Multiple sequence alignment - TraesCS2B01G366800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G366800 chr2B 100.000 3853 0 0 451 4303 523081777 523085629 0.000000e+00 7116
1 TraesCS2B01G366800 chr2B 84.211 342 46 7 472 809 141387001 141387338 4.150000e-85 326
2 TraesCS2B01G366800 chr2B 82.353 340 57 3 472 809 2459009 2458671 4.210000e-75 292
3 TraesCS2B01G366800 chr2B 100.000 101 0 0 1 101 523081327 523081427 2.040000e-43 187
4 TraesCS2B01G366800 chr2A 96.050 3519 102 16 808 4303 587271241 587274745 0.000000e+00 5694
5 TraesCS2B01G366800 chr2D 97.535 3205 78 1 1100 4303 444759481 444762685 0.000000e+00 5480
6 TraesCS2B01G366800 chr5A 83.481 339 52 4 473 809 675297450 675297114 3.230000e-81 313
7 TraesCS2B01G366800 chr5B 83.186 339 54 3 473 809 322857256 322857593 1.500000e-79 307
8 TraesCS2B01G366800 chr5B 82.059 340 58 3 472 809 109114941 109115279 1.960000e-73 287
9 TraesCS2B01G366800 chr4D 83.234 334 54 2 472 804 475317096 475317428 5.410000e-79 305
10 TraesCS2B01G366800 chr7B 82.301 339 57 3 473 809 711845508 711845845 1.510000e-74 291
11 TraesCS2B01G366800 chr3D 82.111 341 59 2 473 812 589582512 589582173 1.510000e-74 291
12 TraesCS2B01G366800 chr1D 82.249 338 58 2 473 809 425115761 425115425 1.510000e-74 291


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G366800 chr2B 523081327 523085629 4302 False 3651.5 7116 100.000 1 4303 2 chr2B.!!$F2 4302
1 TraesCS2B01G366800 chr2A 587271241 587274745 3504 False 5694.0 5694 96.050 808 4303 1 chr2A.!!$F1 3495
2 TraesCS2B01G366800 chr2D 444759481 444762685 3204 False 5480.0 5480 97.535 1100 4303 1 chr2D.!!$F1 3203

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
571 572 0.035152 CCCTAATGTGCAGTGCCTGA 60.035 55.0 13.72 0.0 32.44 3.86 F
793 794 0.106918 ACTTTCACACGGAGGGCAAA 60.107 50.0 0.00 0.0 0.00 3.68 F
798 799 0.673437 CACACGGAGGGCAAATTTGT 59.327 50.0 19.03 0.0 0.00 2.83 F
2789 2800 0.723981 GCTGGTTCGAAGTCATCTGC 59.276 55.0 0.00 0.0 0.00 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2376 2387 0.396435 CTACAGCCACCACAGAACCA 59.604 55.000 0.00 0.0 0.00 3.67 R
2767 2778 1.079503 GATGACTTCGAACCAGCACC 58.920 55.000 0.00 0.0 0.00 5.01 R
2791 2802 2.735663 CTGCTGAAGCTGTGAACTGTAG 59.264 50.000 3.61 0.0 42.66 2.74 R
4202 4226 4.083110 TGAAGCAAAAGCTGATGTCTAAGC 60.083 41.667 0.00 0.0 39.82 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.889427 CGAGCACCATCGTCAAGA 57.111 55.556 0.00 0.00 37.91 3.02
18 19 2.363807 CGAGCACCATCGTCAAGAC 58.636 57.895 0.00 0.00 37.91 3.01
19 20 0.109086 CGAGCACCATCGTCAAGACT 60.109 55.000 0.00 0.00 37.91 3.24
20 21 1.132453 CGAGCACCATCGTCAAGACTA 59.868 52.381 0.00 0.00 37.91 2.59
21 22 2.531206 GAGCACCATCGTCAAGACTAC 58.469 52.381 0.00 0.00 0.00 2.73
22 23 1.135373 AGCACCATCGTCAAGACTACG 60.135 52.381 0.00 0.00 41.64 3.51
33 34 7.273188 TCGTCAAGACTACGACAAAATATTG 57.727 36.000 0.00 0.00 43.90 1.90
98 99 1.585297 AAAATGTTTGCTGTGCCTGC 58.415 45.000 0.00 0.00 0.00 4.85
99 100 0.249996 AAATGTTTGCTGTGCCTGCC 60.250 50.000 2.54 0.00 0.00 4.85
100 101 1.117142 AATGTTTGCTGTGCCTGCCT 61.117 50.000 2.54 0.00 0.00 4.75
467 468 4.354155 CTTCCGTGTTCCGCTCAA 57.646 55.556 0.00 0.00 34.38 3.02
468 469 1.860078 CTTCCGTGTTCCGCTCAAC 59.140 57.895 0.00 0.00 34.38 3.18
469 470 1.566018 CTTCCGTGTTCCGCTCAACC 61.566 60.000 0.00 0.00 34.38 3.77
470 471 2.999739 TTCCGTGTTCCGCTCAACCC 63.000 60.000 0.00 0.00 34.38 4.11
471 472 2.280524 CGTGTTCCGCTCAACCCA 60.281 61.111 0.00 0.00 0.00 4.51
472 473 2.317609 CGTGTTCCGCTCAACCCAG 61.318 63.158 0.00 0.00 0.00 4.45
473 474 1.966451 GTGTTCCGCTCAACCCAGG 60.966 63.158 0.00 0.00 0.00 4.45
474 475 3.056328 GTTCCGCTCAACCCAGGC 61.056 66.667 0.00 0.00 0.00 4.85
475 476 3.565214 TTCCGCTCAACCCAGGCA 61.565 61.111 0.00 0.00 0.00 4.75
476 477 3.126703 TTCCGCTCAACCCAGGCAA 62.127 57.895 0.00 0.00 0.00 4.52
477 478 2.597217 CCGCTCAACCCAGGCAAA 60.597 61.111 0.00 0.00 0.00 3.68
478 479 2.644992 CGCTCAACCCAGGCAAAC 59.355 61.111 0.00 0.00 0.00 2.93
479 480 2.644992 GCTCAACCCAGGCAAACG 59.355 61.111 0.00 0.00 0.00 3.60
480 481 1.896660 GCTCAACCCAGGCAAACGA 60.897 57.895 0.00 0.00 0.00 3.85
481 482 1.949257 CTCAACCCAGGCAAACGAC 59.051 57.895 0.00 0.00 0.00 4.34
482 483 0.817634 CTCAACCCAGGCAAACGACA 60.818 55.000 0.00 0.00 0.00 4.35
483 484 1.098712 TCAACCCAGGCAAACGACAC 61.099 55.000 0.00 0.00 0.00 3.67
484 485 1.077357 AACCCAGGCAAACGACACA 60.077 52.632 0.00 0.00 0.00 3.72
485 486 0.681564 AACCCAGGCAAACGACACAA 60.682 50.000 0.00 0.00 0.00 3.33
486 487 0.681564 ACCCAGGCAAACGACACAAA 60.682 50.000 0.00 0.00 0.00 2.83
487 488 0.457851 CCCAGGCAAACGACACAAAA 59.542 50.000 0.00 0.00 0.00 2.44
488 489 1.068434 CCCAGGCAAACGACACAAAAT 59.932 47.619 0.00 0.00 0.00 1.82
489 490 2.482839 CCCAGGCAAACGACACAAAATT 60.483 45.455 0.00 0.00 0.00 1.82
490 491 2.539274 CCAGGCAAACGACACAAAATTG 59.461 45.455 0.00 0.00 0.00 2.32
491 492 3.443037 CAGGCAAACGACACAAAATTGA 58.557 40.909 0.00 0.00 0.00 2.57
492 493 3.242712 CAGGCAAACGACACAAAATTGAC 59.757 43.478 0.00 0.00 0.00 3.18
493 494 2.538037 GGCAAACGACACAAAATTGACC 59.462 45.455 0.00 0.00 0.00 4.02
494 495 3.443976 GCAAACGACACAAAATTGACCT 58.556 40.909 0.00 0.00 0.00 3.85
495 496 3.485743 GCAAACGACACAAAATTGACCTC 59.514 43.478 0.00 0.00 0.00 3.85
496 497 4.667262 CAAACGACACAAAATTGACCTCA 58.333 39.130 0.00 0.00 0.00 3.86
497 498 4.552166 AACGACACAAAATTGACCTCAG 57.448 40.909 0.00 0.00 0.00 3.35
498 499 2.878406 ACGACACAAAATTGACCTCAGG 59.122 45.455 0.00 0.00 0.00 3.86
499 500 3.138304 CGACACAAAATTGACCTCAGGA 58.862 45.455 0.00 0.00 0.00 3.86
500 501 3.753272 CGACACAAAATTGACCTCAGGAT 59.247 43.478 0.00 0.00 0.00 3.24
501 502 4.378770 CGACACAAAATTGACCTCAGGATG 60.379 45.833 0.00 0.00 37.54 3.51
525 526 6.913673 TGAAACTATTTCACAAACTAAACCGC 59.086 34.615 0.00 0.00 44.21 5.68
526 527 5.025986 ACTATTTCACAAACTAAACCGCG 57.974 39.130 0.00 0.00 0.00 6.46
527 528 3.974871 ATTTCACAAACTAAACCGCGT 57.025 38.095 4.92 0.00 0.00 6.01
528 529 3.761311 TTTCACAAACTAAACCGCGTT 57.239 38.095 4.92 0.00 0.00 4.84
529 530 3.761311 TTCACAAACTAAACCGCGTTT 57.239 38.095 4.92 8.57 39.24 3.60
530 531 3.322230 TCACAAACTAAACCGCGTTTC 57.678 42.857 4.92 0.00 37.01 2.78
531 532 2.676839 TCACAAACTAAACCGCGTTTCA 59.323 40.909 4.92 0.00 37.01 2.69
532 533 3.126514 TCACAAACTAAACCGCGTTTCAA 59.873 39.130 4.92 0.00 37.01 2.69
533 534 3.852536 CACAAACTAAACCGCGTTTCAAA 59.147 39.130 4.92 0.00 37.01 2.69
534 535 4.323868 CACAAACTAAACCGCGTTTCAAAA 59.676 37.500 4.92 0.00 37.01 2.44
535 536 5.004916 CACAAACTAAACCGCGTTTCAAAAT 59.995 36.000 4.92 0.00 37.01 1.82
536 537 6.196724 CACAAACTAAACCGCGTTTCAAAATA 59.803 34.615 4.92 0.00 37.01 1.40
537 538 6.919115 ACAAACTAAACCGCGTTTCAAAATAT 59.081 30.769 4.92 0.00 37.01 1.28
538 539 7.435784 ACAAACTAAACCGCGTTTCAAAATATT 59.564 29.630 4.92 0.00 37.01 1.28
539 540 7.933728 AACTAAACCGCGTTTCAAAATATTT 57.066 28.000 4.92 0.00 37.01 1.40
540 541 7.557036 ACTAAACCGCGTTTCAAAATATTTC 57.443 32.000 4.92 0.00 37.01 2.17
541 542 7.140048 ACTAAACCGCGTTTCAAAATATTTCA 58.860 30.769 4.92 0.00 37.01 2.69
542 543 7.810759 ACTAAACCGCGTTTCAAAATATTTCAT 59.189 29.630 4.92 0.00 37.01 2.57
543 544 7.414814 AAACCGCGTTTCAAAATATTTCATT 57.585 28.000 4.92 0.00 28.86 2.57
544 545 6.626199 ACCGCGTTTCAAAATATTTCATTC 57.374 33.333 4.92 0.00 0.00 2.67
545 546 6.153067 ACCGCGTTTCAAAATATTTCATTCA 58.847 32.000 4.92 0.00 0.00 2.57
546 547 6.307800 ACCGCGTTTCAAAATATTTCATTCAG 59.692 34.615 4.92 0.00 0.00 3.02
547 548 6.307800 CCGCGTTTCAAAATATTTCATTCAGT 59.692 34.615 4.92 0.00 0.00 3.41
548 549 7.148820 CCGCGTTTCAAAATATTTCATTCAGTT 60.149 33.333 4.92 0.00 0.00 3.16
549 550 7.679634 CGCGTTTCAAAATATTTCATTCAGTTG 59.320 33.333 0.10 0.00 0.00 3.16
550 551 8.698854 GCGTTTCAAAATATTTCATTCAGTTGA 58.301 29.630 0.10 0.00 0.00 3.18
551 552 9.993881 CGTTTCAAAATATTTCATTCAGTTGAC 57.006 29.630 0.10 0.00 0.00 3.18
553 554 9.487790 TTTCAAAATATTTCATTCAGTTGACCC 57.512 29.630 0.10 0.00 0.00 4.46
554 555 7.610865 TCAAAATATTTCATTCAGTTGACCCC 58.389 34.615 0.10 0.00 0.00 4.95
555 556 7.454380 TCAAAATATTTCATTCAGTTGACCCCT 59.546 33.333 0.10 0.00 0.00 4.79
556 557 8.748412 CAAAATATTTCATTCAGTTGACCCCTA 58.252 33.333 0.10 0.00 0.00 3.53
557 558 8.893563 AAATATTTCATTCAGTTGACCCCTAA 57.106 30.769 0.00 0.00 0.00 2.69
558 559 9.492730 AAATATTTCATTCAGTTGACCCCTAAT 57.507 29.630 0.00 0.00 0.00 1.73
559 560 6.780457 ATTTCATTCAGTTGACCCCTAATG 57.220 37.500 0.00 0.00 0.00 1.90
560 561 4.927267 TCATTCAGTTGACCCCTAATGT 57.073 40.909 0.00 0.00 0.00 2.71
561 562 4.588899 TCATTCAGTTGACCCCTAATGTG 58.411 43.478 0.00 0.00 0.00 3.21
562 563 2.489938 TCAGTTGACCCCTAATGTGC 57.510 50.000 0.00 0.00 0.00 4.57
563 564 1.702401 TCAGTTGACCCCTAATGTGCA 59.298 47.619 0.00 0.00 0.00 4.57
564 565 2.086869 CAGTTGACCCCTAATGTGCAG 58.913 52.381 0.00 0.00 0.00 4.41
565 566 1.705186 AGTTGACCCCTAATGTGCAGT 59.295 47.619 0.00 0.00 0.00 4.40
566 567 1.812571 GTTGACCCCTAATGTGCAGTG 59.187 52.381 0.00 0.00 0.00 3.66
567 568 0.322456 TGACCCCTAATGTGCAGTGC 60.322 55.000 8.58 8.58 0.00 4.40
568 569 1.000896 ACCCCTAATGTGCAGTGCC 60.001 57.895 13.72 4.57 0.00 5.01
569 570 1.304282 CCCCTAATGTGCAGTGCCT 59.696 57.895 13.72 0.00 0.00 4.75
570 571 1.033746 CCCCTAATGTGCAGTGCCTG 61.034 60.000 13.72 0.00 34.12 4.85
571 572 0.035152 CCCTAATGTGCAGTGCCTGA 60.035 55.000 13.72 0.00 32.44 3.86
572 573 1.089920 CCTAATGTGCAGTGCCTGAC 58.910 55.000 13.72 4.76 32.44 3.51
573 574 1.611410 CCTAATGTGCAGTGCCTGACA 60.611 52.381 13.72 11.04 32.44 3.58
574 575 1.736126 CTAATGTGCAGTGCCTGACAG 59.264 52.381 13.72 0.00 32.44 3.51
575 576 1.521450 AATGTGCAGTGCCTGACAGC 61.521 55.000 13.72 0.00 37.59 4.40
576 577 2.592574 GTGCAGTGCCTGACAGCA 60.593 61.111 13.72 0.00 44.21 4.41
577 578 2.192711 TGCAGTGCCTGACAGCAA 59.807 55.556 13.72 0.00 43.53 3.91
578 579 1.895231 TGCAGTGCCTGACAGCAAG 60.895 57.895 13.72 0.00 43.53 4.01
579 580 1.598962 GCAGTGCCTGACAGCAAGA 60.599 57.895 2.85 0.00 46.19 3.02
580 581 1.168407 GCAGTGCCTGACAGCAAGAA 61.168 55.000 2.85 0.00 46.19 2.52
581 582 0.873054 CAGTGCCTGACAGCAAGAAG 59.127 55.000 0.00 0.00 46.19 2.85
582 583 0.888285 AGTGCCTGACAGCAAGAAGC 60.888 55.000 0.00 0.00 46.19 3.86
594 595 3.402058 GCAAGAAGCTGCACTCTAATG 57.598 47.619 1.02 1.20 42.17 1.90
595 596 2.746362 GCAAGAAGCTGCACTCTAATGT 59.254 45.455 1.02 0.00 42.17 2.71
596 597 3.425892 GCAAGAAGCTGCACTCTAATGTG 60.426 47.826 1.02 0.17 42.17 3.21
603 604 3.975992 CACTCTAATGTGCAACGCC 57.024 52.632 0.00 0.00 42.39 5.68
604 605 1.442769 CACTCTAATGTGCAACGCCT 58.557 50.000 0.00 0.00 42.39 5.52
605 606 2.616960 CACTCTAATGTGCAACGCCTA 58.383 47.619 0.00 0.00 42.39 3.93
606 607 3.000041 CACTCTAATGTGCAACGCCTAA 59.000 45.455 0.00 0.00 42.39 2.69
607 608 3.000727 ACTCTAATGTGCAACGCCTAAC 58.999 45.455 0.00 0.00 42.39 2.34
608 609 3.000041 CTCTAATGTGCAACGCCTAACA 59.000 45.455 0.00 0.00 42.39 2.41
609 610 2.739913 TCTAATGTGCAACGCCTAACAC 59.260 45.455 0.00 0.00 42.39 3.32
610 611 1.604604 AATGTGCAACGCCTAACACT 58.395 45.000 0.00 0.00 42.39 3.55
611 612 1.156736 ATGTGCAACGCCTAACACTC 58.843 50.000 0.00 0.00 42.39 3.51
612 613 0.179070 TGTGCAACGCCTAACACTCA 60.179 50.000 0.00 0.00 42.39 3.41
613 614 0.512952 GTGCAACGCCTAACACTCAG 59.487 55.000 0.00 0.00 0.00 3.35
614 615 0.602638 TGCAACGCCTAACACTCAGG 60.603 55.000 0.00 0.00 36.16 3.86
619 620 2.662596 CCTAACACTCAGGCGCCA 59.337 61.111 31.54 7.98 0.00 5.69
620 621 1.221840 CCTAACACTCAGGCGCCAT 59.778 57.895 31.54 11.31 0.00 4.40
621 622 0.464036 CCTAACACTCAGGCGCCATA 59.536 55.000 31.54 15.38 0.00 2.74
622 623 1.070758 CCTAACACTCAGGCGCCATAT 59.929 52.381 31.54 4.59 0.00 1.78
623 624 2.408050 CTAACACTCAGGCGCCATATC 58.592 52.381 31.54 0.00 0.00 1.63
624 625 0.179045 AACACTCAGGCGCCATATCC 60.179 55.000 31.54 0.00 0.00 2.59
625 626 1.665916 CACTCAGGCGCCATATCCG 60.666 63.158 31.54 12.68 0.00 4.18
626 627 2.134287 ACTCAGGCGCCATATCCGT 61.134 57.895 31.54 13.37 0.00 4.69
627 628 1.665916 CTCAGGCGCCATATCCGTG 60.666 63.158 31.54 16.59 0.00 4.94
628 629 2.108976 CAGGCGCCATATCCGTGT 59.891 61.111 31.54 0.00 0.00 4.49
629 630 1.110518 TCAGGCGCCATATCCGTGTA 61.111 55.000 31.54 3.54 0.00 2.90
630 631 0.249699 CAGGCGCCATATCCGTGTAA 60.250 55.000 31.54 0.00 0.00 2.41
631 632 0.249741 AGGCGCCATATCCGTGTAAC 60.250 55.000 31.54 0.00 0.00 2.50
647 648 5.774878 GTGTAACGCCTAGTTTTAAGGAG 57.225 43.478 0.00 0.00 43.86 3.69
651 652 3.072211 ACGCCTAGTTTTAAGGAGTTGC 58.928 45.455 0.00 0.00 43.65 4.17
652 653 3.071479 CGCCTAGTTTTAAGGAGTTGCA 58.929 45.455 0.00 0.00 36.08 4.08
653 654 3.120304 CGCCTAGTTTTAAGGAGTTGCAC 60.120 47.826 0.00 0.00 36.08 4.57
654 655 4.072839 GCCTAGTTTTAAGGAGTTGCACT 58.927 43.478 0.00 0.00 36.08 4.40
655 656 5.243207 GCCTAGTTTTAAGGAGTTGCACTA 58.757 41.667 0.00 0.00 36.08 2.74
656 657 5.121925 GCCTAGTTTTAAGGAGTTGCACTAC 59.878 44.000 0.00 0.00 36.08 2.73
657 658 6.228258 CCTAGTTTTAAGGAGTTGCACTACA 58.772 40.000 0.00 0.00 36.08 2.74
658 659 6.147328 CCTAGTTTTAAGGAGTTGCACTACAC 59.853 42.308 0.00 0.00 36.08 2.90
659 660 5.681639 AGTTTTAAGGAGTTGCACTACACT 58.318 37.500 0.00 0.00 29.09 3.55
660 661 6.823497 AGTTTTAAGGAGTTGCACTACACTA 58.177 36.000 0.00 0.00 29.09 2.74
661 662 7.450903 AGTTTTAAGGAGTTGCACTACACTAT 58.549 34.615 0.00 0.00 29.09 2.12
662 663 7.387948 AGTTTTAAGGAGTTGCACTACACTATG 59.612 37.037 0.00 0.00 29.09 2.23
663 664 3.252974 AGGAGTTGCACTACACTATGC 57.747 47.619 0.00 0.00 42.40 3.14
667 668 3.049227 TGCACTACACTATGCAGCG 57.951 52.632 0.00 0.00 46.63 5.18
668 669 1.083806 TGCACTACACTATGCAGCGC 61.084 55.000 0.00 0.00 46.63 5.92
669 670 1.766143 GCACTACACTATGCAGCGCC 61.766 60.000 2.29 0.00 41.65 6.53
670 671 0.179100 CACTACACTATGCAGCGCCT 60.179 55.000 2.29 0.00 0.00 5.52
671 672 1.067060 CACTACACTATGCAGCGCCTA 59.933 52.381 2.29 0.00 0.00 3.93
672 673 1.338337 ACTACACTATGCAGCGCCTAG 59.662 52.381 2.29 2.93 33.97 3.02
685 686 2.851534 GCGCCTAGCTGTAAAAAGTTG 58.148 47.619 0.00 0.00 44.04 3.16
686 687 2.851534 CGCCTAGCTGTAAAAAGTTGC 58.148 47.619 0.00 0.00 0.00 4.17
687 688 2.225491 CGCCTAGCTGTAAAAAGTTGCA 59.775 45.455 0.00 0.00 0.00 4.08
688 689 3.565516 GCCTAGCTGTAAAAAGTTGCAC 58.434 45.455 0.00 0.00 0.00 4.57
689 690 3.004315 GCCTAGCTGTAAAAAGTTGCACA 59.996 43.478 0.00 0.00 0.00 4.57
690 691 4.787598 CCTAGCTGTAAAAAGTTGCACAG 58.212 43.478 0.00 7.18 41.06 3.66
691 692 4.275936 CCTAGCTGTAAAAAGTTGCACAGT 59.724 41.667 0.00 4.23 40.40 3.55
692 693 5.468746 CCTAGCTGTAAAAAGTTGCACAGTA 59.531 40.000 0.00 4.87 40.40 2.74
693 694 5.828299 AGCTGTAAAAAGTTGCACAGTAA 57.172 34.783 11.34 0.00 40.40 2.24
694 695 6.202516 AGCTGTAAAAAGTTGCACAGTAAA 57.797 33.333 11.34 0.00 40.40 2.01
695 696 6.265577 AGCTGTAAAAAGTTGCACAGTAAAG 58.734 36.000 11.34 0.00 40.40 1.85
696 697 6.033966 GCTGTAAAAAGTTGCACAGTAAAGT 58.966 36.000 11.34 0.00 40.40 2.66
697 698 6.020678 GCTGTAAAAAGTTGCACAGTAAAGTG 60.021 38.462 11.34 0.00 40.40 3.16
698 699 6.915349 TGTAAAAAGTTGCACAGTAAAGTGT 58.085 32.000 0.00 0.00 41.52 3.55
699 700 8.041829 TGTAAAAAGTTGCACAGTAAAGTGTA 57.958 30.769 0.00 0.00 41.52 2.90
700 701 8.512956 TGTAAAAAGTTGCACAGTAAAGTGTAA 58.487 29.630 0.00 0.00 40.89 2.41
704 705 4.782252 TTGCACAGTAAAGTGTAACGAC 57.218 40.909 0.00 0.00 45.86 4.34
705 706 4.049546 TGCACAGTAAAGTGTAACGACT 57.950 40.909 0.00 0.00 45.86 4.18
706 707 5.185668 TGCACAGTAAAGTGTAACGACTA 57.814 39.130 0.00 0.00 45.86 2.59
707 708 5.590145 TGCACAGTAAAGTGTAACGACTAA 58.410 37.500 0.00 0.00 45.86 2.24
708 709 5.459762 TGCACAGTAAAGTGTAACGACTAAC 59.540 40.000 0.00 0.00 45.86 2.34
709 710 5.107722 GCACAGTAAAGTGTAACGACTAACC 60.108 44.000 0.00 0.00 45.86 2.85
710 711 5.116074 CACAGTAAAGTGTAACGACTAACCG 59.884 44.000 0.00 0.00 45.86 4.44
711 712 5.215160 CAGTAAAGTGTAACGACTAACCGT 58.785 41.667 0.00 0.00 45.86 4.83
712 713 5.340667 CAGTAAAGTGTAACGACTAACCGTC 59.659 44.000 0.00 0.00 45.86 4.79
719 720 3.600843 GACTAACCGTCGGGCTCT 58.399 61.111 17.28 0.00 36.48 4.09
720 721 1.139095 GACTAACCGTCGGGCTCTG 59.861 63.158 17.28 3.51 36.48 3.35
721 722 2.202756 CTAACCGTCGGGCTCTGC 60.203 66.667 17.28 0.00 36.48 4.26
722 723 2.992689 TAACCGTCGGGCTCTGCA 60.993 61.111 17.28 0.00 36.48 4.41
723 724 3.291101 TAACCGTCGGGCTCTGCAC 62.291 63.158 17.28 0.00 36.48 4.57
725 726 4.680237 CCGTCGGGCTCTGCACAA 62.680 66.667 2.34 0.00 0.00 3.33
726 727 2.664851 CGTCGGGCTCTGCACAAA 60.665 61.111 0.00 0.00 0.00 2.83
727 728 2.250939 CGTCGGGCTCTGCACAAAA 61.251 57.895 0.00 0.00 0.00 2.44
728 729 1.576421 GTCGGGCTCTGCACAAAAG 59.424 57.895 0.00 0.00 0.00 2.27
729 730 1.600636 TCGGGCTCTGCACAAAAGG 60.601 57.895 0.00 0.00 0.00 3.11
730 731 2.629656 CGGGCTCTGCACAAAAGGG 61.630 63.158 0.00 0.00 0.00 3.95
731 732 2.653115 GGCTCTGCACAAAAGGGC 59.347 61.111 0.00 0.00 40.64 5.19
732 733 2.202395 GGCTCTGCACAAAAGGGCA 61.202 57.895 0.00 0.00 43.34 5.36
736 737 2.518112 TGCACAAAAGGGCAGCGA 60.518 55.556 0.00 0.00 34.58 4.93
737 738 1.902918 TGCACAAAAGGGCAGCGAT 60.903 52.632 0.00 0.00 34.58 4.58
738 739 1.444895 GCACAAAAGGGCAGCGATG 60.445 57.895 0.00 0.00 0.00 3.84
739 740 1.959085 CACAAAAGGGCAGCGATGT 59.041 52.632 1.22 0.00 0.00 3.06
740 741 0.387622 CACAAAAGGGCAGCGATGTG 60.388 55.000 1.22 0.00 33.13 3.21
741 742 0.537143 ACAAAAGGGCAGCGATGTGA 60.537 50.000 1.22 0.00 0.00 3.58
742 743 0.597568 CAAAAGGGCAGCGATGTGAA 59.402 50.000 1.22 0.00 0.00 3.18
743 744 1.203052 CAAAAGGGCAGCGATGTGAAT 59.797 47.619 1.22 0.00 0.00 2.57
744 745 1.549203 AAAGGGCAGCGATGTGAATT 58.451 45.000 1.22 0.00 0.00 2.17
745 746 1.549203 AAGGGCAGCGATGTGAATTT 58.451 45.000 1.22 0.00 0.00 1.82
746 747 1.549203 AGGGCAGCGATGTGAATTTT 58.451 45.000 1.22 0.00 0.00 1.82
747 748 1.895131 AGGGCAGCGATGTGAATTTTT 59.105 42.857 1.22 0.00 0.00 1.94
789 790 3.670625 TGAAATACTTTCACACGGAGGG 58.329 45.455 0.00 0.00 44.21 4.30
790 791 2.109425 AATACTTTCACACGGAGGGC 57.891 50.000 0.00 0.00 0.00 5.19
791 792 0.981183 ATACTTTCACACGGAGGGCA 59.019 50.000 0.00 0.00 0.00 5.36
792 793 0.759959 TACTTTCACACGGAGGGCAA 59.240 50.000 0.00 0.00 0.00 4.52
793 794 0.106918 ACTTTCACACGGAGGGCAAA 60.107 50.000 0.00 0.00 0.00 3.68
794 795 1.247567 CTTTCACACGGAGGGCAAAT 58.752 50.000 0.00 0.00 0.00 2.32
795 796 1.613437 CTTTCACACGGAGGGCAAATT 59.387 47.619 0.00 0.00 0.00 1.82
796 797 1.698506 TTCACACGGAGGGCAAATTT 58.301 45.000 0.00 0.00 0.00 1.82
797 798 0.958091 TCACACGGAGGGCAAATTTG 59.042 50.000 14.03 14.03 0.00 2.32
798 799 0.673437 CACACGGAGGGCAAATTTGT 59.327 50.000 19.03 0.00 0.00 2.83
799 800 1.068434 CACACGGAGGGCAAATTTGTT 59.932 47.619 19.03 5.94 0.00 2.83
800 801 2.294791 CACACGGAGGGCAAATTTGTTA 59.705 45.455 19.03 0.00 0.00 2.41
801 802 2.959707 ACACGGAGGGCAAATTTGTTAA 59.040 40.909 19.03 0.00 0.00 2.01
802 803 3.576550 ACACGGAGGGCAAATTTGTTAAT 59.423 39.130 19.03 3.84 0.00 1.40
803 804 4.039852 ACACGGAGGGCAAATTTGTTAATT 59.960 37.500 19.03 1.88 35.49 1.40
804 805 4.994217 CACGGAGGGCAAATTTGTTAATTT 59.006 37.500 19.03 0.55 43.09 1.82
805 806 5.468409 CACGGAGGGCAAATTTGTTAATTTT 59.532 36.000 19.03 0.00 40.97 1.82
806 807 5.468409 ACGGAGGGCAAATTTGTTAATTTTG 59.532 36.000 19.03 6.09 40.97 2.44
807 808 5.616645 CGGAGGGCAAATTTGTTAATTTTGC 60.617 40.000 19.03 18.31 40.97 3.68
808 809 5.335583 GGAGGGCAAATTTGTTAATTTTGCC 60.336 40.000 27.88 27.88 45.22 4.52
810 811 5.703978 GGCAAATTTGTTAATTTTGCCCT 57.296 34.783 26.68 0.00 43.23 5.19
811 812 5.698832 GGCAAATTTGTTAATTTTGCCCTC 58.301 37.500 26.68 12.99 43.23 4.30
812 813 5.381477 GCAAATTTGTTAATTTTGCCCTCG 58.619 37.500 19.03 0.00 40.97 4.63
817 818 1.131693 GTTAATTTTGCCCTCGACCCG 59.868 52.381 0.00 0.00 0.00 5.28
841 842 1.982073 GACCGACCGATAACGACCGT 61.982 60.000 0.00 0.00 42.66 4.83
888 890 2.705826 CGCGCCAGAGCAAAGATC 59.294 61.111 0.00 0.00 39.83 2.75
895 897 1.734465 CCAGAGCAAAGATCGACAACC 59.266 52.381 0.00 0.00 0.00 3.77
925 927 6.530181 GCAGAAAACGGAAGAAAAAGAAAAGA 59.470 34.615 0.00 0.00 0.00 2.52
979 981 3.361977 ACGCACGCCACCCAAATC 61.362 61.111 0.00 0.00 0.00 2.17
987 989 1.996086 CCACCCAAATCCCCGTAGT 59.004 57.895 0.00 0.00 0.00 2.73
1110 1120 2.105649 CAGAATAAGAGGGAGAAGGGGC 59.894 54.545 0.00 0.00 0.00 5.80
1398 1409 4.200283 CTCTCCGAGCAGTCCGCC 62.200 72.222 0.00 0.00 44.04 6.13
1650 1661 1.227263 CGGATTCTACGGCCACCTG 60.227 63.158 2.24 0.00 0.00 4.00
1865 1876 3.583086 AGTAACTGCTTGCTCCCTAAGAA 59.417 43.478 0.00 0.00 0.00 2.52
2025 2036 4.162131 TGCAGACTATCAGAATGTAAGCCA 59.838 41.667 0.00 0.00 37.40 4.75
2260 2271 1.609208 AAACAATGCAGGAAGACGCT 58.391 45.000 0.00 0.00 0.00 5.07
2370 2381 5.536538 TCAAGCTCTCAGAAGTCAACTAAGA 59.463 40.000 0.00 0.00 0.00 2.10
2376 2387 7.589958 TCTCAGAAGTCAACTAAGAGAGTTT 57.410 36.000 0.00 0.00 46.79 2.66
2439 2450 3.983044 ATAAGGAGACACTGGAACACC 57.017 47.619 0.00 0.00 0.00 4.16
2528 2539 5.809562 AGAGCGAAAATGAGAGTGATAACAG 59.190 40.000 0.00 0.00 0.00 3.16
2689 2700 3.195661 GCTCCGTATAAAACTCCAGTGG 58.804 50.000 1.40 1.40 0.00 4.00
2692 2703 4.824289 TCCGTATAAAACTCCAGTGGTTC 58.176 43.478 9.54 0.00 0.00 3.62
2694 2705 4.630069 CCGTATAAAACTCCAGTGGTTCTG 59.370 45.833 9.54 1.08 43.27 3.02
2751 2762 4.098501 GGCATTGTATTAAGCAAGCTCCTT 59.901 41.667 0.00 5.13 0.00 3.36
2767 2778 2.821969 CTCCTTTCTCATGGGGTTGTTG 59.178 50.000 0.00 0.00 0.00 3.33
2789 2800 0.723981 GCTGGTTCGAAGTCATCTGC 59.276 55.000 0.00 0.00 0.00 4.26
2791 2802 2.266554 CTGGTTCGAAGTCATCTGCTC 58.733 52.381 0.00 0.00 0.00 4.26
2838 2849 4.602259 CGGGCCGTGACACACACT 62.602 66.667 19.97 0.00 46.24 3.55
2862 2873 9.073475 ACTGTAATATCATCTGTAGAGAGAACC 57.927 37.037 0.00 0.00 0.00 3.62
2883 2894 3.367051 CTTGTTGGCGATGCGGACG 62.367 63.158 0.00 0.00 0.00 4.79
3006 3017 2.552591 CCTGAAGCATGGAGATGGGATC 60.553 54.545 0.00 0.00 0.00 3.36
3018 3029 2.512515 GGGATCGAGTGTGCTGCC 60.513 66.667 0.00 0.00 0.00 4.85
3084 3095 0.179086 TTGAGAGCTTGCGTGTCACA 60.179 50.000 3.42 0.00 0.00 3.58
3096 3107 2.754472 CGTGTCACATCAGAGGAAACA 58.246 47.619 3.42 0.00 0.00 2.83
3226 3237 7.591006 AGATTTCATCATGCAATTTTGTCAC 57.409 32.000 0.00 0.00 0.00 3.67
3412 3427 6.422100 ACAGAGCATACACATAATTCGATGTC 59.578 38.462 0.00 0.00 37.99 3.06
3442 3457 9.736023 GCTTTAGTAATTTATTGATTCCCAGTG 57.264 33.333 0.00 0.00 0.00 3.66
3477 3501 6.146347 GGTACAAGATCTGAGTGAAACACTTC 59.854 42.308 10.48 0.44 45.44 3.01
3490 3514 9.350357 GAGTGAAACACTTCGTTGATAGTATTA 57.650 33.333 5.88 0.00 45.44 0.98
3652 3676 4.329392 CATATTGTGGCTGCCATAGATCA 58.671 43.478 26.22 14.76 35.28 2.92
3657 3681 1.350019 TGGCTGCCATAGATCATCTGG 59.650 52.381 19.30 0.00 0.00 3.86
3703 3727 1.821136 GGAAAAGTAGGCAGCAGCATT 59.179 47.619 2.65 0.00 44.61 3.56
4190 4214 7.062956 CACCAAAGAAGAACAAAGGTAAAACAC 59.937 37.037 0.00 0.00 0.00 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.531206 GTAGTCTTGACGATGGTGCTC 58.469 52.381 0.00 0.00 0.00 4.26
2 3 1.135373 CGTAGTCTTGACGATGGTGCT 60.135 52.381 0.00 0.00 42.98 4.40
3 4 1.135489 TCGTAGTCTTGACGATGGTGC 60.135 52.381 0.00 0.00 43.99 5.01
9 10 6.864685 ACAATATTTTGTCGTAGTCTTGACGA 59.135 34.615 0.00 0.00 42.43 4.20
10 11 7.045725 ACAATATTTTGTCGTAGTCTTGACG 57.954 36.000 0.00 0.00 42.43 4.35
11 12 9.737025 GTAACAATATTTTGTCGTAGTCTTGAC 57.263 33.333 1.83 0.00 45.30 3.18
12 13 9.478768 TGTAACAATATTTTGTCGTAGTCTTGA 57.521 29.630 1.83 0.00 45.30 3.02
13 14 9.741168 CTGTAACAATATTTTGTCGTAGTCTTG 57.259 33.333 1.83 0.00 45.30 3.02
14 15 9.485206 ACTGTAACAATATTTTGTCGTAGTCTT 57.515 29.630 1.83 0.00 45.30 3.01
78 79 1.941975 GCAGGCACAGCAAACATTTTT 59.058 42.857 0.00 0.00 41.82 1.94
79 80 1.585297 GCAGGCACAGCAAACATTTT 58.415 45.000 0.00 0.00 41.82 1.82
80 81 0.249996 GGCAGGCACAGCAAACATTT 60.250 50.000 0.00 0.00 44.97 2.32
81 82 1.117142 AGGCAGGCACAGCAAACATT 61.117 50.000 0.00 0.00 44.97 2.71
82 83 1.532316 AGGCAGGCACAGCAAACAT 60.532 52.632 0.00 0.00 44.97 2.71
83 84 2.123769 AGGCAGGCACAGCAAACA 60.124 55.556 0.00 0.00 44.97 2.83
450 451 1.566018 GGTTGAGCGGAACACGGAAG 61.566 60.000 3.70 0.00 44.51 3.46
451 452 1.595929 GGTTGAGCGGAACACGGAA 60.596 57.895 3.70 0.00 44.51 4.30
452 453 2.029964 GGTTGAGCGGAACACGGA 59.970 61.111 3.70 0.00 44.51 4.69
453 454 3.047877 GGGTTGAGCGGAACACGG 61.048 66.667 3.70 0.00 44.51 4.94
455 456 1.966451 CCTGGGTTGAGCGGAACAC 60.966 63.158 3.70 0.36 0.00 3.32
456 457 2.429930 CCTGGGTTGAGCGGAACA 59.570 61.111 3.70 0.00 0.00 3.18
457 458 3.056328 GCCTGGGTTGAGCGGAAC 61.056 66.667 0.00 0.00 0.00 3.62
458 459 2.632602 TTTGCCTGGGTTGAGCGGAA 62.633 55.000 0.00 0.00 0.00 4.30
459 460 3.126703 TTTGCCTGGGTTGAGCGGA 62.127 57.895 0.00 0.00 0.00 5.54
460 461 2.597217 TTTGCCTGGGTTGAGCGG 60.597 61.111 0.00 0.00 0.00 5.52
461 462 2.644992 GTTTGCCTGGGTTGAGCG 59.355 61.111 0.00 0.00 0.00 5.03
462 463 1.896660 TCGTTTGCCTGGGTTGAGC 60.897 57.895 0.00 0.00 0.00 4.26
463 464 0.817634 TGTCGTTTGCCTGGGTTGAG 60.818 55.000 0.00 0.00 0.00 3.02
464 465 1.098712 GTGTCGTTTGCCTGGGTTGA 61.099 55.000 0.00 0.00 0.00 3.18
465 466 1.358759 GTGTCGTTTGCCTGGGTTG 59.641 57.895 0.00 0.00 0.00 3.77
466 467 0.681564 TTGTGTCGTTTGCCTGGGTT 60.682 50.000 0.00 0.00 0.00 4.11
467 468 0.681564 TTTGTGTCGTTTGCCTGGGT 60.682 50.000 0.00 0.00 0.00 4.51
468 469 0.457851 TTTTGTGTCGTTTGCCTGGG 59.542 50.000 0.00 0.00 0.00 4.45
469 470 2.507339 ATTTTGTGTCGTTTGCCTGG 57.493 45.000 0.00 0.00 0.00 4.45
470 471 3.242712 GTCAATTTTGTGTCGTTTGCCTG 59.757 43.478 0.00 0.00 0.00 4.85
471 472 3.443976 GTCAATTTTGTGTCGTTTGCCT 58.556 40.909 0.00 0.00 0.00 4.75
472 473 2.538037 GGTCAATTTTGTGTCGTTTGCC 59.462 45.455 0.00 0.00 0.00 4.52
473 474 3.443976 AGGTCAATTTTGTGTCGTTTGC 58.556 40.909 0.00 0.00 0.00 3.68
474 475 4.667262 TGAGGTCAATTTTGTGTCGTTTG 58.333 39.130 0.00 0.00 0.00 2.93
475 476 4.202010 CCTGAGGTCAATTTTGTGTCGTTT 60.202 41.667 0.00 0.00 0.00 3.60
476 477 3.315191 CCTGAGGTCAATTTTGTGTCGTT 59.685 43.478 0.00 0.00 0.00 3.85
477 478 2.878406 CCTGAGGTCAATTTTGTGTCGT 59.122 45.455 0.00 0.00 0.00 4.34
478 479 3.138304 TCCTGAGGTCAATTTTGTGTCG 58.862 45.455 0.00 0.00 0.00 4.35
479 480 4.761739 TCATCCTGAGGTCAATTTTGTGTC 59.238 41.667 0.00 0.00 0.00 3.67
480 481 4.728772 TCATCCTGAGGTCAATTTTGTGT 58.271 39.130 0.00 0.00 0.00 3.72
481 482 5.710513 TTCATCCTGAGGTCAATTTTGTG 57.289 39.130 0.00 0.00 0.00 3.33
482 483 5.835280 AGTTTCATCCTGAGGTCAATTTTGT 59.165 36.000 0.00 0.00 0.00 2.83
483 484 6.336842 AGTTTCATCCTGAGGTCAATTTTG 57.663 37.500 0.00 0.00 0.00 2.44
484 485 8.655935 AATAGTTTCATCCTGAGGTCAATTTT 57.344 30.769 0.00 0.00 0.00 1.82
485 486 8.655935 AAATAGTTTCATCCTGAGGTCAATTT 57.344 30.769 0.00 0.00 0.00 1.82
486 487 7.890127 TGAAATAGTTTCATCCTGAGGTCAATT 59.110 33.333 0.00 0.00 44.21 2.32
487 488 7.405292 TGAAATAGTTTCATCCTGAGGTCAAT 58.595 34.615 0.00 0.00 44.21 2.57
488 489 6.778821 TGAAATAGTTTCATCCTGAGGTCAA 58.221 36.000 0.00 0.00 44.21 3.18
489 490 6.373005 TGAAATAGTTTCATCCTGAGGTCA 57.627 37.500 0.00 0.00 44.21 4.02
500 501 6.913673 GCGGTTTAGTTTGTGAAATAGTTTCA 59.086 34.615 1.24 1.24 46.68 2.69
501 502 6.085849 CGCGGTTTAGTTTGTGAAATAGTTTC 59.914 38.462 0.00 0.00 40.08 2.78
502 503 5.910723 CGCGGTTTAGTTTGTGAAATAGTTT 59.089 36.000 0.00 0.00 0.00 2.66
503 504 5.007921 ACGCGGTTTAGTTTGTGAAATAGTT 59.992 36.000 12.47 0.00 0.00 2.24
504 505 4.512571 ACGCGGTTTAGTTTGTGAAATAGT 59.487 37.500 12.47 0.00 0.00 2.12
505 506 5.025986 ACGCGGTTTAGTTTGTGAAATAG 57.974 39.130 12.47 0.00 0.00 1.73
506 507 5.421212 AACGCGGTTTAGTTTGTGAAATA 57.579 34.783 12.47 0.00 0.00 1.40
507 508 3.974871 ACGCGGTTTAGTTTGTGAAAT 57.025 38.095 12.47 0.00 0.00 2.17
508 509 3.761311 AACGCGGTTTAGTTTGTGAAA 57.239 38.095 12.47 0.00 0.00 2.69
509 510 3.126514 TGAAACGCGGTTTAGTTTGTGAA 59.873 39.130 12.36 0.00 40.24 3.18
510 511 2.676839 TGAAACGCGGTTTAGTTTGTGA 59.323 40.909 12.36 0.00 40.24 3.58
511 512 3.054276 TGAAACGCGGTTTAGTTTGTG 57.946 42.857 12.36 0.00 40.24 3.33
512 513 3.761311 TTGAAACGCGGTTTAGTTTGT 57.239 38.095 12.36 0.00 40.24 2.83
513 514 5.629348 ATTTTGAAACGCGGTTTAGTTTG 57.371 34.783 12.36 0.00 40.24 2.93
514 515 7.933728 AATATTTTGAAACGCGGTTTAGTTT 57.066 28.000 12.36 0.00 42.50 2.66
515 516 7.648510 TGAAATATTTTGAAACGCGGTTTAGTT 59.351 29.630 12.36 4.15 35.77 2.24
516 517 7.140048 TGAAATATTTTGAAACGCGGTTTAGT 58.860 30.769 12.36 0.00 35.77 2.24
517 518 7.555639 TGAAATATTTTGAAACGCGGTTTAG 57.444 32.000 12.36 0.00 35.77 1.85
518 519 8.522178 AATGAAATATTTTGAAACGCGGTTTA 57.478 26.923 12.36 3.09 35.77 2.01
519 520 7.169982 TGAATGAAATATTTTGAAACGCGGTTT 59.830 29.630 12.36 8.71 38.54 3.27
520 521 6.642950 TGAATGAAATATTTTGAAACGCGGTT 59.357 30.769 10.35 10.35 0.00 4.44
521 522 6.153067 TGAATGAAATATTTTGAAACGCGGT 58.847 32.000 12.47 0.00 0.00 5.68
522 523 6.307800 ACTGAATGAAATATTTTGAAACGCGG 59.692 34.615 12.47 0.00 0.00 6.46
523 524 7.264448 ACTGAATGAAATATTTTGAAACGCG 57.736 32.000 3.53 3.53 0.00 6.01
524 525 8.698854 TCAACTGAATGAAATATTTTGAAACGC 58.301 29.630 1.43 0.00 0.00 4.84
525 526 9.993881 GTCAACTGAATGAAATATTTTGAAACG 57.006 29.630 1.43 0.00 0.00 3.60
527 528 9.487790 GGGTCAACTGAATGAAATATTTTGAAA 57.512 29.630 1.43 0.00 0.00 2.69
528 529 8.093927 GGGGTCAACTGAATGAAATATTTTGAA 58.906 33.333 1.43 0.00 0.00 2.69
529 530 7.454380 AGGGGTCAACTGAATGAAATATTTTGA 59.546 33.333 1.43 0.00 0.00 2.69
530 531 7.614494 AGGGGTCAACTGAATGAAATATTTTG 58.386 34.615 1.43 0.00 0.00 2.44
531 532 7.797121 AGGGGTCAACTGAATGAAATATTTT 57.203 32.000 1.43 0.00 0.00 1.82
532 533 8.893563 TTAGGGGTCAACTGAATGAAATATTT 57.106 30.769 0.00 0.00 0.00 1.40
533 534 8.917088 CATTAGGGGTCAACTGAATGAAATATT 58.083 33.333 0.00 0.00 0.00 1.28
534 535 8.061304 ACATTAGGGGTCAACTGAATGAAATAT 58.939 33.333 0.00 0.00 0.00 1.28
535 536 7.339212 CACATTAGGGGTCAACTGAATGAAATA 59.661 37.037 0.00 0.00 0.00 1.40
536 537 6.153340 CACATTAGGGGTCAACTGAATGAAAT 59.847 38.462 0.00 0.00 0.00 2.17
537 538 5.476599 CACATTAGGGGTCAACTGAATGAAA 59.523 40.000 0.00 0.00 0.00 2.69
538 539 5.009631 CACATTAGGGGTCAACTGAATGAA 58.990 41.667 0.00 0.00 0.00 2.57
539 540 4.588899 CACATTAGGGGTCAACTGAATGA 58.411 43.478 0.00 0.00 0.00 2.57
540 541 3.129287 GCACATTAGGGGTCAACTGAATG 59.871 47.826 0.00 0.00 0.00 2.67
541 542 3.245229 TGCACATTAGGGGTCAACTGAAT 60.245 43.478 0.00 0.00 0.00 2.57
542 543 2.107378 TGCACATTAGGGGTCAACTGAA 59.893 45.455 0.00 0.00 0.00 3.02
543 544 1.702401 TGCACATTAGGGGTCAACTGA 59.298 47.619 0.00 0.00 0.00 3.41
544 545 2.086869 CTGCACATTAGGGGTCAACTG 58.913 52.381 0.00 0.00 0.00 3.16
545 546 1.705186 ACTGCACATTAGGGGTCAACT 59.295 47.619 0.00 0.00 0.00 3.16
546 547 1.812571 CACTGCACATTAGGGGTCAAC 59.187 52.381 0.00 0.00 0.00 3.18
547 548 1.886222 GCACTGCACATTAGGGGTCAA 60.886 52.381 0.00 0.00 0.00 3.18
548 549 0.322456 GCACTGCACATTAGGGGTCA 60.322 55.000 0.00 0.00 0.00 4.02
549 550 1.032114 GGCACTGCACATTAGGGGTC 61.032 60.000 2.82 0.00 0.00 4.46
550 551 1.000896 GGCACTGCACATTAGGGGT 60.001 57.895 2.82 0.00 0.00 4.95
551 552 1.304282 AGGCACTGCACATTAGGGG 59.696 57.895 2.82 0.00 37.18 4.79
563 564 0.888285 GCTTCTTGCTGTCAGGCACT 60.888 55.000 1.14 0.00 42.27 4.40
564 565 1.578423 GCTTCTTGCTGTCAGGCAC 59.422 57.895 1.14 0.00 42.27 5.01
565 566 4.069869 GCTTCTTGCTGTCAGGCA 57.930 55.556 1.14 0.00 40.74 4.75
574 575 2.746362 ACATTAGAGTGCAGCTTCTTGC 59.254 45.455 5.48 0.00 44.33 4.01
575 576 4.337985 CACATTAGAGTGCAGCTTCTTG 57.662 45.455 5.48 2.63 32.04 3.02
585 586 1.442769 AGGCGTTGCACATTAGAGTG 58.557 50.000 0.00 0.00 42.37 3.51
586 587 3.000727 GTTAGGCGTTGCACATTAGAGT 58.999 45.455 0.00 0.00 0.00 3.24
587 588 3.000041 TGTTAGGCGTTGCACATTAGAG 59.000 45.455 0.00 0.00 0.00 2.43
588 589 2.739913 GTGTTAGGCGTTGCACATTAGA 59.260 45.455 0.00 0.00 32.62 2.10
589 590 2.742053 AGTGTTAGGCGTTGCACATTAG 59.258 45.455 13.03 0.00 34.59 1.73
590 591 2.739913 GAGTGTTAGGCGTTGCACATTA 59.260 45.455 13.03 0.00 34.59 1.90
591 592 1.535462 GAGTGTTAGGCGTTGCACATT 59.465 47.619 13.03 0.10 34.59 2.71
592 593 1.156736 GAGTGTTAGGCGTTGCACAT 58.843 50.000 13.03 2.21 34.59 3.21
593 594 0.179070 TGAGTGTTAGGCGTTGCACA 60.179 50.000 13.03 0.24 34.59 4.57
594 595 0.512952 CTGAGTGTTAGGCGTTGCAC 59.487 55.000 0.00 5.31 0.00 4.57
595 596 0.602638 CCTGAGTGTTAGGCGTTGCA 60.603 55.000 0.00 0.00 0.00 4.08
596 597 2.162716 CCTGAGTGTTAGGCGTTGC 58.837 57.895 0.00 0.00 0.00 4.17
602 603 0.464036 TATGGCGCCTGAGTGTTAGG 59.536 55.000 29.70 0.00 38.39 2.69
603 604 2.408050 GATATGGCGCCTGAGTGTTAG 58.592 52.381 29.70 0.00 0.00 2.34
604 605 1.070134 GGATATGGCGCCTGAGTGTTA 59.930 52.381 29.70 4.25 0.00 2.41
605 606 0.179045 GGATATGGCGCCTGAGTGTT 60.179 55.000 29.70 5.10 0.00 3.32
606 607 1.447643 GGATATGGCGCCTGAGTGT 59.552 57.895 29.70 9.31 0.00 3.55
607 608 1.665916 CGGATATGGCGCCTGAGTG 60.666 63.158 29.70 9.40 0.00 3.51
608 609 2.134287 ACGGATATGGCGCCTGAGT 61.134 57.895 29.70 15.54 0.00 3.41
609 610 1.665916 CACGGATATGGCGCCTGAG 60.666 63.158 29.70 14.89 0.00 3.35
610 611 1.110518 TACACGGATATGGCGCCTGA 61.111 55.000 29.70 16.12 0.00 3.86
611 612 0.249699 TTACACGGATATGGCGCCTG 60.250 55.000 29.70 18.02 0.00 4.85
612 613 0.249741 GTTACACGGATATGGCGCCT 60.250 55.000 29.70 15.76 0.00 5.52
613 614 1.554042 CGTTACACGGATATGGCGCC 61.554 60.000 22.73 22.73 38.08 6.53
614 615 1.850640 CGTTACACGGATATGGCGC 59.149 57.895 0.00 0.00 38.08 6.53
615 616 1.554042 GGCGTTACACGGATATGGCG 61.554 60.000 0.00 0.00 42.82 5.69
616 617 0.249741 AGGCGTTACACGGATATGGC 60.250 55.000 0.00 0.00 42.82 4.40
617 618 2.295349 ACTAGGCGTTACACGGATATGG 59.705 50.000 0.00 0.00 42.82 2.74
618 619 3.637998 ACTAGGCGTTACACGGATATG 57.362 47.619 0.00 0.00 42.82 1.78
619 620 4.660789 AAACTAGGCGTTACACGGATAT 57.339 40.909 0.00 0.00 42.82 1.63
620 621 4.454728 AAAACTAGGCGTTACACGGATA 57.545 40.909 0.00 0.00 42.82 2.59
621 622 3.323751 AAAACTAGGCGTTACACGGAT 57.676 42.857 0.00 0.00 42.82 4.18
622 623 2.818130 AAAACTAGGCGTTACACGGA 57.182 45.000 0.00 0.00 42.82 4.69
623 624 3.368843 CCTTAAAACTAGGCGTTACACGG 59.631 47.826 0.00 0.00 42.82 4.94
624 625 4.236935 TCCTTAAAACTAGGCGTTACACG 58.763 43.478 0.00 0.00 45.88 4.49
625 626 5.233225 ACTCCTTAAAACTAGGCGTTACAC 58.767 41.667 0.00 0.00 33.90 2.90
626 627 5.473066 ACTCCTTAAAACTAGGCGTTACA 57.527 39.130 0.00 0.00 33.90 2.41
627 628 5.390251 GCAACTCCTTAAAACTAGGCGTTAC 60.390 44.000 0.00 0.00 38.34 2.50
628 629 4.692155 GCAACTCCTTAAAACTAGGCGTTA 59.308 41.667 0.00 0.00 38.34 3.18
629 630 3.501062 GCAACTCCTTAAAACTAGGCGTT 59.499 43.478 0.00 0.00 40.39 4.84
630 631 3.072211 GCAACTCCTTAAAACTAGGCGT 58.928 45.455 0.00 0.00 32.26 5.68
631 632 3.071479 TGCAACTCCTTAAAACTAGGCG 58.929 45.455 0.00 0.00 32.59 5.52
632 633 4.421033 GTGCAACTCCTTAAAACTAGGC 57.579 45.455 0.00 0.00 32.59 3.93
651 652 0.179100 AGGCGCTGCATAGTGTAGTG 60.179 55.000 7.64 4.55 42.30 2.74
652 653 1.338337 CTAGGCGCTGCATAGTGTAGT 59.662 52.381 7.64 0.00 38.01 2.73
653 654 1.932604 GCTAGGCGCTGCATAGTGTAG 60.933 57.143 18.38 2.25 43.60 2.74
654 655 0.032130 GCTAGGCGCTGCATAGTGTA 59.968 55.000 18.38 0.00 43.60 2.90
655 656 1.227380 GCTAGGCGCTGCATAGTGT 60.227 57.895 18.38 0.00 43.60 3.55
656 657 3.635204 GCTAGGCGCTGCATAGTG 58.365 61.111 18.38 0.00 43.60 2.74
665 666 2.851534 CAACTTTTTACAGCTAGGCGC 58.148 47.619 0.00 0.00 39.57 6.53
666 667 2.225491 TGCAACTTTTTACAGCTAGGCG 59.775 45.455 0.00 0.00 0.00 5.52
667 668 3.004315 TGTGCAACTTTTTACAGCTAGGC 59.996 43.478 0.00 0.00 38.04 3.93
668 669 4.275936 ACTGTGCAACTTTTTACAGCTAGG 59.724 41.667 0.00 0.00 43.18 3.02
669 670 5.424121 ACTGTGCAACTTTTTACAGCTAG 57.576 39.130 0.00 0.00 43.18 3.42
670 671 6.928979 TTACTGTGCAACTTTTTACAGCTA 57.071 33.333 0.00 0.00 43.18 3.32
671 672 5.828299 TTACTGTGCAACTTTTTACAGCT 57.172 34.783 0.00 0.00 43.18 4.24
672 673 6.020678 CACTTTACTGTGCAACTTTTTACAGC 60.021 38.462 0.00 0.00 43.18 4.40
673 674 7.027161 ACACTTTACTGTGCAACTTTTTACAG 58.973 34.615 0.00 0.00 44.52 2.74
674 675 6.915349 ACACTTTACTGTGCAACTTTTTACA 58.085 32.000 0.00 0.00 41.30 2.41
675 676 8.791605 GTTACACTTTACTGTGCAACTTTTTAC 58.208 33.333 0.00 0.00 39.68 2.01
676 677 7.693120 CGTTACACTTTACTGTGCAACTTTTTA 59.307 33.333 8.48 0.00 40.27 1.52
677 678 6.525280 CGTTACACTTTACTGTGCAACTTTTT 59.475 34.615 8.48 0.00 40.27 1.94
678 679 6.025280 CGTTACACTTTACTGTGCAACTTTT 58.975 36.000 8.48 0.00 40.27 2.27
679 680 5.352016 TCGTTACACTTTACTGTGCAACTTT 59.648 36.000 8.48 0.00 40.27 2.66
680 681 4.871557 TCGTTACACTTTACTGTGCAACTT 59.128 37.500 8.48 0.00 40.27 2.66
681 682 4.269363 GTCGTTACACTTTACTGTGCAACT 59.731 41.667 8.48 0.00 40.27 3.16
682 683 4.269363 AGTCGTTACACTTTACTGTGCAAC 59.731 41.667 0.00 0.00 41.30 4.17
683 684 4.435425 AGTCGTTACACTTTACTGTGCAA 58.565 39.130 0.00 0.00 41.30 4.08
684 685 4.049546 AGTCGTTACACTTTACTGTGCA 57.950 40.909 0.00 0.00 41.30 4.57
685 686 5.107722 GGTTAGTCGTTACACTTTACTGTGC 60.108 44.000 0.00 0.00 41.30 4.57
686 687 5.116074 CGGTTAGTCGTTACACTTTACTGTG 59.884 44.000 0.00 0.00 43.07 3.66
687 688 5.215160 CGGTTAGTCGTTACACTTTACTGT 58.785 41.667 0.00 0.00 0.00 3.55
688 689 5.215160 ACGGTTAGTCGTTACACTTTACTG 58.785 41.667 0.00 0.00 40.85 2.74
689 690 5.438761 ACGGTTAGTCGTTACACTTTACT 57.561 39.130 0.00 0.00 40.85 2.24
690 691 5.731256 GACGGTTAGTCGTTACACTTTAC 57.269 43.478 0.00 0.00 43.96 2.01
702 703 1.139095 CAGAGCCCGACGGTTAGTC 59.861 63.158 13.94 3.63 46.16 2.59
703 704 3.003113 GCAGAGCCCGACGGTTAGT 62.003 63.158 13.94 0.00 0.00 2.24
704 705 2.202756 GCAGAGCCCGACGGTTAG 60.203 66.667 13.94 0.00 0.00 2.34
705 706 2.992689 TGCAGAGCCCGACGGTTA 60.993 61.111 13.94 0.00 0.00 2.85
706 707 4.681978 GTGCAGAGCCCGACGGTT 62.682 66.667 13.94 0.00 0.00 4.44
708 709 4.680237 TTGTGCAGAGCCCGACGG 62.680 66.667 6.99 6.99 0.00 4.79
709 710 2.175184 CTTTTGTGCAGAGCCCGACG 62.175 60.000 0.00 0.00 0.00 5.12
710 711 1.576421 CTTTTGTGCAGAGCCCGAC 59.424 57.895 0.00 0.00 0.00 4.79
711 712 1.600636 CCTTTTGTGCAGAGCCCGA 60.601 57.895 0.00 0.00 0.00 5.14
712 713 2.629656 CCCTTTTGTGCAGAGCCCG 61.630 63.158 0.00 0.00 0.00 6.13
713 714 2.935740 GCCCTTTTGTGCAGAGCCC 61.936 63.158 0.00 0.00 0.00 5.19
714 715 2.202395 TGCCCTTTTGTGCAGAGCC 61.202 57.895 0.00 0.00 32.77 4.70
715 716 3.447040 TGCCCTTTTGTGCAGAGC 58.553 55.556 0.00 0.00 32.77 4.09
719 720 1.902918 ATCGCTGCCCTTTTGTGCA 60.903 52.632 0.00 0.00 35.86 4.57
720 721 1.444895 CATCGCTGCCCTTTTGTGC 60.445 57.895 0.00 0.00 0.00 4.57
721 722 0.387622 CACATCGCTGCCCTTTTGTG 60.388 55.000 0.00 0.00 0.00 3.33
722 723 0.537143 TCACATCGCTGCCCTTTTGT 60.537 50.000 0.00 0.00 0.00 2.83
723 724 0.597568 TTCACATCGCTGCCCTTTTG 59.402 50.000 0.00 0.00 0.00 2.44
724 725 1.549203 ATTCACATCGCTGCCCTTTT 58.451 45.000 0.00 0.00 0.00 2.27
725 726 1.549203 AATTCACATCGCTGCCCTTT 58.451 45.000 0.00 0.00 0.00 3.11
726 727 1.549203 AAATTCACATCGCTGCCCTT 58.451 45.000 0.00 0.00 0.00 3.95
727 728 1.549203 AAAATTCACATCGCTGCCCT 58.451 45.000 0.00 0.00 0.00 5.19
728 729 2.368655 AAAAATTCACATCGCTGCCC 57.631 45.000 0.00 0.00 0.00 5.36
770 771 2.224670 TGCCCTCCGTGTGAAAGTATTT 60.225 45.455 0.00 0.00 43.98 1.40
771 772 1.349688 TGCCCTCCGTGTGAAAGTATT 59.650 47.619 0.00 0.00 0.00 1.89
772 773 0.981183 TGCCCTCCGTGTGAAAGTAT 59.019 50.000 0.00 0.00 0.00 2.12
773 774 0.759959 TTGCCCTCCGTGTGAAAGTA 59.240 50.000 0.00 0.00 0.00 2.24
774 775 0.106918 TTTGCCCTCCGTGTGAAAGT 60.107 50.000 0.00 0.00 0.00 2.66
775 776 1.247567 ATTTGCCCTCCGTGTGAAAG 58.752 50.000 0.00 0.00 0.00 2.62
776 777 1.698506 AATTTGCCCTCCGTGTGAAA 58.301 45.000 0.00 0.00 0.00 2.69
777 778 1.339610 CAAATTTGCCCTCCGTGTGAA 59.660 47.619 5.01 0.00 0.00 3.18
778 779 0.958091 CAAATTTGCCCTCCGTGTGA 59.042 50.000 5.01 0.00 0.00 3.58
779 780 0.673437 ACAAATTTGCCCTCCGTGTG 59.327 50.000 18.12 0.00 0.00 3.82
780 781 1.408969 AACAAATTTGCCCTCCGTGT 58.591 45.000 18.12 0.00 0.00 4.49
781 782 3.651803 TTAACAAATTTGCCCTCCGTG 57.348 42.857 18.12 0.00 0.00 4.94
782 783 4.882842 AATTAACAAATTTGCCCTCCGT 57.117 36.364 18.12 0.00 0.00 4.69
783 784 5.925907 CAAAATTAACAAATTTGCCCTCCG 58.074 37.500 18.12 0.00 33.08 4.63
790 791 6.347321 GGTCGAGGGCAAAATTAACAAATTTG 60.347 38.462 16.67 16.67 37.17 2.32
791 792 5.699001 GGTCGAGGGCAAAATTAACAAATTT 59.301 36.000 0.00 0.00 34.09 1.82
792 793 5.234752 GGTCGAGGGCAAAATTAACAAATT 58.765 37.500 0.00 0.00 0.00 1.82
793 794 4.322424 GGGTCGAGGGCAAAATTAACAAAT 60.322 41.667 0.00 0.00 0.00 2.32
794 795 3.006003 GGGTCGAGGGCAAAATTAACAAA 59.994 43.478 0.00 0.00 0.00 2.83
795 796 2.559231 GGGTCGAGGGCAAAATTAACAA 59.441 45.455 0.00 0.00 0.00 2.83
796 797 2.164338 GGGTCGAGGGCAAAATTAACA 58.836 47.619 0.00 0.00 0.00 2.41
797 798 1.131693 CGGGTCGAGGGCAAAATTAAC 59.868 52.381 0.00 0.00 0.00 2.01
798 799 1.271488 ACGGGTCGAGGGCAAAATTAA 60.271 47.619 0.00 0.00 0.00 1.40
799 800 0.325602 ACGGGTCGAGGGCAAAATTA 59.674 50.000 0.00 0.00 0.00 1.40
800 801 1.074248 ACGGGTCGAGGGCAAAATT 59.926 52.632 0.00 0.00 0.00 1.82
801 802 1.674322 CACGGGTCGAGGGCAAAAT 60.674 57.895 0.00 0.00 0.00 1.82
802 803 2.281208 CACGGGTCGAGGGCAAAA 60.281 61.111 0.00 0.00 0.00 2.44
803 804 3.524648 GACACGGGTCGAGGGCAAA 62.525 63.158 0.00 0.00 33.68 3.68
804 805 3.998672 GACACGGGTCGAGGGCAA 61.999 66.667 0.00 0.00 33.68 4.52
812 813 4.410743 GGTCGGTCGACACGGGTC 62.411 72.222 22.35 8.05 46.20 4.46
817 818 0.858961 CGTTATCGGTCGGTCGACAC 60.859 60.000 22.35 7.73 46.20 3.67
888 890 1.193874 GTTTTCTGCTACGGGTTGTCG 59.806 52.381 0.00 0.00 0.00 4.35
925 927 7.904558 AGATTTCTTTCTGGAACTCCTTTTT 57.095 32.000 0.00 0.00 36.82 1.94
987 989 3.845259 GCGGATGGTGGCGTAGGA 61.845 66.667 0.00 0.00 0.00 2.94
1070 1078 3.151906 CCCTAGGGGCCTGATTCG 58.848 66.667 21.44 0.00 35.35 3.34
1083 1091 2.522705 TCTCCCTCTTATTCTGCCCCTA 59.477 50.000 0.00 0.00 0.00 3.53
1089 1097 2.105649 GCCCCTTCTCCCTCTTATTCTG 59.894 54.545 0.00 0.00 0.00 3.02
1110 1120 4.101448 CGGGGAGGGCTGACTTGG 62.101 72.222 0.00 0.00 0.00 3.61
1398 1409 4.473520 AGATGGCCGGCGTCCAAG 62.474 66.667 22.54 0.00 37.13 3.61
1536 1547 3.187637 TGCAACGCTTAATCACCTGTAAC 59.812 43.478 0.00 0.00 0.00 2.50
1650 1661 1.303155 AGCTCTCTTGGCAGCCAAC 60.303 57.895 23.88 13.03 38.75 3.77
1865 1876 1.457346 GCTTACTGCTGAAGTGGCAT 58.543 50.000 0.00 0.00 40.26 4.40
1998 2009 6.682611 GCTTACATTCTGATAGTCTGCACTCT 60.683 42.308 0.00 0.00 33.62 3.24
2010 2021 1.486310 TCGGCTGGCTTACATTCTGAT 59.514 47.619 0.00 0.00 0.00 2.90
2025 2036 1.448922 GAGGCTCGTATCTGTCGGCT 61.449 60.000 0.00 0.00 0.00 5.52
2260 2271 8.835734 ACTATGATTATCCCTGGTATTAATGCA 58.164 33.333 5.87 0.00 0.00 3.96
2370 2381 1.750682 GCCACCACAGAACCAAACTCT 60.751 52.381 0.00 0.00 0.00 3.24
2376 2387 0.396435 CTACAGCCACCACAGAACCA 59.604 55.000 0.00 0.00 0.00 3.67
2500 2511 3.990469 TCACTCTCATTTTCGCTCTCAAC 59.010 43.478 0.00 0.00 0.00 3.18
2501 2512 4.257267 TCACTCTCATTTTCGCTCTCAA 57.743 40.909 0.00 0.00 0.00 3.02
2528 2539 1.589716 GCTGTCCAATGGCACCTCAC 61.590 60.000 0.00 0.00 0.00 3.51
2673 2684 7.365840 CTTCAGAACCACTGGAGTTTTATAC 57.634 40.000 0.71 0.00 44.81 1.47
2689 2700 5.731686 GCTGCATTAAGCCATACTTCAGAAC 60.732 44.000 0.00 0.00 44.83 3.01
2692 2703 3.881688 AGCTGCATTAAGCCATACTTCAG 59.118 43.478 1.02 0.00 44.68 3.02
2694 2705 3.549625 GCAGCTGCATTAAGCCATACTTC 60.550 47.826 33.36 0.00 44.68 3.01
2727 2738 3.381272 GGAGCTTGCTTAATACAATGCCA 59.619 43.478 0.00 0.00 0.00 4.92
2731 2742 6.886459 TGAGAAAGGAGCTTGCTTAATACAAT 59.114 34.615 0.00 0.00 27.86 2.71
2751 2762 1.993956 CACCAACAACCCCATGAGAA 58.006 50.000 0.00 0.00 0.00 2.87
2767 2778 1.079503 GATGACTTCGAACCAGCACC 58.920 55.000 0.00 0.00 0.00 5.01
2789 2800 2.992543 GCTGAAGCTGTGAACTGTAGAG 59.007 50.000 0.00 0.00 38.21 2.43
2791 2802 2.735663 CTGCTGAAGCTGTGAACTGTAG 59.264 50.000 3.61 0.00 42.66 2.74
2838 2849 8.996651 TGGTTCTCTCTACAGATGATATTACA 57.003 34.615 0.00 0.00 0.00 2.41
2862 2873 2.202388 CGCATCGCCAACAAGCTG 60.202 61.111 0.00 0.00 0.00 4.24
2904 2915 0.877743 GGTTGTGCTTCTGCCTCTTC 59.122 55.000 0.00 0.00 38.71 2.87
3084 3095 3.565307 TGTTTGCCTTGTTTCCTCTGAT 58.435 40.909 0.00 0.00 0.00 2.90
3096 3107 1.494960 TTTGGCTCCTTGTTTGCCTT 58.505 45.000 0.00 0.00 46.23 4.35
3226 3237 4.046938 TGGTATGAAAGCTTCGCTCTAG 57.953 45.455 0.00 0.00 38.25 2.43
3358 3373 4.556942 TGTGCAGAAGATCAAACACAAG 57.443 40.909 0.00 0.00 35.28 3.16
3412 3427 9.696917 GGGAATCAATAAATTACTAAAGCATGG 57.303 33.333 0.00 0.00 0.00 3.66
3442 3457 5.423015 TCAGATCTTGTACCAAGCAATCTC 58.577 41.667 0.00 0.00 0.00 2.75
3657 3681 9.294030 CTTGGCTCAAGATTAACAATGAATAAC 57.706 33.333 8.72 0.00 43.42 1.89
4190 4214 6.238320 GCTGATGTCTAAGCATAGTTTTGAGG 60.238 42.308 0.00 0.00 39.31 3.86
4202 4226 4.083110 TGAAGCAAAAGCTGATGTCTAAGC 60.083 41.667 0.00 0.00 39.82 3.09
4227 4251 4.321718 CAGAACTCTGCAAGGAAGAATGA 58.678 43.478 0.00 0.00 37.15 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.