Multiple sequence alignment - TraesCS2B01G366100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G366100 chr2B 100.000 5447 0 0 1 5447 521979264 521973818 0.000000e+00 10059.0
1 TraesCS2B01G366100 chr2B 82.778 2009 319 17 1009 3006 55177855 55179847 0.000000e+00 1768.0
2 TraesCS2B01G366100 chr2A 93.073 3479 202 19 706 4181 585928180 585924738 0.000000e+00 5053.0
3 TraesCS2B01G366100 chr2A 82.707 1995 314 18 1023 3006 36384152 36386126 0.000000e+00 1744.0
4 TraesCS2B01G366100 chr2A 86.561 506 37 10 38 537 585929127 585928647 3.740000e-146 529.0
5 TraesCS2B01G366100 chr2A 88.724 337 16 8 5037 5373 585924042 585923728 5.110000e-105 392.0
6 TraesCS2B01G366100 chr2A 77.907 602 127 6 2625 3223 585927210 585926612 2.400000e-98 370.0
7 TraesCS2B01G366100 chr2A 96.429 196 7 0 4392 4587 585924736 585924541 1.890000e-84 324.0
8 TraesCS2B01G366100 chr2A 80.992 363 37 14 4673 5004 585924400 585924039 5.410000e-65 259.0
9 TraesCS2B01G366100 chr2A 96.503 143 5 0 4248 4390 758586596 758586738 2.540000e-58 237.0
10 TraesCS2B01G366100 chr2D 93.978 2574 144 5 1009 3575 442441837 442439268 0.000000e+00 3884.0
11 TraesCS2B01G366100 chr2D 84.121 2009 301 13 1009 3006 33365013 33367014 0.000000e+00 1927.0
12 TraesCS2B01G366100 chr2D 83.275 1997 306 17 1023 3006 33228320 33230301 0.000000e+00 1812.0
13 TraesCS2B01G366100 chr2D 82.248 2011 303 30 1009 3006 33307760 33309729 0.000000e+00 1687.0
14 TraesCS2B01G366100 chr2D 95.096 1040 43 6 4386 5420 442438708 442437672 0.000000e+00 1631.0
15 TraesCS2B01G366100 chr2D 86.331 1112 135 12 1009 2106 33562157 33563265 0.000000e+00 1195.0
16 TraesCS2B01G366100 chr2D 86.061 1112 138 12 1009 2106 33575957 33577065 0.000000e+00 1179.0
17 TraesCS2B01G366100 chr2D 95.560 563 25 0 3619 4181 442439269 442438707 0.000000e+00 902.0
18 TraesCS2B01G366100 chr2D 90.888 428 35 4 116 540 442442684 442442258 6.120000e-159 571.0
19 TraesCS2B01G366100 chr2D 78.254 630 127 7 2625 3247 442441149 442440523 3.950000e-106 396.0
20 TraesCS2B01G366100 chr6A 79.813 1605 290 21 2315 3905 170521990 170520406 0.000000e+00 1138.0
21 TraesCS2B01G366100 chr4D 96.528 144 5 0 4248 4391 326382590 326382447 7.050000e-59 239.0
22 TraesCS2B01G366100 chr1B 96.528 144 5 0 4248 4391 325812688 325812545 7.050000e-59 239.0
23 TraesCS2B01G366100 chr7D 96.503 143 5 0 4248 4390 397554935 397555077 2.540000e-58 237.0
24 TraesCS2B01G366100 chr7A 96.503 143 5 0 4248 4390 451519953 451519811 2.540000e-58 237.0
25 TraesCS2B01G366100 chr7A 96.552 58 2 0 4180 4237 123271237 123271180 4.490000e-16 97.1
26 TraesCS2B01G366100 chr3A 95.862 145 6 0 4246 4390 534182006 534181862 9.120000e-58 235.0
27 TraesCS2B01G366100 chr3A 96.364 55 2 0 4180 4234 359076594 359076540 2.090000e-14 91.6
28 TraesCS2B01G366100 chr1D 95.833 144 6 0 4248 4391 225704927 225704784 3.280000e-57 233.0
29 TraesCS2B01G366100 chr6B 94.040 151 9 0 4240 4390 128925989 128925839 4.240000e-56 230.0
30 TraesCS2B01G366100 chr6B 94.595 148 8 0 4248 4395 481857870 481858017 4.240000e-56 230.0
31 TraesCS2B01G366100 chr5A 96.429 56 2 0 4179 4234 136398127 136398072 5.810000e-15 93.5
32 TraesCS2B01G366100 chrUn 94.737 57 3 0 4180 4236 85135484 85135428 7.510000e-14 89.8
33 TraesCS2B01G366100 chr6D 94.828 58 2 1 4179 4236 365730101 365730045 7.510000e-14 89.8
34 TraesCS2B01G366100 chr3B 94.737 57 3 0 4180 4236 530257450 530257506 7.510000e-14 89.8
35 TraesCS2B01G366100 chr3B 94.545 55 3 0 4180 4234 243250305 243250359 9.720000e-13 86.1
36 TraesCS2B01G366100 chr4B 92.982 57 4 0 4180 4236 366928421 366928477 3.500000e-12 84.2
37 TraesCS2B01G366100 chr1A 95.918 49 2 0 4188 4236 580659367 580659319 4.520000e-11 80.5
38 TraesCS2B01G366100 chr1A 100.000 30 0 0 4061 4090 516559458 516559487 7.620000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G366100 chr2B 521973818 521979264 5446 True 10059.0 10059 100.0000 1 5447 1 chr2B.!!$R1 5446
1 TraesCS2B01G366100 chr2B 55177855 55179847 1992 False 1768.0 1768 82.7780 1009 3006 1 chr2B.!!$F1 1997
2 TraesCS2B01G366100 chr2A 36384152 36386126 1974 False 1744.0 1744 82.7070 1023 3006 1 chr2A.!!$F1 1983
3 TraesCS2B01G366100 chr2A 585923728 585929127 5399 True 1154.5 5053 87.2810 38 5373 6 chr2A.!!$R1 5335
4 TraesCS2B01G366100 chr2D 33365013 33367014 2001 False 1927.0 1927 84.1210 1009 3006 1 chr2D.!!$F3 1997
5 TraesCS2B01G366100 chr2D 33228320 33230301 1981 False 1812.0 1812 83.2750 1023 3006 1 chr2D.!!$F1 1983
6 TraesCS2B01G366100 chr2D 33307760 33309729 1969 False 1687.0 1687 82.2480 1009 3006 1 chr2D.!!$F2 1997
7 TraesCS2B01G366100 chr2D 442437672 442442684 5012 True 1476.8 3884 90.7552 116 5420 5 chr2D.!!$R1 5304
8 TraesCS2B01G366100 chr2D 33562157 33563265 1108 False 1195.0 1195 86.3310 1009 2106 1 chr2D.!!$F4 1097
9 TraesCS2B01G366100 chr2D 33575957 33577065 1108 False 1179.0 1179 86.0610 1009 2106 1 chr2D.!!$F5 1097
10 TraesCS2B01G366100 chr6A 170520406 170521990 1584 True 1138.0 1138 79.8130 2315 3905 1 chr6A.!!$R1 1590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
413 420 0.177141 TAGTAGATGGCGTGGTTGGC 59.823 55.0 0.00 0.0 0.00 4.52 F
1195 1712 0.233332 GTCAACGACAACAGCTGAGC 59.767 55.0 23.35 0.0 32.09 4.26 F
2721 3242 0.031178 GCTGGCAACCACAGAAACTG 59.969 55.0 0.00 0.0 38.20 3.16 F
3562 4089 0.666274 TTGTGCTTGCTAGACCGACG 60.666 55.0 0.00 0.0 0.00 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2026 2543 0.321653 AGTTAAGGGGAAGCGCTGTG 60.322 55.0 12.58 0.0 0.00 3.66 R
3083 3604 0.041833 TGCTTCTCTCCAGCCCTACT 59.958 55.0 0.00 0.0 36.33 2.57 R
3808 4335 0.394899 GGAAGCAAGGGATCTGGTGG 60.395 60.0 0.00 0.0 0.00 4.61 R
5392 6010 0.976641 CCAACAGAGTCCCTGCAGTA 59.023 55.0 13.81 0.0 46.81 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.833342 ATGCAACACAGAAATTGAAAAGTC 57.167 33.333 0.00 0.00 0.00 3.01
25 26 5.718146 TGCAACACAGAAATTGAAAAGTCA 58.282 33.333 0.00 0.00 0.00 3.41
26 27 6.339730 TGCAACACAGAAATTGAAAAGTCAT 58.660 32.000 0.00 0.00 32.48 3.06
27 28 7.487484 TGCAACACAGAAATTGAAAAGTCATA 58.513 30.769 0.00 0.00 32.48 2.15
28 29 8.143193 TGCAACACAGAAATTGAAAAGTCATAT 58.857 29.630 0.00 0.00 32.48 1.78
29 30 9.624697 GCAACACAGAAATTGAAAAGTCATATA 57.375 29.630 0.00 0.00 32.48 0.86
131 134 7.543756 AGAAAAAGCTTGTAAAACTTGCTACA 58.456 30.769 0.00 0.00 33.28 2.74
215 220 4.138487 AGTGCCCTTGCTTGTAGTATAC 57.862 45.455 0.00 0.00 39.41 1.47
216 221 3.118371 AGTGCCCTTGCTTGTAGTATACC 60.118 47.826 0.00 0.00 38.61 2.73
235 241 2.444388 ACCATCTGTATCCACATGCCAT 59.556 45.455 0.00 0.00 33.14 4.40
263 269 5.710513 TTTTAAGCATCTGCAGTCACATT 57.289 34.783 14.67 6.41 45.16 2.71
268 274 4.715713 AGCATCTGCAGTCACATTGATAT 58.284 39.130 14.67 0.00 45.16 1.63
355 362 5.389520 TCCACTGGTATCAAAATTGGTTCA 58.610 37.500 0.00 0.00 0.00 3.18
413 420 0.177141 TAGTAGATGGCGTGGTTGGC 59.823 55.000 0.00 0.00 0.00 4.52
427 434 1.154197 GTTGGCGGTGAGGTTAACTC 58.846 55.000 5.42 0.00 46.78 3.01
431 438 1.136500 GGCGGTGAGGTTAACTCCTAG 59.864 57.143 5.42 0.00 46.01 3.02
441 448 6.380274 TGAGGTTAACTCCTAGTGAATGTAGG 59.620 42.308 5.42 0.00 46.01 3.18
442 449 6.262207 AGGTTAACTCCTAGTGAATGTAGGT 58.738 40.000 5.42 0.00 38.62 3.08
444 451 6.338937 GTTAACTCCTAGTGAATGTAGGTGG 58.661 44.000 0.00 0.00 38.62 4.61
445 452 4.062490 ACTCCTAGTGAATGTAGGTGGT 57.938 45.455 0.00 0.00 38.62 4.16
542 920 1.206610 CTGATGAGTGGACTGGACCTG 59.793 57.143 0.00 0.00 0.00 4.00
565 943 5.163184 TGTGGTGGAGTTGTAATTGTCCTTA 60.163 40.000 0.00 0.00 0.00 2.69
568 946 7.007723 TGGTGGAGTTGTAATTGTCCTTAATT 58.992 34.615 0.00 0.00 34.78 1.40
569 947 7.507616 TGGTGGAGTTGTAATTGTCCTTAATTT 59.492 33.333 0.00 0.00 32.79 1.82
570 948 7.812669 GGTGGAGTTGTAATTGTCCTTAATTTG 59.187 37.037 0.00 0.00 32.79 2.32
571 949 8.357402 GTGGAGTTGTAATTGTCCTTAATTTGT 58.643 33.333 0.00 0.00 32.79 2.83
572 950 8.919145 TGGAGTTGTAATTGTCCTTAATTTGTT 58.081 29.630 0.00 0.00 32.79 2.83
573 951 9.758651 GGAGTTGTAATTGTCCTTAATTTGTTT 57.241 29.630 0.00 0.00 32.79 2.83
596 974 5.798125 TTTGGCACATTATCTTGAAACCA 57.202 34.783 0.00 0.00 39.30 3.67
597 975 5.798125 TTGGCACATTATCTTGAAACCAA 57.202 34.783 0.00 0.00 39.30 3.67
598 976 5.132897 TGGCACATTATCTTGAAACCAAC 57.867 39.130 0.00 0.00 0.00 3.77
599 977 4.586421 TGGCACATTATCTTGAAACCAACA 59.414 37.500 0.00 0.00 0.00 3.33
600 978 4.923281 GGCACATTATCTTGAAACCAACAC 59.077 41.667 0.00 0.00 0.00 3.32
601 979 5.278957 GGCACATTATCTTGAAACCAACACT 60.279 40.000 0.00 0.00 0.00 3.55
602 980 6.215845 GCACATTATCTTGAAACCAACACTT 58.784 36.000 0.00 0.00 0.00 3.16
603 981 6.701400 GCACATTATCTTGAAACCAACACTTT 59.299 34.615 0.00 0.00 0.00 2.66
604 982 7.865385 GCACATTATCTTGAAACCAACACTTTA 59.135 33.333 0.00 0.00 0.00 1.85
605 983 9.398170 CACATTATCTTGAAACCAACACTTTAG 57.602 33.333 0.00 0.00 0.00 1.85
606 984 8.576442 ACATTATCTTGAAACCAACACTTTAGG 58.424 33.333 0.00 0.00 0.00 2.69
607 985 4.911514 TCTTGAAACCAACACTTTAGGC 57.088 40.909 0.00 0.00 0.00 3.93
608 986 4.274147 TCTTGAAACCAACACTTTAGGCA 58.726 39.130 0.00 0.00 0.00 4.75
609 987 4.707448 TCTTGAAACCAACACTTTAGGCAA 59.293 37.500 0.00 0.00 0.00 4.52
610 988 4.379339 TGAAACCAACACTTTAGGCAAC 57.621 40.909 0.00 0.00 0.00 4.17
611 989 3.131400 TGAAACCAACACTTTAGGCAACC 59.869 43.478 0.00 0.00 37.17 3.77
612 990 2.748209 ACCAACACTTTAGGCAACCT 57.252 45.000 0.00 0.00 37.71 3.50
613 991 2.306847 ACCAACACTTTAGGCAACCTG 58.693 47.619 0.00 0.00 34.61 4.00
614 992 2.306847 CCAACACTTTAGGCAACCTGT 58.693 47.619 0.00 0.00 34.61 4.00
615 993 2.293399 CCAACACTTTAGGCAACCTGTC 59.707 50.000 0.00 0.00 34.61 3.51
616 994 2.948979 CAACACTTTAGGCAACCTGTCA 59.051 45.455 0.00 0.00 34.61 3.58
617 995 3.290948 ACACTTTAGGCAACCTGTCAA 57.709 42.857 0.00 0.00 34.61 3.18
618 996 3.626930 ACACTTTAGGCAACCTGTCAAA 58.373 40.909 0.00 0.00 34.61 2.69
619 997 3.632145 ACACTTTAGGCAACCTGTCAAAG 59.368 43.478 0.00 1.49 34.61 2.77
629 1007 2.656947 CCTGTCAAAGGGTTCCTCAA 57.343 50.000 0.00 0.00 43.15 3.02
630 1008 2.944129 CCTGTCAAAGGGTTCCTCAAA 58.056 47.619 0.00 0.00 43.15 2.69
631 1009 3.295973 CCTGTCAAAGGGTTCCTCAAAA 58.704 45.455 0.00 0.00 43.15 2.44
632 1010 3.319122 CCTGTCAAAGGGTTCCTCAAAAG 59.681 47.826 0.00 0.00 43.15 2.27
633 1011 4.207165 CTGTCAAAGGGTTCCTCAAAAGA 58.793 43.478 0.00 0.00 30.89 2.52
634 1012 4.207165 TGTCAAAGGGTTCCTCAAAAGAG 58.793 43.478 0.00 0.00 30.89 2.85
635 1013 4.080015 TGTCAAAGGGTTCCTCAAAAGAGA 60.080 41.667 0.00 0.00 30.89 3.10
636 1014 4.887655 GTCAAAGGGTTCCTCAAAAGAGAA 59.112 41.667 0.00 0.00 30.89 2.87
637 1015 5.359860 GTCAAAGGGTTCCTCAAAAGAGAAA 59.640 40.000 0.00 0.00 30.89 2.52
638 1016 5.955355 TCAAAGGGTTCCTCAAAAGAGAAAA 59.045 36.000 0.00 0.00 30.89 2.29
639 1017 6.096846 TCAAAGGGTTCCTCAAAAGAGAAAAG 59.903 38.462 0.00 0.00 30.89 2.27
640 1018 5.388599 AGGGTTCCTCAAAAGAGAAAAGA 57.611 39.130 0.00 0.00 0.00 2.52
641 1019 5.380900 AGGGTTCCTCAAAAGAGAAAAGAG 58.619 41.667 0.00 0.00 0.00 2.85
642 1020 5.132816 AGGGTTCCTCAAAAGAGAAAAGAGA 59.867 40.000 0.00 0.00 0.00 3.10
643 1021 5.828328 GGGTTCCTCAAAAGAGAAAAGAGAA 59.172 40.000 0.00 0.00 0.00 2.87
644 1022 6.491745 GGGTTCCTCAAAAGAGAAAAGAGAAT 59.508 38.462 0.00 0.00 0.00 2.40
645 1023 7.366513 GGTTCCTCAAAAGAGAAAAGAGAATG 58.633 38.462 0.00 0.00 0.00 2.67
646 1024 7.013750 GGTTCCTCAAAAGAGAAAAGAGAATGT 59.986 37.037 0.00 0.00 0.00 2.71
647 1025 9.057089 GTTCCTCAAAAGAGAAAAGAGAATGTA 57.943 33.333 0.00 0.00 0.00 2.29
648 1026 9.799106 TTCCTCAAAAGAGAAAAGAGAATGTAT 57.201 29.630 0.00 0.00 0.00 2.29
649 1027 9.442047 TCCTCAAAAGAGAAAAGAGAATGTATC 57.558 33.333 0.00 0.00 0.00 2.24
650 1028 9.224267 CCTCAAAAGAGAAAAGAGAATGTATCA 57.776 33.333 0.00 0.00 0.00 2.15
653 1031 9.837525 CAAAAGAGAAAAGAGAATGTATCAAGG 57.162 33.333 0.00 0.00 0.00 3.61
654 1032 9.799106 AAAAGAGAAAAGAGAATGTATCAAGGA 57.201 29.630 0.00 0.00 0.00 3.36
655 1033 9.972106 AAAGAGAAAAGAGAATGTATCAAGGAT 57.028 29.630 0.00 0.00 0.00 3.24
708 1110 4.899352 AAAGAGAGCAAGATACTGTGGT 57.101 40.909 0.00 0.00 0.00 4.16
726 1128 1.136500 GGTGACTAACCTCCGGTGATC 59.864 57.143 4.76 0.00 46.55 2.92
733 1135 1.326213 ACCTCCGGTGATCTGCAGAG 61.326 60.000 22.96 7.76 32.98 3.35
739 1141 2.271800 CGGTGATCTGCAGAGTTTACC 58.728 52.381 22.96 22.36 0.00 2.85
746 1148 4.207891 TCTGCAGAGTTTACCTGGAATC 57.792 45.455 13.74 0.00 31.69 2.52
750 1152 4.777896 TGCAGAGTTTACCTGGAATCTAGT 59.222 41.667 0.00 0.00 32.51 2.57
751 1153 5.112686 GCAGAGTTTACCTGGAATCTAGTG 58.887 45.833 0.00 0.00 32.51 2.74
754 1156 7.560368 CAGAGTTTACCTGGAATCTAGTGAAT 58.440 38.462 0.00 0.00 0.00 2.57
767 1169 2.664402 AGTGAATTGAACCCTGCTGT 57.336 45.000 0.00 0.00 0.00 4.40
769 1171 2.158623 AGTGAATTGAACCCTGCTGTGA 60.159 45.455 0.00 0.00 0.00 3.58
800 1202 5.296283 GCTTTCTGATCAGTTGAGCACATAT 59.704 40.000 27.16 0.00 35.30 1.78
802 1204 7.518052 GCTTTCTGATCAGTTGAGCACATATAC 60.518 40.741 27.16 8.62 35.30 1.47
803 1205 6.469782 TCTGATCAGTTGAGCACATATACA 57.530 37.500 21.92 0.00 35.30 2.29
817 1219 9.703892 GAGCACATATACATAGAAACTGATCTT 57.296 33.333 0.00 0.00 0.00 2.40
828 1230 6.323203 AGAAACTGATCTTCCACATGTTTG 57.677 37.500 0.00 0.00 0.00 2.93
837 1239 2.455557 TCCACATGTTTGGCCTATTGG 58.544 47.619 3.32 0.90 36.48 3.16
891 1293 9.786105 TGTAACATATGCATTACATTTTGAGTG 57.214 29.630 3.54 0.00 40.38 3.51
892 1294 7.760131 AACATATGCATTACATTTTGAGTGC 57.240 32.000 3.54 0.00 40.38 4.40
893 1295 7.104043 ACATATGCATTACATTTTGAGTGCT 57.896 32.000 3.54 0.00 40.38 4.40
894 1296 8.224389 ACATATGCATTACATTTTGAGTGCTA 57.776 30.769 3.54 0.00 40.38 3.49
895 1297 8.685427 ACATATGCATTACATTTTGAGTGCTAA 58.315 29.630 3.54 0.00 40.38 3.09
896 1298 9.687210 CATATGCATTACATTTTGAGTGCTAAT 57.313 29.630 3.54 0.00 40.38 1.73
900 1302 6.813152 GCATTACATTTTGAGTGCTAATGGTT 59.187 34.615 0.00 0.00 34.40 3.67
904 1306 7.713764 ACATTTTGAGTGCTAATGGTTTTTC 57.286 32.000 0.00 0.00 34.40 2.29
907 1309 7.945033 TTTTGAGTGCTAATGGTTTTTCATC 57.055 32.000 0.00 0.00 0.00 2.92
912 1314 5.539955 AGTGCTAATGGTTTTTCATCTTGGT 59.460 36.000 0.00 0.00 0.00 3.67
985 1388 1.405105 TGGCAAGAAAGTGAGTGTTGC 59.595 47.619 0.00 0.00 42.25 4.17
992 1395 6.677920 GCAAGAAAGTGAGTGTTGCTCTTTTA 60.678 38.462 0.00 0.00 44.41 1.52
1041 1538 4.153296 GCTTCTGTCCTTCTGTTTTAGAGC 59.847 45.833 0.00 0.00 36.61 4.09
1042 1539 4.955811 TCTGTCCTTCTGTTTTAGAGCA 57.044 40.909 0.00 0.00 36.61 4.26
1045 1545 7.187824 TCTGTCCTTCTGTTTTAGAGCATAT 57.812 36.000 0.00 0.00 36.61 1.78
1047 1547 7.550551 TCTGTCCTTCTGTTTTAGAGCATATTG 59.449 37.037 0.00 0.00 36.61 1.90
1193 1710 1.134818 AGTGTCAACGACAACAGCTGA 60.135 47.619 23.35 0.00 44.49 4.26
1195 1712 0.233332 GTCAACGACAACAGCTGAGC 59.767 55.000 23.35 0.00 32.09 4.26
1269 1786 2.612212 GCACCAAATATCAGTACCACCG 59.388 50.000 0.00 0.00 0.00 4.94
1402 1919 5.812127 GGTGTGGAAAAATGCAGGAATATTC 59.188 40.000 6.93 6.93 0.00 1.75
1508 2025 7.201767 GCTATGCCTTGATACAGAAAGTTGATT 60.202 37.037 0.00 0.00 0.00 2.57
1670 2187 6.708502 TGACACGAAACATTTTTCTCATCCTA 59.291 34.615 3.04 0.00 39.29 2.94
1802 2319 8.149973 TCACAACCAAAAGAACTACAAGTATC 57.850 34.615 0.00 0.00 0.00 2.24
1864 2381 1.133253 CGCTGTCATTCCGCTTGTG 59.867 57.895 0.00 0.00 0.00 3.33
1954 2471 5.065218 GGATGACACAATATGGTTCTCACAC 59.935 44.000 0.00 0.00 0.00 3.82
1964 2481 1.069090 TTCTCACACTGCGTCCCAC 59.931 57.895 0.00 0.00 0.00 4.61
2008 2525 1.379642 GCGAAGGCATTCCAGAAGGG 61.380 60.000 5.38 0.00 39.62 3.95
2026 2543 0.106967 GGGCTCTGGAACTTGATCCC 60.107 60.000 0.00 0.00 38.82 3.85
2144 2665 5.595952 GGCTCATCCAGTGGAAATAAATCTT 59.404 40.000 17.71 0.00 34.34 2.40
2154 2675 8.408601 CAGTGGAAATAAATCTTACAAGGGATG 58.591 37.037 0.00 0.00 0.00 3.51
2162 2683 1.207089 CTTACAAGGGATGCGTGAGGA 59.793 52.381 0.00 0.00 0.00 3.71
2171 2692 1.987807 ATGCGTGAGGATTGGGGAGG 61.988 60.000 0.00 0.00 40.13 4.30
2178 2699 1.077716 GGATTGGGGAGGGACAACG 60.078 63.158 0.00 0.00 0.00 4.10
2234 2755 2.492484 ACACCGATGGTAGAGAACAGAC 59.508 50.000 0.00 0.00 32.11 3.51
2240 2761 4.564372 CGATGGTAGAGAACAGACAACATG 59.436 45.833 0.00 0.00 0.00 3.21
2256 2777 4.232221 CAACATGACACTCCATTTTCTGC 58.768 43.478 0.00 0.00 0.00 4.26
2257 2778 2.485426 ACATGACACTCCATTTTCTGCG 59.515 45.455 0.00 0.00 0.00 5.18
2556 3077 2.161609 GTGGACAATTTAGGCGTGGAAG 59.838 50.000 0.00 0.00 0.00 3.46
2715 3236 0.607217 TCAGATGCTGGCAACCACAG 60.607 55.000 0.00 0.00 38.95 3.66
2721 3242 0.031178 GCTGGCAACCACAGAAACTG 59.969 55.000 0.00 0.00 38.20 3.16
2743 3264 6.428159 ACTGTGATTATGAGGTTGTTCAAGTC 59.572 38.462 0.00 0.00 0.00 3.01
2766 3287 4.511454 CGTCTCTGATTTCACAACAGGAAA 59.489 41.667 0.00 0.00 38.49 3.13
2795 3316 3.889196 TCGTCATGCCACTTGTAAAAC 57.111 42.857 0.00 0.00 0.00 2.43
2892 3413 2.031157 GGTTTTCACATTGTGTCCCTCG 60.031 50.000 16.06 0.00 34.79 4.63
2965 3486 1.220206 CGATCCTGCAGCACTTCCT 59.780 57.895 8.66 0.00 0.00 3.36
2975 3496 2.816087 GCAGCACTTCCTCTTCATTTGA 59.184 45.455 0.00 0.00 0.00 2.69
3083 3604 1.965414 TAACTCTGGCAAGGGATCCA 58.035 50.000 15.23 0.00 0.00 3.41
3090 3611 1.149401 GCAAGGGATCCAGTAGGGC 59.851 63.158 15.23 4.24 36.21 5.19
3091 3612 1.348775 GCAAGGGATCCAGTAGGGCT 61.349 60.000 15.23 0.00 36.21 5.19
3126 3647 1.818850 GCGACATGCATGAACACATC 58.181 50.000 32.75 16.98 45.45 3.06
3156 3677 4.416505 CAAAGATGCCAACAGAAGAGAC 57.583 45.455 0.00 0.00 0.00 3.36
3164 3685 3.161067 CCAACAGAAGAGACCAGAGAGA 58.839 50.000 0.00 0.00 0.00 3.10
3184 3705 5.046014 AGAGAATAACACTCCATCTGCTGTT 60.046 40.000 0.00 0.00 35.27 3.16
3202 3723 2.228582 TGTTGAATGTACACATGCTGGC 59.771 45.455 0.00 0.00 36.56 4.85
3219 3740 3.583806 CTGGCGAGGAATCTGATGATAC 58.416 50.000 0.00 0.00 31.70 2.24
3244 3765 2.820787 CCGAGTAGGATATGACTGTCCC 59.179 54.545 5.17 0.00 45.00 4.46
3259 3780 3.444388 ACTGTCCCGATTCAGAGTTCTAC 59.556 47.826 7.46 0.00 35.84 2.59
3559 4086 1.071605 GTCTTGTGCTTGCTAGACCG 58.928 55.000 0.00 0.00 35.99 4.79
3562 4089 0.666274 TTGTGCTTGCTAGACCGACG 60.666 55.000 0.00 0.00 0.00 5.12
3588 4115 5.393742 GCAGAAGAAACGAATATGAAATCGC 59.606 40.000 0.00 0.00 42.61 4.58
3694 4221 3.461085 AGTTGGTGGAGATATTCTGCCAT 59.539 43.478 0.00 0.00 33.54 4.40
3724 4251 1.148157 CCATACGAGTTCGGCTGCTG 61.148 60.000 0.95 0.95 44.95 4.41
3727 4254 1.934220 TACGAGTTCGGCTGCTGAGG 61.934 60.000 11.52 5.47 44.95 3.86
3808 4335 4.027437 AGGATGAGTACCTGAAGTTCTCC 58.973 47.826 4.17 0.00 41.04 3.71
3859 4386 2.124942 GGAGGAGGCAAGCTTCGG 60.125 66.667 0.00 0.00 0.00 4.30
3918 4445 2.630580 AGTTTCTCCTGACTGACTGACC 59.369 50.000 0.00 0.00 0.00 4.02
3923 4450 2.366916 CTCCTGACTGACTGACCTTGTT 59.633 50.000 0.00 0.00 0.00 2.83
3931 4458 2.815503 TGACTGACCTTGTTCATGCATG 59.184 45.455 21.07 21.07 0.00 4.06
3941 4468 1.474077 GTTCATGCATGGTGAACCTCC 59.526 52.381 25.97 0.00 46.03 4.30
4004 4531 1.555075 TGCCTGGAGTTCTCCATGTAC 59.445 52.381 19.96 11.23 39.34 2.90
4024 4551 6.636705 TGTACCAGTGATGTTATTCTGTACC 58.363 40.000 0.00 0.00 0.00 3.34
4092 4619 5.640783 ACTAAAACCACGACACTTATTAGGC 59.359 40.000 0.00 0.00 0.00 3.93
4109 4636 1.669779 AGGCAGTAGTAGTTAGCGACG 59.330 52.381 0.00 0.00 0.00 5.12
4179 4706 3.073650 ACTGCCACTCTTCCTTTTCTCAT 59.926 43.478 0.00 0.00 0.00 2.90
4180 4707 4.287067 ACTGCCACTCTTCCTTTTCTCATA 59.713 41.667 0.00 0.00 0.00 2.15
4181 4708 4.579869 TGCCACTCTTCCTTTTCTCATAC 58.420 43.478 0.00 0.00 0.00 2.39
4182 4709 4.287067 TGCCACTCTTCCTTTTCTCATACT 59.713 41.667 0.00 0.00 0.00 2.12
4183 4710 4.873259 GCCACTCTTCCTTTTCTCATACTC 59.127 45.833 0.00 0.00 0.00 2.59
4184 4711 5.423886 CCACTCTTCCTTTTCTCATACTCC 58.576 45.833 0.00 0.00 0.00 3.85
4185 4712 5.105752 CACTCTTCCTTTTCTCATACTCCG 58.894 45.833 0.00 0.00 0.00 4.63
4186 4713 4.773149 ACTCTTCCTTTTCTCATACTCCGT 59.227 41.667 0.00 0.00 0.00 4.69
4187 4714 5.105675 ACTCTTCCTTTTCTCATACTCCGTC 60.106 44.000 0.00 0.00 0.00 4.79
4188 4715 4.159879 TCTTCCTTTTCTCATACTCCGTCC 59.840 45.833 0.00 0.00 0.00 4.79
4189 4716 2.426024 TCCTTTTCTCATACTCCGTCCG 59.574 50.000 0.00 0.00 0.00 4.79
4190 4717 2.165845 CCTTTTCTCATACTCCGTCCGT 59.834 50.000 0.00 0.00 0.00 4.69
4191 4718 3.368116 CCTTTTCTCATACTCCGTCCGTT 60.368 47.826 0.00 0.00 0.00 4.44
4192 4719 3.498927 TTTCTCATACTCCGTCCGTTC 57.501 47.619 0.00 0.00 0.00 3.95
4193 4720 1.386533 TCTCATACTCCGTCCGTTCC 58.613 55.000 0.00 0.00 0.00 3.62
4194 4721 1.064906 TCTCATACTCCGTCCGTTCCT 60.065 52.381 0.00 0.00 0.00 3.36
4195 4722 2.171237 TCTCATACTCCGTCCGTTCCTA 59.829 50.000 0.00 0.00 0.00 2.94
4196 4723 2.947652 CTCATACTCCGTCCGTTCCTAA 59.052 50.000 0.00 0.00 0.00 2.69
4197 4724 3.355378 TCATACTCCGTCCGTTCCTAAA 58.645 45.455 0.00 0.00 0.00 1.85
4198 4725 3.956199 TCATACTCCGTCCGTTCCTAAAT 59.044 43.478 0.00 0.00 0.00 1.40
4199 4726 5.132502 TCATACTCCGTCCGTTCCTAAATA 58.867 41.667 0.00 0.00 0.00 1.40
4200 4727 3.790152 ACTCCGTCCGTTCCTAAATAC 57.210 47.619 0.00 0.00 0.00 1.89
4201 4728 3.359950 ACTCCGTCCGTTCCTAAATACT 58.640 45.455 0.00 0.00 0.00 2.12
4202 4729 3.379688 ACTCCGTCCGTTCCTAAATACTC 59.620 47.826 0.00 0.00 0.00 2.59
4203 4730 2.689983 TCCGTCCGTTCCTAAATACTCC 59.310 50.000 0.00 0.00 0.00 3.85
4204 4731 2.223900 CCGTCCGTTCCTAAATACTCCC 60.224 54.545 0.00 0.00 0.00 4.30
4205 4732 2.692041 CGTCCGTTCCTAAATACTCCCT 59.308 50.000 0.00 0.00 0.00 4.20
4206 4733 3.243334 CGTCCGTTCCTAAATACTCCCTC 60.243 52.174 0.00 0.00 0.00 4.30
4207 4734 3.959449 GTCCGTTCCTAAATACTCCCTCT 59.041 47.826 0.00 0.00 0.00 3.69
4208 4735 3.958798 TCCGTTCCTAAATACTCCCTCTG 59.041 47.826 0.00 0.00 0.00 3.35
4209 4736 3.705072 CCGTTCCTAAATACTCCCTCTGT 59.295 47.826 0.00 0.00 0.00 3.41
4210 4737 4.891756 CCGTTCCTAAATACTCCCTCTGTA 59.108 45.833 0.00 0.00 0.00 2.74
4211 4738 5.361857 CCGTTCCTAAATACTCCCTCTGTAA 59.638 44.000 0.00 0.00 0.00 2.41
4212 4739 6.127253 CCGTTCCTAAATACTCCCTCTGTAAA 60.127 42.308 0.00 0.00 0.00 2.01
4213 4740 6.755607 CGTTCCTAAATACTCCCTCTGTAAAC 59.244 42.308 0.00 0.00 0.00 2.01
4214 4741 7.363617 CGTTCCTAAATACTCCCTCTGTAAACT 60.364 40.741 0.00 0.00 0.00 2.66
4215 4742 7.419711 TCCTAAATACTCCCTCTGTAAACTG 57.580 40.000 0.00 0.00 0.00 3.16
4216 4743 7.186972 TCCTAAATACTCCCTCTGTAAACTGA 58.813 38.462 0.00 0.00 0.00 3.41
4217 4744 7.844779 TCCTAAATACTCCCTCTGTAAACTGAT 59.155 37.037 0.00 0.00 0.00 2.90
4218 4745 9.144298 CCTAAATACTCCCTCTGTAAACTGATA 57.856 37.037 0.00 0.00 0.00 2.15
4224 4751 8.472007 ACTCCCTCTGTAAACTGATATAAGAG 57.528 38.462 0.00 0.00 0.00 2.85
4225 4752 7.014808 ACTCCCTCTGTAAACTGATATAAGAGC 59.985 40.741 0.00 0.00 0.00 4.09
4226 4753 6.016192 TCCCTCTGTAAACTGATATAAGAGCG 60.016 42.308 0.00 0.00 0.00 5.03
4227 4754 6.239064 CCCTCTGTAAACTGATATAAGAGCGT 60.239 42.308 0.00 0.00 0.00 5.07
4228 4755 7.203910 CCTCTGTAAACTGATATAAGAGCGTT 58.796 38.462 0.00 0.00 0.00 4.84
4229 4756 7.707035 CCTCTGTAAACTGATATAAGAGCGTTT 59.293 37.037 0.00 0.00 0.00 3.60
4230 4757 9.731819 CTCTGTAAACTGATATAAGAGCGTTTA 57.268 33.333 0.00 0.00 0.00 2.01
4231 4758 9.731819 TCTGTAAACTGATATAAGAGCGTTTAG 57.268 33.333 0.00 0.00 29.54 1.85
4232 4759 9.731819 CTGTAAACTGATATAAGAGCGTTTAGA 57.268 33.333 0.00 0.00 29.54 2.10
4236 4763 9.988815 AAACTGATATAAGAGCGTTTAGATCAT 57.011 29.630 15.87 5.28 39.29 2.45
4243 4770 5.398603 AGAGCGTTTAGATCATATGGAGG 57.601 43.478 2.13 0.00 37.82 4.30
4244 4771 4.221703 AGAGCGTTTAGATCATATGGAGGG 59.778 45.833 2.13 0.00 37.82 4.30
4245 4772 4.160329 AGCGTTTAGATCATATGGAGGGA 58.840 43.478 2.13 0.00 0.00 4.20
4246 4773 4.221703 AGCGTTTAGATCATATGGAGGGAG 59.778 45.833 2.13 0.00 0.00 4.30
4247 4774 4.021016 GCGTTTAGATCATATGGAGGGAGT 60.021 45.833 2.13 0.00 0.00 3.85
4248 4775 5.185249 GCGTTTAGATCATATGGAGGGAGTA 59.815 44.000 2.13 0.00 0.00 2.59
4249 4776 6.127310 GCGTTTAGATCATATGGAGGGAGTAT 60.127 42.308 2.13 0.00 0.00 2.12
4250 4777 7.068348 GCGTTTAGATCATATGGAGGGAGTATA 59.932 40.741 2.13 0.00 0.00 1.47
4251 4778 8.967918 CGTTTAGATCATATGGAGGGAGTATAA 58.032 37.037 2.13 0.00 0.00 0.98
4254 4781 9.702253 TTAGATCATATGGAGGGAGTATAAGTC 57.298 37.037 2.13 0.00 0.00 3.01
4255 4782 7.949696 AGATCATATGGAGGGAGTATAAGTCT 58.050 38.462 2.13 0.00 0.00 3.24
4256 4783 8.405850 AGATCATATGGAGGGAGTATAAGTCTT 58.594 37.037 2.13 0.00 0.00 3.01
4257 4784 8.980832 ATCATATGGAGGGAGTATAAGTCTTT 57.019 34.615 2.13 0.00 0.00 2.52
4258 4785 8.798975 TCATATGGAGGGAGTATAAGTCTTTT 57.201 34.615 2.13 0.00 0.00 2.27
4259 4786 9.225682 TCATATGGAGGGAGTATAAGTCTTTTT 57.774 33.333 2.13 0.00 0.00 1.94
4262 4789 8.855804 ATGGAGGGAGTATAAGTCTTTTTAGA 57.144 34.615 0.00 0.00 0.00 2.10
4263 4790 8.307582 TGGAGGGAGTATAAGTCTTTTTAGAG 57.692 38.462 0.00 0.00 0.00 2.43
4264 4791 8.120538 TGGAGGGAGTATAAGTCTTTTTAGAGA 58.879 37.037 0.00 0.00 0.00 3.10
4265 4792 9.150028 GGAGGGAGTATAAGTCTTTTTAGAGAT 57.850 37.037 0.00 0.00 0.00 2.75
4286 4813 9.179909 AGAGATTCTAATATGGACTACATACGG 57.820 37.037 0.00 0.00 44.41 4.02
4287 4814 9.175312 GAGATTCTAATATGGACTACATACGGA 57.825 37.037 0.00 0.00 44.41 4.69
4288 4815 9.179909 AGATTCTAATATGGACTACATACGGAG 57.820 37.037 0.00 0.00 44.41 4.63
4289 4816 6.754702 TCTAATATGGACTACATACGGAGC 57.245 41.667 0.00 0.00 44.41 4.70
4290 4817 6.243148 TCTAATATGGACTACATACGGAGCA 58.757 40.000 0.00 0.00 44.41 4.26
4291 4818 5.801531 AATATGGACTACATACGGAGCAA 57.198 39.130 0.00 0.00 44.41 3.91
4292 4819 5.801531 ATATGGACTACATACGGAGCAAA 57.198 39.130 0.00 0.00 44.41 3.68
4293 4820 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
4294 4821 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
4295 4822 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
4296 4823 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
4297 4824 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
4298 4825 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4299 4826 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4300 4827 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4301 4828 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4302 4829 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4303 4830 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4304 4831 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4305 4832 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4306 4833 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
4307 4834 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
4308 4835 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
4320 4847 7.684937 AGTGAATCTACACTCTAAACTACGT 57.315 36.000 0.00 0.00 46.36 3.57
4321 4848 7.750769 AGTGAATCTACACTCTAAACTACGTC 58.249 38.462 0.00 0.00 46.36 4.34
4322 4849 7.607223 AGTGAATCTACACTCTAAACTACGTCT 59.393 37.037 0.00 0.00 46.36 4.18
4323 4850 8.877779 GTGAATCTACACTCTAAACTACGTCTA 58.122 37.037 0.00 0.00 37.73 2.59
4324 4851 9.610705 TGAATCTACACTCTAAACTACGTCTAT 57.389 33.333 0.00 0.00 0.00 1.98
4333 4860 9.149225 ACTCTAAACTACGTCTATATACATCCG 57.851 37.037 0.00 0.00 0.00 4.18
4334 4861 9.149225 CTCTAAACTACGTCTATATACATCCGT 57.851 37.037 0.00 0.00 0.00 4.69
4350 4877 6.911250 ACATCCGTATGTAGTCCATATTGA 57.089 37.500 0.00 0.00 44.66 2.57
4351 4878 7.297936 ACATCCGTATGTAGTCCATATTGAA 57.702 36.000 0.00 0.00 44.66 2.69
4352 4879 7.732025 ACATCCGTATGTAGTCCATATTGAAA 58.268 34.615 0.00 0.00 44.66 2.69
4353 4880 8.375506 ACATCCGTATGTAGTCCATATTGAAAT 58.624 33.333 0.00 0.00 44.66 2.17
4354 4881 8.873830 CATCCGTATGTAGTCCATATTGAAATC 58.126 37.037 0.00 0.00 38.29 2.17
4355 4882 8.190326 TCCGTATGTAGTCCATATTGAAATCT 57.810 34.615 0.00 0.00 38.29 2.40
4356 4883 8.304596 TCCGTATGTAGTCCATATTGAAATCTC 58.695 37.037 0.00 0.00 38.29 2.75
4357 4884 8.307483 CCGTATGTAGTCCATATTGAAATCTCT 58.693 37.037 0.00 0.00 38.29 3.10
4738 5320 3.890756 TGCACAGATGTCACCATTTTCTT 59.109 39.130 0.00 0.00 0.00 2.52
4745 5327 7.156673 CAGATGTCACCATTTTCTTGGAAAAT 58.843 34.615 11.10 11.10 39.25 1.82
4776 5359 1.035932 CCCAAGCTGAATCAGGCCTG 61.036 60.000 27.87 27.87 31.21 4.85
4777 5360 0.323178 CCAAGCTGAATCAGGCCTGT 60.323 55.000 31.58 14.66 31.21 4.00
4778 5361 1.065199 CCAAGCTGAATCAGGCCTGTA 60.065 52.381 31.58 18.83 31.21 2.74
4808 5391 2.558359 GCATAGAAAAATGCGGGGCTAT 59.442 45.455 0.00 0.00 42.57 2.97
4846 5460 7.661847 AGATTAAGCCTGGCACATAGTATAAAC 59.338 37.037 22.65 5.77 38.20 2.01
4948 5564 2.930040 CCACCAGATCGTGTGACATTAC 59.070 50.000 16.34 0.00 34.37 1.89
5059 5677 6.459298 GCAAATGTATCCATGAACTGAAGGAG 60.459 42.308 0.00 0.00 32.91 3.69
5200 5818 4.868171 TCCTTATCACTTTTCCATTCGACG 59.132 41.667 0.00 0.00 0.00 5.12
5205 5823 1.270625 ACTTTTCCATTCGACGCCAGA 60.271 47.619 0.00 0.00 0.00 3.86
5220 5838 6.429078 TCGACGCCAGACTAATATAACTACAT 59.571 38.462 0.00 0.00 0.00 2.29
5299 5917 5.704515 AGATTCAGCCATGGAAGATAATTCG 59.295 40.000 18.40 0.00 0.00 3.34
5319 5937 1.070786 GTTGAGACGGCCTGGACAA 59.929 57.895 0.00 0.00 0.00 3.18
5337 5955 5.105957 TGGACAATTGAATATCAACAACGGG 60.106 40.000 13.59 0.00 39.45 5.28
5378 5996 2.482326 GGCACTACAATGGAGCCAC 58.518 57.895 0.00 0.00 44.59 5.01
5388 6006 0.908198 ATGGAGCCACACTCTTCCTC 59.092 55.000 0.00 0.00 45.48 3.71
5389 6007 1.194781 TGGAGCCACACTCTTCCTCC 61.195 60.000 0.00 0.00 45.48 4.30
5391 6009 2.232298 GAGCCACACTCTTCCTCCGG 62.232 65.000 0.00 0.00 42.62 5.14
5392 6010 2.584391 GCCACACTCTTCCTCCGGT 61.584 63.158 0.00 0.00 0.00 5.28
5420 6038 3.264450 AGGGACTCTGTTGGTGAATAAGG 59.736 47.826 0.00 0.00 0.00 2.69
5421 6039 3.610911 GGACTCTGTTGGTGAATAAGGG 58.389 50.000 0.00 0.00 0.00 3.95
5422 6040 3.263425 GGACTCTGTTGGTGAATAAGGGA 59.737 47.826 0.00 0.00 0.00 4.20
5423 6041 4.508662 GACTCTGTTGGTGAATAAGGGAG 58.491 47.826 0.00 0.00 0.00 4.30
5424 6042 3.910627 ACTCTGTTGGTGAATAAGGGAGT 59.089 43.478 0.00 0.00 0.00 3.85
5425 6043 4.256920 CTCTGTTGGTGAATAAGGGAGTG 58.743 47.826 0.00 0.00 0.00 3.51
5426 6044 3.650942 TCTGTTGGTGAATAAGGGAGTGT 59.349 43.478 0.00 0.00 0.00 3.55
5427 6045 4.104102 TCTGTTGGTGAATAAGGGAGTGTT 59.896 41.667 0.00 0.00 0.00 3.32
5428 6046 4.394729 TGTTGGTGAATAAGGGAGTGTTC 58.605 43.478 0.00 0.00 0.00 3.18
5429 6047 3.328382 TGGTGAATAAGGGAGTGTTCG 57.672 47.619 0.00 0.00 0.00 3.95
5430 6048 2.901192 TGGTGAATAAGGGAGTGTTCGA 59.099 45.455 0.00 0.00 0.00 3.71
5431 6049 3.325425 TGGTGAATAAGGGAGTGTTCGAA 59.675 43.478 0.00 0.00 0.00 3.71
5432 6050 3.933332 GGTGAATAAGGGAGTGTTCGAAG 59.067 47.826 0.00 0.00 0.00 3.79
5433 6051 4.562963 GGTGAATAAGGGAGTGTTCGAAGT 60.563 45.833 0.00 0.00 0.00 3.01
5434 6052 4.626172 GTGAATAAGGGAGTGTTCGAAGTC 59.374 45.833 0.00 0.00 0.00 3.01
5435 6053 3.889520 ATAAGGGAGTGTTCGAAGTCC 57.110 47.619 0.00 5.30 38.73 3.85
5438 6056 3.816580 GGAGTGTTCGAAGTCCCTC 57.183 57.895 0.00 1.48 34.07 4.30
5439 6057 0.246910 GGAGTGTTCGAAGTCCCTCC 59.753 60.000 13.44 13.44 34.07 4.30
5440 6058 0.109226 GAGTGTTCGAAGTCCCTCCG 60.109 60.000 0.00 0.00 0.00 4.63
5441 6059 1.737008 GTGTTCGAAGTCCCTCCGC 60.737 63.158 0.00 0.00 0.00 5.54
5442 6060 1.906824 TGTTCGAAGTCCCTCCGCT 60.907 57.895 0.00 0.00 0.00 5.52
5443 6061 1.292541 GTTCGAAGTCCCTCCGCTT 59.707 57.895 0.00 0.00 0.00 4.68
5444 6062 0.736672 GTTCGAAGTCCCTCCGCTTC 60.737 60.000 0.00 0.00 38.11 3.86
5445 6063 1.885163 TTCGAAGTCCCTCCGCTTCC 61.885 60.000 0.00 0.00 38.20 3.46
5446 6064 2.646175 CGAAGTCCCTCCGCTTCCA 61.646 63.158 0.00 0.00 38.20 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.487484 TGACTTTTCAATTTCTGTGTTGCATA 58.513 30.769 0.00 0.00 0.00 3.14
1 2 6.339730 TGACTTTTCAATTTCTGTGTTGCAT 58.660 32.000 0.00 0.00 0.00 3.96
2 3 5.718146 TGACTTTTCAATTTCTGTGTTGCA 58.282 33.333 0.00 0.00 0.00 4.08
3 4 6.833342 ATGACTTTTCAATTTCTGTGTTGC 57.167 33.333 0.00 0.00 34.61 4.17
68 69 7.218228 ACAATGAAGCATAACATTTCACAGA 57.782 32.000 0.00 0.00 35.01 3.41
120 123 7.223387 CAGAAGCAAATCTTTTGTAGCAAGTTT 59.777 33.333 2.32 0.00 34.56 2.66
164 167 6.019801 GTGGTACATAGACGAATTAAGTGCAG 60.020 42.308 0.00 0.00 44.52 4.41
166 169 5.808540 TGTGGTACATAGACGAATTAAGTGC 59.191 40.000 0.00 0.00 44.52 4.40
167 170 7.921214 AGATGTGGTACATAGACGAATTAAGTG 59.079 37.037 0.00 0.00 44.52 3.16
168 171 8.008513 AGATGTGGTACATAGACGAATTAAGT 57.991 34.615 0.00 0.00 44.52 2.24
235 241 5.301551 TGACTGCAGATGCTTAAAAAGGAAA 59.698 36.000 23.35 0.00 42.66 3.13
330 336 7.122055 GTGAACCAATTTTGATACCAGTGGATA 59.878 37.037 18.40 5.00 0.00 2.59
355 362 4.189231 GCTTTATGTCATACGGGTTGAGT 58.811 43.478 0.00 0.00 0.00 3.41
394 401 0.177141 GCCAACCACGCCATCTACTA 59.823 55.000 0.00 0.00 0.00 1.82
413 420 3.087031 TCACTAGGAGTTAACCTCACCG 58.913 50.000 0.88 0.00 42.40 4.94
427 434 2.420129 GCCACCACCTACATTCACTAGG 60.420 54.545 0.00 0.00 37.40 3.02
431 438 0.037590 TGGCCACCACCTACATTCAC 59.962 55.000 0.00 0.00 0.00 3.18
455 462 4.489306 AAAGCTACTAATCACCTCCACC 57.511 45.455 0.00 0.00 0.00 4.61
456 463 6.097129 ACTCTAAAGCTACTAATCACCTCCAC 59.903 42.308 0.00 0.00 0.00 4.02
537 544 2.922740 TTACAACTCCACCACAGGTC 57.077 50.000 0.00 0.00 31.02 3.85
542 920 3.751518 AGGACAATTACAACTCCACCAC 58.248 45.455 0.00 0.00 0.00 4.16
572 950 6.586344 TGGTTTCAAGATAATGTGCCAAAAA 58.414 32.000 0.00 0.00 0.00 1.94
573 951 6.166984 TGGTTTCAAGATAATGTGCCAAAA 57.833 33.333 0.00 0.00 0.00 2.44
574 952 5.798125 TGGTTTCAAGATAATGTGCCAAA 57.202 34.783 0.00 0.00 0.00 3.28
575 953 5.069648 TGTTGGTTTCAAGATAATGTGCCAA 59.930 36.000 0.00 0.00 32.92 4.52
576 954 4.586421 TGTTGGTTTCAAGATAATGTGCCA 59.414 37.500 0.00 0.00 32.92 4.92
577 955 4.923281 GTGTTGGTTTCAAGATAATGTGCC 59.077 41.667 0.00 0.00 32.92 5.01
578 956 5.772521 AGTGTTGGTTTCAAGATAATGTGC 58.227 37.500 0.00 0.00 32.92 4.57
579 957 9.398170 CTAAAGTGTTGGTTTCAAGATAATGTG 57.602 33.333 0.00 0.00 32.92 3.21
580 958 8.576442 CCTAAAGTGTTGGTTTCAAGATAATGT 58.424 33.333 0.00 0.00 32.92 2.71
581 959 7.542130 GCCTAAAGTGTTGGTTTCAAGATAATG 59.458 37.037 0.00 0.00 32.92 1.90
582 960 7.232534 TGCCTAAAGTGTTGGTTTCAAGATAAT 59.767 33.333 0.00 0.00 32.92 1.28
583 961 6.547880 TGCCTAAAGTGTTGGTTTCAAGATAA 59.452 34.615 0.00 0.00 32.92 1.75
584 962 6.065374 TGCCTAAAGTGTTGGTTTCAAGATA 58.935 36.000 0.00 0.00 32.92 1.98
585 963 4.892934 TGCCTAAAGTGTTGGTTTCAAGAT 59.107 37.500 0.00 0.00 32.92 2.40
586 964 4.274147 TGCCTAAAGTGTTGGTTTCAAGA 58.726 39.130 0.00 0.00 32.92 3.02
587 965 4.647424 TGCCTAAAGTGTTGGTTTCAAG 57.353 40.909 0.00 0.00 32.92 3.02
588 966 4.382147 GGTTGCCTAAAGTGTTGGTTTCAA 60.382 41.667 0.00 0.00 0.00 2.69
589 967 3.131400 GGTTGCCTAAAGTGTTGGTTTCA 59.869 43.478 0.00 0.00 0.00 2.69
590 968 3.383505 AGGTTGCCTAAAGTGTTGGTTTC 59.616 43.478 0.00 0.00 28.47 2.78
591 969 3.132111 CAGGTTGCCTAAAGTGTTGGTTT 59.868 43.478 0.00 0.00 29.64 3.27
592 970 2.693074 CAGGTTGCCTAAAGTGTTGGTT 59.307 45.455 0.00 0.00 29.64 3.67
593 971 2.306847 CAGGTTGCCTAAAGTGTTGGT 58.693 47.619 0.00 0.00 29.64 3.67
594 972 2.293399 GACAGGTTGCCTAAAGTGTTGG 59.707 50.000 0.00 0.00 29.64 3.77
595 973 2.948979 TGACAGGTTGCCTAAAGTGTTG 59.051 45.455 0.00 0.00 29.64 3.33
596 974 3.290948 TGACAGGTTGCCTAAAGTGTT 57.709 42.857 0.00 0.00 29.64 3.32
597 975 3.290948 TTGACAGGTTGCCTAAAGTGT 57.709 42.857 0.00 0.00 29.64 3.55
598 976 3.004734 CCTTTGACAGGTTGCCTAAAGTG 59.995 47.826 7.65 0.00 37.99 3.16
599 977 3.222603 CCTTTGACAGGTTGCCTAAAGT 58.777 45.455 7.65 0.00 37.99 2.66
600 978 2.558359 CCCTTTGACAGGTTGCCTAAAG 59.442 50.000 0.00 0.00 42.02 1.85
601 979 2.091555 ACCCTTTGACAGGTTGCCTAAA 60.092 45.455 0.00 0.00 42.02 1.85
602 980 1.497286 ACCCTTTGACAGGTTGCCTAA 59.503 47.619 0.00 0.00 42.02 2.69
603 981 1.145571 ACCCTTTGACAGGTTGCCTA 58.854 50.000 0.00 0.00 42.02 3.93
604 982 0.261696 AACCCTTTGACAGGTTGCCT 59.738 50.000 0.00 0.00 44.70 4.75
605 983 0.673985 GAACCCTTTGACAGGTTGCC 59.326 55.000 2.50 0.00 46.38 4.52
606 984 0.673985 GGAACCCTTTGACAGGTTGC 59.326 55.000 2.50 2.06 46.38 4.17
607 985 2.230660 GAGGAACCCTTTGACAGGTTG 58.769 52.381 2.50 0.00 46.38 3.77
609 987 1.518367 TGAGGAACCCTTTGACAGGT 58.482 50.000 0.00 0.00 42.02 4.00
610 988 2.656947 TTGAGGAACCCTTTGACAGG 57.343 50.000 0.00 0.00 43.49 4.00
611 989 4.207165 TCTTTTGAGGAACCCTTTGACAG 58.793 43.478 0.00 0.00 31.76 3.51
612 990 4.080015 TCTCTTTTGAGGAACCCTTTGACA 60.080 41.667 0.00 0.00 46.22 3.58
613 991 4.461198 TCTCTTTTGAGGAACCCTTTGAC 58.539 43.478 0.00 0.00 46.22 3.18
614 992 4.788925 TCTCTTTTGAGGAACCCTTTGA 57.211 40.909 0.00 0.00 46.22 2.69
615 993 5.852282 TTTCTCTTTTGAGGAACCCTTTG 57.148 39.130 0.00 0.00 46.22 2.77
616 994 6.194967 TCTTTTCTCTTTTGAGGAACCCTTT 58.805 36.000 0.00 0.00 43.34 3.11
617 995 5.766590 TCTTTTCTCTTTTGAGGAACCCTT 58.233 37.500 0.00 0.00 43.34 3.95
618 996 5.132816 TCTCTTTTCTCTTTTGAGGAACCCT 59.867 40.000 0.00 0.00 43.34 4.34
619 997 5.377478 TCTCTTTTCTCTTTTGAGGAACCC 58.623 41.667 0.00 0.00 43.34 4.11
620 998 6.944234 TTCTCTTTTCTCTTTTGAGGAACC 57.056 37.500 0.00 0.00 43.34 3.62
621 999 7.935520 ACATTCTCTTTTCTCTTTTGAGGAAC 58.064 34.615 0.00 0.00 43.34 3.62
622 1000 9.799106 ATACATTCTCTTTTCTCTTTTGAGGAA 57.201 29.630 0.00 0.00 46.22 3.36
623 1001 9.442047 GATACATTCTCTTTTCTCTTTTGAGGA 57.558 33.333 0.00 0.00 46.22 3.71
624 1002 9.224267 TGATACATTCTCTTTTCTCTTTTGAGG 57.776 33.333 0.00 0.00 46.22 3.86
627 1005 9.837525 CCTTGATACATTCTCTTTTCTCTTTTG 57.162 33.333 0.00 0.00 0.00 2.44
628 1006 9.799106 TCCTTGATACATTCTCTTTTCTCTTTT 57.201 29.630 0.00 0.00 0.00 2.27
629 1007 9.972106 ATCCTTGATACATTCTCTTTTCTCTTT 57.028 29.630 0.00 0.00 0.00 2.52
687 1065 4.284490 TCACCACAGTATCTTGCTCTCTTT 59.716 41.667 0.00 0.00 0.00 2.52
688 1066 3.834813 TCACCACAGTATCTTGCTCTCTT 59.165 43.478 0.00 0.00 0.00 2.85
693 1071 4.322801 GGTTAGTCACCACAGTATCTTGCT 60.323 45.833 0.00 0.00 46.42 3.91
694 1072 3.933332 GGTTAGTCACCACAGTATCTTGC 59.067 47.826 0.00 0.00 46.42 4.01
720 1122 3.265791 CAGGTAAACTCTGCAGATCACC 58.734 50.000 18.63 19.76 0.00 4.02
726 1128 4.213564 AGATTCCAGGTAAACTCTGCAG 57.786 45.455 7.63 7.63 0.00 4.41
733 1135 8.451748 GTTCAATTCACTAGATTCCAGGTAAAC 58.548 37.037 0.00 0.00 0.00 2.01
739 1141 5.587844 CAGGGTTCAATTCACTAGATTCCAG 59.412 44.000 0.00 0.00 0.00 3.86
746 1148 3.438087 CACAGCAGGGTTCAATTCACTAG 59.562 47.826 0.00 0.00 0.00 2.57
750 1152 2.507484 CTCACAGCAGGGTTCAATTCA 58.493 47.619 0.00 0.00 0.00 2.57
751 1153 1.815003 CCTCACAGCAGGGTTCAATTC 59.185 52.381 0.00 0.00 0.00 2.17
767 1169 2.235650 CTGATCAGAAAGCACTCCCTCA 59.764 50.000 18.34 0.00 0.00 3.86
769 1171 2.264455 ACTGATCAGAAAGCACTCCCT 58.736 47.619 29.27 0.00 0.00 4.20
800 1202 7.851228 ACATGTGGAAGATCAGTTTCTATGTA 58.149 34.615 0.00 0.00 30.15 2.29
802 1204 7.621428 AACATGTGGAAGATCAGTTTCTATG 57.379 36.000 0.00 1.04 0.00 2.23
803 1205 7.121759 CCAAACATGTGGAAGATCAGTTTCTAT 59.878 37.037 0.00 0.00 41.65 1.98
817 1219 2.455557 CCAATAGGCCAAACATGTGGA 58.544 47.619 5.01 0.00 41.65 4.02
837 1239 8.614469 ATCTATTTAGGCTTCATAAGACAAGC 57.386 34.615 0.00 0.00 43.72 4.01
867 1269 8.685427 AGCACTCAAAATGTAATGCATATGTTA 58.315 29.630 0.00 0.00 36.67 2.41
876 1278 8.761575 AAACCATTAGCACTCAAAATGTAATG 57.238 30.769 0.00 0.00 0.00 1.90
878 1280 9.255304 GAAAAACCATTAGCACTCAAAATGTAA 57.745 29.630 0.00 0.00 0.00 2.41
879 1281 8.417106 TGAAAAACCATTAGCACTCAAAATGTA 58.583 29.630 0.00 0.00 0.00 2.29
881 1283 7.712264 TGAAAAACCATTAGCACTCAAAATG 57.288 32.000 0.00 0.00 0.00 2.32
882 1284 8.370182 AGATGAAAAACCATTAGCACTCAAAAT 58.630 29.630 0.00 0.00 0.00 1.82
883 1285 7.725251 AGATGAAAAACCATTAGCACTCAAAA 58.275 30.769 0.00 0.00 0.00 2.44
884 1286 7.288810 AGATGAAAAACCATTAGCACTCAAA 57.711 32.000 0.00 0.00 0.00 2.69
885 1287 6.899393 AGATGAAAAACCATTAGCACTCAA 57.101 33.333 0.00 0.00 0.00 3.02
886 1288 6.294675 CCAAGATGAAAAACCATTAGCACTCA 60.295 38.462 0.00 0.00 0.00 3.41
887 1289 6.095377 CCAAGATGAAAAACCATTAGCACTC 58.905 40.000 0.00 0.00 0.00 3.51
888 1290 5.539955 ACCAAGATGAAAAACCATTAGCACT 59.460 36.000 0.00 0.00 0.00 4.40
889 1291 5.783111 ACCAAGATGAAAAACCATTAGCAC 58.217 37.500 0.00 0.00 0.00 4.40
890 1292 7.014711 TGTTACCAAGATGAAAAACCATTAGCA 59.985 33.333 0.00 0.00 0.00 3.49
891 1293 7.375053 TGTTACCAAGATGAAAAACCATTAGC 58.625 34.615 0.00 0.00 0.00 3.09
892 1294 9.927668 ATTGTTACCAAGATGAAAAACCATTAG 57.072 29.630 0.00 0.00 33.17 1.73
894 1296 9.927668 CTATTGTTACCAAGATGAAAAACCATT 57.072 29.630 0.00 0.00 33.17 3.16
895 1297 8.034804 GCTATTGTTACCAAGATGAAAAACCAT 58.965 33.333 0.00 0.00 33.17 3.55
896 1298 7.232534 AGCTATTGTTACCAAGATGAAAAACCA 59.767 33.333 0.00 0.00 33.17 3.67
959 1362 2.039084 ACTCACTTTCTTGCCACCCTAG 59.961 50.000 0.00 0.00 0.00 3.02
1171 1685 0.229753 GCTGTTGTCGTTGACACTCG 59.770 55.000 0.00 0.00 42.60 4.18
1193 1710 1.227943 TTGCAGAGTTTGAGCCGCT 60.228 52.632 0.00 0.00 0.00 5.52
1195 1712 1.871772 CCTTGCAGAGTTTGAGCCG 59.128 57.895 0.00 0.00 0.00 5.52
1269 1786 6.519419 GCGGACAAATTTCATTAAAATTGCAC 59.481 34.615 0.99 0.00 44.88 4.57
1402 1919 6.756074 ACTTCTGAAGCGATCTAATTTCTGAG 59.244 38.462 17.00 0.00 31.94 3.35
1450 1967 6.692486 ACACTTATCTTTGTCACTGTAGAGG 58.308 40.000 0.00 0.00 0.00 3.69
1508 2025 8.845227 TCTTGCATGTACTTTATTGTTCTTGAA 58.155 29.630 0.00 0.00 0.00 2.69
1670 2187 6.590234 TCTACCAGTGAATATCGCATGTAT 57.410 37.500 0.00 0.00 0.00 2.29
1802 2319 3.070159 TCAGAGAGGACCTGAACAACTTG 59.930 47.826 0.00 0.00 37.68 3.16
1964 2481 9.946862 GCTTTCAGCTCCACTCATCAAATGATG 62.947 44.444 15.65 15.65 44.29 3.07
2008 2525 0.620556 TGGGATCAAGTTCCAGAGCC 59.379 55.000 0.00 0.00 39.54 4.70
2026 2543 0.321653 AGTTAAGGGGAAGCGCTGTG 60.322 55.000 12.58 0.00 0.00 3.66
2144 2665 1.496060 ATCCTCACGCATCCCTTGTA 58.504 50.000 0.00 0.00 0.00 2.41
2154 2675 2.190578 CCTCCCCAATCCTCACGC 59.809 66.667 0.00 0.00 0.00 5.34
2162 2683 1.378762 CACGTTGTCCCTCCCCAAT 59.621 57.895 0.00 0.00 0.00 3.16
2234 2755 4.232221 GCAGAAAATGGAGTGTCATGTTG 58.768 43.478 0.00 0.00 0.00 3.33
2240 2761 0.804989 CCCGCAGAAAATGGAGTGTC 59.195 55.000 0.00 0.00 0.00 3.67
2256 2777 2.430694 TCATCAACATCTGTACCTCCCG 59.569 50.000 0.00 0.00 0.00 5.14
2257 2778 3.742640 GCTCATCAACATCTGTACCTCCC 60.743 52.174 0.00 0.00 0.00 4.30
2292 2813 5.220605 GGACATAATACTTTCGCTTGGACAC 60.221 44.000 0.00 0.00 0.00 3.67
2556 3077 3.879892 AGTTTCTTGAGCTGTTTCTGACC 59.120 43.478 0.00 0.00 0.00 4.02
2687 3208 1.612726 GCCAGCATCTGAACTCCAACT 60.613 52.381 0.00 0.00 32.44 3.16
2715 3236 7.202016 TGAACAACCTCATAATCACAGTTTC 57.798 36.000 0.00 0.00 0.00 2.78
2721 3242 5.408604 ACGACTTGAACAACCTCATAATCAC 59.591 40.000 0.00 0.00 0.00 3.06
2725 3246 5.010719 AGAGACGACTTGAACAACCTCATAA 59.989 40.000 0.00 0.00 0.00 1.90
2743 3264 3.653344 TCCTGTTGTGAAATCAGAGACG 58.347 45.455 0.00 0.00 0.00 4.18
2766 3287 2.038164 AGTGGCATGACGATGATGCTAT 59.962 45.455 14.52 2.92 44.75 2.97
2795 3316 9.490663 CATAAATAAGCTGACGAAACCTTTTAG 57.509 33.333 0.00 0.00 0.00 1.85
2892 3413 3.930336 TCAGTTCCACACATCAGATGAC 58.070 45.455 17.81 3.59 0.00 3.06
2965 3486 4.262164 GCAAAGGCCTCTTTCAAATGAAGA 60.262 41.667 5.23 0.00 40.92 2.87
2975 3496 2.363359 CAACAGAAGCAAAGGCCTCTTT 59.637 45.455 5.23 0.00 38.77 2.52
3083 3604 0.041833 TGCTTCTCTCCAGCCCTACT 59.958 55.000 0.00 0.00 36.33 2.57
3084 3605 0.905357 TTGCTTCTCTCCAGCCCTAC 59.095 55.000 0.00 0.00 36.33 3.18
3090 3611 0.725686 CGCATGTTGCTTCTCTCCAG 59.274 55.000 0.00 0.00 42.25 3.86
3091 3612 0.321346 TCGCATGTTGCTTCTCTCCA 59.679 50.000 0.00 0.00 42.25 3.86
3147 3668 6.152661 AGTGTTATTCTCTCTGGTCTCTTCTG 59.847 42.308 0.00 0.00 0.00 3.02
3156 3677 5.599732 CAGATGGAGTGTTATTCTCTCTGG 58.400 45.833 0.00 0.00 37.01 3.86
3164 3685 4.910195 TCAACAGCAGATGGAGTGTTATT 58.090 39.130 0.00 0.00 31.92 1.40
3184 3705 1.085893 CGCCAGCATGTGTACATTCA 58.914 50.000 0.00 0.00 33.61 2.57
3202 3723 4.614764 CGGACAGTATCATCAGATTCCTCG 60.615 50.000 0.00 0.00 35.67 4.63
3219 3740 4.138290 ACAGTCATATCCTACTCGGACAG 58.862 47.826 0.00 0.00 46.80 3.51
3238 3759 3.487711 CGTAGAACTCTGAATCGGGACAG 60.488 52.174 0.00 0.00 35.72 3.51
3244 3765 7.273598 TCTGAAAATTCGTAGAACTCTGAATCG 59.726 37.037 0.00 0.00 45.90 3.34
3259 3780 5.514279 AGCAGTCTTGTTTCTGAAAATTCG 58.486 37.500 4.09 0.00 34.02 3.34
3370 3891 5.163663 TGCTTGTACTTTGTTGTTCTTGAGG 60.164 40.000 0.00 0.00 0.00 3.86
3559 4086 1.439679 ATTCGTTTCTTCTGCCCGTC 58.560 50.000 0.00 0.00 0.00 4.79
3562 4089 5.560966 TTTCATATTCGTTTCTTCTGCCC 57.439 39.130 0.00 0.00 0.00 5.36
3588 4115 4.101448 CCTCACCAAGGCGAGGGG 62.101 72.222 14.16 0.00 44.37 4.79
3724 4251 3.610911 CCTGTAACCATCAACCTTCCTC 58.389 50.000 0.00 0.00 0.00 3.71
3727 4254 2.092323 GCCCTGTAACCATCAACCTTC 58.908 52.381 0.00 0.00 0.00 3.46
3808 4335 0.394899 GGAAGCAAGGGATCTGGTGG 60.395 60.000 0.00 0.00 0.00 4.61
3859 4386 1.078143 ATCGAGCTCCAAACAGCCC 60.078 57.895 8.47 0.00 40.65 5.19
3913 4440 2.094906 CACCATGCATGAACAAGGTCAG 60.095 50.000 28.31 9.32 39.54 3.51
3923 4450 0.994247 AGGAGGTTCACCATGCATGA 59.006 50.000 28.31 6.29 38.89 3.07
3931 4458 1.002011 GCCTTCCAGGAGGTTCACC 60.002 63.158 0.00 0.00 37.67 4.02
3937 4464 1.340502 GGAAAAGAGCCTTCCAGGAGG 60.341 57.143 0.00 0.00 41.79 4.30
3941 4468 2.867109 TCAGGAAAAGAGCCTTCCAG 57.133 50.000 4.53 0.00 44.19 3.86
4004 4531 4.119862 CGGGTACAGAATAACATCACTGG 58.880 47.826 0.00 0.00 35.08 4.00
4024 4551 0.798776 CTGCTGCAGGAGTAAAACGG 59.201 55.000 25.76 2.64 0.00 4.44
4092 4619 2.790468 GCCACGTCGCTAACTACTACTG 60.790 54.545 0.00 0.00 0.00 2.74
4136 4663 8.088365 GGCAGTTCAATAACCAGACTAAAAATT 58.912 33.333 0.00 0.00 36.15 1.82
4181 4708 3.243334 GGAGTATTTAGGAACGGACGGAG 60.243 52.174 0.00 0.00 0.00 4.63
4182 4709 2.689983 GGAGTATTTAGGAACGGACGGA 59.310 50.000 0.00 0.00 0.00 4.69
4183 4710 2.223900 GGGAGTATTTAGGAACGGACGG 60.224 54.545 0.00 0.00 0.00 4.79
4184 4711 2.692041 AGGGAGTATTTAGGAACGGACG 59.308 50.000 0.00 0.00 0.00 4.79
4185 4712 3.959449 AGAGGGAGTATTTAGGAACGGAC 59.041 47.826 0.00 0.00 0.00 4.79
4186 4713 3.958798 CAGAGGGAGTATTTAGGAACGGA 59.041 47.826 0.00 0.00 0.00 4.69
4187 4714 3.705072 ACAGAGGGAGTATTTAGGAACGG 59.295 47.826 0.00 0.00 0.00 4.44
4188 4715 6.461110 TTACAGAGGGAGTATTTAGGAACG 57.539 41.667 0.00 0.00 0.00 3.95
4189 4716 7.764901 CAGTTTACAGAGGGAGTATTTAGGAAC 59.235 40.741 0.00 0.00 0.00 3.62
4190 4717 7.676893 TCAGTTTACAGAGGGAGTATTTAGGAA 59.323 37.037 0.00 0.00 0.00 3.36
4191 4718 7.186972 TCAGTTTACAGAGGGAGTATTTAGGA 58.813 38.462 0.00 0.00 0.00 2.94
4192 4719 7.419711 TCAGTTTACAGAGGGAGTATTTAGG 57.580 40.000 0.00 0.00 0.00 2.69
4198 4725 9.575868 CTCTTATATCAGTTTACAGAGGGAGTA 57.424 37.037 0.00 0.00 0.00 2.59
4199 4726 7.014808 GCTCTTATATCAGTTTACAGAGGGAGT 59.985 40.741 0.00 0.00 0.00 3.85
4200 4727 7.375053 GCTCTTATATCAGTTTACAGAGGGAG 58.625 42.308 0.00 0.00 0.00 4.30
4201 4728 6.016192 CGCTCTTATATCAGTTTACAGAGGGA 60.016 42.308 4.76 0.00 40.49 4.20
4202 4729 6.153067 CGCTCTTATATCAGTTTACAGAGGG 58.847 44.000 0.00 0.00 34.68 4.30
4203 4730 6.740110 ACGCTCTTATATCAGTTTACAGAGG 58.260 40.000 0.00 0.00 0.00 3.69
4204 4731 8.635877 AAACGCTCTTATATCAGTTTACAGAG 57.364 34.615 0.00 0.00 31.14 3.35
4205 4732 9.731819 CTAAACGCTCTTATATCAGTTTACAGA 57.268 33.333 0.00 0.00 34.29 3.41
4206 4733 9.731819 TCTAAACGCTCTTATATCAGTTTACAG 57.268 33.333 0.00 0.00 34.29 2.74
4210 4737 9.988815 ATGATCTAAACGCTCTTATATCAGTTT 57.011 29.630 0.00 0.00 31.66 2.66
4217 4744 8.687242 CCTCCATATGATCTAAACGCTCTTATA 58.313 37.037 3.65 0.00 0.00 0.98
4218 4745 7.364232 CCCTCCATATGATCTAAACGCTCTTAT 60.364 40.741 3.65 0.00 0.00 1.73
4219 4746 6.071334 CCCTCCATATGATCTAAACGCTCTTA 60.071 42.308 3.65 0.00 0.00 2.10
4220 4747 5.279708 CCCTCCATATGATCTAAACGCTCTT 60.280 44.000 3.65 0.00 0.00 2.85
4221 4748 4.221703 CCCTCCATATGATCTAAACGCTCT 59.778 45.833 3.65 0.00 0.00 4.09
4222 4749 4.220821 TCCCTCCATATGATCTAAACGCTC 59.779 45.833 3.65 0.00 0.00 5.03
4223 4750 4.160329 TCCCTCCATATGATCTAAACGCT 58.840 43.478 3.65 0.00 0.00 5.07
4224 4751 4.021016 ACTCCCTCCATATGATCTAAACGC 60.021 45.833 3.65 0.00 0.00 4.84
4225 4752 5.730296 ACTCCCTCCATATGATCTAAACG 57.270 43.478 3.65 0.00 0.00 3.60
4228 4755 9.702253 GACTTATACTCCCTCCATATGATCTAA 57.298 37.037 3.65 0.00 0.00 2.10
4229 4756 9.074715 AGACTTATACTCCCTCCATATGATCTA 57.925 37.037 3.65 0.00 0.00 1.98
4230 4757 7.949696 AGACTTATACTCCCTCCATATGATCT 58.050 38.462 3.65 0.00 0.00 2.75
4231 4758 8.602472 AAGACTTATACTCCCTCCATATGATC 57.398 38.462 3.65 0.00 0.00 2.92
4232 4759 8.980832 AAAGACTTATACTCCCTCCATATGAT 57.019 34.615 3.65 0.00 0.00 2.45
4233 4760 8.798975 AAAAGACTTATACTCCCTCCATATGA 57.201 34.615 3.65 0.00 0.00 2.15
4236 4763 9.947189 TCTAAAAAGACTTATACTCCCTCCATA 57.053 33.333 0.00 0.00 0.00 2.74
4237 4764 8.855804 TCTAAAAAGACTTATACTCCCTCCAT 57.144 34.615 0.00 0.00 0.00 3.41
4238 4765 8.120538 TCTCTAAAAAGACTTATACTCCCTCCA 58.879 37.037 0.00 0.00 0.00 3.86
4239 4766 8.536340 TCTCTAAAAAGACTTATACTCCCTCC 57.464 38.462 0.00 0.00 0.00 4.30
4260 4787 9.179909 CCGTATGTAGTCCATATTAGAATCTCT 57.820 37.037 0.00 0.00 38.29 3.10
4261 4788 9.175312 TCCGTATGTAGTCCATATTAGAATCTC 57.825 37.037 0.00 0.00 38.29 2.75
4262 4789 9.179909 CTCCGTATGTAGTCCATATTAGAATCT 57.820 37.037 0.00 0.00 38.29 2.40
4263 4790 7.916450 GCTCCGTATGTAGTCCATATTAGAATC 59.084 40.741 0.00 0.00 38.29 2.52
4264 4791 7.396339 TGCTCCGTATGTAGTCCATATTAGAAT 59.604 37.037 0.00 0.00 38.29 2.40
4265 4792 6.717997 TGCTCCGTATGTAGTCCATATTAGAA 59.282 38.462 0.00 0.00 38.29 2.10
4266 4793 6.243148 TGCTCCGTATGTAGTCCATATTAGA 58.757 40.000 0.00 0.00 38.29 2.10
4267 4794 6.510879 TGCTCCGTATGTAGTCCATATTAG 57.489 41.667 0.00 0.00 38.29 1.73
4268 4795 6.904463 TTGCTCCGTATGTAGTCCATATTA 57.096 37.500 0.00 0.00 38.29 0.98
4269 4796 5.801531 TTGCTCCGTATGTAGTCCATATT 57.198 39.130 0.00 0.00 38.29 1.28
4270 4797 5.801531 TTTGCTCCGTATGTAGTCCATAT 57.198 39.130 0.00 0.00 38.29 1.78
4271 4798 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
4272 4799 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
4273 4800 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
4274 4801 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
4275 4802 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4276 4803 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4277 4804 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4278 4805 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4279 4806 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4280 4807 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4281 4808 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4282 4809 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4283 4810 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4284 4811 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
4285 4812 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
4286 4813 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
4296 4823 7.684937 ACGTAGTTTAGAGTGTAGATTCACT 57.315 36.000 0.00 0.00 45.46 3.41
4312 4839 9.224267 ACATACGGATGTATATAGACGTAGTTT 57.776 33.333 12.79 0.00 43.41 2.66
4313 4840 8.783833 ACATACGGATGTATATAGACGTAGTT 57.216 34.615 12.79 0.00 43.41 2.24
4314 4841 9.526713 CTACATACGGATGTATATAGACGTAGT 57.473 37.037 20.64 11.55 45.77 2.73
4315 4842 9.526713 ACTACATACGGATGTATATAGACGTAG 57.473 37.037 20.64 9.36 45.42 3.51
4316 4843 9.521503 GACTACATACGGATGTATATAGACGTA 57.478 37.037 20.64 9.65 45.42 3.57
4317 4844 7.493971 GGACTACATACGGATGTATATAGACGT 59.506 40.741 20.64 12.85 45.42 4.34
4318 4845 7.493645 TGGACTACATACGGATGTATATAGACG 59.506 40.741 20.64 9.79 45.42 4.18
4319 4846 8.728337 TGGACTACATACGGATGTATATAGAC 57.272 38.462 20.64 10.95 45.42 2.59
4324 4851 9.689501 TCAATATGGACTACATACGGATGTATA 57.310 33.333 20.64 11.30 45.42 1.47
4325 4852 8.589701 TCAATATGGACTACATACGGATGTAT 57.410 34.615 20.64 9.39 45.42 2.29
4326 4853 8.411991 TTCAATATGGACTACATACGGATGTA 57.588 34.615 19.32 19.32 44.77 2.29
4328 4855 8.777865 ATTTCAATATGGACTACATACGGATG 57.222 34.615 5.94 5.94 44.41 3.51
4329 4856 8.816894 AGATTTCAATATGGACTACATACGGAT 58.183 33.333 0.00 0.00 44.41 4.18
4330 4857 8.190326 AGATTTCAATATGGACTACATACGGA 57.810 34.615 0.00 0.00 44.41 4.69
4331 4858 8.307483 AGAGATTTCAATATGGACTACATACGG 58.693 37.037 0.00 0.00 44.41 4.02
4368 4895 9.819754 ACTATTACTACCTCCGTTCCTAAATAT 57.180 33.333 0.00 0.00 0.00 1.28
4369 4896 9.646522 AACTATTACTACCTCCGTTCCTAAATA 57.353 33.333 0.00 0.00 0.00 1.40
4370 4897 8.544687 AACTATTACTACCTCCGTTCCTAAAT 57.455 34.615 0.00 0.00 0.00 1.40
4371 4898 7.961326 AACTATTACTACCTCCGTTCCTAAA 57.039 36.000 0.00 0.00 0.00 1.85
4372 4899 7.961326 AAACTATTACTACCTCCGTTCCTAA 57.039 36.000 0.00 0.00 0.00 2.69
4373 4900 8.451908 GTAAACTATTACTACCTCCGTTCCTA 57.548 38.462 0.00 0.00 38.69 2.94
4374 4901 7.340122 GTAAACTATTACTACCTCCGTTCCT 57.660 40.000 0.00 0.00 38.69 3.36
4390 4917 4.427312 CCTTCGCGGTTACAGTAAACTAT 58.573 43.478 6.13 0.00 0.00 2.12
4459 4986 4.697352 AGTGATGGATGAACACAAAGCTAC 59.303 41.667 0.00 0.00 37.05 3.58
4667 5215 4.386867 TCTGTTATTAGCCTTCCTGACG 57.613 45.455 0.00 0.00 0.00 4.35
4765 5348 4.036144 GCTCTGATTTTACAGGCCTGATTC 59.964 45.833 39.19 24.03 38.31 2.52
4776 5359 7.166473 CCGCATTTTTCTATGCTCTGATTTTAC 59.834 37.037 6.97 0.00 46.81 2.01
4777 5360 7.195646 CCGCATTTTTCTATGCTCTGATTTTA 58.804 34.615 6.97 0.00 46.81 1.52
4778 5361 6.038356 CCGCATTTTTCTATGCTCTGATTTT 58.962 36.000 6.97 0.00 46.81 1.82
4948 5564 6.835914 AGATCTTTGCGAGTGTTATTCTTTG 58.164 36.000 0.00 0.00 0.00 2.77
5059 5677 4.437239 AGTCTACAGTGCATACAAGATGC 58.563 43.478 2.55 2.55 44.76 3.91
5299 5917 3.319198 TCCAGGCCGTCTCAACCC 61.319 66.667 0.00 0.00 0.00 4.11
5337 5955 7.981225 TGCCTGCTCCAAAATCTTTATTAAATC 59.019 33.333 0.00 0.00 0.00 2.17
5388 6006 1.682684 AGAGTCCCTGCAGTACCGG 60.683 63.158 13.81 0.00 0.00 5.28
5389 6007 1.251527 ACAGAGTCCCTGCAGTACCG 61.252 60.000 13.81 5.03 46.81 4.02
5391 6009 1.338200 CCAACAGAGTCCCTGCAGTAC 60.338 57.143 13.81 10.56 46.81 2.73
5392 6010 0.976641 CCAACAGAGTCCCTGCAGTA 59.023 55.000 13.81 0.00 46.81 2.74
5420 6038 3.816580 GAGGGACTTCGAACACTCC 57.183 57.895 6.75 5.28 41.55 3.85
5421 6039 3.816580 GGAGGGACTTCGAACACTC 57.183 57.895 9.05 9.05 41.55 3.51
5429 6047 3.388841 TGGAAGCGGAGGGACTTC 58.611 61.111 0.00 0.00 41.55 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.