Multiple sequence alignment - TraesCS2B01G370000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G370000 chr2B 100.000 2231 0 0 1 2231 527000705 526998475 0.000000e+00 4120
1 TraesCS2B01G370000 chr2D 90.012 1692 116 23 473 2119 447346791 447345108 0.000000e+00 2139
2 TraesCS2B01G370000 chr2A 91.672 1453 94 12 451 1884 592096990 592095546 0.000000e+00 1988
3 TraesCS2B01G370000 chr2A 96.089 358 12 2 98 453 566458504 566458861 1.150000e-162 582
4 TraesCS2B01G370000 chr2A 93.220 118 8 0 2114 2231 698149944 698150061 8.190000e-40 174
5 TraesCS2B01G370000 chr2A 94.393 107 5 1 1 107 592097091 592096986 1.770000e-36 163
6 TraesCS2B01G370000 chr7A 97.695 347 8 0 107 453 642098771 642098425 4.100000e-167 597
7 TraesCS2B01G370000 chr7A 96.571 350 12 0 107 456 83022242 83021893 4.130000e-162 580
8 TraesCS2B01G370000 chr7A 96.830 347 11 0 107 453 129265729 129265383 4.130000e-162 580
9 TraesCS2B01G370000 chr7A 95.575 113 5 0 2119 2231 663183202 663183090 4.890000e-42 182
10 TraesCS2B01G370000 chr7A 92.742 124 8 1 2109 2231 586319347 586319470 6.330000e-41 178
11 TraesCS2B01G370000 chr1A 97.151 351 9 1 107 456 441773609 441773259 1.910000e-165 592
12 TraesCS2B01G370000 chr1A 94.690 113 6 0 2119 2231 551909227 551909115 2.280000e-40 176
13 TraesCS2B01G370000 chr6A 96.857 350 11 0 104 453 53495331 53495680 8.880000e-164 586
14 TraesCS2B01G370000 chr5A 97.118 347 10 0 107 453 320210333 320209987 8.880000e-164 586
15 TraesCS2B01G370000 chr3B 96.857 350 10 1 103 452 21602422 21602074 3.190000e-163 584
16 TraesCS2B01G370000 chr3B 96.056 355 13 1 99 453 487882040 487882393 5.340000e-161 577
17 TraesCS2B01G370000 chr7D 95.575 113 5 0 2119 2231 506106910 506107022 4.890000e-42 182
18 TraesCS2B01G370000 chr3A 95.575 113 5 0 2119 2231 533634494 533634606 4.890000e-42 182
19 TraesCS2B01G370000 chr1B 95.575 113 5 0 2119 2231 682295393 682295505 4.890000e-42 182
20 TraesCS2B01G370000 chr5B 94.118 119 6 1 2114 2231 228765829 228765947 1.760000e-41 180
21 TraesCS2B01G370000 chr5D 94.690 113 6 0 2119 2231 276713619 276713507 2.280000e-40 176


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G370000 chr2B 526998475 527000705 2230 True 4120.0 4120 100.0000 1 2231 1 chr2B.!!$R1 2230
1 TraesCS2B01G370000 chr2D 447345108 447346791 1683 True 2139.0 2139 90.0120 473 2119 1 chr2D.!!$R1 1646
2 TraesCS2B01G370000 chr2A 592095546 592097091 1545 True 1075.5 1988 93.0325 1 1884 2 chr2A.!!$R1 1883

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
391 392 0.038251 GGGGTGCTTGCAACTTTAGC 60.038 55.0 10.6 0.0 35.5 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2201 2253 0.165295 GACTAAAGTCCGTTTGCGCC 59.835 55.0 4.18 0.0 39.07 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 94 2.495669 AGTCTACTCCTTGAAGCTCAGC 59.504 50.000 0.00 0.00 0.00 4.26
102 103 5.994250 TCCTTGAAGCTCAGCTAATACATT 58.006 37.500 0.00 0.00 38.25 2.71
103 104 6.418101 TCCTTGAAGCTCAGCTAATACATTT 58.582 36.000 0.00 0.00 38.25 2.32
104 105 7.564793 TCCTTGAAGCTCAGCTAATACATTTA 58.435 34.615 0.00 0.00 38.25 1.40
105 106 7.712639 TCCTTGAAGCTCAGCTAATACATTTAG 59.287 37.037 0.00 0.00 38.25 1.85
106 107 7.041508 CCTTGAAGCTCAGCTAATACATTTAGG 60.042 40.741 0.00 0.00 38.25 2.69
107 108 7.124573 TGAAGCTCAGCTAATACATTTAGGA 57.875 36.000 0.00 0.00 38.25 2.94
108 109 7.212976 TGAAGCTCAGCTAATACATTTAGGAG 58.787 38.462 0.00 0.00 38.25 3.69
109 110 6.107901 AGCTCAGCTAATACATTTAGGAGG 57.892 41.667 0.00 0.00 36.99 4.30
110 111 5.012561 AGCTCAGCTAATACATTTAGGAGGG 59.987 44.000 0.00 0.00 36.99 4.30
111 112 5.221742 GCTCAGCTAATACATTTAGGAGGGT 60.222 44.000 0.00 0.00 0.00 4.34
112 113 6.174720 TCAGCTAATACATTTAGGAGGGTG 57.825 41.667 0.00 0.00 0.00 4.61
113 114 4.757149 CAGCTAATACATTTAGGAGGGTGC 59.243 45.833 0.00 0.00 0.00 5.01
114 115 4.660771 AGCTAATACATTTAGGAGGGTGCT 59.339 41.667 0.00 0.00 0.00 4.40
115 116 5.132816 AGCTAATACATTTAGGAGGGTGCTT 59.867 40.000 0.00 0.00 0.00 3.91
116 117 5.239525 GCTAATACATTTAGGAGGGTGCTTG 59.760 44.000 0.00 0.00 0.00 4.01
117 118 2.514458 ACATTTAGGAGGGTGCTTGG 57.486 50.000 0.00 0.00 0.00 3.61
118 119 1.992557 ACATTTAGGAGGGTGCTTGGA 59.007 47.619 0.00 0.00 0.00 3.53
119 120 2.582636 ACATTTAGGAGGGTGCTTGGAT 59.417 45.455 0.00 0.00 0.00 3.41
120 121 3.785887 ACATTTAGGAGGGTGCTTGGATA 59.214 43.478 0.00 0.00 0.00 2.59
121 122 3.926058 TTTAGGAGGGTGCTTGGATAC 57.074 47.619 0.00 0.00 0.00 2.24
122 123 1.410004 TAGGAGGGTGCTTGGATACG 58.590 55.000 0.00 0.00 42.51 3.06
123 124 0.617820 AGGAGGGTGCTTGGATACGT 60.618 55.000 0.00 0.00 42.51 3.57
124 125 0.252197 GGAGGGTGCTTGGATACGTT 59.748 55.000 0.00 0.00 42.51 3.99
125 126 1.339727 GGAGGGTGCTTGGATACGTTT 60.340 52.381 0.00 0.00 42.51 3.60
126 127 2.433436 GAGGGTGCTTGGATACGTTTT 58.567 47.619 0.00 0.00 42.51 2.43
127 128 3.602483 GAGGGTGCTTGGATACGTTTTA 58.398 45.455 0.00 0.00 42.51 1.52
128 129 3.606687 AGGGTGCTTGGATACGTTTTAG 58.393 45.455 0.00 0.00 42.51 1.85
129 130 3.008704 AGGGTGCTTGGATACGTTTTAGT 59.991 43.478 0.00 0.00 42.51 2.24
130 131 3.373130 GGGTGCTTGGATACGTTTTAGTC 59.627 47.826 0.00 0.00 42.51 2.59
131 132 3.373130 GGTGCTTGGATACGTTTTAGTCC 59.627 47.826 0.00 0.00 42.51 3.85
132 133 3.373130 GTGCTTGGATACGTTTTAGTCCC 59.627 47.826 0.00 0.00 42.51 4.46
133 134 3.008157 TGCTTGGATACGTTTTAGTCCCA 59.992 43.478 0.00 0.00 42.51 4.37
134 135 4.196971 GCTTGGATACGTTTTAGTCCCAT 58.803 43.478 0.00 0.00 42.51 4.00
135 136 4.035208 GCTTGGATACGTTTTAGTCCCATG 59.965 45.833 0.00 0.00 42.51 3.66
136 137 5.423704 TTGGATACGTTTTAGTCCCATGA 57.576 39.130 0.00 0.00 42.51 3.07
137 138 4.761975 TGGATACGTTTTAGTCCCATGAC 58.238 43.478 0.00 0.00 40.25 3.06
139 140 5.657745 TGGATACGTTTTAGTCCCATGACTA 59.342 40.000 0.00 0.00 45.97 2.59
160 161 9.856162 TGACTAAAAGTAATGGGACTAAAACTT 57.144 29.630 0.00 0.00 0.00 2.66
162 163 8.573885 ACTAAAAGTAATGGGACTAAAACTTGC 58.426 33.333 0.00 0.00 0.00 4.01
163 164 7.597288 AAAAGTAATGGGACTAAAACTTGCT 57.403 32.000 0.00 0.00 0.00 3.91
164 165 8.700439 AAAAGTAATGGGACTAAAACTTGCTA 57.300 30.769 0.00 0.00 0.00 3.49
165 166 7.923414 AAGTAATGGGACTAAAACTTGCTAG 57.077 36.000 0.00 0.00 0.00 3.42
166 167 5.880887 AGTAATGGGACTAAAACTTGCTAGC 59.119 40.000 8.10 8.10 0.00 3.42
167 168 3.067684 TGGGACTAAAACTTGCTAGCC 57.932 47.619 13.29 0.00 0.00 3.93
168 169 2.642807 TGGGACTAAAACTTGCTAGCCT 59.357 45.455 13.29 0.00 0.00 4.58
169 170 3.271729 GGGACTAAAACTTGCTAGCCTC 58.728 50.000 13.29 0.00 0.00 4.70
170 171 3.307480 GGGACTAAAACTTGCTAGCCTCA 60.307 47.826 13.29 0.00 0.00 3.86
171 172 3.685272 GGACTAAAACTTGCTAGCCTCAC 59.315 47.826 13.29 0.00 0.00 3.51
172 173 4.563786 GGACTAAAACTTGCTAGCCTCACT 60.564 45.833 13.29 0.00 0.00 3.41
173 174 4.570930 ACTAAAACTTGCTAGCCTCACTC 58.429 43.478 13.29 0.00 0.00 3.51
174 175 3.492102 AAAACTTGCTAGCCTCACTCA 57.508 42.857 13.29 0.00 0.00 3.41
175 176 3.710209 AAACTTGCTAGCCTCACTCAT 57.290 42.857 13.29 0.00 0.00 2.90
176 177 2.687700 ACTTGCTAGCCTCACTCATG 57.312 50.000 13.29 0.00 0.00 3.07
177 178 1.297664 CTTGCTAGCCTCACTCATGC 58.702 55.000 13.29 0.00 0.00 4.06
178 179 0.907486 TTGCTAGCCTCACTCATGCT 59.093 50.000 13.29 0.00 39.10 3.79
179 180 0.907486 TGCTAGCCTCACTCATGCTT 59.093 50.000 13.29 0.00 36.57 3.91
180 181 1.297664 GCTAGCCTCACTCATGCTTG 58.702 55.000 2.29 0.00 36.57 4.01
181 182 1.950828 CTAGCCTCACTCATGCTTGG 58.049 55.000 0.00 0.00 36.57 3.61
182 183 1.483827 CTAGCCTCACTCATGCTTGGA 59.516 52.381 0.00 0.00 36.57 3.53
183 184 0.917533 AGCCTCACTCATGCTTGGAT 59.082 50.000 0.00 0.00 29.17 3.41
184 185 1.134159 AGCCTCACTCATGCTTGGATC 60.134 52.381 0.00 0.00 29.17 3.36
185 186 1.964552 CCTCACTCATGCTTGGATCC 58.035 55.000 4.20 4.20 0.00 3.36
186 187 1.211212 CCTCACTCATGCTTGGATCCA 59.789 52.381 11.44 11.44 0.00 3.41
187 188 2.356432 CCTCACTCATGCTTGGATCCAA 60.356 50.000 25.53 25.53 0.00 3.53
188 189 3.349927 CTCACTCATGCTTGGATCCAAA 58.650 45.455 26.87 14.63 35.33 3.28
189 190 3.952323 CTCACTCATGCTTGGATCCAAAT 59.048 43.478 26.87 16.27 35.33 2.32
190 191 5.114764 TCACTCATGCTTGGATCCAAATA 57.885 39.130 26.87 18.63 35.33 1.40
191 192 4.883585 TCACTCATGCTTGGATCCAAATAC 59.116 41.667 26.87 19.00 35.33 1.89
192 193 4.885907 CACTCATGCTTGGATCCAAATACT 59.114 41.667 26.87 10.16 35.33 2.12
193 194 6.057533 CACTCATGCTTGGATCCAAATACTA 58.942 40.000 26.87 12.35 35.33 1.82
194 195 6.543465 CACTCATGCTTGGATCCAAATACTAA 59.457 38.462 26.87 10.91 35.33 2.24
195 196 7.067372 CACTCATGCTTGGATCCAAATACTAAA 59.933 37.037 26.87 9.45 35.33 1.85
196 197 7.284034 ACTCATGCTTGGATCCAAATACTAAAG 59.716 37.037 26.87 18.77 35.33 1.85
197 198 7.345691 TCATGCTTGGATCCAAATACTAAAGA 58.654 34.615 26.87 13.83 35.33 2.52
198 199 7.500227 TCATGCTTGGATCCAAATACTAAAGAG 59.500 37.037 26.87 12.80 35.33 2.85
199 200 6.957631 TGCTTGGATCCAAATACTAAAGAGA 58.042 36.000 26.87 1.15 35.33 3.10
200 201 6.823689 TGCTTGGATCCAAATACTAAAGAGAC 59.176 38.462 26.87 8.83 35.33 3.36
201 202 7.051000 GCTTGGATCCAAATACTAAAGAGACT 58.949 38.462 26.87 0.00 35.33 3.24
202 203 8.204836 GCTTGGATCCAAATACTAAAGAGACTA 58.795 37.037 26.87 0.00 35.33 2.59
220 221 9.507329 AAGAGACTAAAATGAAGTTATTGAGCA 57.493 29.630 0.00 0.00 0.00 4.26
221 222 9.678260 AGAGACTAAAATGAAGTTATTGAGCAT 57.322 29.630 0.00 0.00 0.00 3.79
234 235 9.866655 AAGTTATTGAGCATTTATTATCCTCCA 57.133 29.630 0.00 0.00 0.00 3.86
235 236 9.866655 AGTTATTGAGCATTTATTATCCTCCAA 57.133 29.630 0.00 0.00 0.00 3.53
238 239 6.959639 TGAGCATTTATTATCCTCCAAACC 57.040 37.500 0.00 0.00 0.00 3.27
239 240 6.430864 TGAGCATTTATTATCCTCCAAACCA 58.569 36.000 0.00 0.00 0.00 3.67
240 241 7.068702 TGAGCATTTATTATCCTCCAAACCAT 58.931 34.615 0.00 0.00 0.00 3.55
241 242 7.231317 TGAGCATTTATTATCCTCCAAACCATC 59.769 37.037 0.00 0.00 0.00 3.51
242 243 6.494835 AGCATTTATTATCCTCCAAACCATCC 59.505 38.462 0.00 0.00 0.00 3.51
243 244 6.267471 GCATTTATTATCCTCCAAACCATCCA 59.733 38.462 0.00 0.00 0.00 3.41
244 245 7.201992 GCATTTATTATCCTCCAAACCATCCAA 60.202 37.037 0.00 0.00 0.00 3.53
245 246 8.873144 CATTTATTATCCTCCAAACCATCCAAT 58.127 33.333 0.00 0.00 0.00 3.16
246 247 8.477419 TTTATTATCCTCCAAACCATCCAATC 57.523 34.615 0.00 0.00 0.00 2.67
247 248 2.826674 TCCTCCAAACCATCCAATCC 57.173 50.000 0.00 0.00 0.00 3.01
248 249 1.999295 TCCTCCAAACCATCCAATCCA 59.001 47.619 0.00 0.00 0.00 3.41
249 250 2.025037 TCCTCCAAACCATCCAATCCAG 60.025 50.000 0.00 0.00 0.00 3.86
250 251 2.025037 CCTCCAAACCATCCAATCCAGA 60.025 50.000 0.00 0.00 0.00 3.86
251 252 3.564133 CCTCCAAACCATCCAATCCAGAA 60.564 47.826 0.00 0.00 0.00 3.02
252 253 3.430453 TCCAAACCATCCAATCCAGAAC 58.570 45.455 0.00 0.00 0.00 3.01
253 254 3.075882 TCCAAACCATCCAATCCAGAACT 59.924 43.478 0.00 0.00 0.00 3.01
254 255 3.445096 CCAAACCATCCAATCCAGAACTC 59.555 47.826 0.00 0.00 0.00 3.01
255 256 2.698855 ACCATCCAATCCAGAACTCG 57.301 50.000 0.00 0.00 0.00 4.18
256 257 1.303309 CCATCCAATCCAGAACTCGC 58.697 55.000 0.00 0.00 0.00 5.03
257 258 1.407299 CCATCCAATCCAGAACTCGCA 60.407 52.381 0.00 0.00 0.00 5.10
258 259 2.569059 CATCCAATCCAGAACTCGCAT 58.431 47.619 0.00 0.00 0.00 4.73
259 260 2.028420 TCCAATCCAGAACTCGCATG 57.972 50.000 0.00 0.00 0.00 4.06
260 261 1.278985 TCCAATCCAGAACTCGCATGT 59.721 47.619 0.00 0.00 0.00 3.21
261 262 1.399440 CCAATCCAGAACTCGCATGTG 59.601 52.381 0.00 0.00 0.00 3.21
262 263 1.089920 AATCCAGAACTCGCATGTGC 58.910 50.000 0.00 0.00 37.78 4.57
263 264 0.251354 ATCCAGAACTCGCATGTGCT 59.749 50.000 0.00 0.00 39.32 4.40
264 265 0.894835 TCCAGAACTCGCATGTGCTA 59.105 50.000 0.00 0.00 39.32 3.49
265 266 1.275010 TCCAGAACTCGCATGTGCTAA 59.725 47.619 0.00 0.00 39.32 3.09
266 267 2.076100 CCAGAACTCGCATGTGCTAAA 58.924 47.619 0.00 0.00 39.32 1.85
267 268 2.094894 CCAGAACTCGCATGTGCTAAAG 59.905 50.000 0.00 0.00 39.32 1.85
268 269 2.094894 CAGAACTCGCATGTGCTAAAGG 59.905 50.000 0.00 0.00 39.32 3.11
269 270 2.028112 AGAACTCGCATGTGCTAAAGGA 60.028 45.455 0.00 0.00 39.32 3.36
270 271 2.015736 ACTCGCATGTGCTAAAGGAG 57.984 50.000 0.00 4.64 39.32 3.69
271 272 1.550524 ACTCGCATGTGCTAAAGGAGA 59.449 47.619 11.89 0.00 39.32 3.71
272 273 2.169352 ACTCGCATGTGCTAAAGGAGAT 59.831 45.455 11.89 0.00 39.32 2.75
273 274 2.543012 CTCGCATGTGCTAAAGGAGATG 59.457 50.000 0.00 4.52 39.54 2.90
274 275 2.168313 TCGCATGTGCTAAAGGAGATGA 59.832 45.455 11.95 0.00 39.01 2.92
275 276 2.938451 CGCATGTGCTAAAGGAGATGAA 59.062 45.455 11.95 0.00 39.01 2.57
276 277 3.562973 CGCATGTGCTAAAGGAGATGAAT 59.437 43.478 11.95 0.00 39.01 2.57
277 278 4.036027 CGCATGTGCTAAAGGAGATGAATT 59.964 41.667 11.95 0.00 39.01 2.17
278 279 5.237127 CGCATGTGCTAAAGGAGATGAATTA 59.763 40.000 11.95 0.00 39.01 1.40
279 280 6.238456 CGCATGTGCTAAAGGAGATGAATTAA 60.238 38.462 11.95 0.00 39.01 1.40
280 281 7.483307 GCATGTGCTAAAGGAGATGAATTAAA 58.517 34.615 11.95 0.00 39.01 1.52
281 282 8.139989 GCATGTGCTAAAGGAGATGAATTAAAT 58.860 33.333 11.95 0.00 39.01 1.40
282 283 9.459640 CATGTGCTAAAGGAGATGAATTAAATG 57.540 33.333 2.93 0.00 39.01 2.32
283 284 8.806429 TGTGCTAAAGGAGATGAATTAAATGA 57.194 30.769 0.00 0.00 0.00 2.57
284 285 8.896744 TGTGCTAAAGGAGATGAATTAAATGAG 58.103 33.333 0.00 0.00 0.00 2.90
285 286 8.348507 GTGCTAAAGGAGATGAATTAAATGAGG 58.651 37.037 0.00 0.00 0.00 3.86
286 287 8.274322 TGCTAAAGGAGATGAATTAAATGAGGA 58.726 33.333 0.00 0.00 0.00 3.71
287 288 8.782144 GCTAAAGGAGATGAATTAAATGAGGAG 58.218 37.037 0.00 0.00 0.00 3.69
289 290 8.977267 AAAGGAGATGAATTAAATGAGGAGAG 57.023 34.615 0.00 0.00 0.00 3.20
290 291 7.927683 AGGAGATGAATTAAATGAGGAGAGA 57.072 36.000 0.00 0.00 0.00 3.10
291 292 7.965718 AGGAGATGAATTAAATGAGGAGAGAG 58.034 38.462 0.00 0.00 0.00 3.20
292 293 7.788867 AGGAGATGAATTAAATGAGGAGAGAGA 59.211 37.037 0.00 0.00 0.00 3.10
293 294 8.090214 GGAGATGAATTAAATGAGGAGAGAGAG 58.910 40.741 0.00 0.00 0.00 3.20
294 295 7.965718 AGATGAATTAAATGAGGAGAGAGAGG 58.034 38.462 0.00 0.00 0.00 3.69
295 296 6.491714 TGAATTAAATGAGGAGAGAGAGGG 57.508 41.667 0.00 0.00 0.00 4.30
296 297 4.972751 ATTAAATGAGGAGAGAGAGGGC 57.027 45.455 0.00 0.00 0.00 5.19
297 298 2.566708 AAATGAGGAGAGAGAGGGCT 57.433 50.000 0.00 0.00 0.00 5.19
298 299 3.697190 AAATGAGGAGAGAGAGGGCTA 57.303 47.619 0.00 0.00 0.00 3.93
299 300 3.697190 AATGAGGAGAGAGAGGGCTAA 57.303 47.619 0.00 0.00 0.00 3.09
300 301 3.921287 ATGAGGAGAGAGAGGGCTAAT 57.079 47.619 0.00 0.00 0.00 1.73
301 302 5.346782 AATGAGGAGAGAGAGGGCTAATA 57.653 43.478 0.00 0.00 0.00 0.98
302 303 4.107127 TGAGGAGAGAGAGGGCTAATAC 57.893 50.000 0.00 0.00 0.00 1.89
303 304 3.463704 TGAGGAGAGAGAGGGCTAATACA 59.536 47.826 0.00 0.00 0.00 2.29
304 305 4.107149 TGAGGAGAGAGAGGGCTAATACAT 59.893 45.833 0.00 0.00 0.00 2.29
305 306 5.313506 TGAGGAGAGAGAGGGCTAATACATA 59.686 44.000 0.00 0.00 0.00 2.29
306 307 6.011185 TGAGGAGAGAGAGGGCTAATACATAT 60.011 42.308 0.00 0.00 0.00 1.78
307 308 6.810500 AGGAGAGAGAGGGCTAATACATATT 58.189 40.000 0.00 0.00 0.00 1.28
308 309 7.252678 AGGAGAGAGAGGGCTAATACATATTT 58.747 38.462 0.00 0.00 0.00 1.40
309 310 7.737149 AGGAGAGAGAGGGCTAATACATATTTT 59.263 37.037 0.00 0.00 0.00 1.82
310 311 9.036980 GGAGAGAGAGGGCTAATACATATTTTA 57.963 37.037 0.00 0.00 0.00 1.52
312 313 9.608718 AGAGAGAGGGCTAATACATATTTTAGT 57.391 33.333 0.00 0.00 0.00 2.24
316 317 9.617053 AGAGGGCTAATACATATTTTAGTAGGT 57.383 33.333 0.00 0.00 0.00 3.08
327 328 9.959721 ACATATTTTAGTAGGTTTCATGTGACT 57.040 29.630 0.00 0.00 0.00 3.41
356 357 9.569122 AAAATTTTAGCCTCAAGACTAGTTACA 57.431 29.630 0.37 0.00 0.00 2.41
357 358 8.779354 AATTTTAGCCTCAAGACTAGTTACAG 57.221 34.615 0.00 0.00 0.00 2.74
358 359 3.878160 AGCCTCAAGACTAGTTACAGC 57.122 47.619 0.00 0.00 0.00 4.40
359 360 2.498078 AGCCTCAAGACTAGTTACAGCC 59.502 50.000 0.00 0.00 0.00 4.85
360 361 2.498078 GCCTCAAGACTAGTTACAGCCT 59.502 50.000 0.00 0.00 0.00 4.58
361 362 3.429684 GCCTCAAGACTAGTTACAGCCTC 60.430 52.174 0.00 0.00 0.00 4.70
362 363 4.020543 CCTCAAGACTAGTTACAGCCTCT 58.979 47.826 0.00 0.00 0.00 3.69
363 364 4.097286 CCTCAAGACTAGTTACAGCCTCTC 59.903 50.000 0.00 0.00 0.00 3.20
364 365 4.924625 TCAAGACTAGTTACAGCCTCTCT 58.075 43.478 0.00 0.00 0.00 3.10
365 366 5.326069 TCAAGACTAGTTACAGCCTCTCTT 58.674 41.667 0.00 0.00 0.00 2.85
366 367 5.775701 TCAAGACTAGTTACAGCCTCTCTTT 59.224 40.000 0.00 0.00 0.00 2.52
367 368 6.946583 TCAAGACTAGTTACAGCCTCTCTTTA 59.053 38.462 0.00 0.00 0.00 1.85
368 369 7.121463 TCAAGACTAGTTACAGCCTCTCTTTAG 59.879 40.741 0.00 0.00 0.00 1.85
369 370 6.486941 AGACTAGTTACAGCCTCTCTTTAGT 58.513 40.000 0.00 0.00 0.00 2.24
370 371 6.600427 AGACTAGTTACAGCCTCTCTTTAGTC 59.400 42.308 0.00 0.00 36.42 2.59
371 372 6.246919 ACTAGTTACAGCCTCTCTTTAGTCA 58.753 40.000 0.00 0.00 0.00 3.41
372 373 5.652994 AGTTACAGCCTCTCTTTAGTCAG 57.347 43.478 0.00 0.00 0.00 3.51
373 374 4.464597 AGTTACAGCCTCTCTTTAGTCAGG 59.535 45.833 0.00 0.00 0.00 3.86
374 375 2.183679 ACAGCCTCTCTTTAGTCAGGG 58.816 52.381 0.00 0.00 0.00 4.45
375 376 1.484240 CAGCCTCTCTTTAGTCAGGGG 59.516 57.143 0.00 0.00 0.00 4.79
376 377 1.079658 AGCCTCTCTTTAGTCAGGGGT 59.920 52.381 0.00 0.00 0.00 4.95
377 378 1.208293 GCCTCTCTTTAGTCAGGGGTG 59.792 57.143 0.00 0.00 0.00 4.61
378 379 1.208293 CCTCTCTTTAGTCAGGGGTGC 59.792 57.143 0.00 0.00 0.00 5.01
379 380 2.183679 CTCTCTTTAGTCAGGGGTGCT 58.816 52.381 0.00 0.00 0.00 4.40
380 381 2.569404 CTCTCTTTAGTCAGGGGTGCTT 59.431 50.000 0.00 0.00 0.00 3.91
381 382 2.303022 TCTCTTTAGTCAGGGGTGCTTG 59.697 50.000 0.00 0.00 0.00 4.01
382 383 1.168714 CTTTAGTCAGGGGTGCTTGC 58.831 55.000 0.00 0.00 0.00 4.01
383 384 0.476338 TTTAGTCAGGGGTGCTTGCA 59.524 50.000 0.00 0.00 0.00 4.08
384 385 0.476338 TTAGTCAGGGGTGCTTGCAA 59.524 50.000 0.00 0.00 0.00 4.08
385 386 0.250727 TAGTCAGGGGTGCTTGCAAC 60.251 55.000 1.44 1.44 0.00 4.17
386 387 1.529244 GTCAGGGGTGCTTGCAACT 60.529 57.895 10.60 0.73 0.00 3.16
387 388 1.109323 GTCAGGGGTGCTTGCAACTT 61.109 55.000 10.60 0.00 0.00 2.66
388 389 0.396974 TCAGGGGTGCTTGCAACTTT 60.397 50.000 10.60 0.00 0.00 2.66
389 390 1.133637 TCAGGGGTGCTTGCAACTTTA 60.134 47.619 10.60 0.00 0.00 1.85
390 391 1.270550 CAGGGGTGCTTGCAACTTTAG 59.729 52.381 10.60 0.00 0.00 1.85
391 392 0.038251 GGGGTGCTTGCAACTTTAGC 60.038 55.000 10.60 0.00 35.50 3.09
392 393 0.038251 GGGTGCTTGCAACTTTAGCC 60.038 55.000 10.60 3.03 34.03 3.93
393 394 0.961753 GGTGCTTGCAACTTTAGCCT 59.038 50.000 3.07 0.00 34.03 4.58
394 395 1.068264 GGTGCTTGCAACTTTAGCCTC 60.068 52.381 3.07 0.00 34.03 4.70
395 396 1.882623 GTGCTTGCAACTTTAGCCTCT 59.117 47.619 4.93 0.00 34.03 3.69
396 397 3.074412 GTGCTTGCAACTTTAGCCTCTA 58.926 45.455 4.93 0.00 34.03 2.43
397 398 3.502211 GTGCTTGCAACTTTAGCCTCTAA 59.498 43.478 4.93 0.00 34.03 2.10
398 399 4.023193 GTGCTTGCAACTTTAGCCTCTAAA 60.023 41.667 4.93 0.00 34.03 1.85
399 400 4.582656 TGCTTGCAACTTTAGCCTCTAAAA 59.417 37.500 4.93 0.00 34.03 1.52
400 401 5.157067 GCTTGCAACTTTAGCCTCTAAAAG 58.843 41.667 0.00 0.00 38.41 2.27
401 402 5.048713 GCTTGCAACTTTAGCCTCTAAAAGA 60.049 40.000 0.00 0.00 36.43 2.52
402 403 6.560253 TTGCAACTTTAGCCTCTAAAAGAG 57.440 37.500 0.00 0.00 41.96 2.85
403 404 5.865085 TGCAACTTTAGCCTCTAAAAGAGA 58.135 37.500 5.50 0.00 45.07 3.10
404 405 5.701290 TGCAACTTTAGCCTCTAAAAGAGAC 59.299 40.000 5.50 0.00 45.07 3.36
405 406 5.935206 GCAACTTTAGCCTCTAAAAGAGACT 59.065 40.000 5.50 1.89 45.07 3.24
406 407 7.097834 GCAACTTTAGCCTCTAAAAGAGACTA 58.902 38.462 5.50 0.91 45.07 2.59
407 408 7.766738 GCAACTTTAGCCTCTAAAAGAGACTAT 59.233 37.037 5.50 0.00 45.07 2.12
408 409 9.660180 CAACTTTAGCCTCTAAAAGAGACTATT 57.340 33.333 5.50 0.00 45.07 1.73
436 437 9.681062 TTAATCAGACTAAAAATAGTCCCTTGG 57.319 33.333 11.35 0.00 45.66 3.61
437 438 6.945636 TCAGACTAAAAATAGTCCCTTGGA 57.054 37.500 11.35 1.82 45.66 3.53
438 439 7.510675 TCAGACTAAAAATAGTCCCTTGGAT 57.489 36.000 11.35 0.00 45.66 3.41
439 440 7.565680 TCAGACTAAAAATAGTCCCTTGGATC 58.434 38.462 11.35 0.00 45.66 3.36
440 441 6.768381 CAGACTAAAAATAGTCCCTTGGATCC 59.232 42.308 4.20 4.20 45.66 3.36
441 442 6.447084 AGACTAAAAATAGTCCCTTGGATCCA 59.553 38.462 11.44 11.44 45.66 3.41
442 443 7.036863 AGACTAAAAATAGTCCCTTGGATCCAA 60.037 37.037 25.53 25.53 45.66 3.53
443 444 7.283354 GACTAAAAATAGTCCCTTGGATCCAAG 59.717 40.741 37.68 37.68 42.75 3.61
449 450 3.930504 CTTGGATCCAAGCAGGCC 58.069 61.111 35.47 0.00 45.38 5.19
486 487 7.657761 CCTAACTGACTTTTGACTACATCTTGT 59.342 37.037 0.00 0.00 0.00 3.16
487 488 6.851222 ACTGACTTTTGACTACATCTTGTG 57.149 37.500 0.00 0.00 0.00 3.33
499 500 2.810274 ACATCTTGTGCATGTCTGTGTC 59.190 45.455 0.00 0.00 27.49 3.67
503 504 4.248058 TCTTGTGCATGTCTGTGTCATAG 58.752 43.478 0.00 0.00 0.00 2.23
508 509 4.092529 GTGCATGTCTGTGTCATAGTCTTG 59.907 45.833 0.00 1.76 0.00 3.02
510 511 4.092529 GCATGTCTGTGTCATAGTCTTGTG 59.907 45.833 9.86 2.84 0.00 3.33
536 538 3.125316 TCAAGTACAGTTAACGTGCACC 58.875 45.455 12.15 0.00 0.00 5.01
564 566 2.227388 GTGAACTTTGTCCTGGATGCAG 59.773 50.000 7.35 7.35 0.00 4.41
605 607 8.422566 CCTAGCTAGCAACCTATACTAAAACTT 58.577 37.037 18.83 0.00 0.00 2.66
626 628 3.844640 TGAGGCCTAGTGATGCATACTA 58.155 45.455 4.42 7.43 0.00 1.82
627 629 3.574396 TGAGGCCTAGTGATGCATACTAC 59.426 47.826 4.42 0.00 0.00 2.73
628 630 3.829601 GAGGCCTAGTGATGCATACTACT 59.170 47.826 4.42 7.56 0.00 2.57
701 703 1.886886 TAAGGGCAAACTCACGGTTC 58.113 50.000 0.00 0.00 37.12 3.62
863 865 3.458189 GTGCAGCGGGCTTATATATAGG 58.542 50.000 5.05 0.00 45.15 2.57
865 867 2.224305 GCAGCGGGCTTATATATAGGGG 60.224 54.545 4.23 0.00 40.25 4.79
866 868 3.039011 CAGCGGGCTTATATATAGGGGT 58.961 50.000 4.23 0.00 0.00 4.95
900 902 0.104620 AGTCCCACCACCCTACAACT 60.105 55.000 0.00 0.00 0.00 3.16
912 917 3.636300 ACCCTACAACTACACACGTACAA 59.364 43.478 0.00 0.00 0.00 2.41
939 944 2.420722 AGCACGAACTGTCTAGTAGCTC 59.579 50.000 0.00 0.00 35.69 4.09
1048 1056 0.538287 GTTCTTGCTCCTGGTGGCTT 60.538 55.000 13.37 0.00 0.00 4.35
1071 1079 1.367840 GACCACCGTGCTGACTTCT 59.632 57.895 0.00 0.00 0.00 2.85
1237 1245 2.482333 CCCGGGCACTAGAGAGACG 61.482 68.421 8.08 0.00 0.00 4.18
1257 1265 0.673985 GAGGTGCAAGAAACAACCCC 59.326 55.000 0.00 0.00 0.00 4.95
1277 1285 5.222379 ACCCCAGAGAGAGTATTCCTATACC 60.222 48.000 0.00 0.00 37.87 2.73
1296 1304 7.343833 CCTATACCTAAGTTTGTACTTCTCCCA 59.656 40.741 0.00 0.00 43.45 4.37
1329 1343 3.313803 TGTGTAGTGTTACGTACGTTCCA 59.686 43.478 27.92 19.60 32.21 3.53
1330 1344 3.664025 GTGTAGTGTTACGTACGTTCCAC 59.336 47.826 27.92 28.26 32.21 4.02
1379 1396 6.982141 ACATGTGTACGAACAATAATACGGAT 59.018 34.615 0.00 0.00 37.36 4.18
1384 1401 7.167968 GTGTACGAACAATAATACGGATGCTAA 59.832 37.037 0.00 0.00 37.36 3.09
1417 1434 3.311110 ACGGCGGTCATGTGAGGT 61.311 61.111 13.24 0.00 0.00 3.85
1424 1441 2.293399 GCGGTCATGTGAGGTTCTTTTT 59.707 45.455 0.00 0.00 0.00 1.94
1486 1503 4.742659 GTCGATTGCTTCTCAGTCTAATCC 59.257 45.833 0.00 0.00 30.09 3.01
1604 1633 4.497674 CCAACCGTCCGACAAATTTTAACA 60.498 41.667 0.00 0.00 0.00 2.41
1606 1635 5.246145 ACCGTCCGACAAATTTTAACAAA 57.754 34.783 0.00 0.00 0.00 2.83
1607 1636 5.036090 ACCGTCCGACAAATTTTAACAAAC 58.964 37.500 0.00 0.00 0.00 2.93
1610 1639 6.075257 CCGTCCGACAAATTTTAACAAACTTC 60.075 38.462 0.00 0.00 0.00 3.01
1721 1750 4.135153 CTGGCCCTCCGTCTCACG 62.135 72.222 0.00 0.00 42.11 4.35
1780 1809 2.159338 AGCGGCTAAAAAGTCGTCGATA 60.159 45.455 0.00 0.00 39.34 2.92
1791 1820 6.636562 AAAGTCGTCGATATAGACCAGAAT 57.363 37.500 10.01 0.24 37.85 2.40
1792 1821 5.614923 AGTCGTCGATATAGACCAGAATG 57.385 43.478 10.01 0.00 37.85 2.67
1813 1846 0.955428 GCCAGCAACAACGATCTGGA 60.955 55.000 10.95 0.00 46.80 3.86
1825 1858 4.963318 ACGATCTGGACATATCACCATT 57.037 40.909 0.00 0.00 35.54 3.16
1832 1865 0.771127 ACATATCACCATTCCGGGGG 59.229 55.000 0.00 3.56 39.52 5.40
1843 1876 2.123425 CCGGGGGAGCTAGCACTA 60.123 66.667 18.83 0.00 0.00 2.74
1863 1896 6.995091 GCACTAAGGATGGACAGAAGATAATT 59.005 38.462 0.00 0.00 0.00 1.40
1898 1931 6.299141 CCATATAGAGTTAGGGCACACAAAT 58.701 40.000 0.00 0.00 0.00 2.32
1903 1936 2.038557 AGTTAGGGCACACAAATCTCGT 59.961 45.455 0.00 0.00 0.00 4.18
1904 1937 3.259876 AGTTAGGGCACACAAATCTCGTA 59.740 43.478 0.00 0.00 0.00 3.43
1915 1948 6.632834 CACACAAATCTCGTAAGTTTTTGGAG 59.367 38.462 0.00 0.00 34.19 3.86
1916 1949 6.540914 ACACAAATCTCGTAAGTTTTTGGAGA 59.459 34.615 0.00 0.00 38.06 3.71
1917 1950 7.072030 CACAAATCTCGTAAGTTTTTGGAGAG 58.928 38.462 0.00 0.00 37.20 3.20
1918 1951 5.864628 AATCTCGTAAGTTTTTGGAGAGC 57.135 39.130 0.00 0.00 37.20 4.09
1919 1952 3.660865 TCTCGTAAGTTTTTGGAGAGCC 58.339 45.455 0.00 0.00 39.48 4.70
1920 1953 3.323979 TCTCGTAAGTTTTTGGAGAGCCT 59.676 43.478 0.00 0.00 39.48 4.58
1930 1965 1.482954 TGGAGAGCCTCATCTGACTG 58.517 55.000 0.00 0.00 34.31 3.51
1939 1974 3.719924 CCTCATCTGACTGAGCTTCATC 58.280 50.000 9.97 0.00 41.12 2.92
1940 1975 3.373849 CTCATCTGACTGAGCTTCATCG 58.626 50.000 0.00 0.00 36.53 3.84
1954 1989 3.786635 CTTCATCGAACGGAGAAGGAAT 58.213 45.455 15.73 0.00 35.13 3.01
1977 2013 7.649533 ATCAGAGAATAAAACATGCCATGAA 57.350 32.000 12.53 0.00 0.00 2.57
1983 2019 3.706600 AAAACATGCCATGAAGCCATT 57.293 38.095 12.53 0.00 0.00 3.16
1988 2024 2.519771 TGCCATGAAGCCATTCTCTT 57.480 45.000 0.00 0.00 36.33 2.85
1996 2032 5.441718 TGAAGCCATTCTCTTTGTAGGAT 57.558 39.130 0.00 0.00 36.33 3.24
1998 2034 3.549794 AGCCATTCTCTTTGTAGGATGC 58.450 45.455 0.00 0.00 0.00 3.91
2043 2095 2.369394 GCCAAGATTTACCCTGACTGG 58.631 52.381 0.00 0.00 0.00 4.00
2047 2099 4.506625 CCAAGATTTACCCTGACTGGAACA 60.507 45.833 0.00 0.00 38.35 3.18
2054 2106 0.535102 CCTGACTGGAACACCACACC 60.535 60.000 0.00 0.00 38.35 4.16
2076 2128 3.368323 CCCCTCATACAATGGCAAACAAC 60.368 47.826 0.00 0.00 0.00 3.32
2077 2129 3.257873 CCCTCATACAATGGCAAACAACA 59.742 43.478 0.00 0.00 0.00 3.33
2084 2136 2.924926 CAATGGCAAACAACATCGATGG 59.075 45.455 28.09 14.45 0.00 3.51
2087 2139 2.625314 TGGCAAACAACATCGATGGAAA 59.375 40.909 28.09 1.88 0.00 3.13
2100 2152 1.488705 ATGGAAACGAGGCCAGGACA 61.489 55.000 5.01 0.00 37.64 4.02
2119 2171 6.877855 CAGGACATGGTGATATTATTCCTCAG 59.122 42.308 0.00 0.00 29.44 3.35
2120 2172 6.013032 AGGACATGGTGATATTATTCCTCAGG 60.013 42.308 0.00 0.00 0.00 3.86
2121 2173 5.564550 ACATGGTGATATTATTCCTCAGGC 58.435 41.667 0.00 0.00 0.00 4.85
2122 2174 4.640771 TGGTGATATTATTCCTCAGGCC 57.359 45.455 0.00 0.00 0.00 5.19
2123 2175 3.980022 TGGTGATATTATTCCTCAGGCCA 59.020 43.478 5.01 0.00 0.00 5.36
2124 2176 4.415179 TGGTGATATTATTCCTCAGGCCAA 59.585 41.667 5.01 0.00 0.00 4.52
2125 2177 4.762251 GGTGATATTATTCCTCAGGCCAAC 59.238 45.833 5.01 0.00 0.00 3.77
2126 2178 5.456763 GGTGATATTATTCCTCAGGCCAACT 60.457 44.000 5.01 0.00 0.00 3.16
2127 2179 5.703130 GTGATATTATTCCTCAGGCCAACTC 59.297 44.000 5.01 0.00 0.00 3.01
2128 2180 3.584733 ATTATTCCTCAGGCCAACTCC 57.415 47.619 5.01 0.00 0.00 3.85
2129 2181 1.965414 TATTCCTCAGGCCAACTCCA 58.035 50.000 5.01 0.00 0.00 3.86
2130 2182 0.329596 ATTCCTCAGGCCAACTCCAC 59.670 55.000 5.01 0.00 0.00 4.02
2131 2183 1.779061 TTCCTCAGGCCAACTCCACC 61.779 60.000 5.01 0.00 0.00 4.61
2132 2184 2.046892 CTCAGGCCAACTCCACCG 60.047 66.667 5.01 0.00 0.00 4.94
2133 2185 4.329545 TCAGGCCAACTCCACCGC 62.330 66.667 5.01 0.00 0.00 5.68
2134 2186 4.641645 CAGGCCAACTCCACCGCA 62.642 66.667 5.01 0.00 0.00 5.69
2135 2187 4.643387 AGGCCAACTCCACCGCAC 62.643 66.667 5.01 0.00 0.00 5.34
2137 2189 4.980805 GCCAACTCCACCGCACGA 62.981 66.667 0.00 0.00 0.00 4.35
2138 2190 3.041940 CCAACTCCACCGCACGAC 61.042 66.667 0.00 0.00 0.00 4.34
2139 2191 3.041940 CAACTCCACCGCACGACC 61.042 66.667 0.00 0.00 0.00 4.79
2140 2192 4.309950 AACTCCACCGCACGACCC 62.310 66.667 0.00 0.00 0.00 4.46
2142 2194 3.066190 CTCCACCGCACGACCCTA 61.066 66.667 0.00 0.00 0.00 3.53
2143 2195 2.363276 TCCACCGCACGACCCTAT 60.363 61.111 0.00 0.00 0.00 2.57
2144 2196 2.106332 CCACCGCACGACCCTATC 59.894 66.667 0.00 0.00 0.00 2.08
2145 2197 2.717044 CCACCGCACGACCCTATCA 61.717 63.158 0.00 0.00 0.00 2.15
2146 2198 1.441729 CACCGCACGACCCTATCAT 59.558 57.895 0.00 0.00 0.00 2.45
2147 2199 0.875908 CACCGCACGACCCTATCATG 60.876 60.000 0.00 0.00 0.00 3.07
2148 2200 1.327690 ACCGCACGACCCTATCATGT 61.328 55.000 0.00 0.00 0.00 3.21
2149 2201 0.597637 CCGCACGACCCTATCATGTC 60.598 60.000 0.00 0.00 0.00 3.06
2150 2202 0.597637 CGCACGACCCTATCATGTCC 60.598 60.000 0.00 0.00 0.00 4.02
2151 2203 0.597637 GCACGACCCTATCATGTCCG 60.598 60.000 0.00 0.00 0.00 4.79
2152 2204 0.597637 CACGACCCTATCATGTCCGC 60.598 60.000 0.00 0.00 0.00 5.54
2153 2205 1.006102 CGACCCTATCATGTCCGCC 60.006 63.158 0.00 0.00 0.00 6.13
2154 2206 1.371558 GACCCTATCATGTCCGCCC 59.628 63.158 0.00 0.00 0.00 6.13
2155 2207 2.113243 GACCCTATCATGTCCGCCCC 62.113 65.000 0.00 0.00 0.00 5.80
2156 2208 2.750350 CCTATCATGTCCGCCCCC 59.250 66.667 0.00 0.00 0.00 5.40
2157 2209 2.343758 CTATCATGTCCGCCCCCG 59.656 66.667 0.00 0.00 0.00 5.73
2158 2210 2.445085 TATCATGTCCGCCCCCGT 60.445 61.111 0.00 0.00 0.00 5.28
2159 2211 2.436087 CTATCATGTCCGCCCCCGTC 62.436 65.000 0.00 0.00 0.00 4.79
2164 2216 4.419921 GTCCGCCCCCGTCCATTT 62.420 66.667 0.00 0.00 0.00 2.32
2165 2217 4.418328 TCCGCCCCCGTCCATTTG 62.418 66.667 0.00 0.00 0.00 2.32
2172 2224 3.674029 CCCGTCCATTTGGGGTAAA 57.326 52.632 0.00 0.00 42.05 2.01
2173 2225 1.926108 CCCGTCCATTTGGGGTAAAA 58.074 50.000 0.00 0.00 42.05 1.52
2174 2226 1.822371 CCCGTCCATTTGGGGTAAAAG 59.178 52.381 0.00 0.00 42.05 2.27
2175 2227 1.822371 CCGTCCATTTGGGGTAAAAGG 59.178 52.381 0.00 0.00 38.24 3.11
2176 2228 1.822371 CGTCCATTTGGGGTAAAAGGG 59.178 52.381 0.00 0.00 41.32 3.95
2177 2229 2.555670 CGTCCATTTGGGGTAAAAGGGA 60.556 50.000 0.00 0.00 45.17 4.20
2178 2230 3.178412 TCCATTTGGGGTAAAAGGGAC 57.822 47.619 0.00 0.00 43.18 4.46
2179 2231 2.451273 TCCATTTGGGGTAAAAGGGACA 59.549 45.455 0.00 0.00 43.18 4.02
2180 2232 2.831526 CCATTTGGGGTAAAAGGGACAG 59.168 50.000 0.00 0.00 42.30 3.51
2181 2233 3.501385 CCATTTGGGGTAAAAGGGACAGA 60.501 47.826 0.00 0.00 42.30 3.41
2182 2234 2.963599 TTGGGGTAAAAGGGACAGAC 57.036 50.000 0.00 0.00 0.00 3.51
2183 2235 0.688487 TGGGGTAAAAGGGACAGACG 59.312 55.000 0.00 0.00 0.00 4.18
2184 2236 0.978907 GGGGTAAAAGGGACAGACGA 59.021 55.000 0.00 0.00 0.00 4.20
2185 2237 1.066358 GGGGTAAAAGGGACAGACGAG 60.066 57.143 0.00 0.00 0.00 4.18
2186 2238 1.897802 GGGTAAAAGGGACAGACGAGA 59.102 52.381 0.00 0.00 0.00 4.04
2187 2239 2.353505 GGGTAAAAGGGACAGACGAGAC 60.354 54.545 0.00 0.00 0.00 3.36
2188 2240 2.593257 GTAAAAGGGACAGACGAGACG 58.407 52.381 0.00 0.00 0.00 4.18
2189 2241 0.317479 AAAAGGGACAGACGAGACGG 59.683 55.000 0.00 0.00 0.00 4.79
2190 2242 2.156051 AAAGGGACAGACGAGACGGC 62.156 60.000 0.00 0.00 33.59 5.68
2191 2243 4.131088 GGGACAGACGAGACGGCC 62.131 72.222 0.00 0.00 34.11 6.13
2192 2244 4.131088 GGACAGACGAGACGGCCC 62.131 72.222 0.00 0.00 34.11 5.80
2193 2245 3.371063 GACAGACGAGACGGCCCA 61.371 66.667 0.00 0.00 34.11 5.36
2194 2246 3.343788 GACAGACGAGACGGCCCAG 62.344 68.421 0.00 0.00 34.11 4.45
2195 2247 4.803426 CAGACGAGACGGCCCAGC 62.803 72.222 0.00 0.00 34.11 4.85
2216 2268 3.656045 CGGGCGCAAACGGACTTT 61.656 61.111 10.83 0.00 40.57 2.66
2217 2269 2.319096 CGGGCGCAAACGGACTTTA 61.319 57.895 10.83 0.00 40.57 1.85
2218 2270 1.500396 GGGCGCAAACGGACTTTAG 59.500 57.895 10.83 0.00 40.57 1.85
2219 2271 1.232621 GGGCGCAAACGGACTTTAGT 61.233 55.000 10.83 0.00 40.57 2.24
2220 2272 0.165295 GGCGCAAACGGACTTTAGTC 59.835 55.000 10.83 1.18 44.04 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.396590 TGCCGTTTGGTTCCTCTATC 57.603 50.000 0.00 0.00 37.67 2.08
62 63 7.716123 GCTTCAAGGAGTAGACTACATACTCTA 59.284 40.741 14.95 0.12 45.56 2.43
81 82 7.712639 TCCTAAATGTATTAGCTGAGCTTCAAG 59.287 37.037 14.14 2.71 40.44 3.02
93 94 5.765182 CCAAGCACCCTCCTAAATGTATTAG 59.235 44.000 0.00 0.00 0.00 1.73
102 103 1.760613 CGTATCCAAGCACCCTCCTAA 59.239 52.381 0.00 0.00 0.00 2.69
103 104 1.342674 ACGTATCCAAGCACCCTCCTA 60.343 52.381 0.00 0.00 0.00 2.94
104 105 0.617820 ACGTATCCAAGCACCCTCCT 60.618 55.000 0.00 0.00 0.00 3.69
105 106 0.252197 AACGTATCCAAGCACCCTCC 59.748 55.000 0.00 0.00 0.00 4.30
106 107 2.109425 AAACGTATCCAAGCACCCTC 57.891 50.000 0.00 0.00 0.00 4.30
107 108 2.579410 AAAACGTATCCAAGCACCCT 57.421 45.000 0.00 0.00 0.00 4.34
108 109 3.340928 ACTAAAACGTATCCAAGCACCC 58.659 45.455 0.00 0.00 0.00 4.61
109 110 3.373130 GGACTAAAACGTATCCAAGCACC 59.627 47.826 0.00 0.00 0.00 5.01
110 111 3.373130 GGGACTAAAACGTATCCAAGCAC 59.627 47.826 0.00 0.00 32.45 4.40
111 112 3.008157 TGGGACTAAAACGTATCCAAGCA 59.992 43.478 0.00 0.00 32.45 3.91
112 113 3.602483 TGGGACTAAAACGTATCCAAGC 58.398 45.455 0.00 0.00 32.45 4.01
113 114 5.293569 GTCATGGGACTAAAACGTATCCAAG 59.706 44.000 0.00 0.00 40.99 3.61
114 115 5.180271 GTCATGGGACTAAAACGTATCCAA 58.820 41.667 0.00 0.00 40.99 3.53
115 116 4.761975 GTCATGGGACTAAAACGTATCCA 58.238 43.478 0.00 0.00 40.99 3.41
131 132 8.801882 TTTAGTCCCATTACTTTTAGTCATGG 57.198 34.615 11.40 11.40 45.26 3.66
134 135 9.856162 AAGTTTTAGTCCCATTACTTTTAGTCA 57.144 29.630 0.00 0.00 0.00 3.41
136 137 8.573885 GCAAGTTTTAGTCCCATTACTTTTAGT 58.426 33.333 0.00 0.00 0.00 2.24
137 138 8.793592 AGCAAGTTTTAGTCCCATTACTTTTAG 58.206 33.333 0.00 0.00 0.00 1.85
138 139 8.700439 AGCAAGTTTTAGTCCCATTACTTTTA 57.300 30.769 0.00 0.00 0.00 1.52
139 140 7.597288 AGCAAGTTTTAGTCCCATTACTTTT 57.403 32.000 0.00 0.00 0.00 2.27
140 141 7.094334 GCTAGCAAGTTTTAGTCCCATTACTTT 60.094 37.037 10.63 0.00 0.00 2.66
141 142 6.374613 GCTAGCAAGTTTTAGTCCCATTACTT 59.625 38.462 10.63 0.00 0.00 2.24
142 143 5.880887 GCTAGCAAGTTTTAGTCCCATTACT 59.119 40.000 10.63 0.00 0.00 2.24
143 144 5.066117 GGCTAGCAAGTTTTAGTCCCATTAC 59.934 44.000 18.24 0.00 0.00 1.89
144 145 5.045140 AGGCTAGCAAGTTTTAGTCCCATTA 60.045 40.000 18.24 0.00 0.00 1.90
145 146 4.017126 GGCTAGCAAGTTTTAGTCCCATT 58.983 43.478 18.24 0.00 0.00 3.16
146 147 3.267031 AGGCTAGCAAGTTTTAGTCCCAT 59.733 43.478 18.24 0.00 0.00 4.00
147 148 2.642807 AGGCTAGCAAGTTTTAGTCCCA 59.357 45.455 18.24 0.00 0.00 4.37
148 149 3.271729 GAGGCTAGCAAGTTTTAGTCCC 58.728 50.000 18.24 0.00 0.00 4.46
149 150 3.685272 GTGAGGCTAGCAAGTTTTAGTCC 59.315 47.826 18.24 0.00 0.00 3.85
150 151 4.570930 AGTGAGGCTAGCAAGTTTTAGTC 58.429 43.478 18.24 0.00 0.00 2.59
151 152 4.040461 TGAGTGAGGCTAGCAAGTTTTAGT 59.960 41.667 18.24 0.00 0.00 2.24
152 153 4.569943 TGAGTGAGGCTAGCAAGTTTTAG 58.430 43.478 18.24 0.00 0.00 1.85
153 154 4.617253 TGAGTGAGGCTAGCAAGTTTTA 57.383 40.909 18.24 0.00 0.00 1.52
154 155 3.492102 TGAGTGAGGCTAGCAAGTTTT 57.508 42.857 18.24 0.00 0.00 2.43
155 156 3.341823 CATGAGTGAGGCTAGCAAGTTT 58.658 45.455 18.24 0.00 0.00 2.66
156 157 2.938756 GCATGAGTGAGGCTAGCAAGTT 60.939 50.000 18.24 0.00 0.00 2.66
157 158 1.406614 GCATGAGTGAGGCTAGCAAGT 60.407 52.381 18.24 4.12 0.00 3.16
158 159 1.134461 AGCATGAGTGAGGCTAGCAAG 60.134 52.381 18.24 0.00 40.84 4.01
159 160 0.907486 AGCATGAGTGAGGCTAGCAA 59.093 50.000 18.24 0.00 40.84 3.91
160 161 0.907486 AAGCATGAGTGAGGCTAGCA 59.093 50.000 18.24 0.00 42.15 3.49
161 162 1.297664 CAAGCATGAGTGAGGCTAGC 58.702 55.000 6.04 6.04 42.15 3.42
162 163 1.483827 TCCAAGCATGAGTGAGGCTAG 59.516 52.381 0.00 0.00 42.15 3.42
163 164 1.571955 TCCAAGCATGAGTGAGGCTA 58.428 50.000 0.00 0.00 42.15 3.93
164 165 0.917533 ATCCAAGCATGAGTGAGGCT 59.082 50.000 0.00 0.00 45.93 4.58
165 166 1.307097 GATCCAAGCATGAGTGAGGC 58.693 55.000 0.00 0.00 0.00 4.70
166 167 1.211212 TGGATCCAAGCATGAGTGAGG 59.789 52.381 13.46 0.00 0.00 3.86
167 168 2.704464 TGGATCCAAGCATGAGTGAG 57.296 50.000 13.46 0.00 0.00 3.51
168 169 3.438216 TTTGGATCCAAGCATGAGTGA 57.562 42.857 25.69 6.45 37.24 3.41
169 170 4.885907 AGTATTTGGATCCAAGCATGAGTG 59.114 41.667 25.69 0.00 37.24 3.51
170 171 5.121380 AGTATTTGGATCCAAGCATGAGT 57.879 39.130 25.69 11.33 37.24 3.41
171 172 7.500227 TCTTTAGTATTTGGATCCAAGCATGAG 59.500 37.037 25.69 17.73 37.24 2.90
172 173 7.345691 TCTTTAGTATTTGGATCCAAGCATGA 58.654 34.615 25.69 12.50 37.24 3.07
173 174 7.500227 TCTCTTTAGTATTTGGATCCAAGCATG 59.500 37.037 25.69 12.43 37.24 4.06
174 175 7.500559 GTCTCTTTAGTATTTGGATCCAAGCAT 59.499 37.037 25.69 19.69 37.24 3.79
175 176 6.823689 GTCTCTTTAGTATTTGGATCCAAGCA 59.176 38.462 25.69 14.00 37.24 3.91
176 177 7.051000 AGTCTCTTTAGTATTTGGATCCAAGC 58.949 38.462 25.69 19.18 37.24 4.01
194 195 9.507329 TGCTCAATAACTTCATTTTAGTCTCTT 57.493 29.630 0.00 0.00 0.00 2.85
195 196 9.678260 ATGCTCAATAACTTCATTTTAGTCTCT 57.322 29.630 0.00 0.00 0.00 3.10
208 209 9.866655 TGGAGGATAATAAATGCTCAATAACTT 57.133 29.630 8.48 0.00 38.10 2.66
209 210 9.866655 TTGGAGGATAATAAATGCTCAATAACT 57.133 29.630 8.48 0.00 38.10 2.24
212 213 9.077885 GGTTTGGAGGATAATAAATGCTCAATA 57.922 33.333 8.48 0.00 38.10 1.90
213 214 7.564660 TGGTTTGGAGGATAATAAATGCTCAAT 59.435 33.333 8.48 0.00 38.10 2.57
214 215 6.894654 TGGTTTGGAGGATAATAAATGCTCAA 59.105 34.615 8.48 0.00 38.10 3.02
215 216 6.430864 TGGTTTGGAGGATAATAAATGCTCA 58.569 36.000 8.48 0.00 38.10 4.26
216 217 6.959639 TGGTTTGGAGGATAATAAATGCTC 57.040 37.500 0.00 0.00 36.02 4.26
217 218 6.494835 GGATGGTTTGGAGGATAATAAATGCT 59.505 38.462 0.00 0.00 0.00 3.79
218 219 6.267471 TGGATGGTTTGGAGGATAATAAATGC 59.733 38.462 0.00 0.00 0.00 3.56
219 220 7.838079 TGGATGGTTTGGAGGATAATAAATG 57.162 36.000 0.00 0.00 0.00 2.32
220 221 9.093458 GATTGGATGGTTTGGAGGATAATAAAT 57.907 33.333 0.00 0.00 0.00 1.40
221 222 7.508977 GGATTGGATGGTTTGGAGGATAATAAA 59.491 37.037 0.00 0.00 0.00 1.40
222 223 7.010160 GGATTGGATGGTTTGGAGGATAATAA 58.990 38.462 0.00 0.00 0.00 1.40
223 224 6.103946 TGGATTGGATGGTTTGGAGGATAATA 59.896 38.462 0.00 0.00 0.00 0.98
224 225 5.103129 TGGATTGGATGGTTTGGAGGATAAT 60.103 40.000 0.00 0.00 0.00 1.28
225 226 4.231658 TGGATTGGATGGTTTGGAGGATAA 59.768 41.667 0.00 0.00 0.00 1.75
226 227 3.790976 TGGATTGGATGGTTTGGAGGATA 59.209 43.478 0.00 0.00 0.00 2.59
227 228 2.586838 TGGATTGGATGGTTTGGAGGAT 59.413 45.455 0.00 0.00 0.00 3.24
228 229 1.999295 TGGATTGGATGGTTTGGAGGA 59.001 47.619 0.00 0.00 0.00 3.71
229 230 2.025037 TCTGGATTGGATGGTTTGGAGG 60.025 50.000 0.00 0.00 0.00 4.30
230 231 3.370840 TCTGGATTGGATGGTTTGGAG 57.629 47.619 0.00 0.00 0.00 3.86
231 232 3.075882 AGTTCTGGATTGGATGGTTTGGA 59.924 43.478 0.00 0.00 0.00 3.53
232 233 3.434309 AGTTCTGGATTGGATGGTTTGG 58.566 45.455 0.00 0.00 0.00 3.28
233 234 3.127548 CGAGTTCTGGATTGGATGGTTTG 59.872 47.826 0.00 0.00 0.00 2.93
234 235 3.347216 CGAGTTCTGGATTGGATGGTTT 58.653 45.455 0.00 0.00 0.00 3.27
235 236 2.941415 GCGAGTTCTGGATTGGATGGTT 60.941 50.000 0.00 0.00 0.00 3.67
236 237 1.407437 GCGAGTTCTGGATTGGATGGT 60.407 52.381 0.00 0.00 0.00 3.55
237 238 1.303309 GCGAGTTCTGGATTGGATGG 58.697 55.000 0.00 0.00 0.00 3.51
238 239 2.028420 TGCGAGTTCTGGATTGGATG 57.972 50.000 0.00 0.00 0.00 3.51
239 240 2.092753 ACATGCGAGTTCTGGATTGGAT 60.093 45.455 0.00 0.00 0.00 3.41
240 241 1.278985 ACATGCGAGTTCTGGATTGGA 59.721 47.619 0.00 0.00 0.00 3.53
241 242 1.399440 CACATGCGAGTTCTGGATTGG 59.601 52.381 0.00 0.00 0.00 3.16
242 243 1.202110 GCACATGCGAGTTCTGGATTG 60.202 52.381 0.00 0.00 0.00 2.67
243 244 1.089920 GCACATGCGAGTTCTGGATT 58.910 50.000 0.00 0.00 0.00 3.01
244 245 2.772739 GCACATGCGAGTTCTGGAT 58.227 52.632 0.00 0.00 0.00 3.41
245 246 4.284123 GCACATGCGAGTTCTGGA 57.716 55.556 0.00 0.00 0.00 3.86
255 256 5.511234 AATTCATCTCCTTTAGCACATGC 57.489 39.130 0.00 0.00 42.49 4.06
256 257 9.459640 CATTTAATTCATCTCCTTTAGCACATG 57.540 33.333 0.00 0.00 0.00 3.21
257 258 9.412460 TCATTTAATTCATCTCCTTTAGCACAT 57.588 29.630 0.00 0.00 0.00 3.21
258 259 8.806429 TCATTTAATTCATCTCCTTTAGCACA 57.194 30.769 0.00 0.00 0.00 4.57
259 260 8.348507 CCTCATTTAATTCATCTCCTTTAGCAC 58.651 37.037 0.00 0.00 0.00 4.40
260 261 8.274322 TCCTCATTTAATTCATCTCCTTTAGCA 58.726 33.333 0.00 0.00 0.00 3.49
261 262 8.682936 TCCTCATTTAATTCATCTCCTTTAGC 57.317 34.615 0.00 0.00 0.00 3.09
264 265 8.776119 TCTCTCCTCATTTAATTCATCTCCTTT 58.224 33.333 0.00 0.00 0.00 3.11
265 266 8.329346 TCTCTCCTCATTTAATTCATCTCCTT 57.671 34.615 0.00 0.00 0.00 3.36
266 267 7.788867 TCTCTCTCCTCATTTAATTCATCTCCT 59.211 37.037 0.00 0.00 0.00 3.69
267 268 7.961351 TCTCTCTCCTCATTTAATTCATCTCC 58.039 38.462 0.00 0.00 0.00 3.71
268 269 8.090214 CCTCTCTCTCCTCATTTAATTCATCTC 58.910 40.741 0.00 0.00 0.00 2.75
269 270 7.016465 CCCTCTCTCTCCTCATTTAATTCATCT 59.984 40.741 0.00 0.00 0.00 2.90
270 271 7.160726 CCCTCTCTCTCCTCATTTAATTCATC 58.839 42.308 0.00 0.00 0.00 2.92
271 272 6.465607 GCCCTCTCTCTCCTCATTTAATTCAT 60.466 42.308 0.00 0.00 0.00 2.57
272 273 5.163258 GCCCTCTCTCTCCTCATTTAATTCA 60.163 44.000 0.00 0.00 0.00 2.57
273 274 5.071653 AGCCCTCTCTCTCCTCATTTAATTC 59.928 44.000 0.00 0.00 0.00 2.17
274 275 4.974501 AGCCCTCTCTCTCCTCATTTAATT 59.025 41.667 0.00 0.00 0.00 1.40
275 276 4.565817 AGCCCTCTCTCTCCTCATTTAAT 58.434 43.478 0.00 0.00 0.00 1.40
276 277 4.000928 AGCCCTCTCTCTCCTCATTTAA 57.999 45.455 0.00 0.00 0.00 1.52
277 278 3.697190 AGCCCTCTCTCTCCTCATTTA 57.303 47.619 0.00 0.00 0.00 1.40
278 279 2.566708 AGCCCTCTCTCTCCTCATTT 57.433 50.000 0.00 0.00 0.00 2.32
279 280 3.697190 TTAGCCCTCTCTCTCCTCATT 57.303 47.619 0.00 0.00 0.00 2.57
280 281 3.921287 ATTAGCCCTCTCTCTCCTCAT 57.079 47.619 0.00 0.00 0.00 2.90
281 282 3.463704 TGTATTAGCCCTCTCTCTCCTCA 59.536 47.826 0.00 0.00 0.00 3.86
282 283 4.107127 TGTATTAGCCCTCTCTCTCCTC 57.893 50.000 0.00 0.00 0.00 3.71
283 284 4.757997 ATGTATTAGCCCTCTCTCTCCT 57.242 45.455 0.00 0.00 0.00 3.69
284 285 7.489239 AAATATGTATTAGCCCTCTCTCTCC 57.511 40.000 0.00 0.00 0.00 3.71
286 287 9.608718 ACTAAAATATGTATTAGCCCTCTCTCT 57.391 33.333 0.00 0.00 33.39 3.10
290 291 9.617053 ACCTACTAAAATATGTATTAGCCCTCT 57.383 33.333 0.00 0.00 33.39 3.69
301 302 9.959721 AGTCACATGAAACCTACTAAAATATGT 57.040 29.630 0.00 0.00 0.00 2.29
330 331 9.569122 TGTAACTAGTCTTGAGGCTAAAATTTT 57.431 29.630 8.75 8.75 0.00 1.82
331 332 9.220767 CTGTAACTAGTCTTGAGGCTAAAATTT 57.779 33.333 0.00 0.00 0.00 1.82
332 333 7.334671 GCTGTAACTAGTCTTGAGGCTAAAATT 59.665 37.037 0.00 0.00 0.00 1.82
333 334 6.819146 GCTGTAACTAGTCTTGAGGCTAAAAT 59.181 38.462 0.00 0.00 0.00 1.82
334 335 6.164176 GCTGTAACTAGTCTTGAGGCTAAAA 58.836 40.000 0.00 0.00 0.00 1.52
335 336 5.337330 GGCTGTAACTAGTCTTGAGGCTAAA 60.337 44.000 0.00 0.00 0.00 1.85
336 337 4.159879 GGCTGTAACTAGTCTTGAGGCTAA 59.840 45.833 0.00 0.00 0.00 3.09
337 338 3.700038 GGCTGTAACTAGTCTTGAGGCTA 59.300 47.826 0.00 0.00 0.00 3.93
338 339 2.498078 GGCTGTAACTAGTCTTGAGGCT 59.502 50.000 0.00 0.00 0.00 4.58
339 340 2.498078 AGGCTGTAACTAGTCTTGAGGC 59.502 50.000 0.00 2.84 0.00 4.70
340 341 4.020543 AGAGGCTGTAACTAGTCTTGAGG 58.979 47.826 0.00 0.00 31.60 3.86
341 342 4.947388 AGAGAGGCTGTAACTAGTCTTGAG 59.053 45.833 0.00 0.00 31.60 3.02
342 343 4.924625 AGAGAGGCTGTAACTAGTCTTGA 58.075 43.478 0.00 0.00 31.60 3.02
343 344 5.652994 AAGAGAGGCTGTAACTAGTCTTG 57.347 43.478 0.00 0.00 31.60 3.02
344 345 6.949463 ACTAAAGAGAGGCTGTAACTAGTCTT 59.051 38.462 0.00 0.00 31.60 3.01
345 346 6.486941 ACTAAAGAGAGGCTGTAACTAGTCT 58.513 40.000 0.00 0.00 34.80 3.24
346 347 6.374894 TGACTAAAGAGAGGCTGTAACTAGTC 59.625 42.308 14.57 14.57 0.00 2.59
347 348 6.246919 TGACTAAAGAGAGGCTGTAACTAGT 58.753 40.000 0.00 0.00 0.00 2.57
348 349 6.183360 CCTGACTAAAGAGAGGCTGTAACTAG 60.183 46.154 0.00 0.00 0.00 2.57
349 350 5.652891 CCTGACTAAAGAGAGGCTGTAACTA 59.347 44.000 0.00 0.00 0.00 2.24
350 351 4.464597 CCTGACTAAAGAGAGGCTGTAACT 59.535 45.833 0.00 0.00 0.00 2.24
351 352 4.382147 CCCTGACTAAAGAGAGGCTGTAAC 60.382 50.000 0.00 0.00 0.00 2.50
352 353 3.769844 CCCTGACTAAAGAGAGGCTGTAA 59.230 47.826 0.00 0.00 0.00 2.41
353 354 3.366396 CCCTGACTAAAGAGAGGCTGTA 58.634 50.000 0.00 0.00 0.00 2.74
354 355 2.183679 CCCTGACTAAAGAGAGGCTGT 58.816 52.381 0.00 0.00 0.00 4.40
355 356 1.484240 CCCCTGACTAAAGAGAGGCTG 59.516 57.143 0.00 0.00 0.00 4.85
356 357 1.079658 ACCCCTGACTAAAGAGAGGCT 59.920 52.381 0.00 0.00 0.00 4.58
357 358 1.208293 CACCCCTGACTAAAGAGAGGC 59.792 57.143 0.00 0.00 0.00 4.70
358 359 1.208293 GCACCCCTGACTAAAGAGAGG 59.792 57.143 0.00 0.00 0.00 3.69
359 360 2.183679 AGCACCCCTGACTAAAGAGAG 58.816 52.381 0.00 0.00 0.00 3.20
360 361 2.303022 CAAGCACCCCTGACTAAAGAGA 59.697 50.000 0.00 0.00 0.00 3.10
361 362 2.704572 CAAGCACCCCTGACTAAAGAG 58.295 52.381 0.00 0.00 0.00 2.85
362 363 1.271379 GCAAGCACCCCTGACTAAAGA 60.271 52.381 0.00 0.00 0.00 2.52
363 364 1.168714 GCAAGCACCCCTGACTAAAG 58.831 55.000 0.00 0.00 0.00 1.85
364 365 0.476338 TGCAAGCACCCCTGACTAAA 59.524 50.000 0.00 0.00 0.00 1.85
365 366 0.476338 TTGCAAGCACCCCTGACTAA 59.524 50.000 0.00 0.00 0.00 2.24
366 367 0.250727 GTTGCAAGCACCCCTGACTA 60.251 55.000 0.00 0.00 0.00 2.59
367 368 1.529244 GTTGCAAGCACCCCTGACT 60.529 57.895 0.00 0.00 0.00 3.41
368 369 1.109323 AAGTTGCAAGCACCCCTGAC 61.109 55.000 0.00 0.00 0.00 3.51
369 370 0.396974 AAAGTTGCAAGCACCCCTGA 60.397 50.000 0.00 0.00 0.00 3.86
370 371 1.270550 CTAAAGTTGCAAGCACCCCTG 59.729 52.381 0.00 0.00 0.00 4.45
371 372 1.620822 CTAAAGTTGCAAGCACCCCT 58.379 50.000 0.00 0.00 0.00 4.79
372 373 0.038251 GCTAAAGTTGCAAGCACCCC 60.038 55.000 0.00 0.00 36.26 4.95
373 374 0.038251 GGCTAAAGTTGCAAGCACCC 60.038 55.000 0.00 0.00 38.01 4.61
374 375 0.961753 AGGCTAAAGTTGCAAGCACC 59.038 50.000 0.00 0.00 38.01 5.01
375 376 1.882623 AGAGGCTAAAGTTGCAAGCAC 59.117 47.619 0.00 0.00 38.01 4.40
376 377 2.276732 AGAGGCTAAAGTTGCAAGCA 57.723 45.000 0.00 0.00 38.01 3.91
377 378 4.766404 TTTAGAGGCTAAAGTTGCAAGC 57.234 40.909 0.00 0.00 35.47 4.01
378 379 6.428159 TCTCTTTTAGAGGCTAAAGTTGCAAG 59.572 38.462 0.00 0.00 42.54 4.01
379 380 6.204882 GTCTCTTTTAGAGGCTAAAGTTGCAA 59.795 38.462 0.00 0.00 43.38 4.08
380 381 5.701290 GTCTCTTTTAGAGGCTAAAGTTGCA 59.299 40.000 7.84 0.00 43.38 4.08
381 382 6.171932 GTCTCTTTTAGAGGCTAAAGTTGC 57.828 41.667 7.84 0.00 43.38 4.17
410 411 9.681062 CCAAGGGACTATTTTTAGTCTGATTAA 57.319 33.333 11.69 0.00 44.35 1.40
411 412 9.053472 TCCAAGGGACTATTTTTAGTCTGATTA 57.947 33.333 11.69 0.00 44.35 1.75
412 413 7.928873 TCCAAGGGACTATTTTTAGTCTGATT 58.071 34.615 11.69 3.80 44.35 2.57
413 414 7.510675 TCCAAGGGACTATTTTTAGTCTGAT 57.489 36.000 11.69 0.00 44.35 2.90
414 415 6.945636 TCCAAGGGACTATTTTTAGTCTGA 57.054 37.500 11.69 1.60 44.35 3.27
415 416 6.768381 GGATCCAAGGGACTATTTTTAGTCTG 59.232 42.308 6.95 4.29 44.35 3.51
416 417 6.447084 TGGATCCAAGGGACTATTTTTAGTCT 59.553 38.462 13.46 0.00 44.35 3.24
417 418 6.659824 TGGATCCAAGGGACTATTTTTAGTC 58.340 40.000 13.46 4.87 44.23 2.59
418 419 6.652205 TGGATCCAAGGGACTATTTTTAGT 57.348 37.500 13.46 0.00 38.49 2.24
419 420 7.573968 CTTGGATCCAAGGGACTATTTTTAG 57.426 40.000 37.26 14.87 46.88 1.85
433 434 0.918799 TAGGGCCTGCTTGGATCCAA 60.919 55.000 25.53 25.53 38.35 3.53
434 435 1.307778 TAGGGCCTGCTTGGATCCA 60.308 57.895 18.53 11.44 38.35 3.41
435 436 1.453669 CTAGGGCCTGCTTGGATCC 59.546 63.158 18.53 4.20 38.35 3.36
436 437 1.348775 ACCTAGGGCCTGCTTGGATC 61.349 60.000 18.53 0.00 38.35 3.36
437 438 1.308216 ACCTAGGGCCTGCTTGGAT 60.308 57.895 18.53 1.81 38.35 3.41
438 439 1.995626 GACCTAGGGCCTGCTTGGA 60.996 63.158 18.53 0.00 38.35 3.53
439 440 0.691078 TAGACCTAGGGCCTGCTTGG 60.691 60.000 18.53 15.00 39.35 3.61
440 441 1.134371 GTTAGACCTAGGGCCTGCTTG 60.134 57.143 18.53 4.00 0.00 4.01
441 442 1.205055 GTTAGACCTAGGGCCTGCTT 58.795 55.000 18.53 0.00 0.00 3.91
442 443 0.691413 GGTTAGACCTAGGGCCTGCT 60.691 60.000 18.53 10.59 34.73 4.24
443 444 1.830836 GGTTAGACCTAGGGCCTGC 59.169 63.158 18.53 0.53 34.73 4.85
486 487 4.248058 CAAGACTATGACACAGACATGCA 58.752 43.478 0.00 0.00 0.00 3.96
487 488 4.092529 CACAAGACTATGACACAGACATGC 59.907 45.833 0.00 0.00 0.00 4.06
499 500 6.455647 TGTACTTGAACTCCACAAGACTATG 58.544 40.000 13.34 0.00 44.92 2.23
503 504 4.694339 ACTGTACTTGAACTCCACAAGAC 58.306 43.478 13.34 8.29 44.92 3.01
508 509 5.045872 ACGTTAACTGTACTTGAACTCCAC 58.954 41.667 3.71 0.00 0.00 4.02
510 511 4.084693 GCACGTTAACTGTACTTGAACTCC 60.085 45.833 3.71 0.00 0.00 3.85
536 538 0.307760 GGACAAAGTTCACGTGGCAG 59.692 55.000 17.00 2.94 0.00 4.85
564 566 2.269172 GCTAGGGCTGTAAGTTCGTTC 58.731 52.381 0.00 0.00 35.30 3.95
605 607 2.682594 AGTATGCATCACTAGGCCTCA 58.317 47.619 9.68 0.00 0.00 3.86
701 703 1.987770 GTGCATGCAACGAATCTTTGG 59.012 47.619 24.58 0.00 0.00 3.28
756 758 0.955428 TGCATGCGGTCAAGAAGTCC 60.955 55.000 14.09 0.00 0.00 3.85
758 760 0.534877 TGTGCATGCGGTCAAGAAGT 60.535 50.000 14.09 0.00 0.00 3.01
863 865 2.435410 CCGCCGGTTCAGTTACCC 60.435 66.667 1.90 0.00 34.56 3.69
865 867 0.735287 GACTCCGCCGGTTCAGTTAC 60.735 60.000 1.63 0.00 0.00 2.50
866 868 1.588082 GACTCCGCCGGTTCAGTTA 59.412 57.895 1.63 0.00 0.00 2.24
900 902 5.088068 CGTGCTAAGTATTGTACGTGTGTA 58.912 41.667 0.00 0.00 0.00 2.90
912 917 6.238429 GCTACTAGACAGTTCGTGCTAAGTAT 60.238 42.308 0.00 0.00 36.14 2.12
1048 1056 2.279851 CAGCACGGTGGTCGACAA 60.280 61.111 18.91 2.10 42.43 3.18
1083 1091 3.011517 TCAAGCCCCAGCCTCCTC 61.012 66.667 0.00 0.00 41.25 3.71
1237 1245 0.673985 GGGTTGTTTCTTGCACCTCC 59.326 55.000 0.00 0.00 0.00 4.30
1257 1265 9.802039 AACTTAGGTATAGGAATACTCTCTCTG 57.198 37.037 0.00 0.00 38.44 3.35
1277 1285 5.245531 TGCATGGGAGAAGTACAAACTTAG 58.754 41.667 0.00 0.00 46.09 2.18
1291 1299 2.658285 ACACATGGTAATGCATGGGAG 58.342 47.619 0.00 0.00 37.29 4.30
1296 1304 5.293324 CGTAACACTACACATGGTAATGCAT 59.707 40.000 0.00 0.00 32.54 3.96
1329 1343 4.906618 ACCGATCAAAAGAGTAACATGGT 58.093 39.130 0.00 0.00 0.00 3.55
1330 1344 7.709182 TGTATACCGATCAAAAGAGTAACATGG 59.291 37.037 0.00 0.00 0.00 3.66
1379 1396 1.295423 GGAGGCGTGGAAGTTAGCA 59.705 57.895 0.00 0.00 0.00 3.49
1384 1401 2.426023 GTGTGGAGGCGTGGAAGT 59.574 61.111 0.00 0.00 0.00 3.01
1417 1434 0.316360 GGCGACGTTGCGAAAAAGAA 60.316 50.000 21.21 0.00 35.06 2.52
1580 1609 0.312729 AAATTTGTCGGACGGTTGGC 59.687 50.000 3.34 0.00 0.00 4.52
1765 1794 7.558161 TCTGGTCTATATCGACGACTTTTTA 57.442 36.000 0.00 0.00 34.75 1.52
1780 1809 0.533755 GCTGGCGCATTCTGGTCTAT 60.534 55.000 10.83 0.00 35.78 1.98
1791 1820 2.965147 GATCGTTGTTGCTGGCGCA 61.965 57.895 10.83 0.00 46.24 6.09
1792 1821 2.202349 GATCGTTGTTGCTGGCGC 60.202 61.111 0.00 0.00 0.00 6.53
1800 1829 4.081142 TGGTGATATGTCCAGATCGTTGTT 60.081 41.667 0.00 0.00 32.02 2.83
1813 1846 0.771127 CCCCCGGAATGGTGATATGT 59.229 55.000 0.73 0.00 35.15 2.29
1825 1858 2.232892 TTAGTGCTAGCTCCCCCGGA 62.233 60.000 17.23 0.00 0.00 5.14
1832 1865 2.695666 TGTCCATCCTTAGTGCTAGCTC 59.304 50.000 17.23 12.88 0.00 4.09
1898 1931 3.323979 AGGCTCTCCAAAAACTTACGAGA 59.676 43.478 0.00 0.00 33.74 4.04
1903 1936 5.013079 TCAGATGAGGCTCTCCAAAAACTTA 59.987 40.000 16.72 0.00 33.74 2.24
1904 1937 4.077822 CAGATGAGGCTCTCCAAAAACTT 58.922 43.478 16.72 0.00 33.74 2.66
1915 1948 1.113788 AGCTCAGTCAGATGAGGCTC 58.886 55.000 7.79 7.79 45.66 4.70
1916 1949 1.481772 GAAGCTCAGTCAGATGAGGCT 59.518 52.381 5.92 0.00 45.66 4.58
1917 1950 1.206610 TGAAGCTCAGTCAGATGAGGC 59.793 52.381 5.92 0.00 45.66 4.70
1918 1951 3.719924 GATGAAGCTCAGTCAGATGAGG 58.280 50.000 5.92 0.00 45.66 3.86
1920 1953 3.019564 TCGATGAAGCTCAGTCAGATGA 58.980 45.455 0.00 0.00 0.00 2.92
1930 1965 2.189342 CTTCTCCGTTCGATGAAGCTC 58.811 52.381 11.43 0.00 31.20 4.09
1939 1974 2.423892 TCTCTGATTCCTTCTCCGTTCG 59.576 50.000 0.00 0.00 0.00 3.95
1940 1975 4.457834 TTCTCTGATTCCTTCTCCGTTC 57.542 45.455 0.00 0.00 0.00 3.95
1954 1989 6.405065 GCTTCATGGCATGTTTTATTCTCTGA 60.405 38.462 25.62 0.78 0.00 3.27
1977 2013 3.549794 GCATCCTACAAAGAGAATGGCT 58.450 45.455 0.00 0.00 0.00 4.75
1983 2019 0.178068 GGCGGCATCCTACAAAGAGA 59.822 55.000 3.07 0.00 0.00 3.10
1988 2024 3.379865 GACCGGCGGCATCCTACAA 62.380 63.158 28.71 0.00 0.00 2.41
1998 2034 3.851845 TTGTCTTCGTGACCGGCGG 62.852 63.158 27.06 27.06 44.75 6.13
2043 2095 0.988832 TATGAGGGGGTGTGGTGTTC 59.011 55.000 0.00 0.00 0.00 3.18
2047 2099 1.284785 CATTGTATGAGGGGGTGTGGT 59.715 52.381 0.00 0.00 0.00 4.16
2054 2106 2.455557 TGTTTGCCATTGTATGAGGGG 58.544 47.619 0.00 0.00 0.00 4.79
2076 2128 0.461870 TGGCCTCGTTTCCATCGATG 60.462 55.000 18.76 18.76 36.73 3.84
2077 2129 0.179073 CTGGCCTCGTTTCCATCGAT 60.179 55.000 3.32 0.00 36.73 3.59
2084 2136 1.026718 CCATGTCCTGGCCTCGTTTC 61.027 60.000 3.32 0.00 38.47 2.78
2100 2152 4.603171 TGGCCTGAGGAATAATATCACCAT 59.397 41.667 0.65 0.00 0.00 3.55
2104 2156 5.221925 GGAGTTGGCCTGAGGAATAATATCA 60.222 44.000 0.65 0.00 0.00 2.15
2105 2157 5.221925 TGGAGTTGGCCTGAGGAATAATATC 60.222 44.000 0.65 0.00 0.00 1.63
2108 2160 2.852449 TGGAGTTGGCCTGAGGAATAAT 59.148 45.455 0.65 0.00 0.00 1.28
2120 2172 4.980805 TCGTGCGGTGGAGTTGGC 62.981 66.667 0.00 0.00 0.00 4.52
2121 2173 3.041940 GTCGTGCGGTGGAGTTGG 61.042 66.667 0.00 0.00 0.00 3.77
2122 2174 3.041940 GGTCGTGCGGTGGAGTTG 61.042 66.667 0.00 0.00 0.00 3.16
2123 2175 4.309950 GGGTCGTGCGGTGGAGTT 62.310 66.667 0.00 0.00 0.00 3.01
2124 2176 3.873679 TAGGGTCGTGCGGTGGAGT 62.874 63.158 0.00 0.00 0.00 3.85
2125 2177 2.351336 GATAGGGTCGTGCGGTGGAG 62.351 65.000 0.00 0.00 0.00 3.86
2126 2178 2.363276 ATAGGGTCGTGCGGTGGA 60.363 61.111 0.00 0.00 0.00 4.02
2127 2179 2.028125 ATGATAGGGTCGTGCGGTGG 62.028 60.000 0.00 0.00 0.00 4.61
2128 2180 0.875908 CATGATAGGGTCGTGCGGTG 60.876 60.000 0.00 0.00 37.06 4.94
2129 2181 1.327690 ACATGATAGGGTCGTGCGGT 61.328 55.000 0.00 0.00 45.87 5.68
2130 2182 0.597637 GACATGATAGGGTCGTGCGG 60.598 60.000 0.00 0.00 45.87 5.69
2131 2183 0.597637 GGACATGATAGGGTCGTGCG 60.598 60.000 0.00 0.00 45.87 5.34
2132 2184 0.597637 CGGACATGATAGGGTCGTGC 60.598 60.000 0.00 0.00 45.87 5.34
2134 2186 1.740285 GCGGACATGATAGGGTCGT 59.260 57.895 0.00 0.00 34.87 4.34
2135 2187 1.006102 GGCGGACATGATAGGGTCG 60.006 63.158 0.00 0.00 34.87 4.79
2136 2188 1.371558 GGGCGGACATGATAGGGTC 59.628 63.158 0.00 0.00 0.00 4.46
2137 2189 2.147387 GGGGCGGACATGATAGGGT 61.147 63.158 0.00 0.00 0.00 4.34
2138 2190 2.750350 GGGGCGGACATGATAGGG 59.250 66.667 0.00 0.00 0.00 3.53
2139 2191 2.750350 GGGGGCGGACATGATAGG 59.250 66.667 0.00 0.00 0.00 2.57
2140 2192 2.343758 CGGGGGCGGACATGATAG 59.656 66.667 0.00 0.00 0.00 2.08
2141 2193 2.445085 ACGGGGGCGGACATGATA 60.445 61.111 0.00 0.00 0.00 2.15
2142 2194 3.861797 GACGGGGGCGGACATGAT 61.862 66.667 0.00 0.00 0.00 2.45
2147 2199 4.419921 AAATGGACGGGGGCGGAC 62.420 66.667 0.00 0.00 0.00 4.79
2148 2200 4.418328 CAAATGGACGGGGGCGGA 62.418 66.667 0.00 0.00 0.00 5.54
2154 2206 1.822371 CTTTTACCCCAAATGGACGGG 59.178 52.381 0.00 0.00 43.05 5.28
2155 2207 1.822371 CCTTTTACCCCAAATGGACGG 59.178 52.381 0.00 0.00 41.76 4.79
2156 2208 1.822371 CCCTTTTACCCCAAATGGACG 59.178 52.381 0.00 0.00 41.76 4.79
2157 2209 2.829720 GTCCCTTTTACCCCAAATGGAC 59.170 50.000 0.00 5.28 41.76 4.02
2158 2210 2.451273 TGTCCCTTTTACCCCAAATGGA 59.549 45.455 0.00 0.00 41.76 3.41
2159 2211 2.831526 CTGTCCCTTTTACCCCAAATGG 59.168 50.000 0.00 0.00 39.87 3.16
2160 2212 3.509967 GTCTGTCCCTTTTACCCCAAATG 59.490 47.826 0.00 0.00 0.00 2.32
2161 2213 3.774734 GTCTGTCCCTTTTACCCCAAAT 58.225 45.455 0.00 0.00 0.00 2.32
2162 2214 2.487625 CGTCTGTCCCTTTTACCCCAAA 60.488 50.000 0.00 0.00 0.00 3.28
2163 2215 1.072648 CGTCTGTCCCTTTTACCCCAA 59.927 52.381 0.00 0.00 0.00 4.12
2164 2216 0.688487 CGTCTGTCCCTTTTACCCCA 59.312 55.000 0.00 0.00 0.00 4.96
2165 2217 0.978907 TCGTCTGTCCCTTTTACCCC 59.021 55.000 0.00 0.00 0.00 4.95
2166 2218 1.897802 TCTCGTCTGTCCCTTTTACCC 59.102 52.381 0.00 0.00 0.00 3.69
2167 2219 2.670509 CGTCTCGTCTGTCCCTTTTACC 60.671 54.545 0.00 0.00 0.00 2.85
2168 2220 2.593257 CGTCTCGTCTGTCCCTTTTAC 58.407 52.381 0.00 0.00 0.00 2.01
2169 2221 1.542915 CCGTCTCGTCTGTCCCTTTTA 59.457 52.381 0.00 0.00 0.00 1.52
2170 2222 0.317479 CCGTCTCGTCTGTCCCTTTT 59.683 55.000 0.00 0.00 0.00 2.27
2171 2223 1.965219 CCGTCTCGTCTGTCCCTTT 59.035 57.895 0.00 0.00 0.00 3.11
2172 2224 2.637383 GCCGTCTCGTCTGTCCCTT 61.637 63.158 0.00 0.00 0.00 3.95
2173 2225 3.063084 GCCGTCTCGTCTGTCCCT 61.063 66.667 0.00 0.00 0.00 4.20
2174 2226 4.131088 GGCCGTCTCGTCTGTCCC 62.131 72.222 0.00 0.00 0.00 4.46
2175 2227 4.131088 GGGCCGTCTCGTCTGTCC 62.131 72.222 0.00 0.00 0.00 4.02
2176 2228 3.343788 CTGGGCCGTCTCGTCTGTC 62.344 68.421 0.00 0.00 0.00 3.51
2177 2229 3.374402 CTGGGCCGTCTCGTCTGT 61.374 66.667 0.00 0.00 0.00 3.41
2178 2230 4.803426 GCTGGGCCGTCTCGTCTG 62.803 72.222 0.00 0.00 0.00 3.51
2199 2251 2.235536 CTAAAGTCCGTTTGCGCCCG 62.236 60.000 4.18 4.36 36.67 6.13
2200 2252 1.232621 ACTAAAGTCCGTTTGCGCCC 61.233 55.000 4.18 0.00 36.67 6.13
2201 2253 0.165295 GACTAAAGTCCGTTTGCGCC 59.835 55.000 4.18 0.00 39.07 6.53
2202 2254 3.652018 GACTAAAGTCCGTTTGCGC 57.348 52.632 0.00 0.00 39.07 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.