
384 386 5.784177 AGCTATGATACTCCCATTACAACG 58.216 41.667 0.00 0.00 0.00 4.10
385 387 4.929808 GCTATGATACTCCCATTACAACGG 59.070 45.833 0.00 0.00 0.00 4.44
386 388 5.279306 GCTATGATACTCCCATTACAACGGA 60.279 44.000 0.00 0.00 0.00 4.69
387 389 5.623956 ATGATACTCCCATTACAACGGAA 57.376 39.130 0.00 0.00 0.00 4.30
388 390 5.423704 TGATACTCCCATTACAACGGAAA 57.576 39.130 0.00 0.00 0.00 3.13
389 391 5.806818 TGATACTCCCATTACAACGGAAAA 58.193 37.500 0.00 0.00 0.00 2.29
390 392 6.239396 TGATACTCCCATTACAACGGAAAAA 58.761 36.000 0.00 0.00 0.00 1.94
423 425 6.240549 AGACCAGGTCTCATATAAACCAAG 57.759 41.667 17.31 0.00 38.71 3.61
424 426 5.726793 AGACCAGGTCTCATATAAACCAAGT 59.273 40.000 17.31 0.00 38.71 3.16
425 427 5.745227 ACCAGGTCTCATATAAACCAAGTG 58.255 41.667 0.00 0.00 35.43 3.16
426 428 5.487488 ACCAGGTCTCATATAAACCAAGTGA 59.513 40.000 0.00 0.00 35.43 3.41
427 429 6.051717 CCAGGTCTCATATAAACCAAGTGAG 58.948 44.000 0.00 0.00 38.07 3.51
428 430 6.127054 CCAGGTCTCATATAAACCAAGTGAGA 60.127 42.308 0.00 0.00 41.99 3.27
431 433 6.235231 TCTCATATAAACCAAGTGAGACCC 57.765 41.667 0.00 0.00 40.06 4.46
432 434 5.018539 TCATATAAACCAAGTGAGACCCG 57.981 43.478 0.00 0.00 0.00 5.28
433 435 4.468510 TCATATAAACCAAGTGAGACCCGT 59.531 41.667 0.00 0.00 0.00 5.28
434 436 2.825861 TAAACCAAGTGAGACCCGTC 57.174 50.000 0.00 0.00 0.00 4.79
435 437 0.108019 AAACCAAGTGAGACCCGTCC 59.892 55.000 0.00 0.00 0.00 4.79
436 438 0.763223 AACCAAGTGAGACCCGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
437 439 1.293498 CCAAGTGAGACCCGTCCTG 59.707 63.158 0.00 0.00 0.00 3.86
438 440 1.185618 CCAAGTGAGACCCGTCCTGA 61.186 60.000 0.00 0.00 0.00 3.86
439 441 0.898320 CAAGTGAGACCCGTCCTGAT 59.102 55.000 0.00 0.00 0.00 2.90
440 442 0.898320 AAGTGAGACCCGTCCTGATG 59.102 55.000 0.00 0.00 0.00 3.07
441 443 0.972983 AGTGAGACCCGTCCTGATGG 60.973 60.000 0.00 0.00 37.23 3.51
442 444 0.970937 GTGAGACCCGTCCTGATGGA 60.971 60.000 6.98 0.00 39.90 3.41
443 445 0.032117 TGAGACCCGTCCTGATGGAT 60.032 55.000 6.98 0.00 45.29 3.41
444 446 0.390860 GAGACCCGTCCTGATGGATG 59.609 60.000 6.98 0.00 45.29 3.51
452 454 2.569059 GTCCTGATGGATGACATGTGG 58.431 52.381 1.15 0.00 45.29 4.17
453 455 1.134007 TCCTGATGGATGACATGTGGC 60.134 52.381 1.15 0.00 40.72 5.01
454 456 1.409101 CCTGATGGATGACATGTGGCA 60.409 52.381 1.15 0.00 40.72 4.92
456 458 2.956333 CTGATGGATGACATGTGGCATT 59.044 45.455 1.15 0.00 45.42 3.56
457 459 2.953648 TGATGGATGACATGTGGCATTC 59.046 45.455 1.15 1.06 45.42 2.67
458 460 2.510928 TGGATGACATGTGGCATTCA 57.489 45.000 1.15 5.70 46.54 2.57
459 461 3.021177 TGGATGACATGTGGCATTCAT 57.979 42.857 1.15 0.00 43.95 2.57
460 462 4.167652 TGGATGACATGTGGCATTCATA 57.832 40.909 1.15 0.00 43.95 2.15
461 463 4.534797 TGGATGACATGTGGCATTCATAA 58.465 39.130 1.15 0.00 43.95 1.90
462 464 4.954826 TGGATGACATGTGGCATTCATAAA 59.045 37.500 1.15 0.00 43.95 1.40
463 465 5.599242 TGGATGACATGTGGCATTCATAAAT 59.401 36.000 1.15 0.00 43.95 1.40
464 466 6.154445 GGATGACATGTGGCATTCATAAATC 58.846 40.000 1.15 0.00 45.42 2.17
465 467 6.239092 GGATGACATGTGGCATTCATAAATCA 60.239 38.462 1.15 0.00 45.42 2.57
466 468 5.893687 TGACATGTGGCATTCATAAATCAC 58.106 37.500 1.15 0.00 0.00 3.06
467 469 5.418209 TGACATGTGGCATTCATAAATCACA 59.582 36.000 1.15 0.00 35.38 3.58
468 470 6.071503 TGACATGTGGCATTCATAAATCACAA 60.072 34.615 1.15 0.00 34.88 3.33
469 471 6.699366 ACATGTGGCATTCATAAATCACAAA 58.301 32.000 0.00 0.00 34.88 2.83
470 472 6.814644 ACATGTGGCATTCATAAATCACAAAG 59.185 34.615 0.00 0.00 34.88 2.77
471 473 5.170021 TGTGGCATTCATAAATCACAAAGC 58.830 37.500 0.00 0.00 30.74 3.51
472 474 5.170021 GTGGCATTCATAAATCACAAAGCA 58.830 37.500 0.00 0.00 0.00 3.91
473 475 5.813672 GTGGCATTCATAAATCACAAAGCAT 59.186 36.000 0.00 0.00 0.00 3.79
474 476 6.979817 GTGGCATTCATAAATCACAAAGCATA 59.020 34.615 0.00 0.00 0.00 3.14
475 477 7.654520 GTGGCATTCATAAATCACAAAGCATAT 59.345 33.333 0.00 0.00 0.00 1.78
476 478 8.858094 TGGCATTCATAAATCACAAAGCATATA 58.142 29.630 0.00 0.00 0.00 0.86
477 479 9.695526 GGCATTCATAAATCACAAAGCATATAA 57.304 29.630 0.00 0.00 0.00 0.98
485 487 7.992754 AATCACAAAGCATATAATCTCTCCC 57.007 36.000 0.00 0.00 0.00 4.30
486 488 5.869579 TCACAAAGCATATAATCTCTCCCC 58.130 41.667 0.00 0.00 0.00 4.81
487 489 5.006386 CACAAAGCATATAATCTCTCCCCC 58.994 45.833 0.00 0.00 0.00 5.40
519 521 3.105928 GGGGGTGGGATGGATGCT 61.106 66.667 0.00 0.00 0.00 3.79
520 522 2.704424 GGGGGTGGGATGGATGCTT 61.704 63.158 0.00 0.00 0.00 3.91
521 523 1.311059 GGGGTGGGATGGATGCTTT 59.689 57.895 0.00 0.00 0.00 3.51
522 524 1.044790 GGGGTGGGATGGATGCTTTG 61.045 60.000 0.00 0.00 0.00 2.77
523 525 0.324645 GGGTGGGATGGATGCTTTGT 60.325 55.000 0.00 0.00 0.00 2.83
524 526 0.819582 GGTGGGATGGATGCTTTGTG 59.180 55.000 0.00 0.00 0.00 3.33
525 527 1.616725 GGTGGGATGGATGCTTTGTGA 60.617 52.381 0.00 0.00 0.00 3.58
526 528 2.381911 GTGGGATGGATGCTTTGTGAT 58.618 47.619 0.00 0.00 0.00 3.06
527 529 2.762327 GTGGGATGGATGCTTTGTGATT 59.238 45.455 0.00 0.00 0.00 2.57
528 530 3.196254 GTGGGATGGATGCTTTGTGATTT 59.804 43.478 0.00 0.00 0.00 2.17
529 531 3.196039 TGGGATGGATGCTTTGTGATTTG 59.804 43.478 0.00 0.00 0.00 2.32
530 532 3.196254 GGGATGGATGCTTTGTGATTTGT 59.804 43.478 0.00 0.00 0.00 2.83
531 533 4.178540 GGATGGATGCTTTGTGATTTGTG 58.821 43.478 0.00 0.00 0.00 3.33
532 534 4.082081 GGATGGATGCTTTGTGATTTGTGA 60.082 41.667 0.00 0.00 0.00 3.58
533 535 4.933505 TGGATGCTTTGTGATTTGTGAA 57.066 36.364 0.00 0.00 0.00 3.18
534 536 5.471556 TGGATGCTTTGTGATTTGTGAAT 57.528 34.783 0.00 0.00 0.00 2.57
535 537 5.231702 TGGATGCTTTGTGATTTGTGAATG 58.768 37.500 0.00 0.00 0.00 2.67
536 538 5.010820 TGGATGCTTTGTGATTTGTGAATGA 59.989 36.000 0.00 0.00 0.00 2.57
537 539 5.346822 GGATGCTTTGTGATTTGTGAATGAC 59.653 40.000 0.00 0.00 31.04 3.06
538 540 5.259832 TGCTTTGTGATTTGTGAATGACA 57.740 34.783 0.00 0.00 37.55 3.58
554 556 2.654749 GACACGTGTCATCCATCAGA 57.345 50.000 37.16 0.00 44.18 3.27
555 557 2.959516 GACACGTGTCATCCATCAGAA 58.040 47.619 37.16 0.00 44.18 3.02
556 558 3.525537 GACACGTGTCATCCATCAGAAT 58.474 45.455 37.16 4.46 44.18 2.40
557 559 3.264947 ACACGTGTCATCCATCAGAATG 58.735 45.455 17.22 0.00 37.54 2.67
558 560 5.735023 GACACGTGTCATCCATCAGAATGG 61.735 50.000 37.16 0.00 46.98 3.16
561 563 3.209410 GTGTCATCCATCAGAATGGGTC 58.791 50.000 4.68 0.00 43.29 4.46
562 564 3.117745 TGTCATCCATCAGAATGGGTCT 58.882 45.455 4.68 0.00 43.29 3.85
563 565 3.135348 TGTCATCCATCAGAATGGGTCTC 59.865 47.826 4.68 0.00 43.29 3.36
564 566 3.135348 GTCATCCATCAGAATGGGTCTCA 59.865 47.826 4.68 0.00 43.29 3.27
565 567 3.135348 TCATCCATCAGAATGGGTCTCAC 59.865 47.826 4.68 0.00 43.29 3.51
566 568 2.441001 ATCCATCAGAATGGGTCTCACC 59.559 50.000 4.68 0.00 43.29 4.02
567 569 3.893100 ATCCATCAGAATGGGTCTCACCT 60.893 47.826 4.68 0.00 43.29 4.00
568 570 2.915349 CATCAGAATGGGTCTCACCTG 58.085 52.381 0.00 0.00 38.64 4.00
569 571 2.030027 TCAGAATGGGTCTCACCTGT 57.970 50.000 4.42 0.00 38.64 4.00
570 572 2.338809 TCAGAATGGGTCTCACCTGTT 58.661 47.619 4.42 0.00 38.64 3.16
571 573 3.516586 TCAGAATGGGTCTCACCTGTTA 58.483 45.455 4.42 0.00 38.64 2.41
572 574 3.907474 TCAGAATGGGTCTCACCTGTTAA 59.093 43.478 4.42 0.00 38.64 2.01
573 575 4.536090 TCAGAATGGGTCTCACCTGTTAAT 59.464 41.667 4.42 0.00 38.64 1.40
574 576 4.878397 CAGAATGGGTCTCACCTGTTAATC 59.122 45.833 0.00 0.00 38.64 1.75
575 577 3.933861 ATGGGTCTCACCTGTTAATCC 57.066 47.619 0.00 0.00 38.64 3.01
576 578 2.626785 TGGGTCTCACCTGTTAATCCA 58.373 47.619 0.00 0.00 38.64 3.41
577 579 3.189606 TGGGTCTCACCTGTTAATCCAT 58.810 45.455 0.00 0.00 38.64 3.41
578 580 3.054434 TGGGTCTCACCTGTTAATCCATG 60.054 47.826 0.00 0.00 38.64 3.66
579 581 3.199946 GGGTCTCACCTGTTAATCCATGA 59.800 47.826 0.00 0.00 38.64 3.07
580 582 4.446371 GGTCTCACCTGTTAATCCATGAG 58.554 47.826 0.00 0.00 34.73 2.90
581 583 4.162320 GGTCTCACCTGTTAATCCATGAGA 59.838 45.833 0.00 7.84 40.09 3.27
582 584 5.344743 TCTCACCTGTTAATCCATGAGAC 57.655 43.478 0.00 0.00 38.08 3.36
583 585 4.162320 TCTCACCTGTTAATCCATGAGACC 59.838 45.833 0.00 0.00 38.08 3.85
584 586 4.104086 TCACCTGTTAATCCATGAGACCT 58.896 43.478 0.00 0.00 0.00 3.85
585 587 4.080919 TCACCTGTTAATCCATGAGACCTG 60.081 45.833 0.00 0.00 0.00 4.00
586 588 3.200825 ACCTGTTAATCCATGAGACCTGG 59.799 47.826 0.00 0.00 34.93 4.45
587 589 3.200825 CCTGTTAATCCATGAGACCTGGT 59.799 47.826 0.00 0.00 35.19 4.00
588 590 4.194640 CTGTTAATCCATGAGACCTGGTG 58.805 47.826 2.82 0.00 35.19 4.17
589 591 3.587061 TGTTAATCCATGAGACCTGGTGT 59.413 43.478 2.82 0.00 35.19 4.16
590 592 4.192317 GTTAATCCATGAGACCTGGTGTC 58.808 47.826 16.54 16.54 44.82 3.67
592 594 1.956869 TCCATGAGACCTGGTGTCAT 58.043 50.000 28.22 28.22 45.31 3.06
593 595 3.114643 TCCATGAGACCTGGTGTCATA 57.885 47.619 31.62 19.02 43.15 2.15
594 596 3.033909 TCCATGAGACCTGGTGTCATAG 58.966 50.000 31.62 26.26 43.15 2.23
595 597 3.033909 CCATGAGACCTGGTGTCATAGA 58.966 50.000 31.62 11.06 43.15 1.98
596 598 3.452264 CCATGAGACCTGGTGTCATAGAA 59.548 47.826 31.62 10.71 43.15 2.10
597 599 4.102210 CCATGAGACCTGGTGTCATAGAAT 59.898 45.833 31.62 13.90 43.15 2.40
598 600 5.397221 CCATGAGACCTGGTGTCATAGAATT 60.397 44.000 31.62 13.24 43.15 2.17
599 601 6.118170 CATGAGACCTGGTGTCATAGAATTT 58.882 40.000 31.62 12.58 43.15 1.82
600 602 6.600822 CATGAGACCTGGTGTCATAGAATTTT 59.399 38.462 31.62 11.91 43.15 1.82
601 603 7.121759 CATGAGACCTGGTGTCATAGAATTTTT 59.878 37.037 31.62 11.26 43.15 1.94
643 645 8.958119 AAAAATCAACTGCGTATCTTCCTATA 57.042 30.769 0.00 0.00 0.00 1.31
647 649 8.809468 ATCAACTGCGTATCTTCCTATATAGA 57.191 34.615 11.53 0.00 0.00 1.98
679 950 9.606631 AAAATTAAACTTTCATGTTAGGTTGCA 57.393 25.926 9.42 0.00 0.00 4.08
682 953 9.855021 ATTAAACTTTCATGTTAGGTTGCATAC 57.145 29.630 9.42 0.00 0.00 2.39
685 956 3.620427 TCATGTTAGGTTGCATACGGT 57.380 42.857 0.00 0.00 0.00 4.83
709 982 8.456471 GGTAACCTTCTAACCATATTGTTGTTC 58.544 37.037 2.51 0.00 33.28 3.18
731 1004 3.752796 TCGAATTAAGGCGACCCAG 57.247 52.632 0.00 0.00 0.00 4.45
732 1005 0.177141 TCGAATTAAGGCGACCCAGG 59.823 55.000 0.00 0.00 0.00 4.45
733 1006 0.107848 CGAATTAAGGCGACCCAGGT 60.108 55.000 0.00 0.00 0.00 4.00
734 1007 1.137479 CGAATTAAGGCGACCCAGGTA 59.863 52.381 0.00 0.00 0.00 3.08
735 1008 2.558378 GAATTAAGGCGACCCAGGTAC 58.442 52.381 0.00 0.00 0.00 3.34
737 1010 1.350071 TTAAGGCGACCCAGGTACAA 58.650 50.000 0.00 0.00 0.00 2.41
765 1079 2.071778 AGAACAAGCAACCACCACAT 57.928 45.000 0.00 0.00 0.00 3.21
770 1084 2.235898 ACAAGCAACCACCACATTTTGT 59.764 40.909 0.00 0.00 0.00 2.83
779 1093 4.223923 ACCACCACATTTTGTCAAAAAGGA 59.776 37.500 23.44 3.06 38.95 3.36
780 1094 5.181748 CCACCACATTTTGTCAAAAAGGAA 58.818 37.500 23.44 2.75 38.95 3.36
781 1095 5.645497 CCACCACATTTTGTCAAAAAGGAAA 59.355 36.000 23.44 2.15 38.95 3.13
782 1096 6.150140 CCACCACATTTTGTCAAAAAGGAAAA 59.850 34.615 23.44 1.55 38.95 2.29
783 1097 7.308830 CCACCACATTTTGTCAAAAAGGAAAAA 60.309 33.333 23.44 0.94 38.95 1.94
807 1121 4.681074 AAATGGTAACCAACACAAAGGG 57.319 40.909 0.00 0.00 36.95 3.95
808 1122 3.603965 ATGGTAACCAACACAAAGGGA 57.396 42.857 0.00 0.00 36.95 4.20
809 1123 3.383698 TGGTAACCAACACAAAGGGAA 57.616 42.857 0.00 0.00 0.00 3.97
810 1124 3.709587 TGGTAACCAACACAAAGGGAAA 58.290 40.909 0.00 0.00 0.00 3.13
811 1125 3.702045 TGGTAACCAACACAAAGGGAAAG 59.298 43.478 0.00 0.00 0.00 2.62
812 1126 3.955551 GGTAACCAACACAAAGGGAAAGA 59.044 43.478 0.00 0.00 0.00 2.52
813 1127 4.403113 GGTAACCAACACAAAGGGAAAGAA 59.597 41.667 0.00 0.00 0.00 2.52
814 1128 4.736126 AACCAACACAAAGGGAAAGAAG 57.264 40.909 0.00 0.00 0.00 2.85
893 1207 0.535780 CTCACAAAGCCAGCTCACCA 60.536 55.000 0.00 0.00 0.00 4.17
908 1222 2.237143 CTCACCACACACCCTATCACAT 59.763 50.000 0.00 0.00 0.00 3.21
965 1279 2.680352 TCTCCCACTCGGCCACTC 60.680 66.667 2.24 0.00 0.00 3.51
966 1280 3.775654 CTCCCACTCGGCCACTCC 61.776 72.222 2.24 0.00 0.00 3.85
967 1281 4.631740 TCCCACTCGGCCACTCCA 62.632 66.667 2.24 0.00 34.01 3.86
968 1282 4.394712 CCCACTCGGCCACTCCAC 62.395 72.222 2.24 0.00 34.01 4.02
969 1283 3.314331 CCACTCGGCCACTCCACT 61.314 66.667 2.24 0.00 34.01 4.00
970 1284 2.047844 CACTCGGCCACTCCACTG 60.048 66.667 2.24 0.00 34.01 3.66
971 1285 4.008933 ACTCGGCCACTCCACTGC 62.009 66.667 2.24 0.00 34.01 4.40
972 1286 4.767255 CTCGGCCACTCCACTGCC 62.767 72.222 2.24 0.00 41.85 4.85
1011 1332 2.668212 GCCATAATGCGCCGCCTA 60.668 61.111 6.63 0.00 0.00 3.93
1725 2067 3.998924 CTCTAAGAAGAGCGCGACA 57.001 52.632 12.10 0.00 42.79 4.35
1819 2164 1.079127 CTTGTCCTTCGCGGTGGAT 60.079 57.895 20.30 0.00 34.58 3.41
1823 2168 1.982395 TCCTTCGCGGTGGATCTGT 60.982 57.895 15.11 0.00 0.00 3.41
1824 2169 0.681887 TCCTTCGCGGTGGATCTGTA 60.682 55.000 15.11 0.00 0.00 2.74
1825 2170 0.527817 CCTTCGCGGTGGATCTGTAC 60.528 60.000 6.13 0.00 0.00 2.90
1918 2263 2.031769 TGCTCGTGCAGTGAAATTTCTG 60.032 45.455 18.64 10.81 45.31 3.02
2021 2366 6.320418 ACCTAAATATTGGAAACCGATGGTTC 59.680 38.462 1.02 0.00 46.20 3.62
2057 2402 3.409570 GGGTCTCAGTAACTTTTGGACC 58.590 50.000 0.00 0.00 40.44 4.46
2064 2409 4.812626 TCAGTAACTTTTGGACCGTTCTTC 59.187 41.667 0.00 0.00 0.00 2.87
2076 2421 3.929610 GACCGTTCTTCTGAGAATCCTTG 59.070 47.826 0.00 0.00 43.41 3.61
2077 2422 2.675348 CCGTTCTTCTGAGAATCCTTGC 59.325 50.000 0.00 0.00 43.41 4.01
2190 2544 1.001706 GTTTTCTTCCGGCAGGTGTTC 60.002 52.381 0.00 0.00 39.05 3.18
2240 2596 5.336209 GCACGAACTGATTTTCTTTTACGAC 59.664 40.000 0.00 0.00 0.00 4.34
2424 2816 1.348036 GGATGCTAGAATACCCGCCTT 59.652 52.381 0.00 0.00 0.00 4.35
2425 2817 2.565834 GGATGCTAGAATACCCGCCTTA 59.434 50.000 0.00 0.00 0.00 2.69
2426 2818 3.197983 GGATGCTAGAATACCCGCCTTAT 59.802 47.826 0.00 0.00 0.00 1.73
2427 2819 4.404715 GGATGCTAGAATACCCGCCTTATA 59.595 45.833 0.00 0.00 0.00 0.98
2428 2820 5.105064 GGATGCTAGAATACCCGCCTTATAA 60.105 44.000 0.00 0.00 0.00 0.98
2429 2821 5.811796 TGCTAGAATACCCGCCTTATAAA 57.188 39.130 0.00 0.00 0.00 1.40
2430 2822 5.790593 TGCTAGAATACCCGCCTTATAAAG 58.209 41.667 0.00 0.00 0.00 1.85
2447 2839 2.841442 AAGGATGCTAGAATACCCGC 57.159 50.000 0.00 0.00 0.00 6.13
2448 2840 0.977395 AGGATGCTAGAATACCCGCC 59.023 55.000 0.00 0.00 0.00 6.13
2449 2841 0.977395 GGATGCTAGAATACCCGCCT 59.023 55.000 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.694150 CTTGGTTGGAGAGTGGAGTGA 59.306 52.381 0.00 0.00 0.00 3.41
58 60 7.097192 TCATTTAGTACTAACTGCAGGACTTG 58.903 38.462 21.99 5.70 36.20 3.16
81 83 6.308015 AGTTATAACCATTGCAGGTACTCA 57.692 37.500 12.05 0.00 42.25 3.41
114 116 2.647802 ACTACCCATTACAACCAGCCTT 59.352 45.455 0.00 0.00 0.00 4.35
115 117 2.275466 ACTACCCATTACAACCAGCCT 58.725 47.619 0.00 0.00 0.00 4.58
116 118 2.801077 ACTACCCATTACAACCAGCC 57.199 50.000 0.00 0.00 0.00 4.85
117 119 5.031066 TGATACTACCCATTACAACCAGC 57.969 43.478 0.00 0.00 0.00 4.85
118 120 8.429641 ACTTATGATACTACCCATTACAACCAG 58.570 37.037 0.00 0.00 0.00 4.00
119 121 8.326765 ACTTATGATACTACCCATTACAACCA 57.673 34.615 0.00 0.00 0.00 3.67
129 131 9.804758 GCATGATACTAACTTATGATACTACCC 57.195 37.037 0.00 0.00 0.00 3.69
158 160 9.908747 GGAGGTAGTATCATACACTAGTATCAT 57.091 37.037 0.00 0.00 38.88 2.45
159 161 8.327271 GGGAGGTAGTATCATACACTAGTATCA 58.673 40.741 0.00 0.00 38.88 2.15
160 162 8.550585 AGGGAGGTAGTATCATACACTAGTATC 58.449 40.741 0.00 0.00 38.88 2.24
161 163 8.465798 AGGGAGGTAGTATCATACACTAGTAT 57.534 38.462 0.00 0.00 41.57 2.12
162 164 7.885209 AGGGAGGTAGTATCATACACTAGTA 57.115 40.000 0.00 0.00 34.10 1.82
163 165 6.783517 AGGGAGGTAGTATCATACACTAGT 57.216 41.667 0.00 0.00 0.00 2.57
164 166 9.179909 CATTAGGGAGGTAGTATCATACACTAG 57.820 40.741 0.00 0.00 0.00 2.57
165 167 7.614583 GCATTAGGGAGGTAGTATCATACACTA 59.385 40.741 0.00 0.00 0.00 2.74
166 168 6.437793 GCATTAGGGAGGTAGTATCATACACT 59.562 42.308 0.00 0.00 0.00 3.55
167 169 6.625300 CGCATTAGGGAGGTAGTATCATACAC 60.625 46.154 0.00 0.00 0.00 2.90
168 170 5.417894 CGCATTAGGGAGGTAGTATCATACA 59.582 44.000 0.00 0.00 0.00 2.29
169 171 5.418209 ACGCATTAGGGAGGTAGTATCATAC 59.582 44.000 0.00 0.00 0.00 2.39
170 172 5.577100 ACGCATTAGGGAGGTAGTATCATA 58.423 41.667 0.00 0.00 0.00 2.15
171 173 4.417437 ACGCATTAGGGAGGTAGTATCAT 58.583 43.478 0.00 0.00 0.00 2.45
172 174 3.840991 ACGCATTAGGGAGGTAGTATCA 58.159 45.455 0.00 0.00 0.00 2.15
173 175 5.008980 ACTACGCATTAGGGAGGTAGTATC 58.991 45.833 0.68 0.00 41.27 2.24
174 176 4.995536 ACTACGCATTAGGGAGGTAGTAT 58.004 43.478 0.68 0.00 41.27 2.12
175 177 4.443978 ACTACGCATTAGGGAGGTAGTA 57.556 45.455 0.68 0.00 41.27 1.82
176 178 3.309600 ACTACGCATTAGGGAGGTAGT 57.690 47.619 0.00 0.00 39.04 2.73
177 179 5.008331 TGATACTACGCATTAGGGAGGTAG 58.992 45.833 0.00 0.00 37.26 3.18
178 180 4.989277 TGATACTACGCATTAGGGAGGTA 58.011 43.478 0.00 0.00 31.13 3.08
179 181 3.840991 TGATACTACGCATTAGGGAGGT 58.159 45.455 0.00 0.00 31.13 3.85
180 182 6.461648 CCATATGATACTACGCATTAGGGAGG 60.462 46.154 3.65 0.00 31.13 4.30
181 183 6.096987 ACCATATGATACTACGCATTAGGGAG 59.903 42.308 3.65 0.00 31.13 4.30
182 184 5.955959 ACCATATGATACTACGCATTAGGGA 59.044 40.000 3.65 0.00 31.13 4.20
183 185 6.222038 ACCATATGATACTACGCATTAGGG 57.778 41.667 3.65 0.00 31.13 3.53
184 186 7.997482 ACTACCATATGATACTACGCATTAGG 58.003 38.462 3.65 0.00 31.13 2.69
187 189 9.185680 TGATACTACCATATGATACTACGCATT 57.814 33.333 3.65 0.00 0.00 3.56
188 190 8.622157 GTGATACTACCATATGATACTACGCAT 58.378 37.037 3.65 0.00 0.00 4.73
189 191 7.608761 TGTGATACTACCATATGATACTACGCA 59.391 37.037 3.65 0.77 0.00 5.24
190 192 7.982224 TGTGATACTACCATATGATACTACGC 58.018 38.462 3.65 0.00 0.00 4.42
212 214 8.918658 GCATGGCAATAAATAAAGTCATATGTG 58.081 33.333 1.90 0.00 0.00 3.21
213 215 8.640651 TGCATGGCAATAAATAAAGTCATATGT 58.359 29.630 1.90 0.00 34.76 2.29
214 216 9.647797 ATGCATGGCAATAAATAAAGTCATATG 57.352 29.630 0.00 0.00 43.62 1.78
215 217 9.647797 CATGCATGGCAATAAATAAAGTCATAT 57.352 29.630 19.40 0.00 43.62 1.78
216 218 8.858094 TCATGCATGGCAATAAATAAAGTCATA 58.142 29.630 25.97 0.00 43.62 2.15
217 219 7.654520 GTCATGCATGGCAATAAATAAAGTCAT 59.345 33.333 26.04 0.00 43.62 3.06
218 220 6.979817 GTCATGCATGGCAATAAATAAAGTCA 59.020 34.615 26.04 0.00 43.62 3.41
219 221 6.979817 TGTCATGCATGGCAATAAATAAAGTC 59.020 34.615 30.82 0.00 43.62 3.01
220 222 6.757947 GTGTCATGCATGGCAATAAATAAAGT 59.242 34.615 34.01 0.00 44.94 2.66
221 223 6.757478 TGTGTCATGCATGGCAATAAATAAAG 59.243 34.615 34.01 0.00 44.94 1.85
222 224 6.637657 TGTGTCATGCATGGCAATAAATAAA 58.362 32.000 34.01 6.82 44.94 1.40
223 225 6.218108 TGTGTCATGCATGGCAATAAATAA 57.782 33.333 34.01 7.61 44.94 1.40
224 226 5.848833 TGTGTCATGCATGGCAATAAATA 57.151 34.783 34.01 14.13 44.94 1.40
225 227 4.739587 TGTGTCATGCATGGCAATAAAT 57.260 36.364 34.01 0.00 44.94 1.40
226 228 4.739587 ATGTGTCATGCATGGCAATAAA 57.260 36.364 34.01 20.14 44.94 1.40
227 229 4.888823 AGTATGTGTCATGCATGGCAATAA 59.111 37.500 34.01 22.53 44.94 1.40
228 230 4.463070 AGTATGTGTCATGCATGGCAATA 58.537 39.130 34.01 26.44 44.94 1.90
229 231 3.293337 AGTATGTGTCATGCATGGCAAT 58.707 40.909 34.01 27.34 44.94 3.56
230 232 2.725637 AGTATGTGTCATGCATGGCAA 58.274 42.857 34.01 23.37 44.94 4.52
231 233 2.423446 AGTATGTGTCATGCATGGCA 57.577 45.000 29.45 29.45 44.86 4.92
232 234 3.249320 CACTAGTATGTGTCATGCATGGC 59.751 47.826 24.40 24.40 33.61 4.40
233 235 4.445453 ACACTAGTATGTGTCATGCATGG 58.555 43.478 25.97 8.61 46.90 3.66
234 236 5.176406 GCTACACTAGTATGTGTCATGCATG 59.824 44.000 21.07 21.07 46.90 4.06
235 237 5.163416 TGCTACACTAGTATGTGTCATGCAT 60.163 40.000 3.46 0.00 46.90 3.96
236 238 4.159506 TGCTACACTAGTATGTGTCATGCA 59.840 41.667 3.46 10.15 46.90 3.96
237 239 4.682787 TGCTACACTAGTATGTGTCATGC 58.317 43.478 3.46 8.05 46.90 4.06
238 240 7.776933 AAATGCTACACTAGTATGTGTCATG 57.223 36.000 3.46 0.00 46.90 3.07
248 250 9.856488 CCGTATCATAATAAATGCTACACTAGT 57.144 33.333 0.00 0.00 0.00 2.57
249 251 9.856488 ACCGTATCATAATAAATGCTACACTAG 57.144 33.333 0.00 0.00 0.00 2.57
303 305 9.639563 TGAGGTGGCATAGAATTTAATGAAATA 57.360 29.630 0.00 0.00 34.01 1.40
304 306 8.537728 TGAGGTGGCATAGAATTTAATGAAAT 57.462 30.769 0.00 0.00 36.82 2.17
305 307 7.953005 TGAGGTGGCATAGAATTTAATGAAA 57.047 32.000 0.00 0.00 0.00 2.69
306 308 7.779326 TGATGAGGTGGCATAGAATTTAATGAA 59.221 33.333 0.00 0.00 0.00 2.57
307 309 7.289310 TGATGAGGTGGCATAGAATTTAATGA 58.711 34.615 0.00 0.00 0.00 2.57
308 310 7.514784 TGATGAGGTGGCATAGAATTTAATG 57.485 36.000 0.00 0.00 0.00 1.90
309 311 8.537728 TTTGATGAGGTGGCATAGAATTTAAT 57.462 30.769 0.00 0.00 0.00 1.40
310 312 7.615365 ACTTTGATGAGGTGGCATAGAATTTAA 59.385 33.333 0.00 0.00 0.00 1.52
311 313 7.118723 ACTTTGATGAGGTGGCATAGAATTTA 58.881 34.615 0.00 0.00 0.00 1.40
312 314 5.954150 ACTTTGATGAGGTGGCATAGAATTT 59.046 36.000 0.00 0.00 0.00 1.82
313 315 5.513233 ACTTTGATGAGGTGGCATAGAATT 58.487 37.500 0.00 0.00 0.00 2.17
314 316 5.121380 ACTTTGATGAGGTGGCATAGAAT 57.879 39.130 0.00 0.00 0.00 2.40
315 317 4.574674 ACTTTGATGAGGTGGCATAGAA 57.425 40.909 0.00 0.00 0.00 2.10
316 318 4.264253 CAACTTTGATGAGGTGGCATAGA 58.736 43.478 0.00 0.00 30.59 1.98
317 319 3.181493 GCAACTTTGATGAGGTGGCATAG 60.181 47.826 0.00 0.00 34.87 2.23
318 320 2.754552 GCAACTTTGATGAGGTGGCATA 59.245 45.455 0.00 0.00 34.87 3.14
319 321 1.547372 GCAACTTTGATGAGGTGGCAT 59.453 47.619 0.00 0.00 34.87 4.40
320 322 0.961019 GCAACTTTGATGAGGTGGCA 59.039 50.000 0.00 0.00 34.87 4.92
321 323 3.800628 GCAACTTTGATGAGGTGGC 57.199 52.632 0.00 0.00 34.87 5.01
339 341 3.748083 AGTATCATGCATGCCAACTAGG 58.252 45.455 22.25 0.00 41.84 3.02
340 342 4.391216 GCTAGTATCATGCATGCCAACTAG 59.609 45.833 32.38 32.38 37.27 2.57
341 343 4.040829 AGCTAGTATCATGCATGCCAACTA 59.959 41.667 22.25 22.70 0.00 2.24
342 344 3.144506 GCTAGTATCATGCATGCCAACT 58.855 45.455 22.25 22.78 0.00 3.16
343 345 3.144506 AGCTAGTATCATGCATGCCAAC 58.855 45.455 22.25 17.59 0.00 3.77
344 346 3.497103 AGCTAGTATCATGCATGCCAA 57.503 42.857 22.25 5.34 0.00 4.52
345 347 4.223477 TCATAGCTAGTATCATGCATGCCA 59.777 41.667 22.25 8.84 0.00 4.92
346 348 4.763073 TCATAGCTAGTATCATGCATGCC 58.237 43.478 22.25 11.72 0.00 4.40
347 349 7.208777 AGTATCATAGCTAGTATCATGCATGC 58.791 38.462 22.25 11.82 0.00 4.06
348 350 7.866898 GGAGTATCATAGCTAGTATCATGCATG 59.133 40.741 21.07 21.07 36.25 4.06
349 351 7.015098 GGGAGTATCATAGCTAGTATCATGCAT 59.985 40.741 0.00 0.00 36.25 3.96
350 352 6.322456 GGGAGTATCATAGCTAGTATCATGCA 59.678 42.308 0.00 0.00 36.25 3.96
351 353 6.322456 TGGGAGTATCATAGCTAGTATCATGC 59.678 42.308 0.00 0.00 36.25 4.06
352 354 7.888250 TGGGAGTATCATAGCTAGTATCATG 57.112 40.000 0.00 0.00 36.25 3.07
354 356 9.409918 GTAATGGGAGTATCATAGCTAGTATCA 57.590 37.037 0.00 0.00 36.25 2.15
355 357 9.409918 TGTAATGGGAGTATCATAGCTAGTATC 57.590 37.037 0.00 0.00 36.25 2.24
356 358 9.769677 TTGTAATGGGAGTATCATAGCTAGTAT 57.230 33.333 0.00 0.00 36.25 2.12
357 359 9.021807 GTTGTAATGGGAGTATCATAGCTAGTA 57.978 37.037 0.00 0.00 36.25 1.82
358 360 7.309255 CGTTGTAATGGGAGTATCATAGCTAGT 60.309 40.741 0.00 0.00 36.25 2.57
359 361 7.030165 CGTTGTAATGGGAGTATCATAGCTAG 58.970 42.308 0.00 0.00 36.25 3.42
360 362 6.071560 CCGTTGTAATGGGAGTATCATAGCTA 60.072 42.308 0.00 0.00 36.25 3.32
361 363 5.279506 CCGTTGTAATGGGAGTATCATAGCT 60.280 44.000 0.00 0.00 36.25 3.32
362 364 4.929808 CCGTTGTAATGGGAGTATCATAGC 59.070 45.833 0.00 0.00 36.25 2.97
363 365 6.340962 TCCGTTGTAATGGGAGTATCATAG 57.659 41.667 3.19 0.00 36.25 2.23
364 366 6.734502 TTCCGTTGTAATGGGAGTATCATA 57.265 37.500 3.19 0.00 36.25 2.15
365 367 5.623956 TTCCGTTGTAATGGGAGTATCAT 57.376 39.130 3.19 0.00 36.25 2.45
366 368 5.423704 TTTCCGTTGTAATGGGAGTATCA 57.576 39.130 3.19 0.00 36.25 2.15
367 369 6.746745 TTTTTCCGTTGTAATGGGAGTATC 57.253 37.500 3.19 0.00 35.72 2.24
400 402 5.726793 ACTTGGTTTATATGAGACCTGGTCT 59.273 40.000 28.70 28.70 46.42 3.85
401 403 5.817816 CACTTGGTTTATATGAGACCTGGTC 59.182 44.000 19.20 19.20 34.52 4.02
402 404 5.487488 TCACTTGGTTTATATGAGACCTGGT 59.513 40.000 0.00 0.00 34.52 4.00
403 405 5.989477 TCACTTGGTTTATATGAGACCTGG 58.011 41.667 0.00 0.00 34.52 4.45
404 406 6.878317 TCTCACTTGGTTTATATGAGACCTG 58.122 40.000 0.00 2.72 40.59 4.00
408 410 5.163447 CGGGTCTCACTTGGTTTATATGAGA 60.163 44.000 0.00 0.00 42.63 3.27
409 411 5.050490 CGGGTCTCACTTGGTTTATATGAG 58.950 45.833 0.00 0.00 38.51 2.90
410 412 4.468510 ACGGGTCTCACTTGGTTTATATGA 59.531 41.667 0.00 0.00 0.00 2.15
411 413 4.766375 ACGGGTCTCACTTGGTTTATATG 58.234 43.478 0.00 0.00 0.00 1.78
412 414 4.141779 GGACGGGTCTCACTTGGTTTATAT 60.142 45.833 0.00 0.00 0.00 0.86
413 415 3.196254 GGACGGGTCTCACTTGGTTTATA 59.804 47.826 0.00 0.00 0.00 0.98
414 416 2.027469 GGACGGGTCTCACTTGGTTTAT 60.027 50.000 0.00 0.00 0.00 1.40
415 417 1.345415 GGACGGGTCTCACTTGGTTTA 59.655 52.381 0.00 0.00 0.00 2.01
416 418 0.108019 GGACGGGTCTCACTTGGTTT 59.892 55.000 0.00 0.00 0.00 3.27
417 419 0.763223 AGGACGGGTCTCACTTGGTT 60.763 55.000 0.00 0.00 0.00 3.67
418 420 1.152312 AGGACGGGTCTCACTTGGT 60.152 57.895 0.00 0.00 0.00 3.67
419 421 1.185618 TCAGGACGGGTCTCACTTGG 61.186 60.000 0.00 0.00 0.00 3.61
420 422 0.898320 ATCAGGACGGGTCTCACTTG 59.102 55.000 0.00 0.00 0.00 3.16
421 423 0.898320 CATCAGGACGGGTCTCACTT 59.102 55.000 0.00 0.00 0.00 3.16
422 424 0.972983 CCATCAGGACGGGTCTCACT 60.973 60.000 0.00 0.00 36.89 3.41
423 425 0.970937 TCCATCAGGACGGGTCTCAC 60.971 60.000 0.00 0.00 39.61 3.51
424 426 1.386550 TCCATCAGGACGGGTCTCA 59.613 57.895 0.00 0.00 39.61 3.27
425 427 4.356979 TCCATCAGGACGGGTCTC 57.643 61.111 0.00 0.00 39.61 3.36
434 436 1.315690 GCCACATGTCATCCATCAGG 58.684 55.000 0.00 0.00 0.00 3.86
435 437 2.047002 TGCCACATGTCATCCATCAG 57.953 50.000 0.00 0.00 0.00 2.90
436 438 2.740506 ATGCCACATGTCATCCATCA 57.259 45.000 0.00 0.00 0.00 3.07
437 439 2.953648 TGAATGCCACATGTCATCCATC 59.046 45.455 0.00 0.00 0.00 3.51
438 440 3.021177 TGAATGCCACATGTCATCCAT 57.979 42.857 0.00 0.00 0.00 3.41
439 441 2.510928 TGAATGCCACATGTCATCCA 57.489 45.000 0.00 0.00 0.00 3.41
440 442 5.518848 TTTATGAATGCCACATGTCATCC 57.481 39.130 0.00 0.00 32.99 3.51
441 443 6.639686 GTGATTTATGAATGCCACATGTCATC 59.360 38.462 0.00 0.00 32.99 2.92
442 444 6.097129 TGTGATTTATGAATGCCACATGTCAT 59.903 34.615 0.00 0.00 29.85 3.06
443 445 5.418209 TGTGATTTATGAATGCCACATGTCA 59.582 36.000 0.00 0.00 29.85 3.58
444 446 5.893687 TGTGATTTATGAATGCCACATGTC 58.106 37.500 0.00 0.00 29.85 3.06
445 447 5.918426 TGTGATTTATGAATGCCACATGT 57.082 34.783 0.00 0.00 29.85 3.21
446 448 6.237996 GCTTTGTGATTTATGAATGCCACATG 60.238 38.462 5.82 0.00 32.98 3.21
447 449 5.813672 GCTTTGTGATTTATGAATGCCACAT 59.186 36.000 5.82 0.00 32.98 3.21
448 450 5.170021 GCTTTGTGATTTATGAATGCCACA 58.830 37.500 1.88 1.88 31.76 4.17
449 451 5.170021 TGCTTTGTGATTTATGAATGCCAC 58.830 37.500 0.00 0.00 0.00 5.01
450 452 5.402997 TGCTTTGTGATTTATGAATGCCA 57.597 34.783 0.00 0.00 0.00 4.92
451 453 9.695526 TTATATGCTTTGTGATTTATGAATGCC 57.304 29.630 0.00 0.00 0.00 4.40
459 461 9.507329 GGGAGAGATTATATGCTTTGTGATTTA 57.493 33.333 0.00 0.00 0.00 1.40
460 462 7.449704 GGGGAGAGATTATATGCTTTGTGATTT 59.550 37.037 0.00 0.00 0.00 2.17
461 463 6.944862 GGGGAGAGATTATATGCTTTGTGATT 59.055 38.462 0.00 0.00 0.00 2.57
462 464 6.479884 GGGGAGAGATTATATGCTTTGTGAT 58.520 40.000 0.00 0.00 0.00 3.06
463 465 5.221925 GGGGGAGAGATTATATGCTTTGTGA 60.222 44.000 0.00 0.00 0.00 3.58
464 466 5.006386 GGGGGAGAGATTATATGCTTTGTG 58.994 45.833 0.00 0.00 0.00 3.33
465 467 5.248380 GGGGGAGAGATTATATGCTTTGT 57.752 43.478 0.00 0.00 0.00 2.83
502 504 2.242408 AAAGCATCCATCCCACCCCC 62.242 60.000 0.00 0.00 0.00 5.40
503 505 1.044790 CAAAGCATCCATCCCACCCC 61.045 60.000 0.00 0.00 0.00 4.95
504 506 0.324645 ACAAAGCATCCATCCCACCC 60.325 55.000 0.00 0.00 0.00 4.61
505 507 0.819582 CACAAAGCATCCATCCCACC 59.180 55.000 0.00 0.00 0.00 4.61
506 508 1.838112 TCACAAAGCATCCATCCCAC 58.162 50.000 0.00 0.00 0.00 4.61
507 509 2.832643 ATCACAAAGCATCCATCCCA 57.167 45.000 0.00 0.00 0.00 4.37
508 510 3.196254 ACAAATCACAAAGCATCCATCCC 59.804 43.478 0.00 0.00 0.00 3.85
509 511 4.082081 TCACAAATCACAAAGCATCCATCC 60.082 41.667 0.00 0.00 0.00 3.51
510 512 5.063180 TCACAAATCACAAAGCATCCATC 57.937 39.130 0.00 0.00 0.00 3.51
511 513 5.471556 TTCACAAATCACAAAGCATCCAT 57.528 34.783 0.00 0.00 0.00 3.41
512 514 4.933505 TTCACAAATCACAAAGCATCCA 57.066 36.364 0.00 0.00 0.00 3.41
513 515 5.346822 GTCATTCACAAATCACAAAGCATCC 59.653 40.000 0.00 0.00 0.00 3.51
514 516 5.921976 TGTCATTCACAAATCACAAAGCATC 59.078 36.000 0.00 0.00 29.30 3.91
515 517 5.693104 GTGTCATTCACAAATCACAAAGCAT 59.307 36.000 0.00 0.00 45.51 3.79
516 518 5.042593 GTGTCATTCACAAATCACAAAGCA 58.957 37.500 0.00 0.00 45.51 3.91
517 519 4.146961 CGTGTCATTCACAAATCACAAAGC 59.853 41.667 0.00 0.00 46.44 3.51
518 520 5.171874 CACGTGTCATTCACAAATCACAAAG 59.828 40.000 7.58 0.00 46.44 2.77
519 521 5.033507 CACGTGTCATTCACAAATCACAAA 58.966 37.500 7.58 0.00 46.44 2.83
520 522 4.095632 ACACGTGTCATTCACAAATCACAA 59.904 37.500 17.22 0.00 46.44 3.33
521 523 3.625313 ACACGTGTCATTCACAAATCACA 59.375 39.130 17.22 0.00 46.44 3.58
522 524 4.209452 ACACGTGTCATTCACAAATCAC 57.791 40.909 17.22 0.00 46.44 3.06
523 525 4.466567 GACACGTGTCATTCACAAATCA 57.533 40.909 37.16 0.00 46.44 2.57
535 537 2.654749 TCTGATGGATGACACGTGTC 57.345 50.000 36.01 36.01 44.97 3.67
536 538 3.264947 CATTCTGATGGATGACACGTGT 58.735 45.455 23.64 23.64 0.00 4.49
537 539 3.938778 CATTCTGATGGATGACACGTG 57.061 47.619 15.48 15.48 0.00 4.49
548 550 2.238144 ACAGGTGAGACCCATTCTGATG 59.762 50.000 0.00 0.00 39.75 3.07
549 551 2.555664 ACAGGTGAGACCCATTCTGAT 58.444 47.619 0.00 0.00 39.75 2.90
550 552 2.030027 ACAGGTGAGACCCATTCTGA 57.970 50.000 0.00 0.00 39.75 3.27
551 553 2.867109 AACAGGTGAGACCCATTCTG 57.133 50.000 0.00 0.00 39.75 3.02
552 554 4.080299 GGATTAACAGGTGAGACCCATTCT 60.080 45.833 0.00 0.00 39.75 2.40
553 555 4.200092 GGATTAACAGGTGAGACCCATTC 58.800 47.826 0.00 0.00 39.75 2.67
554 556 3.591527 TGGATTAACAGGTGAGACCCATT 59.408 43.478 0.00 0.00 39.75 3.16
555 557 3.189606 TGGATTAACAGGTGAGACCCAT 58.810 45.455 0.00 0.00 39.75 4.00
556 558 2.626785 TGGATTAACAGGTGAGACCCA 58.373 47.619 0.00 0.00 39.75 4.51
557 559 3.199946 TCATGGATTAACAGGTGAGACCC 59.800 47.826 0.00 0.00 39.75 4.46
558 560 4.162320 TCTCATGGATTAACAGGTGAGACC 59.838 45.833 7.84 0.00 37.69 3.85
559 561 5.344743 TCTCATGGATTAACAGGTGAGAC 57.655 43.478 7.84 0.00 37.69 3.36
560 562 4.162320 GGTCTCATGGATTAACAGGTGAGA 59.838 45.833 7.84 7.84 39.59 3.27
561 563 4.163078 AGGTCTCATGGATTAACAGGTGAG 59.837 45.833 0.00 0.00 35.58 3.51
562 564 4.080919 CAGGTCTCATGGATTAACAGGTGA 60.081 45.833 0.00 0.00 0.00 4.02
563 565 4.194640 CAGGTCTCATGGATTAACAGGTG 58.805 47.826 0.00 0.00 0.00 4.00
564 566 3.200825 CCAGGTCTCATGGATTAACAGGT 59.799 47.826 0.00 0.00 40.51 4.00
565 567 3.200825 ACCAGGTCTCATGGATTAACAGG 59.799 47.826 7.43 0.00 40.51 4.00
566 568 4.194640 CACCAGGTCTCATGGATTAACAG 58.805 47.826 7.43 0.00 40.51 3.16
567 569 3.587061 ACACCAGGTCTCATGGATTAACA 59.413 43.478 7.43 0.00 40.51 2.41
568 570 4.192317 GACACCAGGTCTCATGGATTAAC 58.808 47.826 7.43 0.00 43.46 2.01
569 571 4.487714 GACACCAGGTCTCATGGATTAA 57.512 45.455 7.43 0.00 43.46 1.40
618 620 7.865706 ATAGGAAGATACGCAGTTGATTTTT 57.134 32.000 0.00 0.00 37.78 1.94
624 626 9.509855 GAATCTATATAGGAAGATACGCAGTTG 57.490 37.037 9.89 0.00 45.11 3.16
625 627 9.244292 TGAATCTATATAGGAAGATACGCAGTT 57.756 33.333 9.89 0.00 45.11 3.16
677 948 4.127566 TGGTTAGAAGGTTACCGTATGC 57.872 45.455 0.00 0.00 34.62 3.14
679 950 8.026396 ACAATATGGTTAGAAGGTTACCGTAT 57.974 34.615 0.00 0.00 42.91 3.06
682 953 6.596497 ACAACAATATGGTTAGAAGGTTACCG 59.404 38.462 0.00 0.00 34.62 4.02
685 956 9.575868 TTGAACAACAATATGGTTAGAAGGTTA 57.424 29.630 0.00 0.00 33.18 2.85
694 967 6.627395 TTCGACTTGAACAACAATATGGTT 57.373 33.333 0.00 0.00 37.88 3.67
728 1001 6.202516 TGTTCTTTTGTTTCTTGTACCTGG 57.797 37.500 0.00 0.00 0.00 4.45
729 1002 6.253512 GCTTGTTCTTTTGTTTCTTGTACCTG 59.746 38.462 0.00 0.00 0.00 4.00
730 1003 6.071616 TGCTTGTTCTTTTGTTTCTTGTACCT 60.072 34.615 0.00 0.00 0.00 3.08
731 1004 6.096695 TGCTTGTTCTTTTGTTTCTTGTACC 58.903 36.000 0.00 0.00 0.00 3.34
732 1005 7.411480 GGTTGCTTGTTCTTTTGTTTCTTGTAC 60.411 37.037 0.00 0.00 0.00 2.90
733 1006 6.588373 GGTTGCTTGTTCTTTTGTTTCTTGTA 59.412 34.615 0.00 0.00 0.00 2.41
734 1007 5.408299 GGTTGCTTGTTCTTTTGTTTCTTGT 59.592 36.000 0.00 0.00 0.00 3.16
735 1008 5.407995 TGGTTGCTTGTTCTTTTGTTTCTTG 59.592 36.000 0.00 0.00 0.00 3.02
737 1010 4.929211 GTGGTTGCTTGTTCTTTTGTTTCT 59.071 37.500 0.00 0.00 0.00 2.52
798 1112 5.016831 ACTTTGTCTTCTTTCCCTTTGTGT 58.983 37.500 0.00 0.00 0.00 3.72
805 1119 6.978659 CAGGTTAAAACTTTGTCTTCTTTCCC 59.021 38.462 0.00 0.00 0.00 3.97
806 1120 7.768240 TCAGGTTAAAACTTTGTCTTCTTTCC 58.232 34.615 0.00 0.00 0.00 3.13
807 1121 9.803315 ATTCAGGTTAAAACTTTGTCTTCTTTC 57.197 29.630 0.00 0.00 0.00 2.62
808 1122 9.586435 CATTCAGGTTAAAACTTTGTCTTCTTT 57.414 29.630 0.00 0.00 0.00 2.52
809 1123 8.197439 CCATTCAGGTTAAAACTTTGTCTTCTT 58.803 33.333 0.00 0.00 0.00 2.52
810 1124 7.684428 GCCATTCAGGTTAAAACTTTGTCTTCT 60.684 37.037 0.00 0.00 40.61 2.85
811 1125 6.420903 GCCATTCAGGTTAAAACTTTGTCTTC 59.579 38.462 0.00 0.00 40.61 2.87
812 1126 6.127196 TGCCATTCAGGTTAAAACTTTGTCTT 60.127 34.615 0.00 0.00 40.61 3.01
813 1127 5.362430 TGCCATTCAGGTTAAAACTTTGTCT 59.638 36.000 0.00 0.00 40.61 3.41
814 1128 5.596845 TGCCATTCAGGTTAAAACTTTGTC 58.403 37.500 0.00 0.00 40.61 3.18
852 1166 1.677633 CTGCCCTTGGGGTTTACCG 60.678 63.158 7.91 0.00 46.51 4.02
893 1207 2.565391 TGTCGAATGTGATAGGGTGTGT 59.435 45.455 0.00 0.00 0.00 3.72
965 1279 2.930019 TGGGAGTGAGGGCAGTGG 60.930 66.667 0.00 0.00 0.00 4.00
966 1280 2.348998 GTGGGAGTGAGGGCAGTG 59.651 66.667 0.00 0.00 0.00 3.66
967 1281 3.314331 CGTGGGAGTGAGGGCAGT 61.314 66.667 0.00 0.00 0.00 4.40
968 1282 4.767255 GCGTGGGAGTGAGGGCAG 62.767 72.222 0.00 0.00 0.00 4.85
972 1286 4.436998 GTCGGCGTGGGAGTGAGG 62.437 72.222 6.85 0.00 0.00 3.86
1398 1728 2.794631 CGTGAAGTTGAAGTTGTTGGCC 60.795 50.000 0.00 0.00 0.00 5.36
1479 1809 1.000233 CGTACACGGTGGACTTGACG 61.000 60.000 20.54 11.44 35.37 4.35
1689 2031 0.832135 AGTTCTTCCTCTGGTCGGCA 60.832 55.000 0.00 0.00 0.00 5.69
1819 2164 0.700564 ACCTCCCGTACAGGTACAGA 59.299 55.000 9.97 5.11 42.91 3.41
1823 2168 0.612732 CACCACCTCCCGTACAGGTA 60.613 60.000 3.20 0.00 42.85 3.08
1824 2169 1.911766 CACCACCTCCCGTACAGGT 60.912 63.158 0.00 0.00 45.89 4.00
1825 2170 2.656069 CCACCACCTCCCGTACAGG 61.656 68.421 0.00 0.00 40.63 4.00
1918 2263 5.948992 ATGTGGCAAGAAAGAGTAAAGAC 57.051 39.130 0.00 0.00 0.00 3.01
1965 2310 8.791327 TGAGATTCAAACTGCTTTATCACATA 57.209 30.769 0.00 0.00 0.00 2.29
2021 2366 0.240945 GACCCCGTTGAAACATGCAG 59.759 55.000 0.00 0.00 0.00 4.41
2057 2402 3.594134 AGCAAGGATTCTCAGAAGAACG 58.406 45.455 0.00 0.00 44.13 3.95
2163 2517 0.383949 GCCGGAAGAAAACACTGCAA 59.616 50.000 5.05 0.00 0.00 4.08
2364 2756 7.039882 TCTCAAACGTACTCAAAACTCTTCTT 58.960 34.615 0.00 0.00 0.00 2.52
2424 2816 5.105064 GGCGGGTATTCTAGCATCCTTTATA 60.105 44.000 0.00 0.00 0.00 0.98
2425 2817 4.323562 GGCGGGTATTCTAGCATCCTTTAT 60.324 45.833 0.00 0.00 0.00 1.40
2426 2818 3.007614 GGCGGGTATTCTAGCATCCTTTA 59.992 47.826 0.00 0.00 0.00 1.85
2427 2819 2.224548 GGCGGGTATTCTAGCATCCTTT 60.225 50.000 0.00 0.00 0.00 3.11
2428 2820 1.348036 GGCGGGTATTCTAGCATCCTT 59.652 52.381 0.00 0.00 0.00 3.36
2429 2821 0.977395 GGCGGGTATTCTAGCATCCT 59.023 55.000 0.00 0.00 0.00 3.24
2430 2822 0.977395 AGGCGGGTATTCTAGCATCC 59.023 55.000 0.00 0.00 0.00 3.51
2431 2823 2.841442 AAGGCGGGTATTCTAGCATC 57.159 50.000 0.00 0.00 0.00 3.91
2432 2824 3.214328 CAAAAGGCGGGTATTCTAGCAT 58.786 45.455 0.00 0.00 0.00 3.79
2433 2825 2.639065 CAAAAGGCGGGTATTCTAGCA 58.361 47.619 0.00 0.00 0.00 3.49
2434 2826 1.947456 CCAAAAGGCGGGTATTCTAGC 59.053 52.381 0.00 0.00 0.00 3.42
2435 2827 3.553828 TCCAAAAGGCGGGTATTCTAG 57.446 47.619 0.00 0.00 0.00 2.43
2436 2828 3.264964 ACTTCCAAAAGGCGGGTATTCTA 59.735 43.478 0.00 0.00 36.78 2.10
2437 2829 2.041216 ACTTCCAAAAGGCGGGTATTCT 59.959 45.455 0.00 0.00 36.78 2.40
2438 2830 2.422479 GACTTCCAAAAGGCGGGTATTC 59.578 50.000 0.00 0.00 36.78 1.75
2439 2831 2.041216 AGACTTCCAAAAGGCGGGTATT 59.959 45.455 0.00 0.00 45.96 1.89
2440 2832 1.633945 AGACTTCCAAAAGGCGGGTAT 59.366 47.619 0.00 0.00 45.96 2.73
2441 2833 1.002773 GAGACTTCCAAAAGGCGGGTA 59.997 52.381 0.00 0.00 45.96 3.69
2442 2834 0.250770 GAGACTTCCAAAAGGCGGGT 60.251 55.000 0.00 0.00 45.96 5.28
2443 2835 0.960861 GGAGACTTCCAAAAGGCGGG 60.961 60.000 0.00 0.00 45.96 6.13
2444 2836 1.298859 CGGAGACTTCCAAAAGGCGG 61.299 60.000 0.00 0.00 45.96 6.13
2445 2837 0.602905 ACGGAGACTTCCAAAAGGCG 60.603 55.000 0.00 0.00 45.96 5.52
2446 2838 0.875059 CACGGAGACTTCCAAAAGGC 59.125 55.000 0.00 0.00 44.26 4.35
2447 2839 1.523758 CCACGGAGACTTCCAAAAGG 58.476 55.000 0.00 0.00 44.26 3.11
2448 2840 1.523758 CCCACGGAGACTTCCAAAAG 58.476 55.000 0.00 0.00 44.26 2.27
2449 2841 0.536460 GCCCACGGAGACTTCCAAAA 60.536 55.000 0.00 0.00 44.26 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.