Multiple sequence alignment - TraesCS2B01G367700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G367700 chr2B 100.000 4002 0 0 1 4002 524029695 524025694 0.000000e+00 7391
1 TraesCS2B01G367700 chr2D 95.865 2757 86 11 585 3329 445743446 445740706 0.000000e+00 4434
2 TraesCS2B01G367700 chr2D 89.437 568 44 9 1 555 445744008 445743444 0.000000e+00 702
3 TraesCS2B01G367700 chr2D 84.737 570 41 19 3468 4002 445740704 445740146 2.740000e-146 529
4 TraesCS2B01G367700 chr2D 92.437 119 9 0 3334 3452 586154927 586154809 1.910000e-38 171
5 TraesCS2B01G367700 chr2A 95.175 2342 78 19 1000 3334 588380793 588378480 0.000000e+00 3666
6 TraesCS2B01G367700 chr2A 86.519 994 76 32 1 965 588381761 588380797 0.000000e+00 1040
7 TraesCS2B01G367700 chr2A 90.883 351 21 7 3452 3796 588378478 588378133 1.010000e-125 460
8 TraesCS2B01G367700 chr2A 91.667 120 10 0 3334 3453 747602308 747602427 2.470000e-37 167
9 TraesCS2B01G367700 chr4D 93.277 119 8 0 3334 3452 367720660 367720542 4.110000e-40 176
10 TraesCS2B01G367700 chr4D 91.597 119 10 0 3335 3453 27156537 27156419 8.900000e-37 165
11 TraesCS2B01G367700 chr3A 93.103 116 8 0 3338 3453 272727 272612 1.910000e-38 171
12 TraesCS2B01G367700 chr3A 91.597 119 10 0 3334 3452 108378992 108378874 8.900000e-37 165
13 TraesCS2B01G367700 chr7D 90.000 130 12 1 3333 3461 46717878 46718007 2.470000e-37 167
14 TraesCS2B01G367700 chr1A 88.636 132 14 1 3322 3453 410159148 410159278 4.140000e-35 159
15 TraesCS2B01G367700 chr7A 87.879 132 14 2 3322 3453 126048292 126048421 1.930000e-33 154


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G367700 chr2B 524025694 524029695 4001 True 7391.000000 7391 100.000 1 4002 1 chr2B.!!$R1 4001
1 TraesCS2B01G367700 chr2D 445740146 445744008 3862 True 1888.333333 4434 90.013 1 4002 3 chr2D.!!$R2 4001
2 TraesCS2B01G367700 chr2A 588378133 588381761 3628 True 1722.000000 3666 90.859 1 3796 3 chr2A.!!$R1 3795

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 0.297820 CGTCGCTCGGTCTTAATTGC 59.702 55.0 0.00 0.0 35.71 3.56 F
530 549 0.318955 CTTGTGGGCGGCTTCTTTTG 60.319 55.0 9.56 0.0 0.00 2.44 F
853 885 1.009997 TGGATGGATGGGGCTTCTTT 58.990 50.0 0.00 0.0 0.00 2.52 F
2379 2425 0.252421 ACAGACCATCAGAGAGCCCA 60.252 55.0 0.00 0.0 0.00 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1431 1473 1.970640 CCTTCCCCTGAACCAAAAAGG 59.029 52.381 0.00 0.0 45.67 3.11 R
2248 2294 2.139323 ATAGACGCACCCTGTAGTCA 57.861 50.000 0.00 0.0 36.18 3.41 R
2754 2800 0.249073 ATCGGCTACATGCACGAGTC 60.249 55.000 0.00 0.0 43.51 3.36 R
3450 3497 0.106167 ACGGCCAGCTCTACCAGATA 60.106 55.000 2.24 0.0 0.00 1.98 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.664151 CTCGCCGTTACCAGGATTTTC 59.336 52.381 0.00 0.00 0.00 2.29
33 34 4.815108 AGGATTTTCGCCCCCGCC 62.815 66.667 0.00 0.00 0.00 6.13
81 82 4.856607 GCTCCCTTCCGTCGCTCG 62.857 72.222 0.00 0.00 39.52 5.03
92 93 0.297820 CGTCGCTCGGTCTTAATTGC 59.702 55.000 0.00 0.00 35.71 3.56
97 104 2.735444 CGCTCGGTCTTAATTGCAGAGA 60.735 50.000 0.00 0.00 0.00 3.10
101 108 3.007506 TCGGTCTTAATTGCAGAGAACCA 59.992 43.478 0.00 0.00 0.00 3.67
111 118 1.272147 GCAGAGAACCAGTGGGGATTT 60.272 52.381 15.21 0.00 41.15 2.17
112 119 2.819348 GCAGAGAACCAGTGGGGATTTT 60.819 50.000 15.21 0.00 41.15 1.82
113 120 3.500343 CAGAGAACCAGTGGGGATTTTT 58.500 45.455 15.21 0.00 41.15 1.94
114 121 3.507622 CAGAGAACCAGTGGGGATTTTTC 59.492 47.826 15.21 6.97 41.15 2.29
115 122 2.488153 GAGAACCAGTGGGGATTTTTCG 59.512 50.000 15.21 0.00 41.15 3.46
116 123 2.158519 AGAACCAGTGGGGATTTTTCGT 60.159 45.455 15.21 0.00 41.15 3.85
178 187 1.805945 GGTGAGATGTCGGTGCGTC 60.806 63.158 0.00 0.00 0.00 5.19
180 189 1.073216 GTGAGATGTCGGTGCGTCTG 61.073 60.000 2.86 0.00 35.11 3.51
181 190 1.213013 GAGATGTCGGTGCGTCTGT 59.787 57.895 2.86 0.00 35.11 3.41
293 303 7.680442 AAACAAATTGTAGTTTTGGCTTTGT 57.320 28.000 0.00 0.00 38.18 2.83
295 305 7.680442 ACAAATTGTAGTTTTGGCTTTGTTT 57.320 28.000 0.00 0.00 38.18 2.83
420 435 4.225942 TCTGGATAGATTTGGTTCTGCTGT 59.774 41.667 0.00 0.00 0.00 4.40
530 549 0.318955 CTTGTGGGCGGCTTCTTTTG 60.319 55.000 9.56 0.00 0.00 2.44
557 583 3.810743 GCCATGGTCCACACTAGAGTTTT 60.811 47.826 14.67 0.00 0.00 2.43
580 606 1.872952 TGAAGGTGACAGATTTGCACG 59.127 47.619 0.00 0.00 34.36 5.34
608 634 5.022021 GTCGATTTCCAGATTTTTGCTACG 58.978 41.667 0.00 0.00 0.00 3.51
610 636 5.063438 TCGATTTCCAGATTTTTGCTACGAG 59.937 40.000 0.00 0.00 0.00 4.18
625 655 3.673594 GCTACGAGCATGTAGTGTTCTGT 60.674 47.826 14.49 0.00 43.03 3.41
835 867 7.383572 CCAAAGATCTCGATCCATTAGTTAGTG 59.616 40.741 0.00 0.00 38.58 2.74
836 868 6.582677 AGATCTCGATCCATTAGTTAGTGG 57.417 41.667 3.39 0.00 38.58 4.00
853 885 1.009997 TGGATGGATGGGGCTTCTTT 58.990 50.000 0.00 0.00 0.00 2.52
854 886 1.362237 TGGATGGATGGGGCTTCTTTT 59.638 47.619 0.00 0.00 0.00 2.27
942 974 6.749923 ATTCTTCTGTCAAGGCATAACTTC 57.250 37.500 0.00 0.00 0.00 3.01
1014 1054 1.031571 GCGGAATGAAGGCACCATCA 61.032 55.000 0.00 0.00 0.00 3.07
1148 1188 8.585018 CCCTTCAAAGGTAATACTTGTTTGATT 58.415 33.333 7.96 0.00 44.98 2.57
1178 1218 3.182887 TGAAACCCCAAATGGCTATGT 57.817 42.857 0.00 0.00 0.00 2.29
1208 1249 4.080582 TGTTCAAAGAGGGTCTTCTGAACA 60.081 41.667 24.50 24.50 37.57 3.18
1344 1386 6.662755 TCATGCAAATTCCCTAGTATTCTGT 58.337 36.000 0.00 0.00 0.00 3.41
1346 1388 5.437060 TGCAAATTCCCTAGTATTCTGTCC 58.563 41.667 0.00 0.00 0.00 4.02
1347 1389 5.045213 TGCAAATTCCCTAGTATTCTGTCCA 60.045 40.000 0.00 0.00 0.00 4.02
1527 1569 4.269183 CATGATGGTAAGTTGGCCACTAA 58.731 43.478 3.88 0.00 37.62 2.24
1555 1597 7.572523 TGCAATATTTCCTCCTTTATGAGTG 57.427 36.000 0.00 0.00 0.00 3.51
1601 1643 9.450807 CTTATTCGTCATTGTGTTTCTTTTCTT 57.549 29.630 0.00 0.00 0.00 2.52
1743 1785 8.704668 TCTACAGATTTCATCTAAATGGTGCTA 58.295 33.333 0.00 0.00 37.93 3.49
1763 1805 5.186992 TGCTATGCTTTCTTACTAGGTGTCA 59.813 40.000 0.00 0.00 0.00 3.58
1832 1874 6.715718 GTCTGGTATCCTGCATAAGACTAGTA 59.284 42.308 0.00 0.00 31.91 1.82
1855 1897 8.769359 AGTATTAGGTGCTTAGGTTATTTCAGT 58.231 33.333 0.00 0.00 0.00 3.41
1900 1942 6.596309 TGGGCTTGATATCTATGTACTCAG 57.404 41.667 3.98 0.00 0.00 3.35
1909 1951 4.511786 TCTATGTACTCAGAGGAGCTGT 57.488 45.455 1.53 0.00 45.42 4.40
1942 1984 5.521696 TGTCAACTATGCCTACTACCCTAA 58.478 41.667 0.00 0.00 0.00 2.69
1943 1985 6.141083 TGTCAACTATGCCTACTACCCTAAT 58.859 40.000 0.00 0.00 0.00 1.73
1944 1986 7.299896 TGTCAACTATGCCTACTACCCTAATA 58.700 38.462 0.00 0.00 0.00 0.98
2233 2278 6.115446 CCAAGTGATGTACTGGTGTATTGAT 58.885 40.000 0.00 0.00 40.26 2.57
2248 2294 8.584157 TGGTGTATTGATTTCTTGCTTAAATGT 58.416 29.630 0.00 0.00 0.00 2.71
2249 2295 8.863049 GGTGTATTGATTTCTTGCTTAAATGTG 58.137 33.333 0.00 0.00 0.00 3.21
2262 2308 1.808411 AAATGTGACTACAGGGTGCG 58.192 50.000 0.00 0.00 40.79 5.34
2379 2425 0.252421 ACAGACCATCAGAGAGCCCA 60.252 55.000 0.00 0.00 0.00 5.36
2613 2659 3.415087 GCATGGGAGAGGGCCAGT 61.415 66.667 6.18 0.00 0.00 4.00
2619 2665 1.305718 GGAGAGGGCCAGTGAGACT 60.306 63.158 6.18 0.00 0.00 3.24
2754 2800 5.876460 TCACCTTCTCATGTGTCATATGTTG 59.124 40.000 9.16 4.74 34.14 3.33
2755 2801 5.876460 CACCTTCTCATGTGTCATATGTTGA 59.124 40.000 9.16 6.68 0.00 3.18
2823 2869 6.348622 CCAAGTATTTAACCGTGCATGTTACA 60.349 38.462 4.96 3.11 0.00 2.41
3018 3064 2.556622 AGTAAACCGGCAAATGTTGGAG 59.443 45.455 0.00 0.00 0.00 3.86
3065 3111 5.064198 TGGCCTCGTATACAAAAAGAATTCG 59.936 40.000 3.32 0.00 0.00 3.34
3130 3176 8.336080 GTTCGATTAATTCTTTGGTGATAGGTC 58.664 37.037 0.00 0.00 0.00 3.85
3208 3254 8.521519 TTTGTAGATCTCCTATCTCCTAGGTA 57.478 38.462 9.08 0.00 46.38 3.08
3247 3294 0.886490 CCGAATCTATGGTGCTGGCC 60.886 60.000 0.00 0.00 0.00 5.36
3322 3369 3.994392 GCTTGTCGGTCTTACTTGAATCA 59.006 43.478 0.00 0.00 0.00 2.57
3328 3375 5.289675 GTCGGTCTTACTTGAATCATGTCTG 59.710 44.000 5.00 1.04 0.00 3.51
3334 3381 4.232188 ACTTGAATCATGTCTGGCTGAT 57.768 40.909 0.00 0.00 33.59 2.90
3335 3382 5.363562 ACTTGAATCATGTCTGGCTGATA 57.636 39.130 0.00 0.00 31.95 2.15
3336 3383 5.121811 ACTTGAATCATGTCTGGCTGATAC 58.878 41.667 0.00 0.00 31.95 2.24
3337 3384 5.104610 ACTTGAATCATGTCTGGCTGATACT 60.105 40.000 0.00 0.00 31.95 2.12
3338 3385 4.953667 TGAATCATGTCTGGCTGATACTC 58.046 43.478 0.00 0.00 31.95 2.59
3339 3386 4.202295 TGAATCATGTCTGGCTGATACTCC 60.202 45.833 0.00 0.00 31.95 3.85
3340 3387 2.042464 TCATGTCTGGCTGATACTCCC 58.958 52.381 0.00 0.00 0.00 4.30
3341 3388 2.045524 CATGTCTGGCTGATACTCCCT 58.954 52.381 0.00 0.00 0.00 4.20
3342 3389 1.781786 TGTCTGGCTGATACTCCCTC 58.218 55.000 0.00 0.00 0.00 4.30
3343 3390 1.044611 GTCTGGCTGATACTCCCTCC 58.955 60.000 0.00 0.00 0.00 4.30
3344 3391 0.468214 TCTGGCTGATACTCCCTCCG 60.468 60.000 0.00 0.00 0.00 4.63
3345 3392 0.757188 CTGGCTGATACTCCCTCCGT 60.757 60.000 0.00 0.00 0.00 4.69
3346 3393 0.755698 TGGCTGATACTCCCTCCGTC 60.756 60.000 0.00 0.00 0.00 4.79
3347 3394 0.468400 GGCTGATACTCCCTCCGTCT 60.468 60.000 0.00 0.00 0.00 4.18
3348 3395 0.671251 GCTGATACTCCCTCCGTCTG 59.329 60.000 0.00 0.00 0.00 3.51
3349 3396 1.751032 GCTGATACTCCCTCCGTCTGA 60.751 57.143 0.00 0.00 0.00 3.27
3350 3397 2.656002 CTGATACTCCCTCCGTCTGAA 58.344 52.381 0.00 0.00 0.00 3.02
3351 3398 3.024547 CTGATACTCCCTCCGTCTGAAA 58.975 50.000 0.00 0.00 0.00 2.69
3352 3399 3.437213 TGATACTCCCTCCGTCTGAAAA 58.563 45.455 0.00 0.00 0.00 2.29
3353 3400 3.835978 TGATACTCCCTCCGTCTGAAAAA 59.164 43.478 0.00 0.00 0.00 1.94
3373 3420 4.983671 AAACTTGTCTCAAGTTTGTCCC 57.016 40.909 28.03 0.00 45.58 4.46
3374 3421 3.933861 ACTTGTCTCAAGTTTGTCCCT 57.066 42.857 9.00 0.00 0.00 4.20
3375 3422 4.236527 ACTTGTCTCAAGTTTGTCCCTT 57.763 40.909 9.00 0.00 0.00 3.95
3376 3423 5.367945 ACTTGTCTCAAGTTTGTCCCTTA 57.632 39.130 9.00 0.00 0.00 2.69
3377 3424 5.751586 ACTTGTCTCAAGTTTGTCCCTTAA 58.248 37.500 9.00 0.00 0.00 1.85
3378 3425 6.184789 ACTTGTCTCAAGTTTGTCCCTTAAA 58.815 36.000 9.00 0.00 0.00 1.52
3379 3426 6.833933 ACTTGTCTCAAGTTTGTCCCTTAAAT 59.166 34.615 9.00 0.00 0.00 1.40
3380 3427 6.633500 TGTCTCAAGTTTGTCCCTTAAATG 57.367 37.500 0.00 0.00 0.00 2.32
3381 3428 6.361433 TGTCTCAAGTTTGTCCCTTAAATGA 58.639 36.000 0.00 0.00 0.00 2.57
3382 3429 6.831353 TGTCTCAAGTTTGTCCCTTAAATGAA 59.169 34.615 0.00 0.00 0.00 2.57
3383 3430 7.505585 TGTCTCAAGTTTGTCCCTTAAATGAAT 59.494 33.333 0.00 0.00 0.00 2.57
3384 3431 7.809806 GTCTCAAGTTTGTCCCTTAAATGAATG 59.190 37.037 0.00 0.00 0.00 2.67
3385 3432 7.505585 TCTCAAGTTTGTCCCTTAAATGAATGT 59.494 33.333 0.00 0.00 0.00 2.71
3386 3433 8.698973 TCAAGTTTGTCCCTTAAATGAATGTA 57.301 30.769 0.00 0.00 0.00 2.29
3387 3434 9.308000 TCAAGTTTGTCCCTTAAATGAATGTAT 57.692 29.630 0.00 0.00 0.00 2.29
3388 3435 9.927668 CAAGTTTGTCCCTTAAATGAATGTATT 57.072 29.630 0.00 0.00 0.00 1.89
3393 3440 8.815565 TGTCCCTTAAATGAATGTATTTAGCA 57.184 30.769 0.00 0.00 34.87 3.49
3394 3441 8.682710 TGTCCCTTAAATGAATGTATTTAGCAC 58.317 33.333 0.00 0.00 34.87 4.40
3395 3442 8.903820 GTCCCTTAAATGAATGTATTTAGCACT 58.096 33.333 0.00 0.00 34.87 4.40
3405 3452 8.397906 TGAATGTATTTAGCACTAACTTGATGC 58.602 33.333 0.00 0.00 39.74 3.91
3415 3462 7.721286 GCACTAACTTGATGCTAGATACATT 57.279 36.000 0.00 0.00 36.40 2.71
3416 3463 7.791949 GCACTAACTTGATGCTAGATACATTC 58.208 38.462 0.00 0.00 36.40 2.67
3417 3464 7.439356 GCACTAACTTGATGCTAGATACATTCA 59.561 37.037 0.00 0.00 36.40 2.57
3418 3465 9.486497 CACTAACTTGATGCTAGATACATTCAT 57.514 33.333 0.00 0.00 0.00 2.57
3422 3469 8.969260 ACTTGATGCTAGATACATTCATTTGA 57.031 30.769 0.00 0.00 0.00 2.69
3423 3470 9.053840 ACTTGATGCTAGATACATTCATTTGAG 57.946 33.333 0.00 0.00 0.00 3.02
3424 3471 7.974482 TGATGCTAGATACATTCATTTGAGG 57.026 36.000 0.00 0.00 0.00 3.86
3425 3472 6.938596 TGATGCTAGATACATTCATTTGAGGG 59.061 38.462 0.00 0.00 0.00 4.30
3426 3473 6.499106 TGCTAGATACATTCATTTGAGGGA 57.501 37.500 0.00 0.00 0.00 4.20
3427 3474 6.291377 TGCTAGATACATTCATTTGAGGGAC 58.709 40.000 0.00 0.00 0.00 4.46
3428 3475 6.126796 TGCTAGATACATTCATTTGAGGGACA 60.127 38.462 0.00 0.00 0.00 4.02
3429 3476 6.767902 GCTAGATACATTCATTTGAGGGACAA 59.232 38.462 0.00 0.00 36.65 3.18
3430 3477 7.041508 GCTAGATACATTCATTTGAGGGACAAG 60.042 40.741 0.00 0.00 39.77 3.16
3431 3478 5.591877 AGATACATTCATTTGAGGGACAAGC 59.408 40.000 0.00 0.00 39.77 4.01
3432 3479 3.771216 ACATTCATTTGAGGGACAAGCT 58.229 40.909 0.00 0.00 39.77 3.74
3433 3480 4.154942 ACATTCATTTGAGGGACAAGCTT 58.845 39.130 0.00 0.00 39.77 3.74
3434 3481 4.590222 ACATTCATTTGAGGGACAAGCTTT 59.410 37.500 0.00 0.00 39.77 3.51
3435 3482 5.070847 ACATTCATTTGAGGGACAAGCTTTT 59.929 36.000 0.00 0.00 39.77 2.27
3436 3483 5.612725 TTCATTTGAGGGACAAGCTTTTT 57.387 34.783 0.00 0.00 39.77 1.94
3437 3484 5.200368 TCATTTGAGGGACAAGCTTTTTC 57.800 39.130 0.00 0.00 39.77 2.29
3438 3485 4.648762 TCATTTGAGGGACAAGCTTTTTCA 59.351 37.500 0.00 0.00 39.77 2.69
3439 3486 5.128499 TCATTTGAGGGACAAGCTTTTTCAA 59.872 36.000 0.00 0.00 39.77 2.69
3440 3487 5.413309 TTTGAGGGACAAGCTTTTTCAAA 57.587 34.783 0.00 1.45 39.77 2.69
3441 3488 4.385358 TGAGGGACAAGCTTTTTCAAAC 57.615 40.909 0.00 0.00 0.00 2.93
3442 3489 3.181491 TGAGGGACAAGCTTTTTCAAACG 60.181 43.478 0.00 0.00 0.00 3.60
3443 3490 2.100749 AGGGACAAGCTTTTTCAAACGG 59.899 45.455 0.00 0.00 0.00 4.44
3444 3491 2.100087 GGGACAAGCTTTTTCAAACGGA 59.900 45.455 0.00 0.00 0.00 4.69
3445 3492 3.372060 GGACAAGCTTTTTCAAACGGAG 58.628 45.455 0.00 0.00 0.00 4.63
3446 3493 3.372060 GACAAGCTTTTTCAAACGGAGG 58.628 45.455 0.00 0.00 0.00 4.30
3447 3494 2.100749 ACAAGCTTTTTCAAACGGAGGG 59.899 45.455 0.00 0.00 0.00 4.30
3448 3495 2.358322 AGCTTTTTCAAACGGAGGGA 57.642 45.000 0.00 0.00 0.00 4.20
3449 3496 2.230660 AGCTTTTTCAAACGGAGGGAG 58.769 47.619 0.00 0.00 0.00 4.30
3450 3497 1.954382 GCTTTTTCAAACGGAGGGAGT 59.046 47.619 0.00 0.00 0.00 3.85
3466 3513 1.616374 GGAGTATCTGGTAGAGCTGGC 59.384 57.143 0.00 0.00 33.73 4.85
3495 3542 6.470556 GTCTTTGTTTTGAGAGCTTGTTCTTC 59.529 38.462 0.00 0.00 0.00 2.87
3497 3544 4.526970 TGTTTTGAGAGCTTGTTCTTCCT 58.473 39.130 0.00 0.00 0.00 3.36
3653 3700 2.102588 GGCTACACCATGAATCGGTACT 59.897 50.000 0.00 0.00 38.86 2.73
3684 3731 3.253188 AGTTCATGTCAACAAACCCGATG 59.747 43.478 0.00 0.00 0.00 3.84
3689 3736 1.880027 GTCAACAAACCCGATGCTCTT 59.120 47.619 0.00 0.00 0.00 2.85
3694 3741 3.535561 ACAAACCCGATGCTCTTATGAG 58.464 45.455 1.25 1.25 42.96 2.90
3696 3743 3.914426 AACCCGATGCTCTTATGAGTT 57.086 42.857 7.41 0.00 42.13 3.01
3757 3806 0.743688 TGCGTGTGTTTGCCTTGAAT 59.256 45.000 0.00 0.00 0.00 2.57
3766 3815 5.010922 TGTGTTTGCCTTGAATTCTTGCTAT 59.989 36.000 7.05 0.00 0.00 2.97
3809 3861 8.890718 GGTAATATCTACCCTCACAAACTTTTC 58.109 37.037 3.85 0.00 0.00 2.29
3819 3871 4.350346 TCACAAACTTTTCACTGCAATCG 58.650 39.130 0.00 0.00 0.00 3.34
3820 3872 4.095632 TCACAAACTTTTCACTGCAATCGA 59.904 37.500 0.00 0.00 0.00 3.59
3821 3873 4.797868 CACAAACTTTTCACTGCAATCGAA 59.202 37.500 0.00 0.00 0.00 3.71
3823 3875 5.163663 ACAAACTTTTCACTGCAATCGAAGA 60.164 36.000 0.00 0.00 45.75 2.87
3824 3876 4.739046 ACTTTTCACTGCAATCGAAGAG 57.261 40.909 0.00 7.86 43.63 2.85
3826 3878 4.212214 ACTTTTCACTGCAATCGAAGAGAC 59.788 41.667 13.60 0.00 43.63 3.36
3837 3904 6.595326 TGCAATCGAAGAGACTATTTCAACAT 59.405 34.615 0.00 0.00 43.63 2.71
3838 3905 6.904011 GCAATCGAAGAGACTATTTCAACATG 59.096 38.462 0.00 0.00 43.63 3.21
3843 3910 7.489435 TCGAAGAGACTATTTCAACATGTCATC 59.511 37.037 0.00 0.00 0.00 2.92
3850 3917 5.687770 ATTTCAACATGTCATCGTTGTCA 57.312 34.783 19.02 12.04 42.48 3.58
3852 3919 3.727726 TCAACATGTCATCGTTGTCACT 58.272 40.909 19.02 0.00 42.48 3.41
3865 3946 9.917129 TCATCGTTGTCACTACTTAGAAAATAA 57.083 29.630 0.00 0.00 0.00 1.40
3902 3983 9.804758 AGAGACCTATTAAGACTGAAATTAACG 57.195 33.333 0.00 0.00 0.00 3.18
3941 4023 2.682582 GATCCCTTTAGCGCTGGGGG 62.683 65.000 30.74 29.11 41.22 5.40
3957 4039 0.670239 GGGGCGACATTTGCAAAAGG 60.670 55.000 17.19 13.79 0.00 3.11
3960 4042 2.209273 GGCGACATTTGCAAAAGGTTT 58.791 42.857 17.19 0.00 0.00 3.27
3961 4043 2.611751 GGCGACATTTGCAAAAGGTTTT 59.388 40.909 17.19 0.00 0.00 2.43
3995 4077 6.647334 TTCTTCAAACTCACATGGCAATTA 57.353 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.518068 GCGGGGGCGAAAATCCTG 61.518 66.667 0.00 0.00 0.00 3.86
73 74 0.297820 GCAATTAAGACCGAGCGACG 59.702 55.000 0.00 0.00 42.18 5.12
81 82 4.154918 CACTGGTTCTCTGCAATTAAGACC 59.845 45.833 0.00 0.00 0.00 3.85
82 83 4.154918 CCACTGGTTCTCTGCAATTAAGAC 59.845 45.833 0.00 0.00 0.00 3.01
83 84 4.326826 CCACTGGTTCTCTGCAATTAAGA 58.673 43.478 0.00 0.00 0.00 2.10
84 85 3.441572 CCCACTGGTTCTCTGCAATTAAG 59.558 47.826 0.00 0.00 0.00 1.85
86 87 2.290896 CCCCACTGGTTCTCTGCAATTA 60.291 50.000 0.00 0.00 0.00 1.40
87 88 1.548582 CCCCACTGGTTCTCTGCAATT 60.549 52.381 0.00 0.00 0.00 2.32
88 89 0.038744 CCCCACTGGTTCTCTGCAAT 59.961 55.000 0.00 0.00 0.00 3.56
90 91 0.842030 ATCCCCACTGGTTCTCTGCA 60.842 55.000 0.00 0.00 34.77 4.41
91 92 0.329596 AATCCCCACTGGTTCTCTGC 59.670 55.000 0.00 0.00 34.77 4.26
92 93 2.887151 AAATCCCCACTGGTTCTCTG 57.113 50.000 0.00 0.00 34.77 3.35
97 104 2.158519 AGACGAAAAATCCCCACTGGTT 60.159 45.455 0.00 0.00 34.77 3.67
101 108 3.790089 AGAAGACGAAAAATCCCCACT 57.210 42.857 0.00 0.00 0.00 4.00
111 118 2.794910 CGAGCAACAGAAGAAGACGAAA 59.205 45.455 0.00 0.00 0.00 3.46
112 119 2.223735 ACGAGCAACAGAAGAAGACGAA 60.224 45.455 0.00 0.00 0.00 3.85
113 120 1.337071 ACGAGCAACAGAAGAAGACGA 59.663 47.619 0.00 0.00 0.00 4.20
114 121 1.716581 GACGAGCAACAGAAGAAGACG 59.283 52.381 0.00 0.00 0.00 4.18
115 122 2.983803 GAGACGAGCAACAGAAGAAGAC 59.016 50.000 0.00 0.00 0.00 3.01
116 123 2.350868 CGAGACGAGCAACAGAAGAAGA 60.351 50.000 0.00 0.00 0.00 2.87
178 187 1.336755 CCCGAAACTGAAACCCAACAG 59.663 52.381 0.00 0.00 39.65 3.16
180 189 0.671796 CCCCGAAACTGAAACCCAAC 59.328 55.000 0.00 0.00 0.00 3.77
181 190 0.551879 TCCCCGAAACTGAAACCCAA 59.448 50.000 0.00 0.00 0.00 4.12
230 239 4.278310 TCAGAGAGGTCGTCATCCAATAA 58.722 43.478 0.00 0.00 0.00 1.40
232 241 2.739943 TCAGAGAGGTCGTCATCCAAT 58.260 47.619 0.00 0.00 0.00 3.16
420 435 8.999431 GTCCAGAATTGAGATTTTGTACTACAA 58.001 33.333 0.00 0.00 36.11 2.41
530 549 4.028490 TGTGGACCATGGCGGGAC 62.028 66.667 13.04 4.20 40.22 4.46
557 583 2.143122 GCAAATCTGTCACCTTCACGA 58.857 47.619 0.00 0.00 0.00 4.35
580 606 5.402398 CAAAAATCTGGAAATCGACTTCCC 58.598 41.667 22.05 5.75 43.78 3.97
608 634 2.996621 GTGGACAGAACACTACATGCTC 59.003 50.000 0.00 0.00 35.98 4.26
610 636 2.480419 GTGTGGACAGAACACTACATGC 59.520 50.000 0.00 0.00 43.69 4.06
625 655 0.184933 CCCCAAAAGTCCAGTGTGGA 59.815 55.000 0.00 0.00 45.98 4.02
652 682 3.129287 GTGTGCCACTTCCAAATCCATAG 59.871 47.826 0.00 0.00 0.00 2.23
697 727 3.395941 AGTTTCCACACCTTCCTTCAGAT 59.604 43.478 0.00 0.00 0.00 2.90
705 735 1.338020 CAGCCAAGTTTCCACACCTTC 59.662 52.381 0.00 0.00 0.00 3.46
835 867 2.165357 AAAAGAAGCCCCATCCATCC 57.835 50.000 0.00 0.00 0.00 3.51
1148 1188 5.046735 CCATTTGGGGTTTCATGTATGAACA 60.047 40.000 6.79 0.12 45.63 3.18
1178 1218 7.013274 CAGAAGACCCTCTTTGAACACAAATAA 59.987 37.037 0.00 0.00 36.73 1.40
1344 1386 2.734606 CGACACGAAATTTAGTGCTGGA 59.265 45.455 25.57 0.00 41.72 3.86
1346 1388 3.788434 ACGACACGAAATTTAGTGCTG 57.212 42.857 25.57 20.68 41.72 4.41
1347 1389 4.056050 AGAACGACACGAAATTTAGTGCT 58.944 39.130 25.57 15.55 41.72 4.40
1428 1470 3.406512 TCCCCTGAACCAAAAAGGAAA 57.593 42.857 0.00 0.00 41.22 3.13
1429 1471 3.304829 CTTCCCCTGAACCAAAAAGGAA 58.695 45.455 0.00 0.00 41.22 3.36
1430 1472 2.425683 CCTTCCCCTGAACCAAAAAGGA 60.426 50.000 0.00 0.00 41.22 3.36
1431 1473 1.970640 CCTTCCCCTGAACCAAAAAGG 59.029 52.381 0.00 0.00 45.67 3.11
1432 1474 2.628178 GACCTTCCCCTGAACCAAAAAG 59.372 50.000 0.00 0.00 0.00 2.27
1582 1624 8.837389 ACTACCTAAGAAAAGAAACACAATGAC 58.163 33.333 0.00 0.00 0.00 3.06
1601 1643 7.363031 ACTCTCCCAATATTTGAGACTACCTA 58.637 38.462 9.42 0.00 32.07 3.08
1743 1785 4.532521 ACCTGACACCTAGTAAGAAAGCAT 59.467 41.667 0.00 0.00 29.07 3.79
1763 1805 2.978156 TGGAAGCAAAATCAGGACCT 57.022 45.000 0.00 0.00 0.00 3.85
1832 1874 8.879427 AAACTGAAATAACCTAAGCACCTAAT 57.121 30.769 0.00 0.00 0.00 1.73
1900 1942 4.997395 TGACAGTGAATTTAACAGCTCCTC 59.003 41.667 0.00 0.00 0.00 3.71
1909 1951 8.100791 AGTAGGCATAGTTGACAGTGAATTTAA 58.899 33.333 0.00 0.00 30.96 1.52
1943 1985 9.929180 GTCCTGTATGAAAATATATGACTGCTA 57.071 33.333 0.00 0.00 0.00 3.49
1944 1986 8.654997 AGTCCTGTATGAAAATATATGACTGCT 58.345 33.333 0.00 0.00 0.00 4.24
2233 2278 6.206634 CCCTGTAGTCACATTTAAGCAAGAAA 59.793 38.462 0.00 0.00 33.14 2.52
2248 2294 2.139323 ATAGACGCACCCTGTAGTCA 57.861 50.000 0.00 0.00 36.18 3.41
2249 2295 3.212685 ACTATAGACGCACCCTGTAGTC 58.787 50.000 6.78 0.00 34.78 2.59
2262 2308 5.185249 TGTGTCCTGGAAGTGAACTATAGAC 59.815 44.000 6.78 0.89 0.00 2.59
2379 2425 3.391296 ACAACTGTCTGGATGGTGTAACT 59.609 43.478 0.00 0.00 36.74 2.24
2613 2659 0.900421 CATCTGCTGGGTCAGTCTCA 59.100 55.000 0.00 0.00 35.63 3.27
2619 2665 0.326904 ATCCTCCATCTGCTGGGTCA 60.327 55.000 0.00 0.00 45.98 4.02
2754 2800 0.249073 ATCGGCTACATGCACGAGTC 60.249 55.000 0.00 0.00 43.51 3.36
2755 2801 0.528466 CATCGGCTACATGCACGAGT 60.528 55.000 0.00 0.00 43.51 4.18
3018 3064 2.100418 GGCCAGGATCATCTTTTTCAGC 59.900 50.000 0.00 0.00 0.00 4.26
3065 3111 1.009389 AGCGCTGCGAGTAGACAAAC 61.009 55.000 28.07 3.36 0.00 2.93
3130 3176 2.688507 ACAACTGAGACGCATACTTGG 58.311 47.619 0.00 0.00 0.00 3.61
3208 3254 3.304659 CGGTATGCAAAAGCTCAACAGTT 60.305 43.478 0.00 0.00 0.00 3.16
3247 3294 2.057316 GCTGATAGCGTGCTGTGATAG 58.943 52.381 4.25 0.00 0.00 2.08
3322 3369 2.324541 GAGGGAGTATCAGCCAGACAT 58.675 52.381 0.00 0.00 36.25 3.06
3328 3375 0.468400 AGACGGAGGGAGTATCAGCC 60.468 60.000 0.00 0.00 36.25 4.85
3350 3397 5.480422 AGGGACAAACTTGAGACAAGTTTTT 59.520 36.000 28.20 24.49 45.20 1.94
3351 3398 5.016831 AGGGACAAACTTGAGACAAGTTTT 58.983 37.500 28.20 21.71 45.20 2.43
3353 3400 4.236527 AGGGACAAACTTGAGACAAGTT 57.763 40.909 19.66 19.66 41.82 2.66
3354 3401 3.933861 AGGGACAAACTTGAGACAAGT 57.066 42.857 10.73 10.73 0.00 3.16
3355 3402 6.693315 TTTAAGGGACAAACTTGAGACAAG 57.307 37.500 9.51 9.51 0.00 3.16
3356 3403 6.831353 TCATTTAAGGGACAAACTTGAGACAA 59.169 34.615 0.00 0.00 0.00 3.18
3357 3404 6.361433 TCATTTAAGGGACAAACTTGAGACA 58.639 36.000 0.00 0.00 0.00 3.41
3358 3405 6.877611 TCATTTAAGGGACAAACTTGAGAC 57.122 37.500 0.00 0.00 0.00 3.36
3359 3406 7.505585 ACATTCATTTAAGGGACAAACTTGAGA 59.494 33.333 0.00 0.00 0.00 3.27
3360 3407 7.661040 ACATTCATTTAAGGGACAAACTTGAG 58.339 34.615 0.00 0.00 0.00 3.02
3361 3408 7.595819 ACATTCATTTAAGGGACAAACTTGA 57.404 32.000 0.00 0.00 0.00 3.02
3362 3409 9.927668 AATACATTCATTTAAGGGACAAACTTG 57.072 29.630 0.00 0.00 0.00 3.16
3367 3414 9.249053 TGCTAAATACATTCATTTAAGGGACAA 57.751 29.630 0.00 0.00 31.67 3.18
3368 3415 8.682710 GTGCTAAATACATTCATTTAAGGGACA 58.317 33.333 0.00 0.00 31.67 4.02
3369 3416 8.903820 AGTGCTAAATACATTCATTTAAGGGAC 58.096 33.333 0.00 0.00 31.67 4.46
3379 3426 8.397906 GCATCAAGTTAGTGCTAAATACATTCA 58.602 33.333 4.81 0.00 36.02 2.57
3380 3427 8.616076 AGCATCAAGTTAGTGCTAAATACATTC 58.384 33.333 11.30 0.00 46.54 2.67
3381 3428 8.511604 AGCATCAAGTTAGTGCTAAATACATT 57.488 30.769 11.30 0.00 46.54 2.71
3389 3436 7.582667 TGTATCTAGCATCAAGTTAGTGCTA 57.417 36.000 16.22 16.22 46.54 3.49
3391 3438 7.439356 TGAATGTATCTAGCATCAAGTTAGTGC 59.561 37.037 4.02 4.02 39.10 4.40
3392 3439 8.877808 TGAATGTATCTAGCATCAAGTTAGTG 57.122 34.615 0.00 0.00 33.25 2.74
3396 3443 9.399797 TCAAATGAATGTATCTAGCATCAAGTT 57.600 29.630 0.00 0.00 0.00 2.66
3397 3444 8.969260 TCAAATGAATGTATCTAGCATCAAGT 57.031 30.769 0.00 0.00 0.00 3.16
3398 3445 8.504815 CCTCAAATGAATGTATCTAGCATCAAG 58.495 37.037 0.00 0.00 0.00 3.02
3399 3446 7.446319 CCCTCAAATGAATGTATCTAGCATCAA 59.554 37.037 0.00 0.00 0.00 2.57
3400 3447 6.938596 CCCTCAAATGAATGTATCTAGCATCA 59.061 38.462 0.00 0.00 0.00 3.07
3401 3448 7.118971 GTCCCTCAAATGAATGTATCTAGCATC 59.881 40.741 0.00 0.00 0.00 3.91
3402 3449 6.939163 GTCCCTCAAATGAATGTATCTAGCAT 59.061 38.462 0.00 0.00 0.00 3.79
3403 3450 6.126796 TGTCCCTCAAATGAATGTATCTAGCA 60.127 38.462 0.00 0.00 0.00 3.49
3404 3451 6.291377 TGTCCCTCAAATGAATGTATCTAGC 58.709 40.000 0.00 0.00 0.00 3.42
3405 3452 7.041508 GCTTGTCCCTCAAATGAATGTATCTAG 60.042 40.741 0.00 0.00 35.48 2.43
3406 3453 6.767902 GCTTGTCCCTCAAATGAATGTATCTA 59.232 38.462 0.00 0.00 35.48 1.98
3407 3454 5.591877 GCTTGTCCCTCAAATGAATGTATCT 59.408 40.000 0.00 0.00 35.48 1.98
3408 3455 5.591877 AGCTTGTCCCTCAAATGAATGTATC 59.408 40.000 0.00 0.00 35.48 2.24
3409 3456 5.513233 AGCTTGTCCCTCAAATGAATGTAT 58.487 37.500 0.00 0.00 35.48 2.29
3410 3457 4.922206 AGCTTGTCCCTCAAATGAATGTA 58.078 39.130 0.00 0.00 35.48 2.29
3411 3458 3.771216 AGCTTGTCCCTCAAATGAATGT 58.229 40.909 0.00 0.00 35.48 2.71
3412 3459 4.796038 AAGCTTGTCCCTCAAATGAATG 57.204 40.909 0.00 0.00 35.48 2.67
3413 3460 5.813513 AAAAGCTTGTCCCTCAAATGAAT 57.186 34.783 0.00 0.00 35.48 2.57
3414 3461 5.128499 TGAAAAAGCTTGTCCCTCAAATGAA 59.872 36.000 0.00 0.00 35.48 2.57
3415 3462 4.648762 TGAAAAAGCTTGTCCCTCAAATGA 59.351 37.500 0.00 0.00 35.48 2.57
3416 3463 4.947645 TGAAAAAGCTTGTCCCTCAAATG 58.052 39.130 0.00 0.00 35.48 2.32
3417 3464 5.612725 TTGAAAAAGCTTGTCCCTCAAAT 57.387 34.783 0.00 0.00 35.48 2.32
3418 3465 5.175127 GTTTGAAAAAGCTTGTCCCTCAAA 58.825 37.500 9.85 9.85 35.48 2.69
3419 3466 4.676723 CGTTTGAAAAAGCTTGTCCCTCAA 60.677 41.667 0.00 0.00 34.61 3.02
3420 3467 3.181491 CGTTTGAAAAAGCTTGTCCCTCA 60.181 43.478 0.00 0.00 0.00 3.86
3421 3468 3.372060 CGTTTGAAAAAGCTTGTCCCTC 58.628 45.455 0.00 0.00 0.00 4.30
3422 3469 2.100749 CCGTTTGAAAAAGCTTGTCCCT 59.899 45.455 0.00 0.00 0.00 4.20
3423 3470 2.100087 TCCGTTTGAAAAAGCTTGTCCC 59.900 45.455 0.00 0.00 0.00 4.46
3424 3471 3.372060 CTCCGTTTGAAAAAGCTTGTCC 58.628 45.455 0.00 0.00 0.00 4.02
3425 3472 3.372060 CCTCCGTTTGAAAAAGCTTGTC 58.628 45.455 0.00 1.07 0.00 3.18
3426 3473 2.100749 CCCTCCGTTTGAAAAAGCTTGT 59.899 45.455 0.00 0.00 0.00 3.16
3427 3474 2.360801 TCCCTCCGTTTGAAAAAGCTTG 59.639 45.455 0.00 0.00 0.00 4.01
3428 3475 2.623416 CTCCCTCCGTTTGAAAAAGCTT 59.377 45.455 0.00 0.00 0.00 3.74
3429 3476 2.230660 CTCCCTCCGTTTGAAAAAGCT 58.769 47.619 0.00 0.00 0.00 3.74
3430 3477 1.954382 ACTCCCTCCGTTTGAAAAAGC 59.046 47.619 0.00 0.00 0.00 3.51
3431 3478 5.122396 CAGATACTCCCTCCGTTTGAAAAAG 59.878 44.000 0.00 0.00 0.00 2.27
3432 3479 5.001232 CAGATACTCCCTCCGTTTGAAAAA 58.999 41.667 0.00 0.00 0.00 1.94
3433 3480 4.564821 CCAGATACTCCCTCCGTTTGAAAA 60.565 45.833 0.00 0.00 0.00 2.29
3434 3481 3.055385 CCAGATACTCCCTCCGTTTGAAA 60.055 47.826 0.00 0.00 0.00 2.69
3435 3482 2.500098 CCAGATACTCCCTCCGTTTGAA 59.500 50.000 0.00 0.00 0.00 2.69
3436 3483 2.108168 CCAGATACTCCCTCCGTTTGA 58.892 52.381 0.00 0.00 0.00 2.69
3437 3484 1.831736 ACCAGATACTCCCTCCGTTTG 59.168 52.381 0.00 0.00 0.00 2.93
3438 3485 2.249309 ACCAGATACTCCCTCCGTTT 57.751 50.000 0.00 0.00 0.00 3.60
3439 3486 2.512896 TCTACCAGATACTCCCTCCGTT 59.487 50.000 0.00 0.00 0.00 4.44
3440 3487 2.106857 CTCTACCAGATACTCCCTCCGT 59.893 54.545 0.00 0.00 0.00 4.69
3441 3488 2.785562 CTCTACCAGATACTCCCTCCG 58.214 57.143 0.00 0.00 0.00 4.63
3442 3489 2.109304 AGCTCTACCAGATACTCCCTCC 59.891 54.545 0.00 0.00 0.00 4.30
3443 3490 3.153919 CAGCTCTACCAGATACTCCCTC 58.846 54.545 0.00 0.00 0.00 4.30
3444 3491 2.158385 CCAGCTCTACCAGATACTCCCT 60.158 54.545 0.00 0.00 0.00 4.20
3445 3492 2.243810 CCAGCTCTACCAGATACTCCC 58.756 57.143 0.00 0.00 0.00 4.30
3446 3493 1.616374 GCCAGCTCTACCAGATACTCC 59.384 57.143 0.00 0.00 0.00 3.85
3447 3494 1.616374 GGCCAGCTCTACCAGATACTC 59.384 57.143 0.00 0.00 0.00 2.59
3448 3495 1.710816 GGCCAGCTCTACCAGATACT 58.289 55.000 0.00 0.00 0.00 2.12
3449 3496 0.315568 CGGCCAGCTCTACCAGATAC 59.684 60.000 2.24 0.00 0.00 2.24
3450 3497 0.106167 ACGGCCAGCTCTACCAGATA 60.106 55.000 2.24 0.00 0.00 1.98
3466 3513 2.614057 AGCTCTCAAAACAAAGACACGG 59.386 45.455 0.00 0.00 0.00 4.94
3537 3584 2.040278 TGTTGAGGCTGTGCTTCCTTAT 59.960 45.455 0.00 0.00 33.61 1.73
3643 3690 8.491152 CATGAACTCAAATCATAGTACCGATTC 58.509 37.037 3.92 0.00 35.80 2.52
3653 3700 8.081633 GGTTTGTTGACATGAACTCAAATCATA 58.918 33.333 0.00 0.00 35.80 2.15
3684 3731 8.507249 ACACAAACTCAAATAACTCATAAGAGC 58.493 33.333 0.00 0.00 46.09 4.09
3720 3767 4.805719 CACGCAACACTCACTATCATACAT 59.194 41.667 0.00 0.00 0.00 2.29
3809 3861 5.578336 TGAAATAGTCTCTTCGATTGCAGTG 59.422 40.000 0.00 0.00 0.00 3.66
3819 3871 7.276658 ACGATGACATGTTGAAATAGTCTCTTC 59.723 37.037 0.00 0.00 0.00 2.87
3820 3872 7.099764 ACGATGACATGTTGAAATAGTCTCTT 58.900 34.615 0.00 0.00 0.00 2.85
3821 3873 6.634805 ACGATGACATGTTGAAATAGTCTCT 58.365 36.000 0.00 0.00 0.00 3.10
3823 3875 6.650807 ACAACGATGACATGTTGAAATAGTCT 59.349 34.615 24.80 8.13 46.45 3.24
3824 3876 6.831769 ACAACGATGACATGTTGAAATAGTC 58.168 36.000 24.80 0.00 46.45 2.59
3826 3878 6.738200 GTGACAACGATGACATGTTGAAATAG 59.262 38.462 24.80 8.62 46.45 1.73
3837 3904 5.952526 TCTAAGTAGTGACAACGATGACA 57.047 39.130 0.00 0.00 0.00 3.58
3838 3905 7.633361 TTTTCTAAGTAGTGACAACGATGAC 57.367 36.000 0.00 0.00 0.00 3.06
3843 3910 9.590088 GGTTTTATTTTCTAAGTAGTGACAACG 57.410 33.333 0.00 0.00 0.00 4.10
3941 4023 3.942539 AAAACCTTTTGCAAATGTCGC 57.057 38.095 13.65 0.00 0.00 5.19
3960 4042 7.984050 TGTGAGTTTGAAGAATTTGCCATAAAA 59.016 29.630 0.00 0.00 0.00 1.52
3961 4043 7.495901 TGTGAGTTTGAAGAATTTGCCATAAA 58.504 30.769 0.00 0.00 0.00 1.40
3980 4062 4.789012 CCAAAGTAATTGCCATGTGAGT 57.211 40.909 0.00 0.00 37.73 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.