Multiple sequence alignment - TraesCS2B01G368100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G368100 chr2B 100.000 3386 0 0 1 3386 525247891 525251276 0.000000e+00 6253.0
1 TraesCS2B01G368100 chr2A 96.194 2102 64 13 623 2717 589656018 589658110 0.000000e+00 3424.0
2 TraesCS2B01G368100 chr2A 82.537 544 53 11 68 597 589655395 589655910 1.120000e-119 440.0
3 TraesCS2B01G368100 chr2A 94.309 123 6 1 2710 2832 589661293 589661414 1.600000e-43 187.0
4 TraesCS2B01G368100 chr2D 94.877 1386 54 8 1632 3014 446235476 446236847 0.000000e+00 2150.0
5 TraesCS2B01G368100 chr2D 89.815 1620 90 32 68 1647 446233155 446234739 0.000000e+00 2008.0
6 TraesCS2B01G368100 chrUn 91.185 329 26 3 3059 3386 250541365 250541691 8.620000e-121 444.0
7 TraesCS2B01G368100 chr6B 90.769 325 28 2 3062 3386 513799650 513799328 1.870000e-117 433.0
8 TraesCS2B01G368100 chr4B 90.798 326 26 4 3062 3386 26828811 26828489 1.870000e-117 433.0
9 TraesCS2B01G368100 chr4B 93.013 229 14 2 3159 3386 602336244 602336017 1.950000e-87 333.0
10 TraesCS2B01G368100 chr7B 87.768 327 31 3 3062 3386 742653174 742652855 1.150000e-99 374.0
11 TraesCS2B01G368100 chr1B 89.153 295 29 3 3092 3386 144875805 144875514 6.900000e-97 364.0
12 TraesCS2B01G368100 chr1B 93.578 109 5 2 1000 1107 90697547 90697654 9.720000e-36 161.0
13 TraesCS2B01G368100 chr1B 93.578 109 5 2 1000 1107 90877460 90877567 9.720000e-36 161.0
14 TraesCS2B01G368100 chr4D 95.455 44 0 2 3017 3060 495622619 495622660 6.060000e-08 69.4
15 TraesCS2B01G368100 chr5A 94.444 36 2 0 3021 3056 461293674 461293639 4.720000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G368100 chr2B 525247891 525251276 3385 False 6253.000000 6253 100.000000 1 3386 1 chr2B.!!$F1 3385
1 TraesCS2B01G368100 chr2A 589655395 589661414 6019 False 1350.333333 3424 91.013333 68 2832 3 chr2A.!!$F1 2764
2 TraesCS2B01G368100 chr2D 446233155 446236847 3692 False 2079.000000 2150 92.346000 68 3014 2 chr2D.!!$F1 2946

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.109342 AGCCAGTGAAGACCTTGTGG 59.891 55.0 0.00 0.00 39.83 4.17 F
63 64 0.248498 CATGCTCTTCATGCGCCTTG 60.248 55.0 4.18 2.41 45.20 3.61 F
461 468 0.250124 TGGAGACAACGTCGGCAAAT 60.250 50.0 0.00 0.00 37.67 2.32 F
773 876 0.329039 TCTCTCTCCCCCTAGGCTCT 60.329 60.0 2.05 0.00 34.51 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1519 1636 0.310854 GTCAAGCACCCCAAAAGACG 59.689 55.00 0.00 0.0 0.00 4.18 R
1652 2521 4.462133 TGAACAATTCCGAGGTGGTTTAA 58.538 39.13 0.00 0.0 39.52 1.52 R
2325 3196 1.035923 TGCCAAATCCAAACGCAGAA 58.964 45.00 0.00 0.0 0.00 3.02 R
2613 3487 0.529992 GCTCCGGGGTCGATAACTTG 60.530 60.00 1.62 0.0 39.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.840199 TGTGAGCCAGTGAAGACCT 58.160 52.632 0.00 0.00 0.00 3.85
19 20 1.131638 TGTGAGCCAGTGAAGACCTT 58.868 50.000 0.00 0.00 0.00 3.50
20 21 1.202687 TGTGAGCCAGTGAAGACCTTG 60.203 52.381 0.00 0.00 0.00 3.61
21 22 1.131638 TGAGCCAGTGAAGACCTTGT 58.868 50.000 0.00 0.00 0.00 3.16
22 23 1.202687 TGAGCCAGTGAAGACCTTGTG 60.203 52.381 0.00 0.00 0.00 3.33
23 24 0.109342 AGCCAGTGAAGACCTTGTGG 59.891 55.000 0.00 0.00 39.83 4.17
24 25 1.518903 GCCAGTGAAGACCTTGTGGC 61.519 60.000 10.02 10.02 43.43 5.01
25 26 0.109342 CCAGTGAAGACCTTGTGGCT 59.891 55.000 0.00 0.00 36.63 4.75
26 27 1.517242 CAGTGAAGACCTTGTGGCTC 58.483 55.000 0.00 0.00 36.63 4.70
27 28 1.131638 AGTGAAGACCTTGTGGCTCA 58.868 50.000 0.00 0.00 36.63 4.26
28 29 1.701847 AGTGAAGACCTTGTGGCTCAT 59.298 47.619 0.00 0.00 36.63 2.90
29 30 2.107204 AGTGAAGACCTTGTGGCTCATT 59.893 45.455 0.00 0.00 36.63 2.57
30 31 2.227388 GTGAAGACCTTGTGGCTCATTG 59.773 50.000 0.00 0.00 36.63 2.82
31 32 2.158623 TGAAGACCTTGTGGCTCATTGT 60.159 45.455 0.00 0.00 36.63 2.71
32 33 2.191128 AGACCTTGTGGCTCATTGTC 57.809 50.000 9.60 9.60 36.63 3.18
33 34 1.701847 AGACCTTGTGGCTCATTGTCT 59.298 47.619 12.80 12.80 34.59 3.41
34 35 2.079925 GACCTTGTGGCTCATTGTCTC 58.920 52.381 10.10 0.00 36.63 3.36
35 36 1.081892 CCTTGTGGCTCATTGTCTCG 58.918 55.000 0.00 0.00 0.00 4.04
36 37 1.609061 CCTTGTGGCTCATTGTCTCGT 60.609 52.381 0.00 0.00 0.00 4.18
37 38 2.353704 CCTTGTGGCTCATTGTCTCGTA 60.354 50.000 0.00 0.00 0.00 3.43
38 39 3.525537 CTTGTGGCTCATTGTCTCGTAT 58.474 45.455 0.00 0.00 0.00 3.06
39 40 3.165058 TGTGGCTCATTGTCTCGTATC 57.835 47.619 0.00 0.00 0.00 2.24
40 41 2.495669 TGTGGCTCATTGTCTCGTATCA 59.504 45.455 0.00 0.00 0.00 2.15
41 42 3.132824 TGTGGCTCATTGTCTCGTATCAT 59.867 43.478 0.00 0.00 0.00 2.45
42 43 3.738282 GTGGCTCATTGTCTCGTATCATC 59.262 47.826 0.00 0.00 0.00 2.92
43 44 3.243873 TGGCTCATTGTCTCGTATCATCC 60.244 47.826 0.00 0.00 0.00 3.51
44 45 3.321497 GCTCATTGTCTCGTATCATCCC 58.679 50.000 0.00 0.00 0.00 3.85
45 46 3.243873 GCTCATTGTCTCGTATCATCCCA 60.244 47.826 0.00 0.00 0.00 4.37
46 47 4.562347 GCTCATTGTCTCGTATCATCCCAT 60.562 45.833 0.00 0.00 0.00 4.00
47 48 4.886579 TCATTGTCTCGTATCATCCCATG 58.113 43.478 0.00 0.00 0.00 3.66
48 49 2.820059 TGTCTCGTATCATCCCATGC 57.180 50.000 0.00 0.00 0.00 4.06
49 50 2.319844 TGTCTCGTATCATCCCATGCT 58.680 47.619 0.00 0.00 0.00 3.79
50 51 2.297315 TGTCTCGTATCATCCCATGCTC 59.703 50.000 0.00 0.00 0.00 4.26
51 52 2.560542 GTCTCGTATCATCCCATGCTCT 59.439 50.000 0.00 0.00 0.00 4.09
52 53 3.006323 GTCTCGTATCATCCCATGCTCTT 59.994 47.826 0.00 0.00 0.00 2.85
53 54 3.256879 TCTCGTATCATCCCATGCTCTTC 59.743 47.826 0.00 0.00 0.00 2.87
54 55 2.965147 TCGTATCATCCCATGCTCTTCA 59.035 45.455 0.00 0.00 0.00 3.02
55 56 3.580022 TCGTATCATCCCATGCTCTTCAT 59.420 43.478 0.00 0.00 35.31 2.57
61 62 3.823402 CATGCTCTTCATGCGCCT 58.177 55.556 4.18 0.00 45.20 5.52
62 63 2.104267 CATGCTCTTCATGCGCCTT 58.896 52.632 4.18 0.00 45.20 4.35
63 64 0.248498 CATGCTCTTCATGCGCCTTG 60.248 55.000 4.18 2.41 45.20 3.61
64 65 2.001361 ATGCTCTTCATGCGCCTTGC 62.001 55.000 4.18 0.00 46.70 4.01
65 66 2.404995 GCTCTTCATGCGCCTTGCT 61.405 57.895 4.18 0.00 46.63 3.91
66 67 1.091771 GCTCTTCATGCGCCTTGCTA 61.092 55.000 4.18 0.00 46.63 3.49
116 117 8.833493 TGTGATCATGTTGCATCTAGAATAAAG 58.167 33.333 0.00 0.00 0.00 1.85
120 121 7.508687 TCATGTTGCATCTAGAATAAAGCCTA 58.491 34.615 0.00 0.00 0.00 3.93
127 128 7.181665 TGCATCTAGAATAAAGCCTATGATCCT 59.818 37.037 0.00 0.00 0.00 3.24
129 130 7.397892 TCTAGAATAAAGCCTATGATCCTCG 57.602 40.000 0.00 0.00 0.00 4.63
132 133 2.802787 AAAGCCTATGATCCTCGTCG 57.197 50.000 0.00 0.00 0.00 5.12
202 206 1.206132 CCACTACACCGACCATGCTTA 59.794 52.381 0.00 0.00 0.00 3.09
224 228 2.178106 ACCACCAAACCTACCAAATCCA 59.822 45.455 0.00 0.00 0.00 3.41
225 229 3.181412 ACCACCAAACCTACCAAATCCAT 60.181 43.478 0.00 0.00 0.00 3.41
226 230 3.447229 CCACCAAACCTACCAAATCCATC 59.553 47.826 0.00 0.00 0.00 3.51
227 231 3.128589 CACCAAACCTACCAAATCCATCG 59.871 47.826 0.00 0.00 0.00 3.84
228 232 2.099098 CCAAACCTACCAAATCCATCGC 59.901 50.000 0.00 0.00 0.00 4.58
229 233 3.016736 CAAACCTACCAAATCCATCGCT 58.983 45.455 0.00 0.00 0.00 4.93
230 234 2.332063 ACCTACCAAATCCATCGCTG 57.668 50.000 0.00 0.00 0.00 5.18
231 235 1.134098 ACCTACCAAATCCATCGCTGG 60.134 52.381 0.00 0.00 44.64 4.85
232 236 0.947244 CTACCAAATCCATCGCTGGC 59.053 55.000 0.00 0.00 42.80 4.85
233 237 0.813610 TACCAAATCCATCGCTGGCG 60.814 55.000 8.80 8.80 42.80 5.69
242 246 2.048222 TCGCTGGCGACAAAGAGG 60.048 61.111 13.78 0.00 44.01 3.69
243 247 2.048222 CGCTGGCGACAAAGAGGA 60.048 61.111 9.51 0.00 42.06 3.71
244 248 2.097038 CGCTGGCGACAAAGAGGAG 61.097 63.158 9.51 0.00 42.06 3.69
245 249 1.004440 GCTGGCGACAAAGAGGAGT 60.004 57.895 0.00 0.00 42.06 3.85
246 250 1.294659 GCTGGCGACAAAGAGGAGTG 61.295 60.000 0.00 0.00 42.06 3.51
247 251 1.294659 CTGGCGACAAAGAGGAGTGC 61.295 60.000 0.00 0.00 42.06 4.40
248 252 2.035442 GGCGACAAAGAGGAGTGCC 61.035 63.158 0.00 0.00 0.00 5.01
252 256 0.807496 GACAAAGAGGAGTGCCATGC 59.193 55.000 0.00 0.00 36.29 4.06
282 286 6.272822 AGGATTTGGAAGCACTTTATTCAC 57.727 37.500 0.00 0.00 0.00 3.18
311 315 2.627515 TGCTATCATGGGAGCAGAAC 57.372 50.000 15.80 0.00 43.64 3.01
350 354 5.530243 ACCCTAAGCAAACTAGTCCTAGAT 58.470 41.667 8.29 0.00 36.97 1.98
367 371 8.958506 AGTCCTAGATTAATACTATACAAGCCG 58.041 37.037 0.00 0.00 0.00 5.52
368 372 8.189460 GTCCTAGATTAATACTATACAAGCCGG 58.811 40.741 0.00 0.00 0.00 6.13
374 378 1.128200 ACTATACAAGCCGGGCATGA 58.872 50.000 29.02 13.85 31.38 3.07
377 381 2.343475 ATACAAGCCGGGCATGAGGG 62.343 60.000 29.02 10.15 31.38 4.30
413 417 0.324552 TTCACCCATCCTGCCAATGG 60.325 55.000 0.00 0.00 42.84 3.16
418 425 0.256752 CCATCCTGCCAATGGTCAGA 59.743 55.000 20.13 7.35 39.11 3.27
419 426 1.676746 CATCCTGCCAATGGTCAGAG 58.323 55.000 20.13 12.59 31.74 3.35
420 427 0.549950 ATCCTGCCAATGGTCAGAGG 59.450 55.000 20.13 12.05 31.74 3.69
427 434 2.422519 GCCAATGGTCAGAGGTCATCAT 60.423 50.000 0.00 0.00 0.00 2.45
439 446 3.329497 TCATCATGGGAGGACAGCT 57.671 52.632 0.00 0.00 0.00 4.24
452 459 1.287730 GACAGCTGCTGGAGACAACG 61.288 60.000 31.00 5.48 42.06 4.10
461 468 0.250124 TGGAGACAACGTCGGCAAAT 60.250 50.000 0.00 0.00 37.67 2.32
464 471 2.159747 GGAGACAACGTCGGCAAATAAC 60.160 50.000 0.00 0.00 37.67 1.89
473 480 2.264813 TCGGCAAATAACGACTAGTGC 58.735 47.619 0.00 0.00 33.69 4.40
474 481 2.094390 TCGGCAAATAACGACTAGTGCT 60.094 45.455 0.00 0.00 33.69 4.40
476 483 3.486108 CGGCAAATAACGACTAGTGCTAG 59.514 47.826 0.00 4.80 39.04 3.42
478 485 5.585390 GGCAAATAACGACTAGTGCTAGTA 58.415 41.667 11.40 0.00 45.63 1.82
479 486 5.458126 GGCAAATAACGACTAGTGCTAGTAC 59.542 44.000 11.40 2.24 45.63 2.73
480 487 6.264088 GCAAATAACGACTAGTGCTAGTACT 58.736 40.000 17.94 17.94 45.63 2.73
481 488 6.750963 GCAAATAACGACTAGTGCTAGTACTT 59.249 38.462 19.04 1.48 45.63 2.24
482 489 7.275123 GCAAATAACGACTAGTGCTAGTACTTT 59.725 37.037 19.04 9.16 45.63 2.66
532 545 3.740115 AGTCAAGCGGTTTCAACATACT 58.260 40.909 0.00 0.00 0.00 2.12
533 546 3.746492 AGTCAAGCGGTTTCAACATACTC 59.254 43.478 0.00 0.00 0.00 2.59
534 547 3.071479 TCAAGCGGTTTCAACATACTCC 58.929 45.455 0.00 0.00 0.00 3.85
551 570 4.530710 ACTCCTTATGTTGTGCTAACGA 57.469 40.909 0.00 0.00 0.00 3.85
557 576 6.653320 TCCTTATGTTGTGCTAACGAAAGATT 59.347 34.615 14.31 0.00 0.00 2.40
558 577 6.742718 CCTTATGTTGTGCTAACGAAAGATTG 59.257 38.462 14.31 2.52 0.00 2.67
559 578 5.940192 ATGTTGTGCTAACGAAAGATTGA 57.060 34.783 0.00 0.00 0.00 2.57
560 579 5.090652 TGTTGTGCTAACGAAAGATTGAC 57.909 39.130 0.00 0.00 0.00 3.18
561 580 4.572795 TGTTGTGCTAACGAAAGATTGACA 59.427 37.500 0.00 0.00 0.00 3.58
562 581 5.238432 TGTTGTGCTAACGAAAGATTGACAT 59.762 36.000 0.00 0.00 0.00 3.06
586 645 4.065088 CTCCTTGTCAAATTCGAGACCAA 58.935 43.478 0.63 0.00 33.89 3.67
600 659 4.609691 GAGACCAAACTCGAACACAAAA 57.390 40.909 0.00 0.00 0.00 2.44
616 675 5.481105 ACACAAAATTTGTATGGCAGATGG 58.519 37.500 11.33 0.00 43.23 3.51
617 676 4.871557 CACAAAATTTGTATGGCAGATGGG 59.128 41.667 11.33 0.00 43.23 4.00
618 677 3.825143 AAATTTGTATGGCAGATGGGC 57.175 42.857 0.00 0.00 43.73 5.36
638 738 4.381079 GGGCAGCGGTCAAATTTACATTTA 60.381 41.667 0.00 0.00 30.90 1.40
639 739 5.348164 GGCAGCGGTCAAATTTACATTTAT 58.652 37.500 0.00 0.00 30.90 1.40
640 740 6.460399 GGGCAGCGGTCAAATTTACATTTATA 60.460 38.462 0.00 0.00 30.90 0.98
641 741 6.636850 GGCAGCGGTCAAATTTACATTTATAG 59.363 38.462 0.00 0.00 30.90 1.31
642 742 6.142320 GCAGCGGTCAAATTTACATTTATAGC 59.858 38.462 0.00 0.00 30.90 2.97
643 743 7.192913 CAGCGGTCAAATTTACATTTATAGCA 58.807 34.615 0.00 0.00 30.90 3.49
644 744 7.862372 CAGCGGTCAAATTTACATTTATAGCAT 59.138 33.333 0.00 0.00 30.90 3.79
645 745 9.062524 AGCGGTCAAATTTACATTTATAGCATA 57.937 29.630 0.00 0.00 30.90 3.14
720 823 4.647424 AAAAGCACAAAATCGTTCCTCA 57.353 36.364 0.00 0.00 0.00 3.86
744 847 2.840651 CTCCATCTACTCCACCAAACCT 59.159 50.000 0.00 0.00 0.00 3.50
746 849 2.571653 CCATCTACTCCACCAAACCTCA 59.428 50.000 0.00 0.00 0.00 3.86
760 863 2.885388 ACCTCAATCCCCATCTCTCT 57.115 50.000 0.00 0.00 0.00 3.10
761 864 2.688477 ACCTCAATCCCCATCTCTCTC 58.312 52.381 0.00 0.00 0.00 3.20
773 876 0.329039 TCTCTCTCCCCCTAGGCTCT 60.329 60.000 2.05 0.00 34.51 4.09
856 959 1.074471 GCATCTCTACCCCTCCCCA 60.074 63.158 0.00 0.00 0.00 4.96
1182 1285 8.446489 TTGCAACAACGAGAATATTGTAATTG 57.554 30.769 0.00 0.00 38.08 2.32
1192 1295 6.186957 AGAATATTGTAATTGCCCACTGTGA 58.813 36.000 9.86 0.00 0.00 3.58
1258 1361 0.609406 GTCCTGTCCCTTTCTTGGGC 60.609 60.000 0.00 0.00 46.67 5.36
1365 1480 6.209589 GTGGGAGCTCTTAAAGAAAAAGGATT 59.790 38.462 14.64 0.00 0.00 3.01
1413 1529 9.104965 TCGTATATAAAGTGAATTTCAGGTTGG 57.895 33.333 0.00 0.00 32.01 3.77
1448 1565 8.017418 TGTTCAATGATTAACCAACCTCTTTT 57.983 30.769 0.00 0.00 0.00 2.27
1589 1706 9.251792 GCAATTTGTTGCATCATGATATCTTTA 57.748 29.630 8.15 0.00 46.60 1.85
1723 2592 9.677567 GACACATTAACACATTCATTTAAGTGT 57.322 29.630 0.00 0.00 46.24 3.55
1781 2650 3.650942 TGGATTAGGCCTCCGTAATTGAT 59.349 43.478 9.68 0.00 33.49 2.57
1851 2721 7.533289 TCGGGTCAGTATCATGTATAAATCA 57.467 36.000 0.00 0.00 0.00 2.57
1960 2830 6.072508 GGTCAAATACTCAGCAATTTGTCTCA 60.073 38.462 11.13 0.00 41.62 3.27
1976 2846 4.129380 TGTCTCACAGTTCACAATTCCTG 58.871 43.478 0.00 0.00 0.00 3.86
2091 2961 1.449778 GCCCCGGAACTACTTGCTC 60.450 63.158 0.73 0.00 0.00 4.26
2268 3139 5.930837 ATTTTGCTTTTATCCCCAATCGA 57.069 34.783 0.00 0.00 0.00 3.59
2312 3183 1.299541 AGCAATGTAGCATGGTACGC 58.700 50.000 25.46 22.27 36.85 4.42
2318 3189 1.129326 GTAGCATGGTACGCGATGAC 58.871 55.000 18.52 7.64 33.40 3.06
2325 3196 1.274596 GGTACGCGATGACAACGATT 58.725 50.000 15.93 0.00 0.00 3.34
2421 3292 0.108567 GAAGTCGGAGGAGCCTTGAC 60.109 60.000 12.36 12.36 34.25 3.18
2538 3412 2.946990 TGATACTCATGCCTGCAATGTG 59.053 45.455 0.00 0.00 0.00 3.21
2573 3447 4.503910 TCTTGTTCCTGAATCATGGTACG 58.496 43.478 0.00 0.00 0.00 3.67
2581 3455 5.304357 TCCTGAATCATGGTACGTGACATAT 59.696 40.000 0.00 0.00 0.00 1.78
2613 3487 0.751643 AATGCACATAGCCGGGGTTC 60.752 55.000 3.09 0.00 44.83 3.62
2676 3550 5.532032 TGATTTCGACCACGTCCATAGTATA 59.468 40.000 0.00 0.00 40.69 1.47
2740 6804 3.052036 CGTTCTTTGCAGTTTTGGATGG 58.948 45.455 0.00 0.00 0.00 3.51
2814 6878 0.745468 AGCGGATCTACCTTTCGTCC 59.255 55.000 0.00 0.00 36.31 4.79
2832 6896 3.438087 CGTCCTTGCTTTGAGATTCATGT 59.562 43.478 0.00 0.00 0.00 3.21
2833 6897 4.083110 CGTCCTTGCTTTGAGATTCATGTT 60.083 41.667 0.00 0.00 0.00 2.71
2834 6898 5.563475 CGTCCTTGCTTTGAGATTCATGTTT 60.563 40.000 0.00 0.00 0.00 2.83
2835 6899 6.218746 GTCCTTGCTTTGAGATTCATGTTTT 58.781 36.000 0.00 0.00 0.00 2.43
2836 6900 6.703165 GTCCTTGCTTTGAGATTCATGTTTTT 59.297 34.615 0.00 0.00 0.00 1.94
2854 6918 2.312424 TTTTGGGGGTTTCGGCTAAT 57.688 45.000 0.00 0.00 0.00 1.73
2875 6939 8.653338 GCTAATATTTGTCTTGTTTCAGACGTA 58.347 33.333 0.00 0.00 45.53 3.57
2897 6961 6.237175 CGTATTGCATAATGTTTCGTTGGTTG 60.237 38.462 0.00 0.00 0.00 3.77
2939 7003 4.265073 ACCATCATAAGAGCAACTCCAAC 58.735 43.478 0.00 0.00 0.00 3.77
2940 7004 4.263462 ACCATCATAAGAGCAACTCCAACA 60.263 41.667 0.00 0.00 0.00 3.33
2961 7025 1.376609 GGCGATCCATTTTGTCCGCT 61.377 55.000 0.00 0.00 41.96 5.52
2962 7026 0.451783 GCGATCCATTTTGTCCGCTT 59.548 50.000 0.00 0.00 39.57 4.68
2964 7028 1.795162 CGATCCATTTTGTCCGCTTGC 60.795 52.381 0.00 0.00 0.00 4.01
2968 7032 1.132262 CCATTTTGTCCGCTTGCGTAT 59.868 47.619 13.97 0.00 0.00 3.06
2969 7033 2.415357 CCATTTTGTCCGCTTGCGTATT 60.415 45.455 13.97 0.00 0.00 1.89
2981 7045 0.889638 TGCGTATTTTTGGGTCGCCA 60.890 50.000 0.00 0.00 45.06 5.69
2982 7046 0.454196 GCGTATTTTTGGGTCGCCAT 59.546 50.000 0.00 0.00 40.83 4.40
2987 7051 1.519751 TTTTTGGGTCGCCATGGACG 61.520 55.000 18.40 18.60 37.82 4.79
3007 7071 2.524951 AAAATGCTGGCCCAATGCGG 62.525 55.000 0.00 0.00 42.61 5.69
3023 7087 2.595172 GGCGACCCGGGACAAAAA 60.595 61.111 32.02 0.00 0.00 1.94
3024 7088 1.974875 GGCGACCCGGGACAAAAAT 60.975 57.895 32.02 0.82 0.00 1.82
3025 7089 1.211709 GCGACCCGGGACAAAAATG 59.788 57.895 32.02 8.33 0.00 2.32
3026 7090 1.211709 CGACCCGGGACAAAAATGC 59.788 57.895 32.02 3.34 0.00 3.56
3027 7091 1.241315 CGACCCGGGACAAAAATGCT 61.241 55.000 32.02 0.00 0.00 3.79
3028 7092 0.243636 GACCCGGGACAAAAATGCTG 59.756 55.000 32.02 0.00 0.00 4.41
3029 7093 1.184970 ACCCGGGACAAAAATGCTGG 61.185 55.000 32.02 0.00 36.24 4.85
3030 7094 1.079888 CCGGGACAAAAATGCTGGC 60.080 57.895 0.00 0.00 28.61 4.85
3031 7095 1.079888 CGGGACAAAAATGCTGGCC 60.080 57.895 0.00 0.00 41.79 5.36
3033 7097 2.056985 GGACAAAAATGCTGGCCCA 58.943 52.632 0.00 0.00 35.74 5.36
3034 7098 0.396060 GGACAAAAATGCTGGCCCAA 59.604 50.000 0.00 0.00 35.74 4.12
3035 7099 1.511850 GACAAAAATGCTGGCCCAAC 58.488 50.000 0.00 0.00 0.00 3.77
3036 7100 0.249826 ACAAAAATGCTGGCCCAACG 60.250 50.000 0.00 0.00 0.00 4.10
3037 7101 1.301637 AAAAATGCTGGCCCAACGC 60.302 52.632 0.00 0.00 0.00 4.84
3038 7102 3.572196 AAAATGCTGGCCCAACGCG 62.572 57.895 3.53 3.53 38.94 6.01
3049 7113 3.732892 CAACGCGCCGACCCATTT 61.733 61.111 5.73 0.00 0.00 2.32
3050 7114 3.732892 AACGCGCCGACCCATTTG 61.733 61.111 5.73 0.00 0.00 2.32
3053 7117 4.049640 GCGCCGACCCATTTGCAA 62.050 61.111 0.00 0.00 0.00 4.08
3054 7118 2.647875 CGCCGACCCATTTGCAAA 59.352 55.556 15.44 15.44 0.00 3.68
3055 7119 1.006805 CGCCGACCCATTTGCAAAA 60.007 52.632 17.19 0.00 0.00 2.44
3056 7120 1.281566 CGCCGACCCATTTGCAAAAC 61.282 55.000 17.19 5.00 0.00 2.43
3057 7121 0.249657 GCCGACCCATTTGCAAAACA 60.250 50.000 17.19 0.00 0.00 2.83
3058 7122 1.496934 CCGACCCATTTGCAAAACAC 58.503 50.000 17.19 5.68 0.00 3.32
3059 7123 1.127701 CGACCCATTTGCAAAACACG 58.872 50.000 17.19 13.26 0.00 4.49
3060 7124 1.535015 CGACCCATTTGCAAAACACGT 60.535 47.619 17.19 9.86 0.00 4.49
3061 7125 2.124122 GACCCATTTGCAAAACACGTC 58.876 47.619 17.19 14.57 0.00 4.34
3062 7126 1.754226 ACCCATTTGCAAAACACGTCT 59.246 42.857 17.19 0.00 0.00 4.18
3063 7127 2.126467 CCCATTTGCAAAACACGTCTG 58.874 47.619 17.19 7.81 0.00 3.51
3064 7128 1.522258 CCATTTGCAAAACACGTCTGC 59.478 47.619 17.19 0.00 36.60 4.26
3065 7129 2.191802 CATTTGCAAAACACGTCTGCA 58.808 42.857 17.19 6.96 44.04 4.41
3066 7130 1.906757 TTTGCAAAACACGTCTGCAG 58.093 45.000 10.02 7.63 46.08 4.41
3067 7131 0.525242 TTGCAAAACACGTCTGCAGC 60.525 50.000 9.47 3.23 46.08 5.25
3068 7132 2.005537 GCAAAACACGTCTGCAGCG 61.006 57.895 22.98 22.98 36.09 5.18
3069 7133 2.005537 CAAAACACGTCTGCAGCGC 61.006 57.895 24.03 0.00 0.00 5.92
3070 7134 3.181169 AAAACACGTCTGCAGCGCC 62.181 57.895 24.03 8.68 0.00 6.53
3102 7166 3.660111 GCCCAACTCGCGCTTGTT 61.660 61.111 5.56 7.49 0.00 2.83
3103 7167 2.252260 CCCAACTCGCGCTTGTTG 59.748 61.111 25.32 25.32 42.05 3.33
3104 7168 2.250939 CCCAACTCGCGCTTGTTGA 61.251 57.895 30.37 11.77 44.29 3.18
3105 7169 1.646540 CCAACTCGCGCTTGTTGAA 59.353 52.632 30.37 1.06 44.29 2.69
3106 7170 0.384725 CCAACTCGCGCTTGTTGAAG 60.385 55.000 30.37 17.93 44.29 3.02
3107 7171 0.304705 CAACTCGCGCTTGTTGAAGT 59.695 50.000 27.04 9.68 44.29 3.01
3108 7172 0.304705 AACTCGCGCTTGTTGAAGTG 59.695 50.000 5.56 0.00 41.84 3.16
3109 7173 0.529773 ACTCGCGCTTGTTGAAGTGA 60.530 50.000 5.56 0.00 41.51 3.41
3110 7174 0.581529 CTCGCGCTTGTTGAAGTGAA 59.418 50.000 5.56 0.00 41.51 3.18
3111 7175 1.003972 CTCGCGCTTGTTGAAGTGAAA 60.004 47.619 5.56 0.00 41.51 2.69
3112 7176 1.398739 TCGCGCTTGTTGAAGTGAAAA 59.601 42.857 5.56 0.00 41.51 2.29
3113 7177 2.159503 TCGCGCTTGTTGAAGTGAAAAA 60.160 40.909 5.56 0.00 41.51 1.94
3138 7202 8.876275 AATTACAAAAATCAATGGATCGATGG 57.124 30.769 0.54 0.00 31.88 3.51
3139 7203 5.920193 ACAAAAATCAATGGATCGATGGT 57.080 34.783 0.54 0.00 31.88 3.55
3140 7204 5.653507 ACAAAAATCAATGGATCGATGGTG 58.346 37.500 0.54 0.00 31.88 4.17
3141 7205 5.418524 ACAAAAATCAATGGATCGATGGTGA 59.581 36.000 0.54 0.78 31.88 4.02
3142 7206 6.097270 ACAAAAATCAATGGATCGATGGTGAT 59.903 34.615 0.54 3.32 31.88 3.06
3143 7207 6.720112 AAAATCAATGGATCGATGGTGATT 57.280 33.333 0.54 9.32 37.31 2.57
3144 7208 5.954296 AATCAATGGATCGATGGTGATTC 57.046 39.130 0.54 0.00 31.75 2.52
3145 7209 3.392882 TCAATGGATCGATGGTGATTCG 58.607 45.455 0.54 0.00 37.94 3.34
3152 7216 2.876091 TCGATGGTGATTCGAACTCAC 58.124 47.619 22.10 22.10 42.21 3.51
3153 7217 1.583856 CGATGGTGATTCGAACTCACG 59.416 52.381 22.73 14.13 43.16 4.35
3154 7218 2.731027 CGATGGTGATTCGAACTCACGA 60.731 50.000 22.73 21.08 43.16 4.35
3155 7219 3.448686 GATGGTGATTCGAACTCACGAT 58.551 45.455 24.05 24.05 42.45 3.73
3156 7220 2.876091 TGGTGATTCGAACTCACGATC 58.124 47.619 22.73 15.15 43.16 3.69
3157 7221 1.846782 GGTGATTCGAACTCACGATCG 59.153 52.381 22.73 14.88 43.16 3.69
3158 7222 1.253034 GTGATTCGAACTCACGATCGC 59.747 52.381 16.60 7.45 41.82 4.58
3159 7223 0.494788 GATTCGAACTCACGATCGCG 59.505 55.000 16.60 5.75 41.82 5.87
3174 7238 2.248431 GCGTTGTTGCGAGTCCAC 59.752 61.111 0.00 0.00 0.00 4.02
3175 7239 2.935955 CGTTGTTGCGAGTCCACC 59.064 61.111 0.00 0.00 0.00 4.61
3176 7240 1.594293 CGTTGTTGCGAGTCCACCT 60.594 57.895 0.00 0.00 0.00 4.00
3177 7241 1.557443 CGTTGTTGCGAGTCCACCTC 61.557 60.000 0.00 0.00 36.80 3.85
3185 7249 2.273908 GAGTCCACCTCGCTAACCA 58.726 57.895 0.00 0.00 0.00 3.67
3186 7250 0.108756 GAGTCCACCTCGCTAACCAC 60.109 60.000 0.00 0.00 0.00 4.16
3187 7251 0.542232 AGTCCACCTCGCTAACCACT 60.542 55.000 0.00 0.00 0.00 4.00
3188 7252 0.320697 GTCCACCTCGCTAACCACTT 59.679 55.000 0.00 0.00 0.00 3.16
3189 7253 0.320374 TCCACCTCGCTAACCACTTG 59.680 55.000 0.00 0.00 0.00 3.16
3190 7254 0.320374 CCACCTCGCTAACCACTTGA 59.680 55.000 0.00 0.00 0.00 3.02
3191 7255 1.429463 CACCTCGCTAACCACTTGAC 58.571 55.000 0.00 0.00 0.00 3.18
3192 7256 0.320697 ACCTCGCTAACCACTTGACC 59.679 55.000 0.00 0.00 0.00 4.02
3193 7257 0.320374 CCTCGCTAACCACTTGACCA 59.680 55.000 0.00 0.00 0.00 4.02
3194 7258 1.270625 CCTCGCTAACCACTTGACCAA 60.271 52.381 0.00 0.00 0.00 3.67
3195 7259 2.489971 CTCGCTAACCACTTGACCAAA 58.510 47.619 0.00 0.00 0.00 3.28
3196 7260 2.215196 TCGCTAACCACTTGACCAAAC 58.785 47.619 0.00 0.00 0.00 2.93
3197 7261 2.158871 TCGCTAACCACTTGACCAAACT 60.159 45.455 0.00 0.00 0.00 2.66
3198 7262 3.069872 TCGCTAACCACTTGACCAAACTA 59.930 43.478 0.00 0.00 0.00 2.24
3199 7263 3.810941 CGCTAACCACTTGACCAAACTAA 59.189 43.478 0.00 0.00 0.00 2.24
3200 7264 4.319261 CGCTAACCACTTGACCAAACTAAC 60.319 45.833 0.00 0.00 0.00 2.34
3201 7265 4.820173 GCTAACCACTTGACCAAACTAACT 59.180 41.667 0.00 0.00 0.00 2.24
3202 7266 5.298527 GCTAACCACTTGACCAAACTAACTT 59.701 40.000 0.00 0.00 0.00 2.66
3203 7267 6.183360 GCTAACCACTTGACCAAACTAACTTT 60.183 38.462 0.00 0.00 0.00 2.66
3204 7268 5.830000 ACCACTTGACCAAACTAACTTTC 57.170 39.130 0.00 0.00 0.00 2.62
3205 7269 5.506708 ACCACTTGACCAAACTAACTTTCT 58.493 37.500 0.00 0.00 0.00 2.52
3206 7270 5.949952 ACCACTTGACCAAACTAACTTTCTT 59.050 36.000 0.00 0.00 0.00 2.52
3207 7271 7.114095 ACCACTTGACCAAACTAACTTTCTTA 58.886 34.615 0.00 0.00 0.00 2.10
3208 7272 7.778382 ACCACTTGACCAAACTAACTTTCTTAT 59.222 33.333 0.00 0.00 0.00 1.73
3209 7273 8.290325 CCACTTGACCAAACTAACTTTCTTATC 58.710 37.037 0.00 0.00 0.00 1.75
3210 7274 8.290325 CACTTGACCAAACTAACTTTCTTATCC 58.710 37.037 0.00 0.00 0.00 2.59
3211 7275 7.996644 ACTTGACCAAACTAACTTTCTTATCCA 59.003 33.333 0.00 0.00 0.00 3.41
3212 7276 7.739498 TGACCAAACTAACTTTCTTATCCAC 57.261 36.000 0.00 0.00 0.00 4.02
3213 7277 7.514721 TGACCAAACTAACTTTCTTATCCACT 58.485 34.615 0.00 0.00 0.00 4.00
3214 7278 8.653191 TGACCAAACTAACTTTCTTATCCACTA 58.347 33.333 0.00 0.00 0.00 2.74
3215 7279 9.498176 GACCAAACTAACTTTCTTATCCACTAA 57.502 33.333 0.00 0.00 0.00 2.24
3216 7280 9.503399 ACCAAACTAACTTTCTTATCCACTAAG 57.497 33.333 0.00 0.00 38.58 2.18
3217 7281 9.720769 CCAAACTAACTTTCTTATCCACTAAGA 57.279 33.333 0.00 0.00 43.26 2.10
3224 7288 9.847224 AACTTTCTTATCCACTAAGAGAAAACA 57.153 29.630 0.00 0.00 45.07 2.83
3225 7289 9.495572 ACTTTCTTATCCACTAAGAGAAAACAG 57.504 33.333 0.00 0.00 45.07 3.16
3226 7290 9.495572 CTTTCTTATCCACTAAGAGAAAACAGT 57.504 33.333 0.00 0.00 45.07 3.55
3227 7291 9.847224 TTTCTTATCCACTAAGAGAAAACAGTT 57.153 29.630 0.00 0.00 45.07 3.16
3228 7292 9.490379 TTCTTATCCACTAAGAGAAAACAGTTC 57.510 33.333 0.00 0.00 45.07 3.01
3229 7293 8.871125 TCTTATCCACTAAGAGAAAACAGTTCT 58.129 33.333 0.00 0.00 40.72 3.01
3232 7296 7.598759 TCCACTAAGAGAAAACAGTTCTAGT 57.401 36.000 0.00 0.00 0.00 2.57
3233 7297 8.019656 TCCACTAAGAGAAAACAGTTCTAGTT 57.980 34.615 0.00 0.00 0.00 2.24
3234 7298 9.139734 TCCACTAAGAGAAAACAGTTCTAGTTA 57.860 33.333 0.00 0.00 0.00 2.24
3235 7299 9.760077 CCACTAAGAGAAAACAGTTCTAGTTAA 57.240 33.333 0.00 0.00 0.00 2.01
3237 7301 9.761504 ACTAAGAGAAAACAGTTCTAGTTAACC 57.238 33.333 0.88 0.00 0.00 2.85
3238 7302 9.760077 CTAAGAGAAAACAGTTCTAGTTAACCA 57.240 33.333 0.88 0.00 0.00 3.67
3240 7304 8.834749 AGAGAAAACAGTTCTAGTTAACCATC 57.165 34.615 0.88 0.00 0.00 3.51
3241 7305 8.652290 AGAGAAAACAGTTCTAGTTAACCATCT 58.348 33.333 0.88 0.00 0.00 2.90
3242 7306 8.834749 AGAAAACAGTTCTAGTTAACCATCTC 57.165 34.615 0.88 0.00 0.00 2.75
3243 7307 7.599245 AGAAAACAGTTCTAGTTAACCATCTCG 59.401 37.037 0.88 0.00 0.00 4.04
3244 7308 4.745649 ACAGTTCTAGTTAACCATCTCGC 58.254 43.478 0.88 0.00 0.00 5.03
3245 7309 3.791887 CAGTTCTAGTTAACCATCTCGCG 59.208 47.826 0.00 0.00 0.00 5.87
3246 7310 2.486951 TCTAGTTAACCATCTCGCGC 57.513 50.000 0.00 0.00 0.00 6.86
3247 7311 1.746787 TCTAGTTAACCATCTCGCGCA 59.253 47.619 8.75 0.00 0.00 6.09
3248 7312 2.120232 CTAGTTAACCATCTCGCGCAG 58.880 52.381 8.75 4.17 0.00 5.18
3249 7313 0.246635 AGTTAACCATCTCGCGCAGT 59.753 50.000 8.75 0.00 0.00 4.40
3250 7314 1.076332 GTTAACCATCTCGCGCAGTT 58.924 50.000 8.75 2.71 0.00 3.16
3251 7315 2.094390 AGTTAACCATCTCGCGCAGTTA 60.094 45.455 8.75 1.68 0.00 2.24
3252 7316 2.658373 TAACCATCTCGCGCAGTTAA 57.342 45.000 8.75 0.00 0.00 2.01
3253 7317 1.803334 AACCATCTCGCGCAGTTAAA 58.197 45.000 8.75 0.00 0.00 1.52
3254 7318 1.076332 ACCATCTCGCGCAGTTAAAC 58.924 50.000 8.75 0.00 0.00 2.01
3255 7319 1.075542 CCATCTCGCGCAGTTAAACA 58.924 50.000 8.75 0.00 0.00 2.83
3256 7320 1.665679 CCATCTCGCGCAGTTAAACAT 59.334 47.619 8.75 0.00 0.00 2.71
3257 7321 2.095853 CCATCTCGCGCAGTTAAACATT 59.904 45.455 8.75 0.00 0.00 2.71
3258 7322 3.308595 CCATCTCGCGCAGTTAAACATTA 59.691 43.478 8.75 0.00 0.00 1.90
3259 7323 4.201773 CCATCTCGCGCAGTTAAACATTAA 60.202 41.667 8.75 0.00 0.00 1.40
3260 7324 5.501715 CATCTCGCGCAGTTAAACATTAAT 58.498 37.500 8.75 0.00 0.00 1.40
3261 7325 6.292649 CCATCTCGCGCAGTTAAACATTAATA 60.293 38.462 8.75 0.00 0.00 0.98
3262 7326 6.838198 TCTCGCGCAGTTAAACATTAATAT 57.162 33.333 8.75 0.00 0.00 1.28
3263 7327 7.933728 TCTCGCGCAGTTAAACATTAATATA 57.066 32.000 8.75 0.00 0.00 0.86
3264 7328 8.528917 TCTCGCGCAGTTAAACATTAATATAT 57.471 30.769 8.75 0.00 0.00 0.86
3265 7329 9.628746 TCTCGCGCAGTTAAACATTAATATATA 57.371 29.630 8.75 0.00 0.00 0.86
3266 7330 9.671521 CTCGCGCAGTTAAACATTAATATATAC 57.328 33.333 8.75 0.00 0.00 1.47
3267 7331 9.414295 TCGCGCAGTTAAACATTAATATATACT 57.586 29.630 8.75 0.00 0.00 2.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.131638 AAGGTCTTCACTGGCTCACA 58.868 50.000 0.00 0.00 0.00 3.58
1 2 1.202698 ACAAGGTCTTCACTGGCTCAC 60.203 52.381 0.00 0.00 0.00 3.51
2 3 1.131638 ACAAGGTCTTCACTGGCTCA 58.868 50.000 0.00 0.00 0.00 4.26
3 4 1.517242 CACAAGGTCTTCACTGGCTC 58.483 55.000 0.00 0.00 0.00 4.70
4 5 0.109342 CCACAAGGTCTTCACTGGCT 59.891 55.000 0.00 0.00 0.00 4.75
5 6 1.518903 GCCACAAGGTCTTCACTGGC 61.519 60.000 7.44 7.44 37.62 4.85
6 7 0.109342 AGCCACAAGGTCTTCACTGG 59.891 55.000 0.00 0.00 37.19 4.00
7 8 1.202687 TGAGCCACAAGGTCTTCACTG 60.203 52.381 0.00 0.00 43.71 3.66
8 9 1.131638 TGAGCCACAAGGTCTTCACT 58.868 50.000 0.00 0.00 43.71 3.41
9 10 2.191128 ATGAGCCACAAGGTCTTCAC 57.809 50.000 0.00 0.00 43.71 3.18
10 11 2.158623 ACAATGAGCCACAAGGTCTTCA 60.159 45.455 0.00 0.00 43.71 3.02
11 12 2.485814 GACAATGAGCCACAAGGTCTTC 59.514 50.000 0.00 0.00 43.71 2.87
12 13 2.107204 AGACAATGAGCCACAAGGTCTT 59.893 45.455 10.38 0.00 43.71 3.01
13 14 1.701847 AGACAATGAGCCACAAGGTCT 59.298 47.619 10.38 10.38 43.71 3.85
14 15 2.079925 GAGACAATGAGCCACAAGGTC 58.920 52.381 0.00 0.00 43.62 3.85
15 16 1.609061 CGAGACAATGAGCCACAAGGT 60.609 52.381 0.00 0.00 37.19 3.50
16 17 1.081892 CGAGACAATGAGCCACAAGG 58.918 55.000 0.00 0.00 38.23 3.61
17 18 1.800805 ACGAGACAATGAGCCACAAG 58.199 50.000 0.00 0.00 0.00 3.16
18 19 3.056179 TGATACGAGACAATGAGCCACAA 60.056 43.478 0.00 0.00 0.00 3.33
19 20 2.495669 TGATACGAGACAATGAGCCACA 59.504 45.455 0.00 0.00 0.00 4.17
20 21 3.165058 TGATACGAGACAATGAGCCAC 57.835 47.619 0.00 0.00 0.00 5.01
21 22 3.243873 GGATGATACGAGACAATGAGCCA 60.244 47.826 0.00 0.00 0.00 4.75
22 23 3.321497 GGATGATACGAGACAATGAGCC 58.679 50.000 0.00 0.00 0.00 4.70
23 24 3.243873 TGGGATGATACGAGACAATGAGC 60.244 47.826 0.00 0.00 0.00 4.26
24 25 4.590850 TGGGATGATACGAGACAATGAG 57.409 45.455 0.00 0.00 0.00 2.90
25 26 4.800582 GCATGGGATGATACGAGACAATGA 60.801 45.833 0.00 0.00 0.00 2.57
26 27 3.434641 GCATGGGATGATACGAGACAATG 59.565 47.826 0.00 0.00 0.00 2.82
27 28 3.326006 AGCATGGGATGATACGAGACAAT 59.674 43.478 0.00 0.00 0.00 2.71
28 29 2.700371 AGCATGGGATGATACGAGACAA 59.300 45.455 0.00 0.00 0.00 3.18
29 30 2.297315 GAGCATGGGATGATACGAGACA 59.703 50.000 0.00 0.00 0.00 3.41
30 31 2.560542 AGAGCATGGGATGATACGAGAC 59.439 50.000 0.00 0.00 0.00 3.36
31 32 2.881734 AGAGCATGGGATGATACGAGA 58.118 47.619 0.00 0.00 0.00 4.04
32 33 3.006217 TGAAGAGCATGGGATGATACGAG 59.994 47.826 0.00 0.00 0.00 4.18
33 34 2.965147 TGAAGAGCATGGGATGATACGA 59.035 45.455 0.00 0.00 0.00 3.43
34 35 3.391506 TGAAGAGCATGGGATGATACG 57.608 47.619 0.00 0.00 0.00 3.06
45 46 2.001361 GCAAGGCGCATGAAGAGCAT 62.001 55.000 10.83 0.00 45.74 3.79
46 47 2.693762 GCAAGGCGCATGAAGAGCA 61.694 57.895 10.83 0.00 45.74 4.26
47 48 1.091771 TAGCAAGGCGCATGAAGAGC 61.092 55.000 10.83 2.43 46.13 4.09
48 49 1.530293 GATAGCAAGGCGCATGAAGAG 59.470 52.381 10.83 0.00 46.13 2.85
49 50 1.586422 GATAGCAAGGCGCATGAAGA 58.414 50.000 10.83 0.00 46.13 2.87
50 51 0.234106 CGATAGCAAGGCGCATGAAG 59.766 55.000 10.83 0.00 46.13 3.02
51 52 2.310309 CGATAGCAAGGCGCATGAA 58.690 52.632 10.83 0.00 46.13 2.57
52 53 4.032356 CGATAGCAAGGCGCATGA 57.968 55.556 10.83 0.00 46.13 3.07
116 117 1.442857 CGCGACGAGGATCATAGGC 60.443 63.158 0.00 0.00 33.17 3.93
120 121 2.328289 CGACGCGACGAGGATCAT 59.672 61.111 25.89 0.00 35.09 2.45
127 128 4.170062 GATCCCACGACGCGACGA 62.170 66.667 34.99 14.96 37.03 4.20
129 130 2.879462 GTGATCCCACGACGCGAC 60.879 66.667 15.93 5.54 33.10 5.19
165 166 0.469705 TGGCAACTTTGTGGAGGCAT 60.470 50.000 0.00 0.00 37.61 4.40
166 167 1.076412 TGGCAACTTTGTGGAGGCA 60.076 52.632 0.00 0.00 37.61 4.75
202 206 3.236047 GGATTTGGTAGGTTTGGTGGTT 58.764 45.455 0.00 0.00 0.00 3.67
225 229 2.048222 CCTCTTTGTCGCCAGCGA 60.048 61.111 11.27 11.27 46.87 4.93
226 230 2.048222 TCCTCTTTGTCGCCAGCG 60.048 61.111 5.50 5.50 41.35 5.18
227 231 1.004440 ACTCCTCTTTGTCGCCAGC 60.004 57.895 0.00 0.00 0.00 4.85
228 232 1.294659 GCACTCCTCTTTGTCGCCAG 61.295 60.000 0.00 0.00 0.00 4.85
229 233 1.301716 GCACTCCTCTTTGTCGCCA 60.302 57.895 0.00 0.00 0.00 5.69
230 234 2.035442 GGCACTCCTCTTTGTCGCC 61.035 63.158 0.00 0.00 0.00 5.54
231 235 0.674895 ATGGCACTCCTCTTTGTCGC 60.675 55.000 0.00 0.00 0.00 5.19
232 236 1.081892 CATGGCACTCCTCTTTGTCG 58.918 55.000 0.00 0.00 0.00 4.35
233 237 0.807496 GCATGGCACTCCTCTTTGTC 59.193 55.000 0.00 0.00 0.00 3.18
234 238 0.610232 GGCATGGCACTCCTCTTTGT 60.610 55.000 15.47 0.00 0.00 2.83
235 239 0.609957 TGGCATGGCACTCCTCTTTG 60.610 55.000 19.43 0.00 0.00 2.77
236 240 0.323178 CTGGCATGGCACTCCTCTTT 60.323 55.000 19.43 0.00 0.00 2.52
237 241 1.203441 TCTGGCATGGCACTCCTCTT 61.203 55.000 19.43 0.00 0.00 2.85
238 242 1.614525 TCTGGCATGGCACTCCTCT 60.615 57.895 19.43 0.00 0.00 3.69
239 243 1.153208 CTCTGGCATGGCACTCCTC 60.153 63.158 19.43 0.00 0.00 3.71
240 244 1.203441 TTCTCTGGCATGGCACTCCT 61.203 55.000 19.43 0.00 0.00 3.69
241 245 0.747283 CTTCTCTGGCATGGCACTCC 60.747 60.000 19.43 0.00 0.00 3.85
242 246 0.747283 CCTTCTCTGGCATGGCACTC 60.747 60.000 19.43 0.00 0.00 3.51
243 247 1.203441 TCCTTCTCTGGCATGGCACT 61.203 55.000 19.43 0.00 0.00 4.40
244 248 0.106819 ATCCTTCTCTGGCATGGCAC 60.107 55.000 19.43 0.00 0.00 5.01
245 249 0.627451 AATCCTTCTCTGGCATGGCA 59.373 50.000 21.97 21.97 0.00 4.92
246 250 1.407979 CAAATCCTTCTCTGGCATGGC 59.592 52.381 13.29 13.29 0.00 4.40
247 251 2.029623 CCAAATCCTTCTCTGGCATGG 58.970 52.381 0.00 0.00 0.00 3.66
248 252 3.008835 TCCAAATCCTTCTCTGGCATG 57.991 47.619 0.00 0.00 0.00 4.06
252 256 2.751806 GTGCTTCCAAATCCTTCTCTGG 59.248 50.000 0.00 0.00 0.00 3.86
282 286 5.123502 GCTCCCATGATAGCAATGTTATCAG 59.876 44.000 21.05 14.14 39.96 2.90
301 305 1.077429 GACCATGGGTTCTGCTCCC 60.077 63.158 18.09 0.00 44.81 4.30
311 315 1.743995 GGTTTCGACCGACCATGGG 60.744 63.158 18.09 0.00 35.95 4.00
350 354 4.959560 TGCCCGGCTTGTATAGTATTAA 57.040 40.909 11.61 0.00 0.00 1.40
365 369 4.181010 CCTGACCCTCATGCCCGG 62.181 72.222 0.00 0.00 0.00 5.73
367 371 2.155197 AAACCCTGACCCTCATGCCC 62.155 60.000 0.00 0.00 0.00 5.36
368 372 0.967380 CAAACCCTGACCCTCATGCC 60.967 60.000 0.00 0.00 0.00 4.40
374 378 2.452491 AGGCCAAACCCTGACCCT 60.452 61.111 5.01 0.00 40.58 4.34
377 381 0.609406 GAAGGAGGCCAAACCCTGAC 60.609 60.000 5.01 0.89 40.58 3.51
413 417 1.415659 CCTCCCATGATGACCTCTGAC 59.584 57.143 0.00 0.00 0.00 3.51
418 425 1.504912 CTGTCCTCCCATGATGACCT 58.495 55.000 0.00 0.00 35.85 3.85
419 426 0.179034 GCTGTCCTCCCATGATGACC 60.179 60.000 0.00 0.00 35.85 4.02
420 427 0.835941 AGCTGTCCTCCCATGATGAC 59.164 55.000 0.00 0.00 36.86 3.06
427 434 3.324930 CCAGCAGCTGTCCTCCCA 61.325 66.667 21.26 0.00 0.00 4.37
435 442 1.287730 GACGTTGTCTCCAGCAGCTG 61.288 60.000 16.23 16.23 0.00 4.24
439 446 2.338620 CCGACGTTGTCTCCAGCA 59.661 61.111 1.30 0.00 0.00 4.41
488 495 1.372501 TTCCCTTCCTCCCCAAAGAG 58.627 55.000 0.00 0.00 0.00 2.85
489 496 1.841334 TTTCCCTTCCTCCCCAAAGA 58.159 50.000 0.00 0.00 0.00 2.52
490 497 2.694616 TTTTCCCTTCCTCCCCAAAG 57.305 50.000 0.00 0.00 0.00 2.77
513 524 3.071479 GGAGTATGTTGAAACCGCTTGA 58.929 45.455 0.00 0.00 0.00 3.02
532 545 5.543714 TCTTTCGTTAGCACAACATAAGGA 58.456 37.500 2.63 0.17 0.00 3.36
533 546 5.856126 TCTTTCGTTAGCACAACATAAGG 57.144 39.130 2.63 0.00 0.00 2.69
534 547 7.478667 GTCAATCTTTCGTTAGCACAACATAAG 59.521 37.037 2.63 4.72 0.00 1.73
540 559 5.106712 GGATGTCAATCTTTCGTTAGCACAA 60.107 40.000 0.00 0.00 32.95 3.33
543 562 4.832248 AGGATGTCAATCTTTCGTTAGCA 58.168 39.130 0.00 0.00 32.95 3.49
558 577 4.253685 TCGAATTTGACAAGGAGGATGTC 58.746 43.478 0.00 0.00 45.82 3.06
559 578 4.020218 TCTCGAATTTGACAAGGAGGATGT 60.020 41.667 0.00 0.00 0.00 3.06
560 579 4.331168 GTCTCGAATTTGACAAGGAGGATG 59.669 45.833 0.00 0.00 33.75 3.51
561 580 4.508662 GTCTCGAATTTGACAAGGAGGAT 58.491 43.478 0.00 0.00 33.75 3.24
562 581 3.306780 GGTCTCGAATTTGACAAGGAGGA 60.307 47.826 5.09 0.00 35.11 3.71
586 645 5.689961 GCCATACAAATTTTGTGTTCGAGTT 59.310 36.000 22.04 0.00 45.03 3.01
591 650 6.091169 CCATCTGCCATACAAATTTTGTGTTC 59.909 38.462 22.04 11.42 45.03 3.18
596 655 3.872771 GCCCATCTGCCATACAAATTTTG 59.127 43.478 7.59 7.59 0.00 2.44
600 659 2.313317 CTGCCCATCTGCCATACAAAT 58.687 47.619 0.00 0.00 0.00 2.32
616 675 2.939460 ATGTAAATTTGACCGCTGCC 57.061 45.000 0.00 0.00 0.00 4.85
617 676 6.142320 GCTATAAATGTAAATTTGACCGCTGC 59.858 38.462 0.00 0.00 0.00 5.25
618 677 7.192913 TGCTATAAATGTAAATTTGACCGCTG 58.807 34.615 0.00 0.00 0.00 5.18
644 744 9.679661 TGTCTTCCAAGTTGAGCATATAAATTA 57.320 29.630 3.87 0.00 0.00 1.40
645 745 8.579850 TGTCTTCCAAGTTGAGCATATAAATT 57.420 30.769 3.87 0.00 0.00 1.82
720 823 4.080299 GGTTTGGTGGAGTAGATGGAGAAT 60.080 45.833 0.00 0.00 0.00 2.40
744 847 1.415126 GGGGAGAGAGATGGGGATTGA 60.415 57.143 0.00 0.00 0.00 2.57
746 849 0.104197 GGGGGAGAGAGATGGGGATT 60.104 60.000 0.00 0.00 0.00 3.01
760 863 1.627019 GAAGGAGAGCCTAGGGGGA 59.373 63.158 11.72 0.00 46.28 4.81
761 864 1.834822 CGAAGGAGAGCCTAGGGGG 60.835 68.421 11.72 0.00 46.28 5.40
856 959 1.281925 ATCCACCCGCCTGGAAAGAT 61.282 55.000 0.00 0.00 43.79 2.40
1113 1216 6.049955 TGTAGGGAAGAAACAAGATACAGG 57.950 41.667 0.00 0.00 0.00 4.00
1182 1285 0.321298 ATAACACCGTCACAGTGGGC 60.321 55.000 0.00 0.00 39.63 5.36
1192 1295 2.372264 TCTTCGCCTAGATAACACCGT 58.628 47.619 0.00 0.00 0.00 4.83
1365 1480 7.375834 ACGATACTGACAGAACAATGACTAAA 58.624 34.615 10.08 0.00 0.00 1.85
1413 1529 8.469200 TGGTTAATCATTGAACATCATCTTTCC 58.531 33.333 0.00 0.00 0.00 3.13
1519 1636 0.310854 GTCAAGCACCCCAAAAGACG 59.689 55.000 0.00 0.00 0.00 4.18
1589 1706 9.905713 AATGCATATTACTATTAACCATCGGAT 57.094 29.630 0.00 0.00 0.00 4.18
1652 2521 4.462133 TGAACAATTCCGAGGTGGTTTAA 58.538 39.130 0.00 0.00 39.52 1.52
1960 2830 5.593909 TCATCAAACAGGAATTGTGAACTGT 59.406 36.000 0.00 0.00 45.34 3.55
1976 2846 7.276658 AGTGATAGTTCGATCTGTTCATCAAAC 59.723 37.037 6.25 0.00 38.43 2.93
2268 3139 7.672983 ACAACACATAAGAGTTTGATCGATT 57.327 32.000 0.00 0.00 0.00 3.34
2312 3183 1.390123 ACGCAGAAATCGTTGTCATCG 59.610 47.619 0.00 0.00 36.72 3.84
2325 3196 1.035923 TGCCAAATCCAAACGCAGAA 58.964 45.000 0.00 0.00 0.00 3.02
2421 3292 3.130160 GAAAGGCTGGCTGCGGAG 61.130 66.667 3.84 0.00 44.05 4.63
2538 3412 3.507622 AGGAACAAGAAAGCTGTAATGCC 59.492 43.478 0.00 0.00 0.00 4.40
2587 3461 1.064505 CGGCTATGTGCATTGACAAGG 59.935 52.381 0.00 0.00 45.15 3.61
2613 3487 0.529992 GCTCCGGGGTCGATAACTTG 60.530 60.000 1.62 0.00 39.00 3.16
2676 3550 2.282783 GGCGGGGACAAGGCAAAAT 61.283 57.895 0.00 0.00 33.79 1.82
2747 6811 5.393027 CCCTTGATAAACAAATGGAACCGAG 60.393 44.000 0.00 0.00 38.08 4.63
2834 6898 2.083628 TTAGCCGAAACCCCCAAAAA 57.916 45.000 0.00 0.00 0.00 1.94
2835 6899 2.312424 ATTAGCCGAAACCCCCAAAA 57.688 45.000 0.00 0.00 0.00 2.44
2836 6900 3.673543 ATATTAGCCGAAACCCCCAAA 57.326 42.857 0.00 0.00 0.00 3.28
2837 6901 3.673543 AATATTAGCCGAAACCCCCAA 57.326 42.857 0.00 0.00 0.00 4.12
2838 6902 3.292460 CAAATATTAGCCGAAACCCCCA 58.708 45.455 0.00 0.00 0.00 4.96
2839 6903 3.293337 ACAAATATTAGCCGAAACCCCC 58.707 45.455 0.00 0.00 0.00 5.40
2840 6904 4.204799 AGACAAATATTAGCCGAAACCCC 58.795 43.478 0.00 0.00 0.00 4.95
2854 6918 7.041712 TGCAATACGTCTGAAACAAGACAAATA 60.042 33.333 0.00 0.00 45.77 1.40
2875 6939 5.537188 ACAACCAACGAAACATTATGCAAT 58.463 33.333 0.00 0.00 0.00 3.56
2939 7003 0.098728 GGACAAAATGGATCGCCGTG 59.901 55.000 0.00 0.00 36.79 4.94
2940 7004 1.366111 CGGACAAAATGGATCGCCGT 61.366 55.000 0.00 0.00 36.79 5.68
2961 7025 3.777016 GCGACCCAAAAATACGCAA 57.223 47.368 0.00 0.00 46.75 4.85
2964 7028 1.202245 CCATGGCGACCCAAAAATACG 60.202 52.381 0.00 0.00 46.14 3.06
2968 7032 1.519751 CGTCCATGGCGACCCAAAAA 61.520 55.000 19.72 0.00 46.14 1.94
2969 7033 1.969064 CGTCCATGGCGACCCAAAA 60.969 57.895 19.72 0.00 46.14 2.44
2981 7045 1.322538 GGGCCAGCATTTTCGTCCAT 61.323 55.000 4.39 0.00 0.00 3.41
2982 7046 1.976474 GGGCCAGCATTTTCGTCCA 60.976 57.895 4.39 0.00 0.00 4.02
2987 7051 1.085501 CGCATTGGGCCAGCATTTTC 61.086 55.000 16.87 0.00 40.31 2.29
3007 7071 1.211709 CATTTTTGTCCCGGGTCGC 59.788 57.895 22.86 12.81 0.00 5.19
3010 7074 1.184970 CCAGCATTTTTGTCCCGGGT 61.185 55.000 22.86 0.00 0.00 5.28
3014 7078 1.296392 GGGCCAGCATTTTTGTCCC 59.704 57.895 4.39 0.00 0.00 4.46
3015 7079 0.396060 TTGGGCCAGCATTTTTGTCC 59.604 50.000 6.23 0.00 0.00 4.02
3016 7080 1.511850 GTTGGGCCAGCATTTTTGTC 58.488 50.000 16.19 0.00 0.00 3.18
3017 7081 0.249826 CGTTGGGCCAGCATTTTTGT 60.250 50.000 20.77 0.00 0.00 2.83
3018 7082 1.567746 GCGTTGGGCCAGCATTTTTG 61.568 55.000 20.77 3.81 34.80 2.44
3019 7083 1.301637 GCGTTGGGCCAGCATTTTT 60.302 52.632 20.77 0.00 34.80 1.94
3020 7084 2.343387 GCGTTGGGCCAGCATTTT 59.657 55.556 20.77 0.00 34.80 1.82
3021 7085 4.054825 CGCGTTGGGCCAGCATTT 62.055 61.111 20.77 0.00 38.94 2.32
3032 7096 3.732892 AAATGGGTCGGCGCGTTG 61.733 61.111 12.62 0.00 36.96 4.10
3033 7097 3.732892 CAAATGGGTCGGCGCGTT 61.733 61.111 8.43 5.61 38.23 4.84
3036 7100 3.565910 TTTGCAAATGGGTCGGCGC 62.566 57.895 8.05 0.00 0.00 6.53
3037 7101 1.006805 TTTTGCAAATGGGTCGGCG 60.007 52.632 13.65 0.00 0.00 6.46
3038 7102 0.249657 TGTTTTGCAAATGGGTCGGC 60.250 50.000 13.65 0.00 0.00 5.54
3039 7103 1.496934 GTGTTTTGCAAATGGGTCGG 58.503 50.000 13.65 0.00 0.00 4.79
3040 7104 1.127701 CGTGTTTTGCAAATGGGTCG 58.872 50.000 13.65 9.94 0.00 4.79
3041 7105 2.124122 GACGTGTTTTGCAAATGGGTC 58.876 47.619 13.65 13.66 0.00 4.46
3042 7106 1.754226 AGACGTGTTTTGCAAATGGGT 59.246 42.857 13.65 8.87 0.00 4.51
3043 7107 2.126467 CAGACGTGTTTTGCAAATGGG 58.874 47.619 13.65 5.67 0.00 4.00
3044 7108 1.522258 GCAGACGTGTTTTGCAAATGG 59.478 47.619 13.65 5.32 37.75 3.16
3045 7109 2.191802 TGCAGACGTGTTTTGCAAATG 58.808 42.857 13.65 7.50 44.13 2.32
3046 7110 2.462889 CTGCAGACGTGTTTTGCAAAT 58.537 42.857 13.65 0.00 46.08 2.32
3047 7111 1.906757 CTGCAGACGTGTTTTGCAAA 58.093 45.000 8.42 8.05 46.08 3.68
3048 7112 0.525242 GCTGCAGACGTGTTTTGCAA 60.525 50.000 20.43 0.00 46.08 4.08
3049 7113 1.063972 GCTGCAGACGTGTTTTGCA 59.936 52.632 20.43 2.87 44.81 4.08
3050 7114 2.005537 CGCTGCAGACGTGTTTTGC 61.006 57.895 20.43 0.00 38.30 3.68
3051 7115 2.005537 GCGCTGCAGACGTGTTTTG 61.006 57.895 20.43 0.00 0.00 2.44
3052 7116 2.327940 GCGCTGCAGACGTGTTTT 59.672 55.556 20.43 0.00 0.00 2.43
3053 7117 3.649986 GGCGCTGCAGACGTGTTT 61.650 61.111 20.43 0.00 0.00 2.83
3086 7150 1.781025 TTCAACAAGCGCGAGTTGGG 61.781 55.000 32.45 18.12 43.91 4.12
3087 7151 0.384725 CTTCAACAAGCGCGAGTTGG 60.385 55.000 32.45 21.00 43.91 3.77
3088 7152 0.304705 ACTTCAACAAGCGCGAGTTG 59.695 50.000 29.77 29.77 44.84 3.16
3089 7153 0.304705 CACTTCAACAAGCGCGAGTT 59.695 50.000 12.10 13.55 32.09 3.01
3090 7154 0.529773 TCACTTCAACAAGCGCGAGT 60.530 50.000 12.10 0.82 32.09 4.18
3091 7155 0.581529 TTCACTTCAACAAGCGCGAG 59.418 50.000 12.10 0.01 32.09 5.03
3092 7156 1.010580 TTTCACTTCAACAAGCGCGA 58.989 45.000 12.10 0.00 32.09 5.87
3093 7157 1.821336 TTTTCACTTCAACAAGCGCG 58.179 45.000 0.00 0.00 32.09 6.86
3112 7176 9.316730 CCATCGATCCATTGATTTTTGTAATTT 57.683 29.630 0.00 0.00 0.00 1.82
3113 7177 8.477256 ACCATCGATCCATTGATTTTTGTAATT 58.523 29.630 0.00 0.00 0.00 1.40
3114 7178 7.922278 CACCATCGATCCATTGATTTTTGTAAT 59.078 33.333 0.00 0.00 0.00 1.89
3115 7179 7.121907 TCACCATCGATCCATTGATTTTTGTAA 59.878 33.333 0.00 0.00 0.00 2.41
3116 7180 6.601217 TCACCATCGATCCATTGATTTTTGTA 59.399 34.615 0.00 0.00 0.00 2.41
3117 7181 5.418524 TCACCATCGATCCATTGATTTTTGT 59.581 36.000 0.00 0.00 0.00 2.83
3118 7182 5.893687 TCACCATCGATCCATTGATTTTTG 58.106 37.500 0.00 0.00 0.00 2.44
3119 7183 6.720112 ATCACCATCGATCCATTGATTTTT 57.280 33.333 0.00 0.00 0.00 1.94
3120 7184 6.513884 CGAATCACCATCGATCCATTGATTTT 60.514 38.462 15.94 2.96 42.76 1.82
3121 7185 5.049198 CGAATCACCATCGATCCATTGATTT 60.049 40.000 15.94 6.00 42.76 2.17
3122 7186 4.453478 CGAATCACCATCGATCCATTGATT 59.547 41.667 15.23 15.23 42.76 2.57
3123 7187 3.999001 CGAATCACCATCGATCCATTGAT 59.001 43.478 0.00 0.00 42.76 2.57
3124 7188 3.069443 TCGAATCACCATCGATCCATTGA 59.931 43.478 0.00 0.00 43.76 2.57
3125 7189 3.392882 TCGAATCACCATCGATCCATTG 58.607 45.455 0.00 0.00 43.76 2.82
3126 7190 3.751479 TCGAATCACCATCGATCCATT 57.249 42.857 0.00 0.00 43.76 3.16
3132 7196 2.731027 CGTGAGTTCGAATCACCATCGA 60.731 50.000 23.19 0.00 46.64 3.59
3133 7197 1.583856 CGTGAGTTCGAATCACCATCG 59.416 52.381 23.19 14.32 43.36 3.84
3134 7198 2.876091 TCGTGAGTTCGAATCACCATC 58.124 47.619 23.19 9.40 43.36 3.51
3135 7199 3.448686 GATCGTGAGTTCGAATCACCAT 58.551 45.455 23.19 19.32 43.36 3.55
3136 7200 2.876091 GATCGTGAGTTCGAATCACCA 58.124 47.619 23.19 16.70 43.36 4.17
3157 7221 2.248431 GTGGACTCGCAACAACGC 59.752 61.111 0.00 0.00 0.00 4.84
3158 7222 1.557443 GAGGTGGACTCGCAACAACG 61.557 60.000 0.00 0.00 36.29 4.10
3159 7223 2.235546 GAGGTGGACTCGCAACAAC 58.764 57.895 0.00 0.00 36.29 3.32
3160 7224 4.771127 GAGGTGGACTCGCAACAA 57.229 55.556 0.00 0.00 36.29 2.83
3167 7231 0.108756 GTGGTTAGCGAGGTGGACTC 60.109 60.000 0.00 0.00 43.02 3.36
3168 7232 0.542232 AGTGGTTAGCGAGGTGGACT 60.542 55.000 0.00 0.00 0.00 3.85
3169 7233 0.320697 AAGTGGTTAGCGAGGTGGAC 59.679 55.000 0.00 0.00 0.00 4.02
3170 7234 0.320374 CAAGTGGTTAGCGAGGTGGA 59.680 55.000 0.00 0.00 0.00 4.02
3171 7235 0.320374 TCAAGTGGTTAGCGAGGTGG 59.680 55.000 0.00 0.00 0.00 4.61
3172 7236 1.429463 GTCAAGTGGTTAGCGAGGTG 58.571 55.000 0.00 0.00 0.00 4.00
3173 7237 0.320697 GGTCAAGTGGTTAGCGAGGT 59.679 55.000 0.00 0.00 0.00 3.85
3174 7238 0.320374 TGGTCAAGTGGTTAGCGAGG 59.680 55.000 0.00 0.00 0.00 4.63
3175 7239 2.163818 TTGGTCAAGTGGTTAGCGAG 57.836 50.000 0.00 0.00 0.00 5.03
3176 7240 2.158871 AGTTTGGTCAAGTGGTTAGCGA 60.159 45.455 0.00 0.00 0.00 4.93
3177 7241 2.218603 AGTTTGGTCAAGTGGTTAGCG 58.781 47.619 0.00 0.00 0.00 4.26
3178 7242 4.820173 AGTTAGTTTGGTCAAGTGGTTAGC 59.180 41.667 0.00 0.00 0.00 3.09
3179 7243 6.937436 AAGTTAGTTTGGTCAAGTGGTTAG 57.063 37.500 0.00 0.00 0.00 2.34
3180 7244 7.114095 AGAAAGTTAGTTTGGTCAAGTGGTTA 58.886 34.615 0.00 0.00 0.00 2.85
3181 7245 5.949952 AGAAAGTTAGTTTGGTCAAGTGGTT 59.050 36.000 0.00 0.00 0.00 3.67
3182 7246 5.506708 AGAAAGTTAGTTTGGTCAAGTGGT 58.493 37.500 0.00 0.00 0.00 4.16
3183 7247 6.451064 AAGAAAGTTAGTTTGGTCAAGTGG 57.549 37.500 0.00 0.00 0.00 4.00
3184 7248 8.290325 GGATAAGAAAGTTAGTTTGGTCAAGTG 58.710 37.037 0.00 0.00 0.00 3.16
3185 7249 7.996644 TGGATAAGAAAGTTAGTTTGGTCAAGT 59.003 33.333 0.00 0.00 0.00 3.16
3186 7250 8.290325 GTGGATAAGAAAGTTAGTTTGGTCAAG 58.710 37.037 0.00 0.00 0.00 3.02
3187 7251 7.996644 AGTGGATAAGAAAGTTAGTTTGGTCAA 59.003 33.333 0.00 0.00 0.00 3.18
3188 7252 7.514721 AGTGGATAAGAAAGTTAGTTTGGTCA 58.485 34.615 0.00 0.00 0.00 4.02
3189 7253 7.981102 AGTGGATAAGAAAGTTAGTTTGGTC 57.019 36.000 0.00 0.00 0.00 4.02
3190 7254 9.503399 CTTAGTGGATAAGAAAGTTAGTTTGGT 57.497 33.333 0.00 0.00 43.17 3.67
3191 7255 9.720769 TCTTAGTGGATAAGAAAGTTAGTTTGG 57.279 33.333 0.00 0.00 45.52 3.28
3203 7267 8.871125 AGAACTGTTTTCTCTTAGTGGATAAGA 58.129 33.333 0.00 0.00 46.16 2.10
3206 7270 9.310449 ACTAGAACTGTTTTCTCTTAGTGGATA 57.690 33.333 0.00 0.00 0.00 2.59
3207 7271 8.196378 ACTAGAACTGTTTTCTCTTAGTGGAT 57.804 34.615 0.00 0.00 0.00 3.41
3208 7272 7.598759 ACTAGAACTGTTTTCTCTTAGTGGA 57.401 36.000 0.00 0.00 0.00 4.02
3209 7273 9.760077 TTAACTAGAACTGTTTTCTCTTAGTGG 57.240 33.333 0.00 0.00 0.00 4.00
3211 7275 9.761504 GGTTAACTAGAACTGTTTTCTCTTAGT 57.238 33.333 5.42 0.00 0.00 2.24
3212 7276 9.760077 TGGTTAACTAGAACTGTTTTCTCTTAG 57.240 33.333 5.42 0.00 0.00 2.18
3214 7278 9.274206 GATGGTTAACTAGAACTGTTTTCTCTT 57.726 33.333 5.42 0.00 0.00 2.85
3215 7279 8.652290 AGATGGTTAACTAGAACTGTTTTCTCT 58.348 33.333 5.42 0.00 0.00 3.10
3216 7280 8.834749 AGATGGTTAACTAGAACTGTTTTCTC 57.165 34.615 5.42 0.00 0.00 2.87
3217 7281 7.599245 CGAGATGGTTAACTAGAACTGTTTTCT 59.401 37.037 5.42 0.00 0.00 2.52
3218 7282 7.621633 GCGAGATGGTTAACTAGAACTGTTTTC 60.622 40.741 5.42 0.00 0.00 2.29
3219 7283 6.147328 GCGAGATGGTTAACTAGAACTGTTTT 59.853 38.462 5.42 0.00 0.00 2.43
3220 7284 5.638234 GCGAGATGGTTAACTAGAACTGTTT 59.362 40.000 5.42 0.00 0.00 2.83
3221 7285 5.169295 GCGAGATGGTTAACTAGAACTGTT 58.831 41.667 5.42 0.00 0.00 3.16
3222 7286 4.674623 CGCGAGATGGTTAACTAGAACTGT 60.675 45.833 0.00 0.00 0.00 3.55
3223 7287 3.791887 CGCGAGATGGTTAACTAGAACTG 59.208 47.826 0.00 0.00 0.00 3.16
3224 7288 3.734293 GCGCGAGATGGTTAACTAGAACT 60.734 47.826 12.10 1.04 0.00 3.01
3225 7289 2.534757 GCGCGAGATGGTTAACTAGAAC 59.465 50.000 12.10 0.00 0.00 3.01
3226 7290 2.164827 TGCGCGAGATGGTTAACTAGAA 59.835 45.455 12.10 0.00 0.00 2.10
3227 7291 1.746787 TGCGCGAGATGGTTAACTAGA 59.253 47.619 12.10 0.00 0.00 2.43
3228 7292 2.120232 CTGCGCGAGATGGTTAACTAG 58.880 52.381 12.10 0.00 0.00 2.57
3229 7293 1.475280 ACTGCGCGAGATGGTTAACTA 59.525 47.619 12.10 0.00 0.00 2.24
3230 7294 0.246635 ACTGCGCGAGATGGTTAACT 59.753 50.000 12.10 0.00 0.00 2.24
3231 7295 1.076332 AACTGCGCGAGATGGTTAAC 58.924 50.000 12.10 0.00 0.00 2.01
3232 7296 2.658373 TAACTGCGCGAGATGGTTAA 57.342 45.000 12.10 0.00 0.00 2.01
3233 7297 2.658373 TTAACTGCGCGAGATGGTTA 57.342 45.000 12.10 7.93 0.00 2.85
3234 7298 1.463444 GTTTAACTGCGCGAGATGGTT 59.537 47.619 12.10 8.95 0.00 3.67
3235 7299 1.076332 GTTTAACTGCGCGAGATGGT 58.924 50.000 12.10 0.00 0.00 3.55
3236 7300 1.075542 TGTTTAACTGCGCGAGATGG 58.924 50.000 12.10 0.00 0.00 3.51
3237 7301 3.389687 AATGTTTAACTGCGCGAGATG 57.610 42.857 12.10 0.00 0.00 2.90
3238 7302 5.734855 ATTAATGTTTAACTGCGCGAGAT 57.265 34.783 12.10 1.59 0.00 2.75
3239 7303 6.838198 ATATTAATGTTTAACTGCGCGAGA 57.162 33.333 12.10 0.00 0.00 4.04
3240 7304 9.671521 GTATATATTAATGTTTAACTGCGCGAG 57.328 33.333 12.10 7.21 0.00 5.03
3241 7305 9.414295 AGTATATATTAATGTTTAACTGCGCGA 57.586 29.630 12.10 0.00 0.00 5.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.