Multiple sequence alignment - TraesCS2B01G367400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G367400 chr2B 100.000 4797 0 0 1 4797 523765974 523761178 0.000000e+00 8859.0
1 TraesCS2B01G367400 chr2D 92.653 4097 184 42 754 4797 445401004 445396972 0.000000e+00 5790.0
2 TraesCS2B01G367400 chr2A 93.603 3189 141 25 1635 4797 587754539 587751388 0.000000e+00 4700.0
3 TraesCS2B01G367400 chr2A 94.970 2624 108 11 1635 4241 610714411 610711795 0.000000e+00 4093.0
4 TraesCS2B01G367400 chr2A 89.670 910 54 11 754 1652 587755433 587754553 0.000000e+00 1123.0
5 TraesCS2B01G367400 chr2A 86.352 762 50 14 754 1490 610715869 610715137 0.000000e+00 782.0
6 TraesCS2B01G367400 chr2A 87.440 621 37 20 4193 4797 610711798 610711203 0.000000e+00 676.0
7 TraesCS2B01G367400 chr2A 94.706 170 9 0 1483 1652 610714594 610714425 1.020000e-66 265.0
8 TraesCS2B01G367400 chr7B 94.356 567 26 6 1 565 588082972 588082410 0.000000e+00 865.0
9 TraesCS2B01G367400 chr7B 94.000 550 25 8 1 546 719494113 719494658 0.000000e+00 826.0
10 TraesCS2B01G367400 chr7B 91.419 571 40 6 1 568 42872230 42871666 0.000000e+00 774.0
11 TraesCS2B01G367400 chr5B 94.200 569 24 9 1 565 477185218 477185781 0.000000e+00 859.0
12 TraesCS2B01G367400 chr5B 93.134 568 28 9 1 565 693116219 693116778 0.000000e+00 822.0
13 TraesCS2B01G367400 chr5B 90.798 163 15 0 1532 1694 446430535 446430697 8.080000e-53 219.0
14 TraesCS2B01G367400 chr5B 89.571 163 17 0 1532 1694 314297300 314297462 1.750000e-49 207.0
15 TraesCS2B01G367400 chr6B 93.182 572 30 7 1 569 525553224 525553789 0.000000e+00 832.0
16 TraesCS2B01G367400 chr6B 93.490 553 30 6 1 551 129857833 129857285 0.000000e+00 817.0
17 TraesCS2B01G367400 chr3B 93.202 559 30 6 1 554 667720619 667721174 0.000000e+00 815.0
18 TraesCS2B01G367400 chr3B 89.231 65 7 0 1471 1535 558316128 558316064 1.110000e-11 82.4
19 TraesCS2B01G367400 chr4B 91.740 569 38 7 1 565 571338144 571337581 0.000000e+00 782.0
20 TraesCS2B01G367400 chr3D 91.515 165 14 0 1532 1696 340340388 340340224 1.340000e-55 228.0
21 TraesCS2B01G367400 chr6A 88.889 180 19 1 1528 1706 599681840 599681661 2.250000e-53 220.0
22 TraesCS2B01G367400 chr6A 87.324 71 9 0 1465 1535 52485775 52485845 1.110000e-11 82.4
23 TraesCS2B01G367400 chr4D 89.286 168 18 0 1532 1699 145579675 145579508 1.350000e-50 211.0
24 TraesCS2B01G367400 chr6D 88.439 173 20 0 1532 1704 348087768 348087596 4.860000e-50 209.0
25 TraesCS2B01G367400 chr6D 90.476 63 6 0 1465 1527 42152463 42152525 3.080000e-12 84.2
26 TraesCS2B01G367400 chr7D 93.103 58 4 0 1469 1526 500259448 500259391 8.550000e-13 86.1
27 TraesCS2B01G367400 chr5D 86.486 74 7 3 1468 1539 558926345 558926417 1.430000e-10 78.7
28 TraesCS2B01G367400 chr4A 86.301 73 9 1 1471 1542 584143265 584143193 1.430000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G367400 chr2B 523761178 523765974 4796 True 8859.0 8859 100.0000 1 4797 1 chr2B.!!$R1 4796
1 TraesCS2B01G367400 chr2D 445396972 445401004 4032 True 5790.0 5790 92.6530 754 4797 1 chr2D.!!$R1 4043
2 TraesCS2B01G367400 chr2A 587751388 587755433 4045 True 2911.5 4700 91.6365 754 4797 2 chr2A.!!$R1 4043
3 TraesCS2B01G367400 chr2A 610711203 610715869 4666 True 1454.0 4093 90.8670 754 4797 4 chr2A.!!$R2 4043
4 TraesCS2B01G367400 chr7B 588082410 588082972 562 True 865.0 865 94.3560 1 565 1 chr7B.!!$R2 564
5 TraesCS2B01G367400 chr7B 719494113 719494658 545 False 826.0 826 94.0000 1 546 1 chr7B.!!$F1 545
6 TraesCS2B01G367400 chr7B 42871666 42872230 564 True 774.0 774 91.4190 1 568 1 chr7B.!!$R1 567
7 TraesCS2B01G367400 chr5B 477185218 477185781 563 False 859.0 859 94.2000 1 565 1 chr5B.!!$F3 564
8 TraesCS2B01G367400 chr5B 693116219 693116778 559 False 822.0 822 93.1340 1 565 1 chr5B.!!$F4 564
9 TraesCS2B01G367400 chr6B 525553224 525553789 565 False 832.0 832 93.1820 1 569 1 chr6B.!!$F1 568
10 TraesCS2B01G367400 chr6B 129857285 129857833 548 True 817.0 817 93.4900 1 551 1 chr6B.!!$R1 550
11 TraesCS2B01G367400 chr3B 667720619 667721174 555 False 815.0 815 93.2020 1 554 1 chr3B.!!$F1 553
12 TraesCS2B01G367400 chr4B 571337581 571338144 563 True 782.0 782 91.7400 1 565 1 chr4B.!!$R1 564

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
678 696 0.238289 CAACCATGCGTGAACTGACC 59.762 55.0 7.72 0.0 0.0 4.02 F
735 753 0.460284 TTTCTCCGCTTCATCTCGCC 60.460 55.0 0.00 0.0 0.0 5.54 F
1800 2425 0.550914 AGGTTCTTCAGTTGGCCACA 59.449 50.0 3.88 0.0 0.0 4.17 F
3321 3959 0.108329 CACGCCCGGATGAAGTTAGT 60.108 55.0 0.73 0.0 0.0 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 2494 0.757188 ATTTTGTGGACCCGTTGCCA 60.757 50.000 0.0 0.0 0.0 4.92 R
1920 2545 2.650322 TCCTCTTCGCTTTTGGTTTGT 58.350 42.857 0.0 0.0 0.0 2.83 R
3700 4341 0.326595 TTGCGGGTGAATCTGCCTTA 59.673 50.000 0.0 0.0 38.2 2.69 R
4624 5334 0.037232 GCTTCTACAAGACAGCCGGT 60.037 55.000 1.9 0.0 0.0 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 8.832521 AGTTAAAAATTGTTCATCGTACACTGA 58.167 29.630 0.00 0.00 0.00 3.41
110 113 7.850982 GTGTATATTTGAAAATCGCTCATCGTT 59.149 33.333 0.00 0.00 39.67 3.85
341 357 5.180492 TCGCGACCTGAAGAAACAATAAAAT 59.820 36.000 3.71 0.00 0.00 1.82
358 374 9.154632 ACAATAAAATAGGGAAAAGAGGTTTGT 57.845 29.630 0.00 0.00 0.00 2.83
359 375 9.423061 CAATAAAATAGGGAAAAGAGGTTTGTG 57.577 33.333 0.00 0.00 0.00 3.33
370 386 3.356290 AGAGGTTTGTGAACAGCAAGTT 58.644 40.909 0.00 0.00 44.93 2.66
433 450 1.597027 CCAAGTTCGAACCACCGCT 60.597 57.895 24.22 1.90 0.00 5.52
565 583 1.654023 GGCGCCGTTTAGGATTTGCT 61.654 55.000 12.58 0.00 45.00 3.91
568 586 1.737793 CGCCGTTTAGGATTTGCTCTT 59.262 47.619 0.00 0.00 45.00 2.85
569 587 2.161609 CGCCGTTTAGGATTTGCTCTTT 59.838 45.455 0.00 0.00 45.00 2.52
570 588 3.372822 CGCCGTTTAGGATTTGCTCTTTA 59.627 43.478 0.00 0.00 45.00 1.85
571 589 4.142773 CGCCGTTTAGGATTTGCTCTTTAA 60.143 41.667 0.00 0.00 45.00 1.52
572 590 5.448632 CGCCGTTTAGGATTTGCTCTTTAAT 60.449 40.000 0.00 0.00 45.00 1.40
573 591 6.330278 GCCGTTTAGGATTTGCTCTTTAATT 58.670 36.000 0.00 0.00 45.00 1.40
574 592 7.477494 GCCGTTTAGGATTTGCTCTTTAATTA 58.523 34.615 0.00 0.00 45.00 1.40
575 593 7.971722 GCCGTTTAGGATTTGCTCTTTAATTAA 59.028 33.333 0.00 0.00 45.00 1.40
620 638 3.650070 AAAAAGTGCTCCAAGCTTAGC 57.350 42.857 13.32 13.32 42.97 3.09
621 639 2.575805 AAAGTGCTCCAAGCTTAGCT 57.424 45.000 19.35 0.00 42.97 3.32
622 640 2.106477 AAGTGCTCCAAGCTTAGCTC 57.894 50.000 19.35 16.16 42.97 4.09
623 641 0.979665 AGTGCTCCAAGCTTAGCTCA 59.020 50.000 19.35 0.00 42.97 4.26
624 642 1.082690 GTGCTCCAAGCTTAGCTCAC 58.917 55.000 19.35 7.23 42.97 3.51
625 643 0.390340 TGCTCCAAGCTTAGCTCACG 60.390 55.000 19.35 0.00 42.97 4.35
626 644 0.390472 GCTCCAAGCTTAGCTCACGT 60.390 55.000 7.36 0.00 38.25 4.49
627 645 1.135083 GCTCCAAGCTTAGCTCACGTA 60.135 52.381 7.36 0.00 38.25 3.57
628 646 2.531206 CTCCAAGCTTAGCTCACGTAC 58.469 52.381 7.36 0.00 38.25 3.67
629 647 1.890489 TCCAAGCTTAGCTCACGTACA 59.110 47.619 7.36 0.00 38.25 2.90
630 648 2.297880 TCCAAGCTTAGCTCACGTACAA 59.702 45.455 7.36 0.00 38.25 2.41
631 649 2.412089 CCAAGCTTAGCTCACGTACAAC 59.588 50.000 7.36 0.00 38.25 3.32
632 650 2.365408 AGCTTAGCTCACGTACAACC 57.635 50.000 0.00 0.00 30.62 3.77
633 651 1.616865 AGCTTAGCTCACGTACAACCA 59.383 47.619 0.00 0.00 30.62 3.67
634 652 2.233922 AGCTTAGCTCACGTACAACCAT 59.766 45.455 0.00 0.00 30.62 3.55
635 653 2.348666 GCTTAGCTCACGTACAACCATG 59.651 50.000 0.00 0.00 0.00 3.66
636 654 2.004583 TAGCTCACGTACAACCATGC 57.995 50.000 0.00 0.00 0.00 4.06
637 655 1.014044 AGCTCACGTACAACCATGCG 61.014 55.000 0.00 0.00 0.00 4.73
638 656 1.289109 GCTCACGTACAACCATGCGT 61.289 55.000 0.00 0.00 38.14 5.24
639 657 1.144969 CTCACGTACAACCATGCGTT 58.855 50.000 0.00 0.00 35.25 4.84
640 658 1.529438 CTCACGTACAACCATGCGTTT 59.471 47.619 0.00 0.00 35.25 3.60
641 659 1.941294 TCACGTACAACCATGCGTTTT 59.059 42.857 0.00 0.00 35.25 2.43
642 660 2.355132 TCACGTACAACCATGCGTTTTT 59.645 40.909 0.00 0.00 35.25 1.94
664 682 4.669206 TTTTGAGAGGTACGTACAACCA 57.331 40.909 26.02 14.78 39.64 3.67
665 683 4.877378 TTTGAGAGGTACGTACAACCAT 57.123 40.909 26.02 7.82 39.64 3.55
666 684 3.861276 TGAGAGGTACGTACAACCATG 57.139 47.619 26.02 0.00 39.64 3.66
667 685 2.094390 TGAGAGGTACGTACAACCATGC 60.094 50.000 26.02 7.81 39.64 4.06
668 686 1.135199 AGAGGTACGTACAACCATGCG 60.135 52.381 26.02 0.00 39.64 4.73
669 687 0.604578 AGGTACGTACAACCATGCGT 59.395 50.000 26.02 0.00 39.64 5.24
670 688 0.717224 GGTACGTACAACCATGCGTG 59.283 55.000 26.02 0.00 38.10 5.34
671 689 1.669502 GGTACGTACAACCATGCGTGA 60.670 52.381 26.02 0.00 38.10 4.35
672 690 2.060284 GTACGTACAACCATGCGTGAA 58.940 47.619 20.67 0.00 38.10 3.18
673 691 0.863144 ACGTACAACCATGCGTGAAC 59.137 50.000 7.72 0.00 36.16 3.18
674 692 1.144969 CGTACAACCATGCGTGAACT 58.855 50.000 7.72 0.00 0.00 3.01
675 693 1.136363 CGTACAACCATGCGTGAACTG 60.136 52.381 7.72 3.99 0.00 3.16
676 694 2.139917 GTACAACCATGCGTGAACTGA 58.860 47.619 7.72 0.00 0.00 3.41
677 695 0.944386 ACAACCATGCGTGAACTGAC 59.056 50.000 7.72 0.00 0.00 3.51
678 696 0.238289 CAACCATGCGTGAACTGACC 59.762 55.000 7.72 0.00 0.00 4.02
679 697 0.889186 AACCATGCGTGAACTGACCC 60.889 55.000 7.72 0.00 0.00 4.46
680 698 1.302431 CCATGCGTGAACTGACCCA 60.302 57.895 7.72 0.00 0.00 4.51
681 699 0.677731 CCATGCGTGAACTGACCCAT 60.678 55.000 7.72 0.00 0.00 4.00
682 700 1.406751 CCATGCGTGAACTGACCCATA 60.407 52.381 7.72 0.00 0.00 2.74
683 701 1.665679 CATGCGTGAACTGACCCATAC 59.334 52.381 0.00 0.00 0.00 2.39
684 702 0.682292 TGCGTGAACTGACCCATACA 59.318 50.000 0.00 0.00 0.00 2.29
685 703 1.070914 TGCGTGAACTGACCCATACAA 59.929 47.619 0.00 0.00 0.00 2.41
686 704 2.147958 GCGTGAACTGACCCATACAAA 58.852 47.619 0.00 0.00 0.00 2.83
687 705 2.095919 GCGTGAACTGACCCATACAAAC 60.096 50.000 0.00 0.00 0.00 2.93
688 706 2.482721 CGTGAACTGACCCATACAAACC 59.517 50.000 0.00 0.00 0.00 3.27
689 707 3.751518 GTGAACTGACCCATACAAACCT 58.248 45.455 0.00 0.00 0.00 3.50
690 708 3.751698 GTGAACTGACCCATACAAACCTC 59.248 47.826 0.00 0.00 0.00 3.85
691 709 3.244770 TGAACTGACCCATACAAACCTCC 60.245 47.826 0.00 0.00 0.00 4.30
692 710 2.632537 ACTGACCCATACAAACCTCCT 58.367 47.619 0.00 0.00 0.00 3.69
693 711 3.798515 ACTGACCCATACAAACCTCCTA 58.201 45.455 0.00 0.00 0.00 2.94
694 712 3.775316 ACTGACCCATACAAACCTCCTAG 59.225 47.826 0.00 0.00 0.00 3.02
695 713 3.775316 CTGACCCATACAAACCTCCTAGT 59.225 47.826 0.00 0.00 0.00 2.57
696 714 3.773119 TGACCCATACAAACCTCCTAGTC 59.227 47.826 0.00 0.00 0.00 2.59
697 715 3.113043 ACCCATACAAACCTCCTAGTCC 58.887 50.000 0.00 0.00 0.00 3.85
698 716 3.112263 CCCATACAAACCTCCTAGTCCA 58.888 50.000 0.00 0.00 0.00 4.02
699 717 3.134804 CCCATACAAACCTCCTAGTCCAG 59.865 52.174 0.00 0.00 0.00 3.86
700 718 3.775316 CCATACAAACCTCCTAGTCCAGT 59.225 47.826 0.00 0.00 0.00 4.00
701 719 4.383118 CCATACAAACCTCCTAGTCCAGTG 60.383 50.000 0.00 0.00 0.00 3.66
702 720 1.978580 ACAAACCTCCTAGTCCAGTGG 59.021 52.381 1.40 1.40 0.00 4.00
703 721 0.984995 AAACCTCCTAGTCCAGTGGC 59.015 55.000 3.51 0.00 0.00 5.01
704 722 0.910088 AACCTCCTAGTCCAGTGGCC 60.910 60.000 3.51 0.00 0.00 5.36
705 723 2.066999 CCTCCTAGTCCAGTGGCCC 61.067 68.421 3.51 0.00 0.00 5.80
706 724 2.363795 TCCTAGTCCAGTGGCCCG 60.364 66.667 3.51 0.00 0.00 6.13
707 725 2.683933 CCTAGTCCAGTGGCCCGT 60.684 66.667 3.51 0.00 0.00 5.28
708 726 2.722201 CCTAGTCCAGTGGCCCGTC 61.722 68.421 3.51 0.00 0.00 4.79
709 727 2.682494 TAGTCCAGTGGCCCGTCC 60.682 66.667 3.51 0.00 0.00 4.79
719 737 3.785499 GCCCGTCCGCTTCGTTTC 61.785 66.667 0.00 0.00 0.00 2.78
720 738 2.048503 CCCGTCCGCTTCGTTTCT 60.049 61.111 0.00 0.00 0.00 2.52
721 739 2.092882 CCCGTCCGCTTCGTTTCTC 61.093 63.158 0.00 0.00 0.00 2.87
722 740 2.092882 CCGTCCGCTTCGTTTCTCC 61.093 63.158 0.00 0.00 0.00 3.71
723 741 2.434134 CGTCCGCTTCGTTTCTCCG 61.434 63.158 0.00 0.00 0.00 4.63
724 742 2.431942 TCCGCTTCGTTTCTCCGC 60.432 61.111 0.00 0.00 0.00 5.54
725 743 2.432628 CCGCTTCGTTTCTCCGCT 60.433 61.111 0.00 0.00 0.00 5.52
726 744 2.027625 CCGCTTCGTTTCTCCGCTT 61.028 57.895 0.00 0.00 0.00 4.68
727 745 1.416434 CGCTTCGTTTCTCCGCTTC 59.584 57.895 0.00 0.00 0.00 3.86
728 746 1.282248 CGCTTCGTTTCTCCGCTTCA 61.282 55.000 0.00 0.00 0.00 3.02
729 747 1.079503 GCTTCGTTTCTCCGCTTCAT 58.920 50.000 0.00 0.00 0.00 2.57
730 748 1.061276 GCTTCGTTTCTCCGCTTCATC 59.939 52.381 0.00 0.00 0.00 2.92
731 749 2.611518 CTTCGTTTCTCCGCTTCATCT 58.388 47.619 0.00 0.00 0.00 2.90
732 750 2.279582 TCGTTTCTCCGCTTCATCTC 57.720 50.000 0.00 0.00 0.00 2.75
733 751 0.917259 CGTTTCTCCGCTTCATCTCG 59.083 55.000 0.00 0.00 0.00 4.04
734 752 0.647925 GTTTCTCCGCTTCATCTCGC 59.352 55.000 0.00 0.00 0.00 5.03
735 753 0.460284 TTTCTCCGCTTCATCTCGCC 60.460 55.000 0.00 0.00 0.00 5.54
736 754 2.279784 CTCCGCTTCATCTCGCCC 60.280 66.667 0.00 0.00 0.00 6.13
737 755 3.074369 TCCGCTTCATCTCGCCCA 61.074 61.111 0.00 0.00 0.00 5.36
738 756 2.109799 CCGCTTCATCTCGCCCAT 59.890 61.111 0.00 0.00 0.00 4.00
739 757 2.249535 CCGCTTCATCTCGCCCATG 61.250 63.158 0.00 0.00 0.00 3.66
740 758 2.890109 CGCTTCATCTCGCCCATGC 61.890 63.158 0.00 0.00 0.00 4.06
752 770 4.183686 CCATGCGGCAAAGCGGAG 62.184 66.667 6.82 0.00 40.67 4.63
1019 1062 3.844090 GGCCAGCCGACTCCTCTC 61.844 72.222 0.00 0.00 0.00 3.20
1052 1095 4.394712 AAGGAGGTGGCGCTTCCG 62.395 66.667 21.62 0.00 46.85 4.30
1063 1106 2.044946 GCTTCCGGCCTTCACCAT 60.045 61.111 0.00 0.00 34.27 3.55
1073 1116 2.609299 TTCACCATCTCCGCCCCA 60.609 61.111 0.00 0.00 0.00 4.96
1089 1132 4.096003 CATTGCCCCTCGTCCGGT 62.096 66.667 0.00 0.00 0.00 5.28
1127 1170 0.878416 CTTTCCCGCGGAACAATGAA 59.122 50.000 30.73 17.67 41.87 2.57
1158 1201 1.904865 ACCTCCGCCGTAAGACACA 60.905 57.895 0.00 0.00 43.02 3.72
1171 1214 5.220228 CCGTAAGACACAAAATCTGTCGATC 60.220 44.000 0.00 0.00 42.52 3.69
1185 1228 2.472909 CGATCCCTTTCTTGCCCGC 61.473 63.158 0.00 0.00 0.00 6.13
1196 1239 2.838736 TCTTGCCCGCTGATTCTTATC 58.161 47.619 0.00 0.00 0.00 1.75
1199 1242 2.325484 TGCCCGCTGATTCTTATCCTA 58.675 47.619 0.00 0.00 0.00 2.94
1206 1249 5.463724 CCGCTGATTCTTATCCTAAGTTGTC 59.536 44.000 0.00 0.00 0.00 3.18
1214 1257 6.349300 TCTTATCCTAAGTTGTCAATGAGGC 58.651 40.000 5.79 0.00 0.00 4.70
1223 1266 4.040952 AGTTGTCAATGAGGCTTAGTGAGT 59.959 41.667 9.80 0.00 0.00 3.41
1225 1268 3.265791 GTCAATGAGGCTTAGTGAGTGG 58.734 50.000 9.80 0.00 0.00 4.00
1228 1271 3.618690 ATGAGGCTTAGTGAGTGGTTC 57.381 47.619 0.00 0.00 0.00 3.62
1253 1296 2.207229 GGTTTTGGTGACCAGGGCC 61.207 63.158 3.77 4.54 37.14 5.80
1256 1299 2.690653 TTTTGGTGACCAGGGCCTCG 62.691 60.000 0.95 0.00 33.81 4.63
1268 1311 2.985847 GCCTCGGGCTTGTGCTTT 60.986 61.111 7.58 0.00 46.69 3.51
1269 1312 2.956987 CCTCGGGCTTGTGCTTTG 59.043 61.111 0.00 0.00 39.59 2.77
1270 1313 1.600636 CCTCGGGCTTGTGCTTTGA 60.601 57.895 0.00 0.00 39.59 2.69
1271 1314 1.172180 CCTCGGGCTTGTGCTTTGAA 61.172 55.000 0.00 0.00 39.59 2.69
1272 1315 0.667993 CTCGGGCTTGTGCTTTGAAA 59.332 50.000 0.00 0.00 39.59 2.69
1273 1316 1.270550 CTCGGGCTTGTGCTTTGAAAT 59.729 47.619 0.00 0.00 39.59 2.17
1274 1317 2.487762 CTCGGGCTTGTGCTTTGAAATA 59.512 45.455 0.00 0.00 39.59 1.40
1275 1318 3.088532 TCGGGCTTGTGCTTTGAAATAT 58.911 40.909 0.00 0.00 39.59 1.28
1276 1319 3.509575 TCGGGCTTGTGCTTTGAAATATT 59.490 39.130 0.00 0.00 39.59 1.28
1277 1320 3.613737 CGGGCTTGTGCTTTGAAATATTG 59.386 43.478 0.00 0.00 39.59 1.90
1310 1353 2.488153 AGGTTTGCTCCGAAACAATAGC 59.512 45.455 0.00 0.00 37.53 2.97
1340 1383 4.582701 AGTGTTCGATGAAATGCCAAAA 57.417 36.364 0.00 0.00 0.00 2.44
1341 1384 4.942852 AGTGTTCGATGAAATGCCAAAAA 58.057 34.783 0.00 0.00 0.00 1.94
1342 1385 4.984161 AGTGTTCGATGAAATGCCAAAAAG 59.016 37.500 0.00 0.00 0.00 2.27
1343 1386 4.150451 GTGTTCGATGAAATGCCAAAAAGG 59.850 41.667 0.00 0.00 41.84 3.11
1348 1391 4.386652 CGATGAAATGCCAAAAAGGTGAAG 59.613 41.667 0.00 0.00 40.61 3.02
1351 1394 4.081198 TGAAATGCCAAAAAGGTGAAGTGT 60.081 37.500 0.00 0.00 40.61 3.55
1352 1395 3.733443 ATGCCAAAAAGGTGAAGTGTC 57.267 42.857 0.00 0.00 40.61 3.67
1353 1396 2.451490 TGCCAAAAAGGTGAAGTGTCA 58.549 42.857 0.00 0.00 40.61 3.58
1354 1397 2.426738 TGCCAAAAAGGTGAAGTGTCAG 59.573 45.455 0.00 0.00 40.61 3.51
1359 1402 3.731136 GGTGAAGTGTCAGCGCAA 58.269 55.556 11.47 0.00 42.06 4.85
1360 1403 2.247790 GGTGAAGTGTCAGCGCAAT 58.752 52.632 11.47 0.00 42.06 3.56
1361 1404 0.593128 GGTGAAGTGTCAGCGCAATT 59.407 50.000 11.47 0.00 42.06 2.32
1362 1405 1.400242 GGTGAAGTGTCAGCGCAATTC 60.400 52.381 11.47 4.23 42.06 2.17
1363 1406 1.264020 GTGAAGTGTCAGCGCAATTCA 59.736 47.619 11.47 7.26 46.61 2.57
1364 1407 1.264020 TGAAGTGTCAGCGCAATTCAC 59.736 47.619 11.47 13.13 44.83 3.18
1365 1408 1.532868 GAAGTGTCAGCGCAATTCACT 59.467 47.619 11.47 15.22 41.40 3.41
1366 1409 0.870393 AGTGTCAGCGCAATTCACTG 59.130 50.000 20.34 5.63 37.85 3.66
1367 1410 0.727122 GTGTCAGCGCAATTCACTGC 60.727 55.000 11.47 0.00 39.04 4.40
1379 1422 4.738740 GCAATTCACTGCTTTCATCTATGC 59.261 41.667 0.00 0.00 39.34 3.14
1391 1434 5.443185 TTCATCTATGCTATGCTTTTGCC 57.557 39.130 0.00 0.00 46.87 4.52
1511 2104 7.730364 ATTTACTCCGCATATTAGGTTTGAG 57.270 36.000 0.00 0.00 0.00 3.02
1516 2109 3.303132 CCGCATATTAGGTTTGAGCGAAC 60.303 47.826 5.41 0.00 45.78 3.95
1699 2323 7.412020 GCGGAGTAAATAAAAACAGAGAGAGTG 60.412 40.741 0.00 0.00 0.00 3.51
1800 2425 0.550914 AGGTTCTTCAGTTGGCCACA 59.449 50.000 3.88 0.00 0.00 4.17
1826 2451 5.123344 AGTTATAACCTTCAAACATGCCGTC 59.877 40.000 12.05 0.00 0.00 4.79
1842 2467 1.475403 CGTCCTGTCCATACCAGTCT 58.525 55.000 0.00 0.00 0.00 3.24
1850 2475 3.513912 TGTCCATACCAGTCTACCTGTTG 59.486 47.826 0.00 0.00 39.74 3.33
1861 2486 6.369065 CCAGTCTACCTGTTGATAGTCAAAAC 59.631 42.308 0.00 0.00 38.22 2.43
1869 2494 8.109634 ACCTGTTGATAGTCAAAACCAAGATAT 58.890 33.333 0.00 0.00 38.22 1.63
1920 2545 5.299949 CATGGTATCCGTTGATGATTCTGA 58.700 41.667 0.00 0.00 32.18 3.27
1984 2609 4.147479 GCCGTAACAAGGTTTTTGAAATCG 59.853 41.667 0.00 0.00 0.00 3.34
2169 2796 4.458989 AGTTTGCTTGACTTTCACTTGACA 59.541 37.500 0.00 0.00 0.00 3.58
2172 2799 6.691754 TTGCTTGACTTTCACTTGACATAA 57.308 33.333 0.00 0.00 0.00 1.90
2210 2837 3.337358 TGCTGGTCAGTATTGTCATGTG 58.663 45.455 0.00 0.00 0.00 3.21
2314 2941 6.183360 TGCTCTCACATTACGATGAATCTACA 60.183 38.462 0.00 0.00 36.73 2.74
2321 2948 8.820933 CACATTACGATGAATCTACATGTTTCT 58.179 33.333 2.30 0.00 36.73 2.52
2323 2950 9.855361 CATTACGATGAATCTACATGTTTCTTC 57.145 33.333 2.30 8.86 35.16 2.87
2325 2952 7.763172 ACGATGAATCTACATGTTTCTTCTC 57.237 36.000 2.30 0.96 31.66 2.87
2349 2976 8.389779 TCTATGCACTCTGTTGTGAAAATTTA 57.610 30.769 0.00 0.00 40.12 1.40
2662 3289 2.039084 GACATTCACACCAGAGGAGGTT 59.961 50.000 0.00 0.00 40.77 3.50
2899 3537 6.858104 AAAACACGCACAAAAACTAGTAAC 57.142 33.333 0.00 0.00 0.00 2.50
2905 3543 4.271533 CGCACAAAAACTAGTAACAGACCA 59.728 41.667 0.00 0.00 0.00 4.02
2919 3557 3.416156 ACAGACCAGCTTCAAGATTTCC 58.584 45.455 0.00 0.00 0.00 3.13
2923 3561 2.560105 ACCAGCTTCAAGATTTCCAAGC 59.440 45.455 0.00 0.00 41.38 4.01
2928 3566 4.217983 AGCTTCAAGATTTCCAAGCAAGAG 59.782 41.667 5.38 0.00 43.15 2.85
3055 3693 7.400052 AGCCAATTATTTTCAGTTGGTAGGAAT 59.600 33.333 5.06 0.00 42.36 3.01
3179 3817 7.331193 CACTGTCCTGTTATACCTTTTAGTGTC 59.669 40.741 0.00 0.00 0.00 3.67
3183 3821 7.331193 GTCCTGTTATACCTTTTAGTGTCAGTG 59.669 40.741 0.00 0.00 0.00 3.66
3186 3824 4.910458 ATACCTTTTAGTGTCAGTGCCT 57.090 40.909 0.00 0.00 0.00 4.75
3309 3947 1.699656 CTTGAAGATCAGCACGCCCG 61.700 60.000 0.00 0.00 0.00 6.13
3321 3959 0.108329 CACGCCCGGATGAAGTTAGT 60.108 55.000 0.73 0.00 0.00 2.24
3324 3962 1.404986 CGCCCGGATGAAGTTAGTTGA 60.405 52.381 0.73 0.00 0.00 3.18
3346 3987 1.669265 GTTATAGGACAAAGTGCGGCC 59.331 52.381 0.00 0.00 0.00 6.13
3399 4040 2.806244 ACAGTGTGTCCGTGAATAAAGC 59.194 45.455 0.00 0.00 0.00 3.51
3452 4093 5.677319 ATCCGAACTCCTGTCAGAAAATA 57.323 39.130 0.00 0.00 0.00 1.40
3474 4115 7.979786 ATATAGAAAGGTCTGAGAAGTTGGA 57.020 36.000 0.00 0.00 35.12 3.53
3520 4161 6.878317 TGATGATTCAACTTCGGAGTCTATT 58.122 36.000 0.00 0.00 34.21 1.73
3521 4162 6.758416 TGATGATTCAACTTCGGAGTCTATTG 59.242 38.462 0.00 0.00 34.21 1.90
3610 4251 2.969628 AGGAGCGTCCTTTGTATCTG 57.030 50.000 1.23 0.00 46.91 2.90
3904 4545 5.068234 TGAGAAATACTGGTAAGTGGTCG 57.932 43.478 0.00 0.00 37.19 4.79
3964 4606 2.496899 AGAGCATCCACCATTTTCGT 57.503 45.000 0.00 0.00 33.66 3.85
3992 4634 7.627088 GCTTCATTTTCTTACTGCAATCTAGCA 60.627 37.037 0.00 0.00 43.35 3.49
4016 4658 5.588240 AGCTCATGTGATGTTGCATAATTG 58.412 37.500 0.00 0.00 34.91 2.32
4039 4681 5.527214 TGGTAACCTGAAATATCGCAATCAG 59.473 40.000 0.00 0.00 39.16 2.90
4053 4695 2.355756 GCAATCAGATTATGGTGCGTGT 59.644 45.455 0.00 0.00 32.87 4.49
4078 4720 1.863267 TGATTTTGTTTGCTTGGCGG 58.137 45.000 0.00 0.00 0.00 6.13
4106 4748 2.870411 GTTCGTCAGTTGGTGTTAAGCT 59.130 45.455 0.00 0.00 0.00 3.74
4109 4751 2.032894 CGTCAGTTGGTGTTAAGCTGTG 60.033 50.000 0.00 0.00 0.00 3.66
4116 4758 1.614317 GGTGTTAAGCTGTGGCCATCT 60.614 52.381 9.72 3.68 39.73 2.90
4149 4794 7.462109 TGTTGATTTCCTTTTTGTTCATTCG 57.538 32.000 0.00 0.00 0.00 3.34
4155 4800 7.659652 TTTCCTTTTTGTTCATTCGTTGTTT 57.340 28.000 0.00 0.00 0.00 2.83
4173 4818 8.085909 TCGTTGTTTGTAGAAGAGTCATTATCA 58.914 33.333 0.00 0.00 0.00 2.15
4178 4823 7.482169 TTGTAGAAGAGTCATTATCACTGGT 57.518 36.000 0.00 0.00 0.00 4.00
4181 4826 6.365970 AGAAGAGTCATTATCACTGGTTGT 57.634 37.500 0.00 0.00 0.00 3.32
4185 4830 7.004555 AGAGTCATTATCACTGGTTGTTGTA 57.995 36.000 0.00 0.00 0.00 2.41
4186 4831 7.450074 AGAGTCATTATCACTGGTTGTTGTAA 58.550 34.615 0.00 0.00 0.00 2.41
4187 4832 7.604164 AGAGTCATTATCACTGGTTGTTGTAAG 59.396 37.037 0.00 0.00 0.00 2.34
4188 4833 7.224297 AGTCATTATCACTGGTTGTTGTAAGT 58.776 34.615 0.00 0.00 0.00 2.24
4190 4835 5.682943 TTATCACTGGTTGTTGTAAGTGC 57.317 39.130 0.00 0.00 39.88 4.40
4191 4836 2.992593 TCACTGGTTGTTGTAAGTGCA 58.007 42.857 0.00 0.00 39.88 4.57
4277 4968 1.666189 GATCGCCTCTTGTTTACAGGC 59.334 52.381 0.00 0.00 41.84 4.85
4286 4977 3.252215 TCTTGTTTACAGGCGGTTGAATG 59.748 43.478 0.00 0.00 0.00 2.67
4288 4979 3.741249 TGTTTACAGGCGGTTGAATGTA 58.259 40.909 0.00 0.00 0.00 2.29
4289 4980 4.135306 TGTTTACAGGCGGTTGAATGTAA 58.865 39.130 0.00 0.00 36.59 2.41
4290 4981 4.579340 TGTTTACAGGCGGTTGAATGTAAA 59.421 37.500 0.00 5.51 42.66 2.01
4292 4983 5.968528 TTACAGGCGGTTGAATGTAAAAT 57.031 34.783 0.00 0.00 35.72 1.82
4293 4984 4.434713 ACAGGCGGTTGAATGTAAAATC 57.565 40.909 0.00 0.00 0.00 2.17
4294 4985 3.823873 ACAGGCGGTTGAATGTAAAATCA 59.176 39.130 0.00 0.00 0.00 2.57
4295 4986 4.165779 CAGGCGGTTGAATGTAAAATCAC 58.834 43.478 0.00 0.00 0.00 3.06
4297 4988 4.082787 AGGCGGTTGAATGTAAAATCACAG 60.083 41.667 0.00 0.00 0.00 3.66
4298 4989 4.320935 GGCGGTTGAATGTAAAATCACAGT 60.321 41.667 0.00 0.00 0.00 3.55
4299 4990 5.106475 GGCGGTTGAATGTAAAATCACAGTA 60.106 40.000 0.00 0.00 0.00 2.74
4300 4991 6.375377 GCGGTTGAATGTAAAATCACAGTAA 58.625 36.000 0.00 0.00 0.00 2.24
4301 4992 6.858993 GCGGTTGAATGTAAAATCACAGTAAA 59.141 34.615 0.00 0.00 0.00 2.01
4302 4993 7.380065 GCGGTTGAATGTAAAATCACAGTAAAA 59.620 33.333 0.00 0.00 0.00 1.52
4303 4994 9.239002 CGGTTGAATGTAAAATCACAGTAAAAA 57.761 29.630 0.00 0.00 0.00 1.94
4314 5005 9.883142 AAAATCACAGTAAAAATTTGGAAGACA 57.117 25.926 0.00 0.00 0.00 3.41
4315 5006 9.883142 AAATCACAGTAAAAATTTGGAAGACAA 57.117 25.926 0.00 0.00 37.28 3.18
4328 5022 4.023291 TGGAAGACAAAAGCCTCAAAAGT 58.977 39.130 0.00 0.00 0.00 2.66
4335 5029 6.483640 AGACAAAAGCCTCAAAAGTAGTACAG 59.516 38.462 2.52 0.00 0.00 2.74
4336 5030 6.120220 ACAAAAGCCTCAAAAGTAGTACAGT 58.880 36.000 2.52 0.00 0.00 3.55
4337 5031 7.277396 ACAAAAGCCTCAAAAGTAGTACAGTA 58.723 34.615 2.52 0.00 0.00 2.74
4338 5032 7.226128 ACAAAAGCCTCAAAAGTAGTACAGTAC 59.774 37.037 2.05 2.05 0.00 2.73
4339 5033 6.415206 AAGCCTCAAAAGTAGTACAGTACA 57.585 37.500 13.37 0.00 0.00 2.90
4341 5035 6.398918 AGCCTCAAAAGTAGTACAGTACATG 58.601 40.000 13.37 0.00 0.00 3.21
4342 5036 6.014499 AGCCTCAAAAGTAGTACAGTACATGT 60.014 38.462 13.37 2.69 46.45 3.21
4343 5037 6.649557 GCCTCAAAAGTAGTACAGTACATGTT 59.350 38.462 13.37 0.14 39.96 2.71
4345 5039 8.088981 CCTCAAAAGTAGTACAGTACATGTTCT 58.911 37.037 13.37 0.00 39.96 3.01
4346 5040 9.130312 CTCAAAAGTAGTACAGTACATGTTCTC 57.870 37.037 13.37 0.00 39.96 2.87
4347 5041 8.635328 TCAAAAGTAGTACAGTACATGTTCTCA 58.365 33.333 13.37 0.00 39.96 3.27
4349 5043 9.826574 AAAAGTAGTACAGTACATGTTCTCAAA 57.173 29.630 13.37 0.00 39.96 2.69
4350 5044 9.477484 AAAGTAGTACAGTACATGTTCTCAAAG 57.523 33.333 13.37 0.00 39.96 2.77
4360 5054 9.424319 AGTACATGTTCTCAAAGTATTACACTG 57.576 33.333 2.30 0.00 37.63 3.66
4416 5116 1.302366 TCGCCTTGCAGCTTCATATG 58.698 50.000 0.00 0.00 0.00 1.78
4461 5161 2.167075 CACAAAAGGATGGCAGAATCCC 59.833 50.000 2.00 0.00 46.40 3.85
4495 5202 4.995487 TGCATACACACGTATTGGTTTACA 59.005 37.500 0.00 0.00 36.11 2.41
4510 5220 6.944234 TGGTTTACAACATACATCACACAA 57.056 33.333 0.00 0.00 0.00 3.33
4512 5222 7.197017 TGGTTTACAACATACATCACACAAAC 58.803 34.615 0.00 0.00 0.00 2.93
4520 5230 6.220930 ACATACATCACACAAACTACGAACT 58.779 36.000 0.00 0.00 0.00 3.01
4521 5231 7.372714 ACATACATCACACAAACTACGAACTA 58.627 34.615 0.00 0.00 0.00 2.24
4585 5295 1.700600 GGTAGTCCTCGTCGTCGTCC 61.701 65.000 1.33 0.00 38.33 4.79
4624 5334 4.986645 TTCTTGCTCTGGCGCGCA 62.987 61.111 34.42 17.93 42.25 6.09
4645 5355 0.037326 CGGCTGTCTTGTAGAAGCCA 60.037 55.000 19.95 0.00 42.94 4.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
277 288 6.974965 TCCTGCTCTTTTCTCATTTTTCTTC 58.025 36.000 0.00 0.00 0.00 2.87
341 357 5.118729 TGTTCACAAACCTCTTTTCCCTA 57.881 39.130 0.00 0.00 34.28 3.53
359 375 9.530445 CCACTAGGAAAGAACAACTTGCTGTTC 62.530 44.444 8.16 8.16 45.28 3.18
370 386 4.638304 GCAGTTACCACTAGGAAAGAACA 58.362 43.478 0.00 0.00 38.69 3.18
528 546 2.330041 CGTTGCGCCCGTTTCTTT 59.670 55.556 4.18 0.00 0.00 2.52
600 618 3.225940 AGCTAAGCTTGGAGCACTTTTT 58.774 40.909 20.52 0.00 45.56 1.94
601 619 2.816672 GAGCTAAGCTTGGAGCACTTTT 59.183 45.455 20.52 2.37 45.56 2.27
602 620 2.224621 TGAGCTAAGCTTGGAGCACTTT 60.225 45.455 20.52 2.71 45.56 2.66
603 621 1.349026 TGAGCTAAGCTTGGAGCACTT 59.651 47.619 20.52 3.05 45.56 3.16
604 622 0.979665 TGAGCTAAGCTTGGAGCACT 59.020 50.000 20.52 5.78 45.56 4.40
605 623 1.082690 GTGAGCTAAGCTTGGAGCAC 58.917 55.000 20.52 17.98 45.56 4.40
606 624 0.390340 CGTGAGCTAAGCTTGGAGCA 60.390 55.000 20.52 11.43 45.56 4.26
607 625 0.390472 ACGTGAGCTAAGCTTGGAGC 60.390 55.000 14.82 13.52 39.88 4.70
608 626 2.094700 TGTACGTGAGCTAAGCTTGGAG 60.095 50.000 14.82 2.60 39.88 3.86
609 627 1.890489 TGTACGTGAGCTAAGCTTGGA 59.110 47.619 14.82 0.00 39.88 3.53
610 628 2.363788 TGTACGTGAGCTAAGCTTGG 57.636 50.000 9.86 7.48 39.88 3.61
611 629 2.412089 GGTTGTACGTGAGCTAAGCTTG 59.588 50.000 9.86 0.01 39.88 4.01
612 630 2.036733 TGGTTGTACGTGAGCTAAGCTT 59.963 45.455 3.48 3.48 39.88 3.74
613 631 1.616865 TGGTTGTACGTGAGCTAAGCT 59.383 47.619 0.00 0.00 43.88 3.74
614 632 2.074547 TGGTTGTACGTGAGCTAAGC 57.925 50.000 0.00 0.00 0.00 3.09
615 633 2.348666 GCATGGTTGTACGTGAGCTAAG 59.651 50.000 0.00 0.00 0.00 2.18
616 634 2.343101 GCATGGTTGTACGTGAGCTAA 58.657 47.619 0.00 0.00 0.00 3.09
617 635 1.734377 CGCATGGTTGTACGTGAGCTA 60.734 52.381 0.00 0.00 0.00 3.32
618 636 1.014044 CGCATGGTTGTACGTGAGCT 61.014 55.000 0.00 0.00 0.00 4.09
619 637 1.289109 ACGCATGGTTGTACGTGAGC 61.289 55.000 0.00 0.00 37.37 4.26
620 638 1.144969 AACGCATGGTTGTACGTGAG 58.855 50.000 0.00 0.00 39.00 3.51
621 639 1.584175 AAACGCATGGTTGTACGTGA 58.416 45.000 0.00 0.00 39.30 4.35
622 640 2.392933 AAAACGCATGGTTGTACGTG 57.607 45.000 0.00 0.00 39.30 4.49
642 660 5.021033 TGGTTGTACGTACCTCTCAAAAA 57.979 39.130 22.43 5.09 36.60 1.94
643 661 4.669206 TGGTTGTACGTACCTCTCAAAA 57.331 40.909 22.43 5.82 36.60 2.44
644 662 4.562082 CATGGTTGTACGTACCTCTCAAA 58.438 43.478 22.43 6.54 36.60 2.69
645 663 3.615592 GCATGGTTGTACGTACCTCTCAA 60.616 47.826 22.43 7.33 36.60 3.02
646 664 2.094390 GCATGGTTGTACGTACCTCTCA 60.094 50.000 22.43 14.96 36.60 3.27
647 665 2.537401 GCATGGTTGTACGTACCTCTC 58.463 52.381 22.43 10.19 36.60 3.20
648 666 1.135199 CGCATGGTTGTACGTACCTCT 60.135 52.381 22.43 0.00 36.60 3.69
649 667 1.274596 CGCATGGTTGTACGTACCTC 58.725 55.000 22.43 14.52 36.60 3.85
650 668 0.604578 ACGCATGGTTGTACGTACCT 59.395 50.000 22.43 0.11 36.91 3.08
651 669 0.717224 CACGCATGGTTGTACGTACC 59.283 55.000 22.43 11.14 36.91 3.34
652 670 1.700523 TCACGCATGGTTGTACGTAC 58.299 50.000 18.90 18.90 36.91 3.67
653 671 2.060284 GTTCACGCATGGTTGTACGTA 58.940 47.619 0.00 0.00 36.91 3.57
654 672 0.863144 GTTCACGCATGGTTGTACGT 59.137 50.000 0.00 0.00 39.78 3.57
655 673 1.136363 CAGTTCACGCATGGTTGTACG 60.136 52.381 0.00 0.00 0.00 3.67
656 674 2.096417 GTCAGTTCACGCATGGTTGTAC 60.096 50.000 0.00 0.00 0.00 2.90
657 675 2.139917 GTCAGTTCACGCATGGTTGTA 58.860 47.619 0.00 0.00 0.00 2.41
658 676 0.944386 GTCAGTTCACGCATGGTTGT 59.056 50.000 0.00 0.00 0.00 3.32
659 677 0.238289 GGTCAGTTCACGCATGGTTG 59.762 55.000 0.00 0.00 0.00 3.77
660 678 0.889186 GGGTCAGTTCACGCATGGTT 60.889 55.000 0.00 0.00 0.00 3.67
661 679 1.302511 GGGTCAGTTCACGCATGGT 60.303 57.895 0.00 0.00 0.00 3.55
662 680 0.677731 ATGGGTCAGTTCACGCATGG 60.678 55.000 2.64 0.00 45.50 3.66
663 681 1.665679 GTATGGGTCAGTTCACGCATG 59.334 52.381 12.07 0.00 46.36 4.06
665 683 0.682292 TGTATGGGTCAGTTCACGCA 59.318 50.000 0.00 0.00 42.79 5.24
666 684 1.803334 TTGTATGGGTCAGTTCACGC 58.197 50.000 0.00 0.00 0.00 5.34
667 685 2.482721 GGTTTGTATGGGTCAGTTCACG 59.517 50.000 0.00 0.00 0.00 4.35
668 686 3.751518 AGGTTTGTATGGGTCAGTTCAC 58.248 45.455 0.00 0.00 0.00 3.18
669 687 3.244770 GGAGGTTTGTATGGGTCAGTTCA 60.245 47.826 0.00 0.00 0.00 3.18
670 688 3.009143 AGGAGGTTTGTATGGGTCAGTTC 59.991 47.826 0.00 0.00 0.00 3.01
671 689 2.986728 AGGAGGTTTGTATGGGTCAGTT 59.013 45.455 0.00 0.00 0.00 3.16
672 690 2.632537 AGGAGGTTTGTATGGGTCAGT 58.367 47.619 0.00 0.00 0.00 3.41
673 691 3.775316 ACTAGGAGGTTTGTATGGGTCAG 59.225 47.826 0.00 0.00 0.00 3.51
674 692 3.773119 GACTAGGAGGTTTGTATGGGTCA 59.227 47.826 0.00 0.00 0.00 4.02
675 693 3.134262 GGACTAGGAGGTTTGTATGGGTC 59.866 52.174 0.00 0.00 0.00 4.46
676 694 3.113043 GGACTAGGAGGTTTGTATGGGT 58.887 50.000 0.00 0.00 0.00 4.51
677 695 3.112263 TGGACTAGGAGGTTTGTATGGG 58.888 50.000 0.00 0.00 0.00 4.00
678 696 3.775316 ACTGGACTAGGAGGTTTGTATGG 59.225 47.826 0.00 0.00 0.00 2.74
679 697 4.383118 CCACTGGACTAGGAGGTTTGTATG 60.383 50.000 0.00 0.00 0.00 2.39
680 698 3.775316 CCACTGGACTAGGAGGTTTGTAT 59.225 47.826 0.00 0.00 0.00 2.29
681 699 3.170717 CCACTGGACTAGGAGGTTTGTA 58.829 50.000 0.00 0.00 0.00 2.41
682 700 1.978580 CCACTGGACTAGGAGGTTTGT 59.021 52.381 0.00 0.00 0.00 2.83
683 701 1.339151 GCCACTGGACTAGGAGGTTTG 60.339 57.143 0.00 0.00 0.00 2.93
684 702 0.984995 GCCACTGGACTAGGAGGTTT 59.015 55.000 0.00 0.00 0.00 3.27
685 703 0.910088 GGCCACTGGACTAGGAGGTT 60.910 60.000 0.00 0.00 0.00 3.50
686 704 1.306226 GGCCACTGGACTAGGAGGT 60.306 63.158 0.00 0.00 0.00 3.85
687 705 2.066999 GGGCCACTGGACTAGGAGG 61.067 68.421 4.39 0.00 0.00 4.30
688 706 2.427245 CGGGCCACTGGACTAGGAG 61.427 68.421 4.39 0.00 0.00 3.69
689 707 2.363795 CGGGCCACTGGACTAGGA 60.364 66.667 4.39 0.00 0.00 2.94
690 708 2.683933 ACGGGCCACTGGACTAGG 60.684 66.667 4.39 0.00 0.00 3.02
691 709 2.722201 GGACGGGCCACTGGACTAG 61.722 68.421 4.39 0.00 36.34 2.57
692 710 2.682494 GGACGGGCCACTGGACTA 60.682 66.667 4.39 0.00 36.34 2.59
702 720 3.785499 GAAACGAAGCGGACGGGC 61.785 66.667 0.00 0.00 34.93 6.13
703 721 2.048503 AGAAACGAAGCGGACGGG 60.049 61.111 0.00 0.00 34.93 5.28
704 722 2.092882 GGAGAAACGAAGCGGACGG 61.093 63.158 0.00 0.00 34.93 4.79
705 723 2.434134 CGGAGAAACGAAGCGGACG 61.434 63.158 0.00 0.00 35.47 4.79
706 724 2.727684 GCGGAGAAACGAAGCGGAC 61.728 63.158 0.00 0.00 35.47 4.79
707 725 2.430382 AAGCGGAGAAACGAAGCGGA 62.430 55.000 0.00 0.00 35.47 5.54
708 726 1.956620 GAAGCGGAGAAACGAAGCGG 61.957 60.000 0.00 0.00 35.47 5.52
709 727 1.282248 TGAAGCGGAGAAACGAAGCG 61.282 55.000 0.00 0.00 35.47 4.68
710 728 1.061276 GATGAAGCGGAGAAACGAAGC 59.939 52.381 0.00 0.00 35.47 3.86
711 729 2.600867 GAGATGAAGCGGAGAAACGAAG 59.399 50.000 0.00 0.00 35.47 3.79
712 730 2.607187 GAGATGAAGCGGAGAAACGAA 58.393 47.619 0.00 0.00 35.47 3.85
713 731 1.467543 CGAGATGAAGCGGAGAAACGA 60.468 52.381 0.00 0.00 35.47 3.85
714 732 0.917259 CGAGATGAAGCGGAGAAACG 59.083 55.000 0.00 0.00 0.00 3.60
715 733 0.647925 GCGAGATGAAGCGGAGAAAC 59.352 55.000 0.00 0.00 0.00 2.78
716 734 0.460284 GGCGAGATGAAGCGGAGAAA 60.460 55.000 0.00 0.00 0.00 2.52
717 735 1.141881 GGCGAGATGAAGCGGAGAA 59.858 57.895 0.00 0.00 0.00 2.87
718 736 2.786495 GGGCGAGATGAAGCGGAGA 61.786 63.158 0.00 0.00 0.00 3.71
719 737 2.279784 GGGCGAGATGAAGCGGAG 60.280 66.667 0.00 0.00 0.00 4.63
720 738 2.434843 ATGGGCGAGATGAAGCGGA 61.435 57.895 0.00 0.00 0.00 5.54
721 739 2.109799 ATGGGCGAGATGAAGCGG 59.890 61.111 0.00 0.00 0.00 5.52
722 740 2.890109 GCATGGGCGAGATGAAGCG 61.890 63.158 0.00 0.00 0.00 4.68
723 741 3.028969 GCATGGGCGAGATGAAGC 58.971 61.111 0.00 0.00 0.00 3.86
735 753 4.183686 CTCCGCTTTGCCGCATGG 62.184 66.667 0.00 0.00 38.77 3.66
736 754 4.842091 GCTCCGCTTTGCCGCATG 62.842 66.667 0.00 0.00 0.00 4.06
1006 1049 2.826738 GAGCGAGAGGAGTCGGCT 60.827 66.667 0.00 0.00 40.44 5.52
1008 1051 3.578272 CGGAGCGAGAGGAGTCGG 61.578 72.222 0.00 0.00 40.44 4.79
1048 1091 1.602237 GAGATGGTGAAGGCCGGAA 59.398 57.895 5.05 0.00 0.00 4.30
1052 1095 2.514824 GCGGAGATGGTGAAGGCC 60.515 66.667 0.00 0.00 0.00 5.19
1073 1116 2.364579 TACCGGACGAGGGGCAAT 60.365 61.111 9.46 0.00 35.02 3.56
1089 1132 2.330393 GCCGTCGCATCTACGCTA 59.670 61.111 0.00 0.00 39.00 4.26
1109 1152 0.878416 CTTCATTGTTCCGCGGGAAA 59.122 50.000 27.83 9.59 43.86 3.13
1115 1158 0.179179 GCTGAGCTTCATTGTTCCGC 60.179 55.000 0.00 0.00 0.00 5.54
1158 1201 4.156739 GCAAGAAAGGGATCGACAGATTTT 59.843 41.667 0.00 0.00 37.19 1.82
1171 1214 0.967380 AATCAGCGGGCAAGAAAGGG 60.967 55.000 0.00 0.00 0.00 3.95
1185 1228 9.605275 TCATTGACAACTTAGGATAAGAATCAG 57.395 33.333 3.64 0.00 33.41 2.90
1196 1239 5.352569 CACTAAGCCTCATTGACAACTTAGG 59.647 44.000 19.03 13.96 40.41 2.69
1199 1242 4.973168 TCACTAAGCCTCATTGACAACTT 58.027 39.130 0.00 0.00 0.00 2.66
1206 1249 3.340814 ACCACTCACTAAGCCTCATTG 57.659 47.619 0.00 0.00 0.00 2.82
1214 1257 2.164624 CTCCCGAGAACCACTCACTAAG 59.835 54.545 0.00 0.00 45.14 2.18
1223 1266 0.109723 CCAAAACCTCCCGAGAACCA 59.890 55.000 0.00 0.00 0.00 3.67
1225 1268 1.202722 TCACCAAAACCTCCCGAGAAC 60.203 52.381 0.00 0.00 0.00 3.01
1228 1271 0.605589 GGTCACCAAAACCTCCCGAG 60.606 60.000 0.00 0.00 33.78 4.63
1253 1296 0.667993 TTTCAAAGCACAAGCCCGAG 59.332 50.000 0.00 0.00 43.56 4.63
1256 1299 4.819769 TCAATATTTCAAAGCACAAGCCC 58.180 39.130 0.00 0.00 43.56 5.19
1267 1310 8.523915 ACCTACTGCATCAATCAATATTTCAA 57.476 30.769 0.00 0.00 0.00 2.69
1268 1311 8.523915 AACCTACTGCATCAATCAATATTTCA 57.476 30.769 0.00 0.00 0.00 2.69
1269 1312 9.241317 CAAACCTACTGCATCAATCAATATTTC 57.759 33.333 0.00 0.00 0.00 2.17
1270 1313 7.707893 GCAAACCTACTGCATCAATCAATATTT 59.292 33.333 0.00 0.00 39.69 1.40
1271 1314 7.069085 AGCAAACCTACTGCATCAATCAATATT 59.931 33.333 0.00 0.00 42.48 1.28
1272 1315 6.548622 AGCAAACCTACTGCATCAATCAATAT 59.451 34.615 0.00 0.00 42.48 1.28
1273 1316 5.887598 AGCAAACCTACTGCATCAATCAATA 59.112 36.000 0.00 0.00 42.48 1.90
1274 1317 4.708421 AGCAAACCTACTGCATCAATCAAT 59.292 37.500 0.00 0.00 42.48 2.57
1275 1318 4.081406 AGCAAACCTACTGCATCAATCAA 58.919 39.130 0.00 0.00 42.48 2.57
1276 1319 3.689347 AGCAAACCTACTGCATCAATCA 58.311 40.909 0.00 0.00 42.48 2.57
1277 1320 3.065925 GGAGCAAACCTACTGCATCAATC 59.934 47.826 0.00 0.00 42.48 2.67
1310 1353 4.708868 TTCATCGAACACTTCAAAGTCG 57.291 40.909 0.00 0.00 37.08 4.18
1340 1383 0.463654 TTGCGCTGACACTTCACCTT 60.464 50.000 9.73 0.00 0.00 3.50
1341 1384 0.250467 ATTGCGCTGACACTTCACCT 60.250 50.000 9.73 0.00 0.00 4.00
1342 1385 0.593128 AATTGCGCTGACACTTCACC 59.407 50.000 9.73 0.00 0.00 4.02
1343 1386 1.264020 TGAATTGCGCTGACACTTCAC 59.736 47.619 9.73 0.00 35.18 3.18
1356 1399 4.738740 GCATAGATGAAAGCAGTGAATTGC 59.261 41.667 0.00 0.00 44.41 3.56
1357 1400 6.132791 AGCATAGATGAAAGCAGTGAATTG 57.867 37.500 0.00 0.00 0.00 2.32
1358 1401 7.521748 GCATAGCATAGATGAAAGCAGTGAATT 60.522 37.037 0.00 0.00 0.00 2.17
1359 1402 6.072618 GCATAGCATAGATGAAAGCAGTGAAT 60.073 38.462 0.00 0.00 0.00 2.57
1360 1403 5.237996 GCATAGCATAGATGAAAGCAGTGAA 59.762 40.000 0.00 0.00 0.00 3.18
1361 1404 4.753610 GCATAGCATAGATGAAAGCAGTGA 59.246 41.667 0.00 0.00 0.00 3.41
1362 1405 4.755629 AGCATAGCATAGATGAAAGCAGTG 59.244 41.667 0.00 0.00 0.00 3.66
1363 1406 4.970711 AGCATAGCATAGATGAAAGCAGT 58.029 39.130 0.00 0.00 0.00 4.40
1364 1407 5.943706 AAGCATAGCATAGATGAAAGCAG 57.056 39.130 0.00 0.00 0.00 4.24
1365 1408 6.500910 CAAAAGCATAGCATAGATGAAAGCA 58.499 36.000 0.00 0.00 0.00 3.91
1366 1409 5.401674 GCAAAAGCATAGCATAGATGAAAGC 59.598 40.000 0.00 0.00 0.00 3.51
1367 1410 5.919141 GGCAAAAGCATAGCATAGATGAAAG 59.081 40.000 0.00 0.00 0.00 2.62
1379 1422 6.705825 ACTAAACCAAAAAGGCAAAAGCATAG 59.294 34.615 0.00 0.00 43.14 2.23
1391 1434 8.591312 CACACACAAATACACTAAACCAAAAAG 58.409 33.333 0.00 0.00 0.00 2.27
1511 2104 8.280497 TGTAAATTCTCTAAAGTTTGAGTTCGC 58.720 33.333 0.00 0.00 32.91 4.70
1769 2394 2.223971 TGAAGAACCTGTCGTCTTGGTC 60.224 50.000 0.00 0.00 35.90 4.02
1800 2425 6.015772 ACGGCATGTTTGAAGGTTATAACTTT 60.016 34.615 12.35 12.35 0.00 2.66
1826 2451 2.695666 CAGGTAGACTGGTATGGACAGG 59.304 54.545 0.00 0.00 43.70 4.00
1842 2467 6.833041 TCTTGGTTTTGACTATCAACAGGTA 58.167 36.000 0.00 0.00 35.89 3.08
1869 2494 0.757188 ATTTTGTGGACCCGTTGCCA 60.757 50.000 0.00 0.00 0.00 4.92
1920 2545 2.650322 TCCTCTTCGCTTTTGGTTTGT 58.350 42.857 0.00 0.00 0.00 2.83
1984 2609 4.832823 TCCCTTTCCTTTTTCCATCTCAAC 59.167 41.667 0.00 0.00 0.00 3.18
2100 2725 7.312657 TCTGACACAGATCATTCTTTTATGC 57.687 36.000 0.00 0.00 35.39 3.14
2169 2796 9.632638 ACCAGCAGTATTAGAAAATCATGTTAT 57.367 29.630 0.00 0.00 0.00 1.89
2172 2799 7.112122 TGACCAGCAGTATTAGAAAATCATGT 58.888 34.615 0.00 0.00 0.00 3.21
2210 2837 7.736447 AATTCAGCTTGCAGTAATATACCTC 57.264 36.000 0.00 0.00 0.00 3.85
2282 2909 4.565022 TCGTAATGTGAGAGCAACATCAA 58.435 39.130 0.00 0.00 0.00 2.57
2314 2941 6.047511 ACAGAGTGCATAGAGAAGAAACAT 57.952 37.500 0.00 0.00 0.00 2.71
2321 2948 4.871933 TCACAACAGAGTGCATAGAGAA 57.128 40.909 0.00 0.00 39.35 2.87
2323 2950 5.929697 TTTTCACAACAGAGTGCATAGAG 57.070 39.130 0.00 0.00 39.35 2.43
2325 2952 8.292448 AGTAAATTTTCACAACAGAGTGCATAG 58.708 33.333 0.00 0.00 39.35 2.23
2393 3020 3.926616 TCCTTCGAGCCTTTAAGTGAAG 58.073 45.455 0.00 0.00 34.17 3.02
2662 3289 5.186198 GCTAACTCTGAGGCAATTTCCTTA 58.814 41.667 9.85 0.00 36.38 2.69
2687 3314 5.179452 AGCACAATACCACCACTTAGAAT 57.821 39.130 0.00 0.00 0.00 2.40
2749 3376 2.295909 TGGTGGCTGTGCATAGTTTTTC 59.704 45.455 12.41 0.00 0.00 2.29
2899 3537 3.415212 TGGAAATCTTGAAGCTGGTCTG 58.585 45.455 0.00 0.00 0.00 3.51
2905 3543 4.147321 TCTTGCTTGGAAATCTTGAAGCT 58.853 39.130 0.00 0.00 41.19 3.74
2919 3557 4.564041 TCTTACTGAGCTTCTCTTGCTTG 58.436 43.478 0.00 0.00 41.30 4.01
2923 3561 5.451798 GGAGGATCTTACTGAGCTTCTCTTG 60.452 48.000 0.00 0.00 37.35 3.02
2928 3566 3.957497 TCAGGAGGATCTTACTGAGCTTC 59.043 47.826 15.53 0.00 36.60 3.86
3055 3693 5.330233 TCCTGACTAGAATACAGAACACCA 58.670 41.667 0.00 0.00 34.07 4.17
3116 3754 5.700722 TTATTCATTCTCATCCTGCATGC 57.299 39.130 11.82 11.82 31.70 4.06
3152 3790 7.159372 CACTAAAAGGTATAACAGGACAGTGT 58.841 38.462 0.00 0.00 0.00 3.55
3179 3817 4.699257 AGATTTAGAGAAAGCAAGGCACTG 59.301 41.667 0.00 0.00 40.86 3.66
3183 3821 4.878397 TGCTAGATTTAGAGAAAGCAAGGC 59.122 41.667 0.00 0.00 33.23 4.35
3186 3824 8.798859 AGAAATGCTAGATTTAGAGAAAGCAA 57.201 30.769 0.00 0.00 33.23 3.91
3296 3934 2.923426 TTCATCCGGGCGTGCTGATC 62.923 60.000 0.00 0.00 0.00 2.92
3309 3947 9.315525 GTCCTATAACTTCAACTAACTTCATCC 57.684 37.037 0.00 0.00 0.00 3.51
3321 3959 4.693566 CCGCACTTTGTCCTATAACTTCAA 59.306 41.667 0.00 0.00 0.00 2.69
3324 3962 3.007635 GCCGCACTTTGTCCTATAACTT 58.992 45.455 0.00 0.00 0.00 2.66
3346 3987 8.807667 AGTCTGAAATAAAAGCAATGTCTTTG 57.192 30.769 4.06 0.00 36.49 2.77
3399 4040 5.777802 TCTTGTGAACTGAGCTAGAAGAAG 58.222 41.667 0.00 0.00 0.00 2.85
3416 4057 4.810790 AGTTCGGATACAGTTCTCTTGTG 58.189 43.478 0.00 0.00 0.00 3.33
3452 4093 5.188751 CCTCCAACTTCTCAGACCTTTCTAT 59.811 44.000 0.00 0.00 0.00 1.98
3474 4115 6.487828 TCATCAACCTCAGAATTTTCATCCT 58.512 36.000 0.00 0.00 0.00 3.24
3520 4161 4.529769 AGATCCTCGGATTCTGAATATGCA 59.470 41.667 2.28 0.00 34.60 3.96
3521 4162 5.083533 AGATCCTCGGATTCTGAATATGC 57.916 43.478 2.28 0.00 34.60 3.14
3610 4251 4.263112 GGGAGAAACTTATCCAGCCTATCC 60.263 50.000 5.53 0.00 40.30 2.59
3641 4282 6.092122 TCAAAATCGTCTGCTTCGTTATCATT 59.908 34.615 0.00 0.00 0.00 2.57
3642 4283 5.580691 TCAAAATCGTCTGCTTCGTTATCAT 59.419 36.000 0.00 0.00 0.00 2.45
3643 4284 4.926832 TCAAAATCGTCTGCTTCGTTATCA 59.073 37.500 0.00 0.00 0.00 2.15
3649 4290 2.337583 TCCTCAAAATCGTCTGCTTCG 58.662 47.619 0.00 0.00 0.00 3.79
3653 4294 1.442769 TGCTCCTCAAAATCGTCTGC 58.557 50.000 0.00 0.00 0.00 4.26
3694 4335 3.432186 CGGGTGAATCTGCCTTATCAGAA 60.432 47.826 0.00 0.00 45.17 3.02
3700 4341 0.326595 TTGCGGGTGAATCTGCCTTA 59.673 50.000 0.00 0.00 38.20 2.69
3964 4606 5.477984 AGATTGCAGTAAGAAAATGAAGCCA 59.522 36.000 0.00 0.00 0.00 4.75
3992 4634 5.847111 ATTATGCAACATCACATGAGCTT 57.153 34.783 0.00 0.00 36.39 3.74
4016 4658 5.758296 TCTGATTGCGATATTTCAGGTTACC 59.242 40.000 0.00 0.00 36.95 2.85
4039 4681 5.478233 TCATGTAAACACGCACCATAATC 57.522 39.130 0.00 0.00 0.00 1.75
4053 4695 5.050499 CGCCAAGCAAACAAAATCATGTAAA 60.050 36.000 0.00 0.00 32.02 2.01
4078 4720 0.238289 CCAACTGACGAACCACATGC 59.762 55.000 0.00 0.00 0.00 4.06
4106 4748 4.568072 ACAAGTACATAAGATGGCCACA 57.432 40.909 8.16 0.00 33.60 4.17
4109 4751 6.699575 AATCAACAAGTACATAAGATGGCC 57.300 37.500 0.00 0.00 33.60 5.36
4149 4794 9.209175 AGTGATAATGACTCTTCTACAAACAAC 57.791 33.333 0.00 0.00 0.00 3.32
4155 4800 7.039011 ACAACCAGTGATAATGACTCTTCTACA 60.039 37.037 0.00 0.00 0.00 2.74
4173 4818 3.550820 TCATGCACTTACAACAACCAGT 58.449 40.909 0.00 0.00 0.00 4.00
4178 4823 6.875948 ACTGTAATCATGCACTTACAACAA 57.124 33.333 15.28 0.00 37.38 2.83
4181 4826 7.158697 ACAGTACTGTAATCATGCACTTACAA 58.841 34.615 26.91 4.03 42.90 2.41
4277 4968 8.789881 TTTTACTGTGATTTTACATTCAACCG 57.210 30.769 0.00 0.00 0.00 4.44
4288 4979 9.883142 TGTCTTCCAAATTTTTACTGTGATTTT 57.117 25.926 0.00 0.00 0.00 1.82
4289 4980 9.883142 TTGTCTTCCAAATTTTTACTGTGATTT 57.117 25.926 0.00 0.00 0.00 2.17
4290 4981 9.883142 TTTGTCTTCCAAATTTTTACTGTGATT 57.117 25.926 0.00 0.00 38.12 2.57
4292 4983 9.364989 CTTTTGTCTTCCAAATTTTTACTGTGA 57.635 29.630 0.00 0.00 42.45 3.58
4293 4984 8.116136 GCTTTTGTCTTCCAAATTTTTACTGTG 58.884 33.333 0.00 0.00 42.45 3.66
4294 4985 7.279981 GGCTTTTGTCTTCCAAATTTTTACTGT 59.720 33.333 0.00 0.00 42.45 3.55
4295 4986 7.495606 AGGCTTTTGTCTTCCAAATTTTTACTG 59.504 33.333 0.00 0.00 42.45 2.74
4297 4988 7.494298 TGAGGCTTTTGTCTTCCAAATTTTTAC 59.506 33.333 0.00 0.00 42.45 2.01
4298 4989 7.560368 TGAGGCTTTTGTCTTCCAAATTTTTA 58.440 30.769 0.00 0.00 42.45 1.52
4299 4990 6.413892 TGAGGCTTTTGTCTTCCAAATTTTT 58.586 32.000 0.00 0.00 42.45 1.94
4300 4991 5.988287 TGAGGCTTTTGTCTTCCAAATTTT 58.012 33.333 0.00 0.00 42.45 1.82
4301 4992 5.612725 TGAGGCTTTTGTCTTCCAAATTT 57.387 34.783 0.00 0.00 42.45 1.82
4302 4993 5.612725 TTGAGGCTTTTGTCTTCCAAATT 57.387 34.783 0.00 0.00 42.45 1.82
4303 4994 5.612725 TTTGAGGCTTTTGTCTTCCAAAT 57.387 34.783 0.00 0.00 42.45 2.32
4304 4995 5.046663 ACTTTTGAGGCTTTTGTCTTCCAAA 60.047 36.000 0.00 0.00 41.25 3.28
4305 4996 4.466015 ACTTTTGAGGCTTTTGTCTTCCAA 59.534 37.500 0.00 0.00 32.51 3.53
4306 4997 4.023291 ACTTTTGAGGCTTTTGTCTTCCA 58.977 39.130 0.00 0.00 32.51 3.53
4307 4998 4.655762 ACTTTTGAGGCTTTTGTCTTCC 57.344 40.909 0.00 0.00 32.51 3.46
4308 4999 6.378710 ACTACTTTTGAGGCTTTTGTCTTC 57.621 37.500 0.00 0.00 32.51 2.87
4309 5000 6.826741 TGTACTACTTTTGAGGCTTTTGTCTT 59.173 34.615 0.00 0.00 32.51 3.01
4310 5001 6.354130 TGTACTACTTTTGAGGCTTTTGTCT 58.646 36.000 0.00 0.00 36.89 3.41
4311 5002 6.260271 ACTGTACTACTTTTGAGGCTTTTGTC 59.740 38.462 0.00 0.00 0.00 3.18
4312 5003 6.120220 ACTGTACTACTTTTGAGGCTTTTGT 58.880 36.000 0.00 0.00 0.00 2.83
4313 5004 6.619801 ACTGTACTACTTTTGAGGCTTTTG 57.380 37.500 0.00 0.00 0.00 2.44
4314 5005 7.277396 TGTACTGTACTACTTTTGAGGCTTTT 58.723 34.615 17.98 0.00 0.00 2.27
4315 5006 6.823497 TGTACTGTACTACTTTTGAGGCTTT 58.177 36.000 17.98 0.00 0.00 3.51
4318 5009 6.164176 ACATGTACTGTACTACTTTTGAGGC 58.836 40.000 17.98 0.00 35.91 4.70
4322 5016 8.812147 TGAGAACATGTACTGTACTACTTTTG 57.188 34.615 17.98 8.92 36.98 2.44
4335 5029 9.419297 TCAGTGTAATACTTTGAGAACATGTAC 57.581 33.333 0.00 0.00 37.60 2.90
4349 5043 9.959721 AACAAGATGGTTTATCAGTGTAATACT 57.040 29.630 0.00 0.00 41.36 2.12
4389 5084 1.745115 CTGCAAGGCGATTCGGGAA 60.745 57.895 8.34 0.00 0.00 3.97
4390 5085 2.125147 CTGCAAGGCGATTCGGGA 60.125 61.111 8.34 0.00 0.00 5.14
4416 5116 0.947180 TCGCTTAGTTGCCGTGGAAC 60.947 55.000 0.00 1.07 0.00 3.62
4447 5147 0.749049 GCAAAGGGATTCTGCCATCC 59.251 55.000 0.00 0.00 42.09 3.51
4495 5202 6.704493 AGTTCGTAGTTTGTGTGATGTATGTT 59.296 34.615 0.00 0.00 0.00 2.71
4536 5246 5.667539 TCCCGATCTTGGATGAGATATTC 57.332 43.478 0.00 0.00 36.54 1.75
4537 5247 5.567623 CGTTCCCGATCTTGGATGAGATATT 60.568 44.000 2.06 0.00 36.54 1.28
4585 5295 3.672295 GAAGGTGGAGCTGCCCGAG 62.672 68.421 1.53 0.00 34.97 4.63
4601 5311 1.672356 GCCAGAGCAAGAAGGCGAA 60.672 57.895 0.00 0.00 37.41 4.70
4624 5334 0.037232 GCTTCTACAAGACAGCCGGT 60.037 55.000 1.90 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.