Multiple sequence alignment - TraesCS2B01G370700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G370700 chr2B 100.000 2663 0 0 1 2663 528969112 528966450 0 4918
1 TraesCS2B01G370700 chr2A 88.546 1362 72 25 587 1905 593488720 593487400 0 1574
2 TraesCS2B01G370700 chr2A 90.816 490 35 6 107 588 593489445 593488958 0 647
3 TraesCS2B01G370700 chr2D 91.414 1153 61 13 740 1878 449524481 449525609 0 1546
4 TraesCS2B01G370700 chr2D 96.510 573 19 1 2092 2663 552601454 552600882 0 946
5 TraesCS2B01G370700 chr2D 91.250 640 50 3 107 741 449523739 449524377 0 867
6 TraesCS2B01G370700 chr6B 96.859 573 16 2 2092 2663 676498471 676497900 0 957
7 TraesCS2B01G370700 chr7D 96.075 586 20 3 2080 2663 411029552 411030136 0 952
8 TraesCS2B01G370700 chr7D 96.516 574 18 2 2092 2663 576947340 576947913 0 948
9 TraesCS2B01G370700 chr5D 96.516 574 18 2 2092 2663 560380538 560381111 0 948
10 TraesCS2B01G370700 chr5D 96.341 574 19 2 2092 2663 333368708 333369281 0 942
11 TraesCS2B01G370700 chr1D 96.335 573 20 1 2092 2663 224690 225262 0 941
12 TraesCS2B01G370700 chr3D 96.167 574 20 2 2092 2663 588339344 588339917 0 937
13 TraesCS2B01G370700 chr1A 95.848 578 21 3 2089 2663 25549926 25550503 0 931


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G370700 chr2B 528966450 528969112 2662 True 4918.0 4918 100.000 1 2663 1 chr2B.!!$R1 2662
1 TraesCS2B01G370700 chr2A 593487400 593489445 2045 True 1110.5 1574 89.681 107 1905 2 chr2A.!!$R1 1798
2 TraesCS2B01G370700 chr2D 449523739 449525609 1870 False 1206.5 1546 91.332 107 1878 2 chr2D.!!$F1 1771
3 TraesCS2B01G370700 chr2D 552600882 552601454 572 True 946.0 946 96.510 2092 2663 1 chr2D.!!$R1 571
4 TraesCS2B01G370700 chr6B 676497900 676498471 571 True 957.0 957 96.859 2092 2663 1 chr6B.!!$R1 571
5 TraesCS2B01G370700 chr7D 411029552 411030136 584 False 952.0 952 96.075 2080 2663 1 chr7D.!!$F1 583
6 TraesCS2B01G370700 chr7D 576947340 576947913 573 False 948.0 948 96.516 2092 2663 1 chr7D.!!$F2 571
7 TraesCS2B01G370700 chr5D 560380538 560381111 573 False 948.0 948 96.516 2092 2663 1 chr5D.!!$F2 571
8 TraesCS2B01G370700 chr5D 333368708 333369281 573 False 942.0 942 96.341 2092 2663 1 chr5D.!!$F1 571
9 TraesCS2B01G370700 chr1D 224690 225262 572 False 941.0 941 96.335 2092 2663 1 chr1D.!!$F1 571
10 TraesCS2B01G370700 chr3D 588339344 588339917 573 False 937.0 937 96.167 2092 2663 1 chr3D.!!$F1 571
11 TraesCS2B01G370700 chr1A 25549926 25550503 577 False 931.0 931 95.848 2089 2663 1 chr1A.!!$F1 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
564 577 0.179137 GCCCGCCAAATTAGCTTGAC 60.179 55.0 0.0 0.0 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1954 2370 0.105224 TCGAGGGCGTTTTCTCAACA 59.895 50.0 0.0 0.0 38.98 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.630676 CAAACATCCAATTTCGTATTGGTG 57.369 37.500 22.45 20.83 46.47 4.17
24 25 5.975693 AACATCCAATTTCGTATTGGTGT 57.024 34.783 22.45 21.24 46.47 4.16
25 26 5.975693 ACATCCAATTTCGTATTGGTGTT 57.024 34.783 22.45 12.02 46.47 3.32
26 27 6.339587 ACATCCAATTTCGTATTGGTGTTT 57.660 33.333 22.45 10.18 46.47 2.83
27 28 6.155827 ACATCCAATTTCGTATTGGTGTTTG 58.844 36.000 22.45 18.52 46.47 2.93
28 29 5.776173 TCCAATTTCGTATTGGTGTTTGT 57.224 34.783 22.45 0.00 46.47 2.83
29 30 6.879276 TCCAATTTCGTATTGGTGTTTGTA 57.121 33.333 22.45 7.27 46.47 2.41
30 31 6.670233 TCCAATTTCGTATTGGTGTTTGTAC 58.330 36.000 22.45 0.00 46.47 2.90
31 32 5.859648 CCAATTTCGTATTGGTGTTTGTACC 59.140 40.000 18.07 0.00 42.63 3.34
44 45 6.924060 TGGTGTTTGTACCATTTTTATTTCCG 59.076 34.615 0.00 0.00 45.46 4.30
45 46 6.924612 GGTGTTTGTACCATTTTTATTTCCGT 59.075 34.615 0.00 0.00 40.54 4.69
46 47 7.115236 GGTGTTTGTACCATTTTTATTTCCGTC 59.885 37.037 0.00 0.00 40.54 4.79
47 48 7.115236 GTGTTTGTACCATTTTTATTTCCGTCC 59.885 37.037 0.00 0.00 0.00 4.79
48 49 6.896021 TTGTACCATTTTTATTTCCGTCCA 57.104 33.333 0.00 0.00 0.00 4.02
49 50 7.469537 TTGTACCATTTTTATTTCCGTCCAT 57.530 32.000 0.00 0.00 0.00 3.41
50 51 8.577048 TTGTACCATTTTTATTTCCGTCCATA 57.423 30.769 0.00 0.00 0.00 2.74
51 52 8.754991 TGTACCATTTTTATTTCCGTCCATAT 57.245 30.769 0.00 0.00 0.00 1.78
52 53 9.191479 TGTACCATTTTTATTTCCGTCCATATT 57.809 29.630 0.00 0.00 0.00 1.28
54 55 8.940768 ACCATTTTTATTTCCGTCCATATTTG 57.059 30.769 0.00 0.00 0.00 2.32
55 56 8.536175 ACCATTTTTATTTCCGTCCATATTTGT 58.464 29.630 0.00 0.00 0.00 2.83
56 57 9.377312 CCATTTTTATTTCCGTCCATATTTGTT 57.623 29.630 0.00 0.00 0.00 2.83
62 63 6.411630 TTTCCGTCCATATTTGTTTCTACG 57.588 37.500 0.00 0.00 0.00 3.51
63 64 4.789095 CCGTCCATATTTGTTTCTACGG 57.211 45.455 0.00 0.00 42.12 4.02
64 65 4.081531 TCCGTCCATATTTGTTTCTACGGT 60.082 41.667 10.02 0.00 46.50 4.83
65 66 4.632688 CCGTCCATATTTGTTTCTACGGTT 59.367 41.667 0.00 0.00 42.68 4.44
66 67 5.122711 CCGTCCATATTTGTTTCTACGGTTT 59.877 40.000 0.00 0.00 42.68 3.27
67 68 6.348704 CCGTCCATATTTGTTTCTACGGTTTT 60.349 38.462 0.00 0.00 42.68 2.43
68 69 6.739550 CGTCCATATTTGTTTCTACGGTTTTC 59.260 38.462 0.00 0.00 0.00 2.29
69 70 7.360607 CGTCCATATTTGTTTCTACGGTTTTCT 60.361 37.037 0.00 0.00 0.00 2.52
70 71 8.938906 GTCCATATTTGTTTCTACGGTTTTCTA 58.061 33.333 0.00 0.00 0.00 2.10
71 72 9.504708 TCCATATTTGTTTCTACGGTTTTCTAA 57.495 29.630 0.00 0.00 0.00 2.10
153 154 2.024655 ACCCCTACTCATCGAACCACTA 60.025 50.000 0.00 0.00 0.00 2.74
256 257 7.015877 CACGCATAATTGAGATCTCATCATTG 58.984 38.462 25.64 19.87 39.64 2.82
263 268 6.593268 TTGAGATCTCATCATTGGCAAAAA 57.407 33.333 25.64 3.56 39.64 1.94
291 296 3.407424 TTAAGATCTCATCATGGGGCG 57.593 47.619 0.00 0.00 0.00 6.13
313 318 1.009829 GCTAATCCACCACTTCTGCG 58.990 55.000 0.00 0.00 0.00 5.18
319 324 0.817634 CCACCACTTCTGCGGAACAA 60.818 55.000 3.13 0.00 0.00 2.83
354 359 3.264193 ACCTCTGCCATCACTATTCACAA 59.736 43.478 0.00 0.00 0.00 3.33
380 385 7.038160 ACACTAAAACCTTTTAAACCCAACCTT 60.038 33.333 0.00 0.00 32.73 3.50
385 390 5.212745 ACCTTTTAAACCCAACCTTCATCA 58.787 37.500 0.00 0.00 0.00 3.07
396 401 4.320494 CCAACCTTCATCAAAGTTTCTCCG 60.320 45.833 0.00 0.00 32.69 4.63
467 480 2.397044 TGGTTTTTGAGAGGGCCAAT 57.603 45.000 6.18 0.00 0.00 3.16
482 495 0.999406 CCAATACCTCGCGAACTGTG 59.001 55.000 11.33 4.89 0.00 3.66
489 502 2.811317 CGCGAACTGTGCCTCTCC 60.811 66.667 0.00 0.00 0.00 3.71
511 524 1.615919 CCCGGCAGTTCCAAAATAGGT 60.616 52.381 0.00 0.00 34.01 3.08
515 528 3.443681 CGGCAGTTCCAAAATAGGTGATT 59.556 43.478 0.00 0.00 34.01 2.57
518 531 5.402398 GCAGTTCCAAAATAGGTGATTCAC 58.598 41.667 8.34 8.34 0.00 3.18
526 539 6.261826 CCAAAATAGGTGATTCACTGATCCTC 59.738 42.308 16.02 0.00 34.40 3.71
564 577 0.179137 GCCCGCCAAATTAGCTTGAC 60.179 55.000 0.00 0.00 0.00 3.18
595 847 9.405587 CACATTCGATTTTTGTATAGGTGTTTT 57.594 29.630 0.00 0.00 0.00 2.43
618 870 7.889873 TTCACCATATTTATTTCCGTCCATT 57.110 32.000 0.00 0.00 0.00 3.16
696 948 8.405418 TGTAGTAGTAACACTCAGTTTCATCT 57.595 34.615 0.00 0.00 41.64 2.90
723 976 2.435203 ATCCCTACCCCTAATCACCC 57.565 55.000 0.00 0.00 0.00 4.61
737 990 0.965866 TCACCCAGCCACTCTCGTAG 60.966 60.000 0.00 0.00 0.00 3.51
772 1130 4.184629 GAGTAGTGAAGGGTATGCACAAG 58.815 47.826 0.00 0.00 35.08 3.16
1128 1530 4.856801 ATCACCGGCCGATGCACC 62.857 66.667 30.73 0.00 40.13 5.01
1198 1600 1.883021 CCGAGGCGCAAAAAGGATT 59.117 52.632 10.83 0.00 0.00 3.01
1379 1787 4.832608 GGTCGGAGCGGCGGAATT 62.833 66.667 9.78 0.00 29.52 2.17
1392 1800 1.817209 GGAATTCTCCGGCGACTCT 59.183 57.895 9.30 0.00 30.03 3.24
1532 1940 4.554363 CGCGGACAGTCGGCTAGG 62.554 72.222 25.63 10.80 40.09 3.02
1540 1948 2.060980 AGTCGGCTAGGCAGGAAGG 61.061 63.158 17.45 0.00 0.00 3.46
1541 1949 3.470888 TCGGCTAGGCAGGAAGGC 61.471 66.667 17.45 0.00 44.61 4.35
1664 2072 0.242555 CCACCCGTGGCATTGTAAAC 59.757 55.000 0.00 0.00 44.73 2.01
1694 2102 5.485353 TGTGAGGAAGGTCATCTGATTACTT 59.515 40.000 2.34 0.92 0.00 2.24
1720 2128 5.535030 AGGATTAGTGAAACCAAAGTGGAAC 59.465 40.000 0.18 0.00 40.96 3.62
1756 2164 3.433306 TCACATTACCCTTGGTTGAGG 57.567 47.619 0.00 0.00 37.09 3.86
1772 2180 1.209504 TGAGGGTGTGGAATCGGATTC 59.790 52.381 20.01 20.01 38.55 2.52
1781 2189 5.050091 GTGTGGAATCGGATTCATATGTGTC 60.050 44.000 26.93 11.32 41.03 3.67
1793 2209 8.396390 GGATTCATATGTGTCTATCATCATTGC 58.604 37.037 1.90 0.00 0.00 3.56
1819 2235 4.517075 TGTCCTCGTTTCATGTGCAAAATA 59.483 37.500 0.00 0.00 0.00 1.40
1837 2253 8.215899 GCAAAATACTTGCGGATATTTCATAC 57.784 34.615 0.00 0.00 35.58 2.39
1838 2254 7.059488 GCAAAATACTTGCGGATATTTCATACG 59.941 37.037 0.00 0.00 35.58 3.06
1839 2255 7.724305 AAATACTTGCGGATATTTCATACGT 57.276 32.000 0.00 0.00 0.00 3.57
1840 2256 8.821147 AAATACTTGCGGATATTTCATACGTA 57.179 30.769 0.00 0.00 0.00 3.57
1848 2264 8.588789 TGCGGATATTTCATACGTATTTATTCG 58.411 33.333 5.03 11.72 0.00 3.34
1888 2304 0.175073 ACGGGTGAATCGTAGGCTTC 59.825 55.000 0.00 0.00 39.22 3.86
1889 2305 0.529992 CGGGTGAATCGTAGGCTTCC 60.530 60.000 0.00 0.00 0.00 3.46
1894 2310 3.756963 GGTGAATCGTAGGCTTCCTTTTT 59.243 43.478 0.00 0.00 34.61 1.94
1925 2341 7.749539 AAATAAAAATGTACAATAGGCACGC 57.250 32.000 0.00 0.00 0.00 5.34
1926 2342 4.775058 AAAAATGTACAATAGGCACGCA 57.225 36.364 0.00 0.00 0.00 5.24
1927 2343 4.981806 AAAATGTACAATAGGCACGCAT 57.018 36.364 0.00 0.00 0.00 4.73
1928 2344 3.969117 AATGTACAATAGGCACGCATG 57.031 42.857 0.00 0.00 0.00 4.06
1929 2345 2.682155 TGTACAATAGGCACGCATGA 57.318 45.000 0.00 0.00 0.00 3.07
1930 2346 2.276201 TGTACAATAGGCACGCATGAC 58.724 47.619 0.00 0.00 0.00 3.06
1931 2347 2.276201 GTACAATAGGCACGCATGACA 58.724 47.619 0.00 0.00 35.60 3.58
1932 2348 1.819928 ACAATAGGCACGCATGACAA 58.180 45.000 0.00 0.00 35.60 3.18
1933 2349 1.468520 ACAATAGGCACGCATGACAAC 59.531 47.619 0.00 0.00 35.60 3.32
1934 2350 1.739466 CAATAGGCACGCATGACAACT 59.261 47.619 0.00 0.00 35.60 3.16
1935 2351 2.113860 ATAGGCACGCATGACAACTT 57.886 45.000 0.00 0.00 35.60 2.66
1936 2352 1.438651 TAGGCACGCATGACAACTTC 58.561 50.000 0.00 0.00 35.60 3.01
1937 2353 0.250467 AGGCACGCATGACAACTTCT 60.250 50.000 0.00 0.00 35.60 2.85
1938 2354 0.593128 GGCACGCATGACAACTTCTT 59.407 50.000 0.00 0.00 32.03 2.52
1939 2355 1.400242 GGCACGCATGACAACTTCTTC 60.400 52.381 0.00 0.00 32.03 2.87
1940 2356 1.264020 GCACGCATGACAACTTCTTCA 59.736 47.619 0.00 0.00 0.00 3.02
1941 2357 2.663879 GCACGCATGACAACTTCTTCAG 60.664 50.000 0.00 0.00 0.00 3.02
1942 2358 2.545526 CACGCATGACAACTTCTTCAGT 59.454 45.455 0.00 0.00 37.30 3.41
1944 2360 4.211164 CACGCATGACAACTTCTTCAGTTA 59.789 41.667 0.00 0.00 44.60 2.24
1945 2361 4.449068 ACGCATGACAACTTCTTCAGTTAG 59.551 41.667 0.00 0.00 44.60 2.34
1946 2362 4.449068 CGCATGACAACTTCTTCAGTTAGT 59.551 41.667 0.00 0.00 44.60 2.24
1947 2363 5.050091 CGCATGACAACTTCTTCAGTTAGTT 60.050 40.000 0.00 0.00 44.60 2.24
1948 2364 6.145534 CGCATGACAACTTCTTCAGTTAGTTA 59.854 38.462 0.00 0.00 44.60 2.24
1949 2365 7.513968 GCATGACAACTTCTTCAGTTAGTTAG 58.486 38.462 0.00 0.00 44.60 2.34
1950 2366 7.171678 GCATGACAACTTCTTCAGTTAGTTAGT 59.828 37.037 0.00 0.00 44.60 2.24
1951 2367 9.046296 CATGACAACTTCTTCAGTTAGTTAGTT 57.954 33.333 0.00 0.00 44.60 2.24
1952 2368 9.614792 ATGACAACTTCTTCAGTTAGTTAGTTT 57.385 29.630 0.00 0.00 44.60 2.66
1953 2369 9.444600 TGACAACTTCTTCAGTTAGTTAGTTTT 57.555 29.630 0.00 0.00 44.60 2.43
1961 2377 9.661563 TCTTCAGTTAGTTAGTTTTTGTTGAGA 57.338 29.630 0.00 0.00 0.00 3.27
1966 2382 9.550811 AGTTAGTTAGTTTTTGTTGAGAAAACG 57.449 29.630 6.77 0.00 46.38 3.60
1967 2383 6.864560 AGTTAGTTTTTGTTGAGAAAACGC 57.135 33.333 6.77 3.20 46.38 4.84
1968 2384 5.803461 AGTTAGTTTTTGTTGAGAAAACGCC 59.197 36.000 6.77 1.10 46.38 5.68
1969 2385 3.517602 AGTTTTTGTTGAGAAAACGCCC 58.482 40.909 6.77 0.00 46.38 6.13
1970 2386 3.194755 AGTTTTTGTTGAGAAAACGCCCT 59.805 39.130 6.77 0.00 46.38 5.19
1971 2387 3.430333 TTTTGTTGAGAAAACGCCCTC 57.570 42.857 0.00 0.00 0.00 4.30
1972 2388 0.941542 TTGTTGAGAAAACGCCCTCG 59.058 50.000 0.00 0.00 42.43 4.63
1973 2389 0.105224 TGTTGAGAAAACGCCCTCGA 59.895 50.000 0.00 0.00 39.41 4.04
1974 2390 0.790814 GTTGAGAAAACGCCCTCGAG 59.209 55.000 5.13 5.13 39.41 4.04
1975 2391 0.320421 TTGAGAAAACGCCCTCGAGG 60.320 55.000 25.36 25.36 39.41 4.63
1987 2403 3.760580 CCCTCGAGGCTCTTTATTCAT 57.239 47.619 26.87 0.00 0.00 2.57
1988 2404 4.078639 CCCTCGAGGCTCTTTATTCATT 57.921 45.455 26.87 0.00 0.00 2.57
1989 2405 5.215252 CCCTCGAGGCTCTTTATTCATTA 57.785 43.478 26.87 0.00 0.00 1.90
1990 2406 5.611374 CCCTCGAGGCTCTTTATTCATTAA 58.389 41.667 26.87 0.00 0.00 1.40
1991 2407 5.467063 CCCTCGAGGCTCTTTATTCATTAAC 59.533 44.000 26.87 0.00 0.00 2.01
1992 2408 5.175856 CCTCGAGGCTCTTTATTCATTAACG 59.824 44.000 20.67 0.00 0.00 3.18
1993 2409 5.047847 TCGAGGCTCTTTATTCATTAACGG 58.952 41.667 13.50 0.00 0.00 4.44
1994 2410 5.047847 CGAGGCTCTTTATTCATTAACGGA 58.952 41.667 13.50 0.00 0.00 4.69
1995 2411 5.050972 CGAGGCTCTTTATTCATTAACGGAC 60.051 44.000 13.50 0.00 0.00 4.79
1996 2412 5.741011 AGGCTCTTTATTCATTAACGGACA 58.259 37.500 0.00 0.00 0.00 4.02
1997 2413 6.177610 AGGCTCTTTATTCATTAACGGACAA 58.822 36.000 0.00 0.00 0.00 3.18
1998 2414 6.316390 AGGCTCTTTATTCATTAACGGACAAG 59.684 38.462 0.00 0.00 0.00 3.16
1999 2415 6.093633 GGCTCTTTATTCATTAACGGACAAGT 59.906 38.462 0.00 0.00 0.00 3.16
2000 2416 7.361799 GGCTCTTTATTCATTAACGGACAAGTT 60.362 37.037 0.00 0.00 38.07 2.66
2001 2417 7.692705 GCTCTTTATTCATTAACGGACAAGTTC 59.307 37.037 0.00 0.00 35.70 3.01
2002 2418 8.610248 TCTTTATTCATTAACGGACAAGTTCA 57.390 30.769 0.00 0.00 35.70 3.18
2003 2419 9.226606 TCTTTATTCATTAACGGACAAGTTCAT 57.773 29.630 0.00 0.00 35.70 2.57
2007 2423 8.964476 ATTCATTAACGGACAAGTTCATATCT 57.036 30.769 0.00 0.00 35.70 1.98
2008 2424 7.770801 TCATTAACGGACAAGTTCATATCTG 57.229 36.000 0.00 0.00 35.70 2.90
2009 2425 7.552459 TCATTAACGGACAAGTTCATATCTGA 58.448 34.615 0.00 0.00 35.70 3.27
2010 2426 8.204160 TCATTAACGGACAAGTTCATATCTGAT 58.796 33.333 0.00 0.00 35.70 2.90
2011 2427 8.491152 CATTAACGGACAAGTTCATATCTGATC 58.509 37.037 0.00 0.00 35.70 2.92
2012 2428 4.611943 ACGGACAAGTTCATATCTGATCG 58.388 43.478 0.00 0.00 0.00 3.69
2013 2429 4.338400 ACGGACAAGTTCATATCTGATCGA 59.662 41.667 0.00 0.00 0.00 3.59
2014 2430 5.163550 ACGGACAAGTTCATATCTGATCGAA 60.164 40.000 0.00 0.00 0.00 3.71
2015 2431 5.174035 CGGACAAGTTCATATCTGATCGAAC 59.826 44.000 18.26 18.26 38.40 3.95
2016 2432 6.042777 GGACAAGTTCATATCTGATCGAACA 58.957 40.000 23.70 0.00 40.14 3.18
2017 2433 6.703607 GGACAAGTTCATATCTGATCGAACAT 59.296 38.462 23.70 15.27 40.14 2.71
2018 2434 7.307042 GGACAAGTTCATATCTGATCGAACATG 60.307 40.741 23.70 23.26 40.83 3.21
2019 2435 7.044181 ACAAGTTCATATCTGATCGAACATGT 58.956 34.615 23.67 23.67 42.30 3.21
2020 2436 7.223582 ACAAGTTCATATCTGATCGAACATGTC 59.776 37.037 23.67 10.08 43.07 3.06
2021 2437 7.048629 AGTTCATATCTGATCGAACATGTCT 57.951 36.000 23.70 10.94 40.14 3.41
2022 2438 7.144661 AGTTCATATCTGATCGAACATGTCTC 58.855 38.462 23.70 0.00 40.14 3.36
2023 2439 6.639632 TCATATCTGATCGAACATGTCTCA 57.360 37.500 0.00 0.00 0.00 3.27
2024 2440 7.042797 TCATATCTGATCGAACATGTCTCAA 57.957 36.000 0.00 0.00 0.00 3.02
2025 2441 6.920210 TCATATCTGATCGAACATGTCTCAAC 59.080 38.462 0.00 0.00 0.00 3.18
2026 2442 3.849911 TCTGATCGAACATGTCTCAACC 58.150 45.455 0.00 0.00 0.00 3.77
2027 2443 3.258123 TCTGATCGAACATGTCTCAACCA 59.742 43.478 0.00 0.00 0.00 3.67
2028 2444 3.588955 TGATCGAACATGTCTCAACCAG 58.411 45.455 0.00 0.00 0.00 4.00
2029 2445 3.258123 TGATCGAACATGTCTCAACCAGA 59.742 43.478 0.00 0.00 0.00 3.86
2030 2446 3.961480 TCGAACATGTCTCAACCAGAT 57.039 42.857 0.00 0.00 32.08 2.90
2031 2447 4.271696 TCGAACATGTCTCAACCAGATT 57.728 40.909 0.00 0.00 32.08 2.40
2032 2448 5.400066 TCGAACATGTCTCAACCAGATTA 57.600 39.130 0.00 0.00 32.08 1.75
2033 2449 5.789521 TCGAACATGTCTCAACCAGATTAA 58.210 37.500 0.00 0.00 32.08 1.40
2034 2450 5.637810 TCGAACATGTCTCAACCAGATTAAC 59.362 40.000 0.00 0.00 32.08 2.01
2035 2451 5.408299 CGAACATGTCTCAACCAGATTAACA 59.592 40.000 0.00 0.00 32.08 2.41
2036 2452 6.560253 AACATGTCTCAACCAGATTAACAC 57.440 37.500 0.00 0.00 32.08 3.32
2037 2453 4.690748 ACATGTCTCAACCAGATTAACACG 59.309 41.667 0.00 0.00 32.08 4.49
2038 2454 3.659786 TGTCTCAACCAGATTAACACGG 58.340 45.455 0.00 0.00 32.08 4.94
2039 2455 3.322541 TGTCTCAACCAGATTAACACGGA 59.677 43.478 0.00 0.00 32.08 4.69
2040 2456 4.020573 TGTCTCAACCAGATTAACACGGAT 60.021 41.667 0.00 0.00 32.08 4.18
2041 2457 5.186215 TGTCTCAACCAGATTAACACGGATA 59.814 40.000 0.00 0.00 32.08 2.59
2042 2458 5.519206 GTCTCAACCAGATTAACACGGATAC 59.481 44.000 0.00 0.00 32.08 2.24
2043 2459 5.186215 TCTCAACCAGATTAACACGGATACA 59.814 40.000 0.00 0.00 0.00 2.29
2044 2460 5.984725 TCAACCAGATTAACACGGATACAT 58.015 37.500 0.00 0.00 0.00 2.29
2045 2461 5.815222 TCAACCAGATTAACACGGATACATG 59.185 40.000 0.00 0.00 0.00 3.21
2046 2462 4.703897 ACCAGATTAACACGGATACATGG 58.296 43.478 0.00 0.00 0.00 3.66
2047 2463 4.163458 ACCAGATTAACACGGATACATGGT 59.837 41.667 0.00 0.00 32.63 3.55
2048 2464 5.364446 ACCAGATTAACACGGATACATGGTA 59.636 40.000 0.00 0.00 35.64 3.25
2049 2465 5.694910 CCAGATTAACACGGATACATGGTAC 59.305 44.000 0.00 0.00 0.00 3.34
2065 2481 4.471904 TGGTACATAGTGAAGCAAGGAG 57.528 45.455 0.00 0.00 0.00 3.69
2066 2482 3.198872 GGTACATAGTGAAGCAAGGAGC 58.801 50.000 0.00 0.00 46.19 4.70
2077 2493 2.985406 GCAAGGAGCAAGACAAAGAG 57.015 50.000 0.00 0.00 44.79 2.85
2078 2494 1.068679 GCAAGGAGCAAGACAAAGAGC 60.069 52.381 0.00 0.00 44.79 4.09
2079 2495 1.538950 CAAGGAGCAAGACAAAGAGCC 59.461 52.381 0.00 0.00 0.00 4.70
2080 2496 1.063183 AGGAGCAAGACAAAGAGCCT 58.937 50.000 0.00 0.00 0.00 4.58
2081 2497 1.003003 AGGAGCAAGACAAAGAGCCTC 59.997 52.381 0.00 0.00 0.00 4.70
2082 2498 1.003003 GGAGCAAGACAAAGAGCCTCT 59.997 52.381 0.00 0.00 0.00 3.69
2083 2499 2.234908 GGAGCAAGACAAAGAGCCTCTA 59.765 50.000 0.00 0.00 0.00 2.43
2084 2500 3.118445 GGAGCAAGACAAAGAGCCTCTAT 60.118 47.826 0.00 0.00 0.00 1.98
2085 2501 4.100189 GGAGCAAGACAAAGAGCCTCTATA 59.900 45.833 0.00 0.00 0.00 1.31
2086 2502 5.275067 AGCAAGACAAAGAGCCTCTATAG 57.725 43.478 0.00 0.00 0.00 1.31
2087 2503 3.807071 GCAAGACAAAGAGCCTCTATAGC 59.193 47.826 0.00 0.00 0.00 2.97
2088 2504 4.376146 CAAGACAAAGAGCCTCTATAGCC 58.624 47.826 0.00 0.00 0.00 3.93
2089 2505 3.647636 AGACAAAGAGCCTCTATAGCCA 58.352 45.455 0.00 0.00 0.00 4.75
2090 2506 4.033709 AGACAAAGAGCCTCTATAGCCAA 58.966 43.478 0.00 0.00 0.00 4.52
2099 2515 5.116882 AGCCTCTATAGCCAAAGTTAAACG 58.883 41.667 0.00 0.00 0.00 3.60
2117 2534 2.312390 ACGCATGGTTTAGGGTTTTGT 58.688 42.857 0.00 0.00 0.00 2.83
2266 2683 9.591792 CTGAACTACATACAAGATTCAGATTGA 57.408 33.333 6.01 0.00 43.65 2.57
2277 2694 9.003658 ACAAGATTCAGATTGATTCTAAAACGT 57.996 29.630 4.48 0.00 36.44 3.99
2610 3028 0.320771 GGGTTGCTTCTTCGAGCTCA 60.321 55.000 15.40 0.00 43.11 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 6.439599 TGGTACAAACACCAATACGAAATTG 58.560 36.000 0.00 7.87 45.65 2.32
9 10 6.636562 TGGTACAAACACCAATACGAAATT 57.363 33.333 0.00 0.00 45.65 1.82
29 30 8.536175 ACAAATATGGACGGAAATAAAAATGGT 58.464 29.630 0.00 0.00 0.00 3.55
30 31 8.940768 ACAAATATGGACGGAAATAAAAATGG 57.059 30.769 0.00 0.00 0.00 3.16
36 37 8.605746 CGTAGAAACAAATATGGACGGAAATAA 58.394 33.333 0.00 0.00 0.00 1.40
37 38 8.133754 CGTAGAAACAAATATGGACGGAAATA 57.866 34.615 0.00 0.00 0.00 1.40
38 39 7.011828 CGTAGAAACAAATATGGACGGAAAT 57.988 36.000 0.00 0.00 0.00 2.17
39 40 6.411630 CGTAGAAACAAATATGGACGGAAA 57.588 37.500 0.00 0.00 0.00 3.13
42 43 4.789095 CCGTAGAAACAAATATGGACGG 57.211 45.455 0.00 0.00 42.17 4.79
43 44 5.789710 AACCGTAGAAACAAATATGGACG 57.210 39.130 0.00 0.00 33.14 4.79
44 45 7.813645 AGAAAACCGTAGAAACAAATATGGAC 58.186 34.615 0.00 0.00 33.14 4.02
45 46 7.989416 AGAAAACCGTAGAAACAAATATGGA 57.011 32.000 0.00 0.00 33.14 3.41
96 97 5.074746 AGGGATGAAACAGGGTAGTTTTT 57.925 39.130 0.00 0.00 41.48 1.94
97 98 4.741928 AGGGATGAAACAGGGTAGTTTT 57.258 40.909 0.00 0.00 41.48 2.43
98 99 4.741928 AAGGGATGAAACAGGGTAGTTT 57.258 40.909 0.00 0.00 43.90 2.66
99 100 4.741928 AAAGGGATGAAACAGGGTAGTT 57.258 40.909 0.00 0.00 0.00 2.24
100 101 4.741928 AAAAGGGATGAAACAGGGTAGT 57.258 40.909 0.00 0.00 0.00 2.73
125 126 4.289238 TCGATGAGTAGGGGTAGAGATC 57.711 50.000 0.00 0.00 0.00 2.75
229 230 2.796593 TGAGATCTCAATTATGCGTGCG 59.203 45.455 23.17 0.00 36.53 5.34
263 268 7.943447 CCCCATGATGAGATCTTAATCTTCTTT 59.057 37.037 16.18 0.00 42.46 2.52
313 318 2.427095 GGTGGTGGATTAGCATTGTTCC 59.573 50.000 0.00 0.00 39.30 3.62
319 324 1.133976 GCAGAGGTGGTGGATTAGCAT 60.134 52.381 0.00 0.00 39.30 3.79
354 359 6.441284 AGGTTGGGTTTAAAAGGTTTTAGTGT 59.559 34.615 0.00 0.00 34.45 3.55
380 385 6.936279 AGATAAGACGGAGAAACTTTGATGA 58.064 36.000 0.00 0.00 0.00 2.92
385 390 6.378848 AGCTAGAGATAAGACGGAGAAACTTT 59.621 38.462 0.00 0.00 0.00 2.66
396 401 7.038154 AGACACATCAAGCTAGAGATAAGAC 57.962 40.000 0.00 0.00 0.00 3.01
435 440 2.549064 AAAACCAATTGCCTCAAGCC 57.451 45.000 0.00 0.00 42.71 4.35
467 480 2.209064 GAGGCACAGTTCGCGAGGTA 62.209 60.000 9.59 0.00 0.00 3.08
489 502 0.323908 TATTTTGGAACTGCCGGGGG 60.324 55.000 2.18 0.00 40.66 5.40
511 524 3.648528 CGCGAGGATCAGTGAATCA 57.351 52.632 0.00 0.00 33.17 2.57
564 577 7.013274 ACCTATACAAAAATCGAATGTGGATGG 59.987 37.037 0.00 0.00 0.00 3.51
595 847 7.889873 AAATGGACGGAAATAAATATGGTGA 57.110 32.000 0.00 0.00 0.00 4.02
703 955 2.020441 TGGGTGATTAGGGGTAGGGATT 60.020 50.000 0.00 0.00 0.00 3.01
737 990 6.539103 CCCTTCACTACTCCAAATAAGCTAAC 59.461 42.308 0.00 0.00 0.00 2.34
899 1293 2.598907 CGTTGAAGACGTTCGTTGCATT 60.599 45.455 0.00 0.00 46.49 3.56
1071 1471 1.135632 CAAAGAGGTCGACGAGAGGAC 60.136 57.143 9.92 0.00 0.00 3.85
1128 1530 2.776913 GGAGAAGAGAGGTCGGCGG 61.777 68.421 7.21 0.00 0.00 6.13
1141 1543 1.831106 AGTGCGTGGTATGATGGAGAA 59.169 47.619 0.00 0.00 0.00 2.87
1192 1594 3.755378 GCAATAGCGATCATGGAATCCTT 59.245 43.478 0.00 0.00 0.00 3.36
1198 1600 0.320683 CCGGCAATAGCGATCATGGA 60.321 55.000 0.00 0.00 43.41 3.41
1325 1727 4.641645 CGCACTCCTGGGGCACAA 62.642 66.667 0.00 0.00 0.00 3.33
1376 1784 0.457851 CTCAGAGTCGCCGGAGAATT 59.542 55.000 10.32 0.47 31.38 2.17
1379 1787 3.134792 GCTCAGAGTCGCCGGAGA 61.135 66.667 5.05 3.81 31.38 3.71
1438 1846 2.028484 GCACTCGTCGTGGAACCA 59.972 61.111 9.07 0.00 43.97 3.67
1630 2038 4.063967 TGGGCTACGCGTCCACAG 62.064 66.667 18.63 9.09 0.00 3.66
1664 2072 3.934391 GACCTTCCTCACACGGCCG 62.934 68.421 26.86 26.86 0.00 6.13
1694 2102 5.070001 CCACTTTGGTTTCACTAATCCTCA 58.930 41.667 0.00 0.00 31.35 3.86
1720 2128 4.675190 ATGTGAAATCTTGAAGCACTCG 57.325 40.909 0.00 0.00 0.00 4.18
1756 2164 4.214119 CACATATGAATCCGATTCCACACC 59.786 45.833 16.82 0.00 38.50 4.16
1772 2180 8.565416 ACAAAGCAATGATGATAGACACATATG 58.435 33.333 0.00 0.00 0.00 1.78
1781 2189 4.813161 ACGAGGACAAAGCAATGATGATAG 59.187 41.667 0.00 0.00 0.00 2.08
1793 2209 2.290367 TGCACATGAAACGAGGACAAAG 59.710 45.455 0.00 0.00 0.00 2.77
1819 2235 7.724305 AAATACGTATGAAATATCCGCAAGT 57.276 32.000 9.24 0.00 0.00 3.16
1832 2248 7.423199 ACAAGCTCTCGAATAAATACGTATGA 58.577 34.615 9.24 0.55 0.00 2.15
1833 2249 7.378728 TGACAAGCTCTCGAATAAATACGTATG 59.621 37.037 9.24 0.00 0.00 2.39
1834 2250 7.378995 GTGACAAGCTCTCGAATAAATACGTAT 59.621 37.037 1.14 1.14 0.00 3.06
1836 2252 5.515626 GTGACAAGCTCTCGAATAAATACGT 59.484 40.000 0.00 0.00 0.00 3.57
1837 2253 5.744345 AGTGACAAGCTCTCGAATAAATACG 59.256 40.000 0.00 0.00 0.00 3.06
1838 2254 7.527084 AAGTGACAAGCTCTCGAATAAATAC 57.473 36.000 0.00 0.00 0.00 1.89
1839 2255 9.817809 ATAAAGTGACAAGCTCTCGAATAAATA 57.182 29.630 0.00 0.00 0.00 1.40
1840 2256 8.723942 ATAAAGTGACAAGCTCTCGAATAAAT 57.276 30.769 0.00 0.00 0.00 1.40
1848 2264 4.090642 CGTGTGATAAAGTGACAAGCTCTC 59.909 45.833 0.00 0.00 0.00 3.20
1850 2266 3.123621 CCGTGTGATAAAGTGACAAGCTC 59.876 47.826 0.00 0.00 0.00 4.09
1905 2321 4.775058 TGCGTGCCTATTGTACATTTTT 57.225 36.364 0.00 0.00 0.00 1.94
1906 2322 4.397730 TCATGCGTGCCTATTGTACATTTT 59.602 37.500 0.00 0.00 0.00 1.82
1907 2323 3.944650 TCATGCGTGCCTATTGTACATTT 59.055 39.130 0.00 0.00 0.00 2.32
1908 2324 3.312421 GTCATGCGTGCCTATTGTACATT 59.688 43.478 0.00 0.00 0.00 2.71
1909 2325 2.872245 GTCATGCGTGCCTATTGTACAT 59.128 45.455 0.00 0.00 0.00 2.29
1910 2326 2.276201 GTCATGCGTGCCTATTGTACA 58.724 47.619 0.00 0.00 0.00 2.90
1911 2327 2.276201 TGTCATGCGTGCCTATTGTAC 58.724 47.619 0.00 0.00 0.00 2.90
1912 2328 2.675844 GTTGTCATGCGTGCCTATTGTA 59.324 45.455 0.00 0.00 0.00 2.41
1913 2329 1.468520 GTTGTCATGCGTGCCTATTGT 59.531 47.619 0.00 0.00 0.00 2.71
1914 2330 1.739466 AGTTGTCATGCGTGCCTATTG 59.261 47.619 0.00 0.00 0.00 1.90
1915 2331 2.113860 AGTTGTCATGCGTGCCTATT 57.886 45.000 0.00 0.00 0.00 1.73
1916 2332 2.009774 GAAGTTGTCATGCGTGCCTAT 58.990 47.619 0.00 0.00 0.00 2.57
1917 2333 1.001974 AGAAGTTGTCATGCGTGCCTA 59.998 47.619 0.00 0.00 0.00 3.93
1918 2334 0.250467 AGAAGTTGTCATGCGTGCCT 60.250 50.000 0.00 0.00 0.00 4.75
1919 2335 0.593128 AAGAAGTTGTCATGCGTGCC 59.407 50.000 0.00 0.00 0.00 5.01
1920 2336 1.264020 TGAAGAAGTTGTCATGCGTGC 59.736 47.619 0.00 0.00 0.00 5.34
1921 2337 2.545526 ACTGAAGAAGTTGTCATGCGTG 59.454 45.455 0.00 0.00 34.57 5.34
1922 2338 2.838736 ACTGAAGAAGTTGTCATGCGT 58.161 42.857 0.00 0.00 34.57 5.24
1935 2351 9.661563 TCTCAACAAAAACTAACTAACTGAAGA 57.338 29.630 0.00 0.00 0.00 2.87
1940 2356 9.550811 CGTTTTCTCAACAAAAACTAACTAACT 57.449 29.630 9.11 0.00 41.99 2.24
1941 2357 8.309019 GCGTTTTCTCAACAAAAACTAACTAAC 58.691 33.333 9.11 0.00 41.99 2.34
1942 2358 7.485595 GGCGTTTTCTCAACAAAAACTAACTAA 59.514 33.333 9.11 0.00 41.99 2.24
1943 2359 6.968335 GGCGTTTTCTCAACAAAAACTAACTA 59.032 34.615 9.11 0.00 41.99 2.24
1944 2360 5.803461 GGCGTTTTCTCAACAAAAACTAACT 59.197 36.000 9.11 0.00 41.99 2.24
1945 2361 5.005012 GGGCGTTTTCTCAACAAAAACTAAC 59.995 40.000 9.11 0.00 41.99 2.34
1946 2362 5.103687 GGGCGTTTTCTCAACAAAAACTAA 58.896 37.500 9.11 0.00 41.99 2.24
1947 2363 4.399934 AGGGCGTTTTCTCAACAAAAACTA 59.600 37.500 9.11 0.00 41.99 2.24
1948 2364 3.194755 AGGGCGTTTTCTCAACAAAAACT 59.805 39.130 9.11 0.00 41.99 2.66
1949 2365 3.517602 AGGGCGTTTTCTCAACAAAAAC 58.482 40.909 0.00 0.00 41.18 2.43
1950 2366 3.732471 CGAGGGCGTTTTCTCAACAAAAA 60.732 43.478 0.00 0.00 0.00 1.94
1951 2367 2.223386 CGAGGGCGTTTTCTCAACAAAA 60.223 45.455 0.00 0.00 0.00 2.44
1952 2368 1.332375 CGAGGGCGTTTTCTCAACAAA 59.668 47.619 0.00 0.00 0.00 2.83
1953 2369 0.941542 CGAGGGCGTTTTCTCAACAA 59.058 50.000 0.00 0.00 0.00 2.83
1954 2370 0.105224 TCGAGGGCGTTTTCTCAACA 59.895 50.000 0.00 0.00 38.98 3.33
1955 2371 0.790814 CTCGAGGGCGTTTTCTCAAC 59.209 55.000 3.91 0.00 38.98 3.18
1956 2372 0.320421 CCTCGAGGGCGTTTTCTCAA 60.320 55.000 24.62 0.00 38.98 3.02
1957 2373 1.292223 CCTCGAGGGCGTTTTCTCA 59.708 57.895 24.62 0.00 38.98 3.27
1958 2374 4.187056 CCTCGAGGGCGTTTTCTC 57.813 61.111 24.62 0.00 38.98 2.87
1967 2383 3.760580 ATGAATAAAGAGCCTCGAGGG 57.239 47.619 32.06 14.53 35.18 4.30
1968 2384 5.175856 CGTTAATGAATAAAGAGCCTCGAGG 59.824 44.000 27.83 27.83 38.53 4.63
1969 2385 5.175856 CCGTTAATGAATAAAGAGCCTCGAG 59.824 44.000 5.13 5.13 0.00 4.04
1970 2386 5.047847 CCGTTAATGAATAAAGAGCCTCGA 58.952 41.667 0.00 0.00 0.00 4.04
1971 2387 5.047847 TCCGTTAATGAATAAAGAGCCTCG 58.952 41.667 0.00 0.00 0.00 4.63
1972 2388 5.815740 TGTCCGTTAATGAATAAAGAGCCTC 59.184 40.000 0.00 0.00 0.00 4.70
1973 2389 5.741011 TGTCCGTTAATGAATAAAGAGCCT 58.259 37.500 0.00 0.00 0.00 4.58
1974 2390 6.093633 ACTTGTCCGTTAATGAATAAAGAGCC 59.906 38.462 0.00 0.00 0.00 4.70
1975 2391 7.073342 ACTTGTCCGTTAATGAATAAAGAGC 57.927 36.000 0.00 0.00 0.00 4.09
1976 2392 8.717821 TGAACTTGTCCGTTAATGAATAAAGAG 58.282 33.333 0.00 0.00 0.00 2.85
1977 2393 8.610248 TGAACTTGTCCGTTAATGAATAAAGA 57.390 30.769 0.00 0.00 0.00 2.52
1982 2398 8.830580 CAGATATGAACTTGTCCGTTAATGAAT 58.169 33.333 0.00 0.00 0.00 2.57
1983 2399 8.038351 TCAGATATGAACTTGTCCGTTAATGAA 58.962 33.333 0.00 0.00 0.00 2.57
1984 2400 7.552459 TCAGATATGAACTTGTCCGTTAATGA 58.448 34.615 0.00 0.00 0.00 2.57
1985 2401 7.770801 TCAGATATGAACTTGTCCGTTAATG 57.229 36.000 0.00 0.00 0.00 1.90
1986 2402 7.382488 CGATCAGATATGAACTTGTCCGTTAAT 59.618 37.037 0.00 0.00 0.00 1.40
1987 2403 6.695713 CGATCAGATATGAACTTGTCCGTTAA 59.304 38.462 0.00 0.00 0.00 2.01
1988 2404 6.038936 TCGATCAGATATGAACTTGTCCGTTA 59.961 38.462 0.00 0.00 0.00 3.18
1989 2405 5.043903 CGATCAGATATGAACTTGTCCGTT 58.956 41.667 0.00 0.00 0.00 4.44
1990 2406 4.338400 TCGATCAGATATGAACTTGTCCGT 59.662 41.667 0.00 0.00 0.00 4.69
1991 2407 4.860072 TCGATCAGATATGAACTTGTCCG 58.140 43.478 0.00 0.00 0.00 4.79
1992 2408 6.042777 TGTTCGATCAGATATGAACTTGTCC 58.957 40.000 20.67 3.36 40.93 4.02
1993 2409 7.562412 CATGTTCGATCAGATATGAACTTGTC 58.438 38.462 21.71 5.99 40.93 3.18
1994 2410 7.044181 ACATGTTCGATCAGATATGAACTTGT 58.956 34.615 25.59 25.59 46.20 3.16
1995 2411 7.437565 AGACATGTTCGATCAGATATGAACTTG 59.562 37.037 24.82 24.82 44.96 3.16
1996 2412 7.495901 AGACATGTTCGATCAGATATGAACTT 58.504 34.615 20.67 15.04 40.93 2.66
1997 2413 7.048629 AGACATGTTCGATCAGATATGAACT 57.951 36.000 20.67 8.04 40.93 3.01
1998 2414 6.920210 TGAGACATGTTCGATCAGATATGAAC 59.080 38.462 16.21 16.21 40.76 3.18
1999 2415 7.042797 TGAGACATGTTCGATCAGATATGAA 57.957 36.000 0.00 0.00 31.93 2.57
2000 2416 6.639632 TGAGACATGTTCGATCAGATATGA 57.360 37.500 0.00 0.00 31.93 2.15
2001 2417 6.145209 GGTTGAGACATGTTCGATCAGATATG 59.855 42.308 0.00 0.00 33.01 1.78
2002 2418 6.183360 TGGTTGAGACATGTTCGATCAGATAT 60.183 38.462 0.00 0.00 0.00 1.63
2003 2419 5.127031 TGGTTGAGACATGTTCGATCAGATA 59.873 40.000 0.00 0.00 0.00 1.98
2004 2420 4.081476 TGGTTGAGACATGTTCGATCAGAT 60.081 41.667 0.00 0.00 0.00 2.90
2005 2421 3.258123 TGGTTGAGACATGTTCGATCAGA 59.742 43.478 0.00 0.00 0.00 3.27
2006 2422 3.588955 TGGTTGAGACATGTTCGATCAG 58.411 45.455 0.00 0.00 0.00 2.90
2007 2423 3.258123 TCTGGTTGAGACATGTTCGATCA 59.742 43.478 0.00 5.55 0.00 2.92
2008 2424 3.849911 TCTGGTTGAGACATGTTCGATC 58.150 45.455 0.00 0.96 0.00 3.69
2009 2425 3.961480 TCTGGTTGAGACATGTTCGAT 57.039 42.857 0.00 0.00 0.00 3.59
2010 2426 3.961480 ATCTGGTTGAGACATGTTCGA 57.039 42.857 0.00 0.00 31.75 3.71
2011 2427 5.408299 TGTTAATCTGGTTGAGACATGTTCG 59.592 40.000 0.00 0.00 31.75 3.95
2012 2428 6.603095 GTGTTAATCTGGTTGAGACATGTTC 58.397 40.000 0.00 0.31 31.75 3.18
2013 2429 5.179368 CGTGTTAATCTGGTTGAGACATGTT 59.821 40.000 0.00 0.00 31.75 2.71
2014 2430 4.690748 CGTGTTAATCTGGTTGAGACATGT 59.309 41.667 0.00 0.00 31.75 3.21
2015 2431 4.093408 CCGTGTTAATCTGGTTGAGACATG 59.907 45.833 0.00 0.00 31.75 3.21
2016 2432 4.020573 TCCGTGTTAATCTGGTTGAGACAT 60.021 41.667 0.00 0.00 31.75 3.06
2017 2433 3.322541 TCCGTGTTAATCTGGTTGAGACA 59.677 43.478 0.00 0.00 31.75 3.41
2018 2434 3.921677 TCCGTGTTAATCTGGTTGAGAC 58.078 45.455 0.00 0.00 31.75 3.36
2019 2435 4.819105 ATCCGTGTTAATCTGGTTGAGA 57.181 40.909 0.00 0.00 34.25 3.27
2020 2436 5.416083 TGTATCCGTGTTAATCTGGTTGAG 58.584 41.667 0.00 0.00 0.00 3.02
2021 2437 5.408880 TGTATCCGTGTTAATCTGGTTGA 57.591 39.130 0.00 0.00 0.00 3.18
2022 2438 5.007626 CCATGTATCCGTGTTAATCTGGTTG 59.992 44.000 0.00 0.00 0.00 3.77
2023 2439 5.123227 CCATGTATCCGTGTTAATCTGGTT 58.877 41.667 0.00 0.00 0.00 3.67
2024 2440 4.163458 ACCATGTATCCGTGTTAATCTGGT 59.837 41.667 0.00 0.00 0.00 4.00
2025 2441 4.703897 ACCATGTATCCGTGTTAATCTGG 58.296 43.478 0.00 0.00 0.00 3.86
2026 2442 6.277605 TGTACCATGTATCCGTGTTAATCTG 58.722 40.000 0.00 0.00 0.00 2.90
2027 2443 6.474140 TGTACCATGTATCCGTGTTAATCT 57.526 37.500 0.00 0.00 0.00 2.40
2028 2444 8.086522 ACTATGTACCATGTATCCGTGTTAATC 58.913 37.037 0.00 0.00 0.00 1.75
2029 2445 7.870954 CACTATGTACCATGTATCCGTGTTAAT 59.129 37.037 0.00 0.00 0.00 1.40
2030 2446 7.068470 TCACTATGTACCATGTATCCGTGTTAA 59.932 37.037 0.00 0.00 0.00 2.01
2031 2447 6.546772 TCACTATGTACCATGTATCCGTGTTA 59.453 38.462 0.00 0.00 0.00 2.41
2032 2448 5.361571 TCACTATGTACCATGTATCCGTGTT 59.638 40.000 0.00 0.00 0.00 3.32
2033 2449 4.891168 TCACTATGTACCATGTATCCGTGT 59.109 41.667 0.00 0.00 0.00 4.49
2034 2450 5.447624 TCACTATGTACCATGTATCCGTG 57.552 43.478 0.00 0.00 0.00 4.94
2035 2451 5.509163 GCTTCACTATGTACCATGTATCCGT 60.509 44.000 0.00 0.00 0.00 4.69
2036 2452 4.923871 GCTTCACTATGTACCATGTATCCG 59.076 45.833 0.00 0.00 0.00 4.18
2037 2453 5.853936 TGCTTCACTATGTACCATGTATCC 58.146 41.667 0.00 0.00 0.00 2.59
2038 2454 6.425114 CCTTGCTTCACTATGTACCATGTATC 59.575 42.308 0.00 0.00 0.00 2.24
2039 2455 6.099701 TCCTTGCTTCACTATGTACCATGTAT 59.900 38.462 0.00 0.00 0.00 2.29
2040 2456 5.423931 TCCTTGCTTCACTATGTACCATGTA 59.576 40.000 0.00 0.00 0.00 2.29
2041 2457 4.225042 TCCTTGCTTCACTATGTACCATGT 59.775 41.667 0.00 0.00 0.00 3.21
2042 2458 4.769688 TCCTTGCTTCACTATGTACCATG 58.230 43.478 0.00 0.00 0.00 3.66
2043 2459 4.684485 GCTCCTTGCTTCACTATGTACCAT 60.684 45.833 0.00 0.00 38.95 3.55
2044 2460 3.369471 GCTCCTTGCTTCACTATGTACCA 60.369 47.826 0.00 0.00 38.95 3.25
2045 2461 3.198872 GCTCCTTGCTTCACTATGTACC 58.801 50.000 0.00 0.00 38.95 3.34
2046 2462 3.861840 TGCTCCTTGCTTCACTATGTAC 58.138 45.455 0.00 0.00 43.37 2.90
2047 2463 4.222810 TCTTGCTCCTTGCTTCACTATGTA 59.777 41.667 0.00 0.00 43.37 2.29
2048 2464 3.008375 TCTTGCTCCTTGCTTCACTATGT 59.992 43.478 0.00 0.00 43.37 2.29
2049 2465 3.373439 GTCTTGCTCCTTGCTTCACTATG 59.627 47.826 0.00 0.00 43.37 2.23
2050 2466 3.008375 TGTCTTGCTCCTTGCTTCACTAT 59.992 43.478 0.00 0.00 43.37 2.12
2051 2467 2.368548 TGTCTTGCTCCTTGCTTCACTA 59.631 45.455 0.00 0.00 43.37 2.74
2052 2468 1.141657 TGTCTTGCTCCTTGCTTCACT 59.858 47.619 0.00 0.00 43.37 3.41
2053 2469 1.597742 TGTCTTGCTCCTTGCTTCAC 58.402 50.000 0.00 0.00 43.37 3.18
2054 2470 2.346766 TTGTCTTGCTCCTTGCTTCA 57.653 45.000 0.00 0.00 43.37 3.02
2055 2471 2.880890 TCTTTGTCTTGCTCCTTGCTTC 59.119 45.455 0.00 0.00 43.37 3.86
2056 2472 2.883386 CTCTTTGTCTTGCTCCTTGCTT 59.117 45.455 0.00 0.00 43.37 3.91
2057 2473 2.502295 CTCTTTGTCTTGCTCCTTGCT 58.498 47.619 0.00 0.00 43.37 3.91
2058 2474 1.068679 GCTCTTTGTCTTGCTCCTTGC 60.069 52.381 0.00 0.00 43.25 4.01
2059 2475 1.538950 GGCTCTTTGTCTTGCTCCTTG 59.461 52.381 0.00 0.00 0.00 3.61
2060 2476 1.423161 AGGCTCTTTGTCTTGCTCCTT 59.577 47.619 0.00 0.00 0.00 3.36
2061 2477 1.003003 GAGGCTCTTTGTCTTGCTCCT 59.997 52.381 7.40 0.00 0.00 3.69
2062 2478 1.003003 AGAGGCTCTTTGTCTTGCTCC 59.997 52.381 12.24 0.00 0.00 4.70
2063 2479 2.470983 AGAGGCTCTTTGTCTTGCTC 57.529 50.000 12.24 0.00 0.00 4.26
2064 2480 4.442753 GCTATAGAGGCTCTTTGTCTTGCT 60.443 45.833 24.13 0.00 0.00 3.91
2065 2481 3.807071 GCTATAGAGGCTCTTTGTCTTGC 59.193 47.826 24.13 13.21 0.00 4.01
2066 2482 4.376146 GGCTATAGAGGCTCTTTGTCTTG 58.624 47.826 24.13 7.53 44.83 3.02
2067 2483 4.681074 GGCTATAGAGGCTCTTTGTCTT 57.319 45.455 24.13 0.00 44.83 3.01
2078 2494 4.873827 TGCGTTTAACTTTGGCTATAGAGG 59.126 41.667 3.21 0.00 0.00 3.69
2079 2495 6.422223 CATGCGTTTAACTTTGGCTATAGAG 58.578 40.000 3.21 0.00 0.00 2.43
2080 2496 5.295787 CCATGCGTTTAACTTTGGCTATAGA 59.704 40.000 3.21 0.00 0.00 1.98
2081 2497 5.065988 ACCATGCGTTTAACTTTGGCTATAG 59.934 40.000 0.00 0.00 0.00 1.31
2082 2498 4.944930 ACCATGCGTTTAACTTTGGCTATA 59.055 37.500 7.43 0.00 0.00 1.31
2083 2499 3.761752 ACCATGCGTTTAACTTTGGCTAT 59.238 39.130 7.43 0.00 0.00 2.97
2084 2500 3.150767 ACCATGCGTTTAACTTTGGCTA 58.849 40.909 7.43 0.00 0.00 3.93
2085 2501 1.960689 ACCATGCGTTTAACTTTGGCT 59.039 42.857 7.43 0.00 0.00 4.75
2086 2502 2.432206 ACCATGCGTTTAACTTTGGC 57.568 45.000 7.43 0.00 0.00 4.52
2087 2503 4.920927 CCTAAACCATGCGTTTAACTTTGG 59.079 41.667 15.71 11.27 44.41 3.28
2088 2504 4.920927 CCCTAAACCATGCGTTTAACTTTG 59.079 41.667 15.71 7.78 44.41 2.77
2089 2505 4.585581 ACCCTAAACCATGCGTTTAACTTT 59.414 37.500 15.71 0.00 44.41 2.66
2090 2506 4.146564 ACCCTAAACCATGCGTTTAACTT 58.853 39.130 15.71 5.26 44.41 2.66
2099 2515 3.389221 CACACAAAACCCTAAACCATGC 58.611 45.455 0.00 0.00 0.00 4.06
2117 2534 0.110295 CTGGATGTCAACCACCCACA 59.890 55.000 0.00 0.00 33.57 4.17
2266 2683 9.424319 CCAGACATATGCTATACGTTTTAGAAT 57.576 33.333 1.58 0.00 0.00 2.40
2277 2694 3.699538 CCCGCTACCAGACATATGCTATA 59.300 47.826 1.58 0.00 0.00 1.31
2278 2695 2.497675 CCCGCTACCAGACATATGCTAT 59.502 50.000 1.58 0.00 0.00 2.97
2610 3028 6.195600 TGTTGGACCTAACCTTGTATCTTT 57.804 37.500 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.