Multiple sequence alignment - TraesCS2B01G365200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G365200 chr2B 100.000 3815 0 0 1 3815 519181033 519184847 0.000000e+00 7046.0
1 TraesCS2B01G365200 chr2A 95.411 2898 119 10 930 3815 585209430 585212325 0.000000e+00 4602.0
2 TraesCS2B01G365200 chr2A 86.250 80 7 2 92 167 632934486 632934407 2.440000e-12 84.2
3 TraesCS2B01G365200 chr2D 94.085 2333 104 15 1495 3815 441571848 441574158 0.000000e+00 3513.0
4 TraesCS2B01G365200 chr2D 92.166 434 23 1 985 1418 441571429 441571851 1.520000e-168 603.0
5 TraesCS2B01G365200 chr4A 82.500 320 51 5 662 979 562300649 562300965 3.750000e-70 276.0
6 TraesCS2B01G365200 chr3A 81.308 321 55 5 662 981 611190795 611190479 4.890000e-64 255.0
7 TraesCS2B01G365200 chr3A 80.272 294 52 6 663 954 611192783 611192494 2.310000e-52 217.0
8 TraesCS2B01G365200 chr7A 79.939 329 50 11 661 979 32760491 32760813 1.070000e-55 228.0
9 TraesCS2B01G365200 chr7A 78.125 320 65 5 663 980 305236626 305236310 8.360000e-47 198.0
10 TraesCS2B01G365200 chr7A 87.500 72 5 2 92 159 554392280 554392351 3.160000e-11 80.5
11 TraesCS2B01G365200 chr6A 79.592 294 53 6 669 959 216114223 216113934 1.800000e-48 204.0
12 TraesCS2B01G365200 chr6A 78.710 310 58 8 669 975 216116211 216115907 2.320000e-47 200.0
13 TraesCS2B01G365200 chr4B 85.567 97 10 2 73 165 411629573 411629669 8.720000e-17 99.0
14 TraesCS2B01G365200 chr6D 84.375 96 11 2 74 165 391925985 391925890 1.460000e-14 91.6
15 TraesCS2B01G365200 chr7D 84.211 95 11 1 75 165 310990196 310990290 5.250000e-14 89.8
16 TraesCS2B01G365200 chr7D 83.333 96 12 2 74 165 236821536 236821631 6.790000e-13 86.1
17 TraesCS2B01G365200 chr5D 98.039 51 1 0 118 168 113380439 113380389 5.250000e-14 89.8
18 TraesCS2B01G365200 chr5B 80.808 99 15 2 71 165 495220231 495220329 1.470000e-09 75.0
19 TraesCS2B01G365200 chr3D 86.111 72 6 2 92 159 23667591 23667520 1.470000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G365200 chr2B 519181033 519184847 3814 False 7046 7046 100.0000 1 3815 1 chr2B.!!$F1 3814
1 TraesCS2B01G365200 chr2A 585209430 585212325 2895 False 4602 4602 95.4110 930 3815 1 chr2A.!!$F1 2885
2 TraesCS2B01G365200 chr2D 441571429 441574158 2729 False 2058 3513 93.1255 985 3815 2 chr2D.!!$F1 2830
3 TraesCS2B01G365200 chr3A 611190479 611192783 2304 True 236 255 80.7900 662 981 2 chr3A.!!$R1 319
4 TraesCS2B01G365200 chr6A 216113934 216116211 2277 True 202 204 79.1510 669 975 2 chr6A.!!$R1 306

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 332 0.106318 GCTGGGGCTCCTCATCAAAT 60.106 55.000 3.07 0.0 35.22 2.32 F
472 473 0.109597 TACGAAACGAACGGAGGAGC 60.110 55.000 0.00 0.0 34.93 4.70 F
961 2291 0.318107 GGGTTCATATGCACATGCGC 60.318 55.000 7.79 0.0 45.83 6.09 F
1923 3378 1.227263 GCTTCCGAGCGAGGCATTA 60.227 57.895 0.00 0.0 42.99 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 3378 1.005097 TGCATCCCATTGAACAGCTCT 59.995 47.619 0.00 0.0 0.00 4.09 R
2112 3567 1.494721 AGAGAAGTTTCCAAGCACCCA 59.505 47.619 0.00 0.0 0.00 4.51 R
2197 3652 2.658285 CCTACCATGACCATGCAATGT 58.342 47.619 4.53 0.0 44.81 2.71 R
3119 4913 0.188342 AAGAGGCACCCAACAATGGT 59.812 50.000 0.00 0.0 46.01 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.641499 TTTTTGCGAAATATTGTGAAAAGACT 57.359 26.923 0.00 0.00 0.00 3.24
41 42 8.641499 TTTTGCGAAATATTGTGAAAAGACTT 57.359 26.923 0.00 0.00 0.00 3.01
42 43 8.641499 TTTGCGAAATATTGTGAAAAGACTTT 57.359 26.923 0.00 0.00 0.00 2.66
43 44 7.621832 TGCGAAATATTGTGAAAAGACTTTG 57.378 32.000 0.06 0.00 0.00 2.77
44 45 6.640499 TGCGAAATATTGTGAAAAGACTTTGG 59.360 34.615 0.06 0.00 0.00 3.28
46 47 7.061094 GCGAAATATTGTGAAAAGACTTTGGAG 59.939 37.037 0.06 0.00 0.00 3.86
47 48 8.076178 CGAAATATTGTGAAAAGACTTTGGAGT 58.924 33.333 0.06 0.00 39.32 3.85
48 49 9.185192 GAAATATTGTGAAAAGACTTTGGAGTG 57.815 33.333 0.06 0.00 35.88 3.51
49 50 4.981806 TTGTGAAAAGACTTTGGAGTGG 57.018 40.909 0.06 0.00 35.88 4.00
50 51 4.229304 TGTGAAAAGACTTTGGAGTGGA 57.771 40.909 0.06 0.00 35.88 4.02
51 52 4.199310 TGTGAAAAGACTTTGGAGTGGAG 58.801 43.478 0.06 0.00 35.88 3.86
52 53 3.565902 GTGAAAAGACTTTGGAGTGGAGG 59.434 47.826 0.06 0.00 35.88 4.30
53 54 3.202151 TGAAAAGACTTTGGAGTGGAGGT 59.798 43.478 0.06 0.00 35.88 3.85
54 55 3.953542 AAAGACTTTGGAGTGGAGGTT 57.046 42.857 0.00 0.00 35.88 3.50
55 56 5.104277 TGAAAAGACTTTGGAGTGGAGGTTA 60.104 40.000 0.06 0.00 35.88 2.85
56 57 4.625607 AAGACTTTGGAGTGGAGGTTAG 57.374 45.455 0.00 0.00 35.88 2.34
57 58 2.907042 AGACTTTGGAGTGGAGGTTAGG 59.093 50.000 0.00 0.00 35.88 2.69
58 59 2.638363 GACTTTGGAGTGGAGGTTAGGT 59.362 50.000 0.00 0.00 35.88 3.08
59 60 3.053826 ACTTTGGAGTGGAGGTTAGGTT 58.946 45.455 0.00 0.00 33.99 3.50
60 61 3.462205 ACTTTGGAGTGGAGGTTAGGTTT 59.538 43.478 0.00 0.00 33.99 3.27
61 62 4.079385 ACTTTGGAGTGGAGGTTAGGTTTT 60.079 41.667 0.00 0.00 33.99 2.43
63 64 4.628963 TGGAGTGGAGGTTAGGTTTTAC 57.371 45.455 0.00 0.00 0.00 2.01
64 65 3.007182 TGGAGTGGAGGTTAGGTTTTACG 59.993 47.826 0.00 0.00 0.00 3.18
65 66 3.259123 GGAGTGGAGGTTAGGTTTTACGA 59.741 47.826 0.00 0.00 0.00 3.43
66 67 4.262592 GGAGTGGAGGTTAGGTTTTACGAA 60.263 45.833 0.00 0.00 0.00 3.85
67 68 5.294734 AGTGGAGGTTAGGTTTTACGAAA 57.705 39.130 0.00 0.00 0.00 3.46
68 69 5.683681 AGTGGAGGTTAGGTTTTACGAAAA 58.316 37.500 0.00 0.00 0.00 2.29
69 70 5.761726 AGTGGAGGTTAGGTTTTACGAAAAG 59.238 40.000 0.00 0.00 0.00 2.27
71 72 6.705825 GTGGAGGTTAGGTTTTACGAAAAGTA 59.294 38.462 0.00 0.00 0.00 2.24
72 73 6.930722 TGGAGGTTAGGTTTTACGAAAAGTAG 59.069 38.462 0.00 0.00 36.56 2.57
73 74 6.931281 GGAGGTTAGGTTTTACGAAAAGTAGT 59.069 38.462 0.00 0.00 36.56 2.73
74 75 8.088365 GGAGGTTAGGTTTTACGAAAAGTAGTA 58.912 37.037 0.00 0.00 36.56 1.82
76 77 8.642432 AGGTTAGGTTTTACGAAAAGTAGTACT 58.358 33.333 0.00 0.00 36.56 2.73
77 78 8.916654 GGTTAGGTTTTACGAAAAGTAGTACTC 58.083 37.037 2.58 0.00 36.56 2.59
78 79 8.916654 GTTAGGTTTTACGAAAAGTAGTACTCC 58.083 37.037 2.58 0.00 36.56 3.85
79 80 6.459066 AGGTTTTACGAAAAGTAGTACTCCC 58.541 40.000 2.58 0.00 36.56 4.30
80 81 6.268617 AGGTTTTACGAAAAGTAGTACTCCCT 59.731 38.462 2.58 0.00 36.56 4.20
82 83 7.374272 GTTTTACGAAAAGTAGTACTCCCTCT 58.626 38.462 2.58 0.00 36.56 3.69
83 84 7.530426 TTTACGAAAAGTAGTACTCCCTCTT 57.470 36.000 2.58 0.00 36.56 2.85
85 86 8.814038 TTACGAAAAGTAGTACTCCCTCTTAT 57.186 34.615 2.58 0.00 36.56 1.73
87 88 8.219546 ACGAAAAGTAGTACTCCCTCTTATAC 57.780 38.462 2.58 0.00 0.00 1.47
88 89 8.052141 ACGAAAAGTAGTACTCCCTCTTATACT 58.948 37.037 2.58 0.00 0.00 2.12
89 90 8.901793 CGAAAAGTAGTACTCCCTCTTATACTT 58.098 37.037 2.58 0.00 34.40 2.24
119 120 9.507329 ACTTATCACTCAAATGAATGTAACACT 57.493 29.630 0.00 0.00 30.82 3.55
151 152 7.492524 TGTCTAGATACATCCATTTGAGTGAC 58.507 38.462 0.00 0.00 0.00 3.67
154 155 8.200120 TCTAGATACATCCATTTGAGTGACAAG 58.800 37.037 0.00 0.00 39.77 3.16
155 156 6.715280 AGATACATCCATTTGAGTGACAAGT 58.285 36.000 0.00 0.00 39.77 3.16
158 159 9.113838 GATACATCCATTTGAGTGACAAGTAAT 57.886 33.333 0.00 0.00 39.77 1.89
161 162 8.896744 ACATCCATTTGAGTGACAAGTAATATG 58.103 33.333 0.00 0.00 39.77 1.78
162 163 7.864108 TCCATTTGAGTGACAAGTAATATGG 57.136 36.000 0.00 0.00 40.44 2.74
165 166 8.906867 CCATTTGAGTGACAAGTAATATGGATT 58.093 33.333 0.00 0.00 41.04 3.01
166 167 9.726232 CATTTGAGTGACAAGTAATATGGATTG 57.274 33.333 0.00 0.00 39.77 2.67
167 168 9.685276 ATTTGAGTGACAAGTAATATGGATTGA 57.315 29.630 0.00 0.00 39.77 2.57
168 169 9.513906 TTTGAGTGACAAGTAATATGGATTGAA 57.486 29.630 0.00 0.00 39.77 2.69
169 170 9.513906 TTGAGTGACAAGTAATATGGATTGAAA 57.486 29.630 0.00 0.00 34.20 2.69
170 171 9.513906 TGAGTGACAAGTAATATGGATTGAAAA 57.486 29.630 0.00 0.00 0.00 2.29
208 209 7.716799 AAAATTCAATCCTACAACCAGCATA 57.283 32.000 0.00 0.00 0.00 3.14
209 210 6.949352 AATTCAATCCTACAACCAGCATAG 57.051 37.500 0.00 0.00 0.00 2.23
210 211 4.422073 TCAATCCTACAACCAGCATAGG 57.578 45.455 0.00 0.00 37.42 2.57
211 212 4.037222 TCAATCCTACAACCAGCATAGGA 58.963 43.478 1.86 1.86 46.59 2.94
212 213 4.473196 TCAATCCTACAACCAGCATAGGAA 59.527 41.667 3.46 0.00 45.87 3.36
213 214 5.045213 TCAATCCTACAACCAGCATAGGAAA 60.045 40.000 3.46 0.00 45.87 3.13
214 215 4.919774 TCCTACAACCAGCATAGGAAAA 57.080 40.909 0.00 0.00 41.22 2.29
215 216 5.249780 TCCTACAACCAGCATAGGAAAAA 57.750 39.130 0.00 0.00 41.22 1.94
216 217 5.826643 TCCTACAACCAGCATAGGAAAAAT 58.173 37.500 0.00 0.00 41.22 1.82
217 218 6.252995 TCCTACAACCAGCATAGGAAAAATT 58.747 36.000 0.00 0.00 41.22 1.82
218 219 6.377146 TCCTACAACCAGCATAGGAAAAATTC 59.623 38.462 0.00 0.00 41.22 2.17
221 222 7.716799 ACAACCAGCATAGGAAAAATTCATA 57.283 32.000 0.00 0.00 0.00 2.15
222 223 8.133024 ACAACCAGCATAGGAAAAATTCATAA 57.867 30.769 0.00 0.00 28.96 1.90
223 224 8.253113 ACAACCAGCATAGGAAAAATTCATAAG 58.747 33.333 0.00 0.00 28.96 1.73
224 225 7.352079 ACCAGCATAGGAAAAATTCATAAGG 57.648 36.000 0.00 0.00 28.96 2.69
225 226 7.125391 ACCAGCATAGGAAAAATTCATAAGGA 58.875 34.615 0.00 0.00 28.96 3.36
228 229 9.688592 CAGCATAGGAAAAATTCATAAGGATTC 57.311 33.333 0.00 0.00 28.96 2.52
229 230 9.652114 AGCATAGGAAAAATTCATAAGGATTCT 57.348 29.630 0.00 0.00 28.96 2.40
234 235 9.634021 AGGAAAAATTCATAAGGATTCTAGTCC 57.366 33.333 0.00 0.00 38.62 3.85
244 245 5.538849 AGGATTCTAGTCCTCCGAAAATC 57.461 43.478 0.00 0.00 45.51 2.17
245 246 4.345547 AGGATTCTAGTCCTCCGAAAATCC 59.654 45.833 6.11 6.11 45.51 3.01
246 247 4.345547 GGATTCTAGTCCTCCGAAAATCCT 59.654 45.833 0.00 0.00 38.30 3.24
248 249 5.848833 TTCTAGTCCTCCGAAAATCCTAC 57.151 43.478 0.00 0.00 0.00 3.18
249 250 3.881688 TCTAGTCCTCCGAAAATCCTACG 59.118 47.826 0.00 0.00 0.00 3.51
250 251 1.755380 AGTCCTCCGAAAATCCTACGG 59.245 52.381 0.00 0.00 46.71 4.02
269 270 9.555727 TCCTACGGATATTTTTAATCAAAGGAG 57.444 33.333 0.00 0.00 30.19 3.69
270 271 8.290325 CCTACGGATATTTTTAATCAAAGGAGC 58.710 37.037 0.00 0.00 0.00 4.70
271 272 7.039313 ACGGATATTTTTAATCAAAGGAGCC 57.961 36.000 0.00 0.00 0.00 4.70
272 273 6.040504 ACGGATATTTTTAATCAAAGGAGCCC 59.959 38.462 0.00 0.00 0.00 5.19
273 274 6.447162 GGATATTTTTAATCAAAGGAGCCCG 58.553 40.000 0.00 0.00 0.00 6.13
275 276 5.582689 ATTTTTAATCAAAGGAGCCCGAG 57.417 39.130 0.00 0.00 0.00 4.63
276 277 3.713826 TTTAATCAAAGGAGCCCGAGT 57.286 42.857 0.00 0.00 0.00 4.18
277 278 2.981859 TAATCAAAGGAGCCCGAGTC 57.018 50.000 0.00 0.00 0.00 3.36
278 279 1.280457 AATCAAAGGAGCCCGAGTCT 58.720 50.000 0.00 0.00 0.00 3.24
279 280 1.280457 ATCAAAGGAGCCCGAGTCTT 58.720 50.000 0.00 0.00 0.00 3.01
280 281 0.321671 TCAAAGGAGCCCGAGTCTTG 59.678 55.000 0.00 0.00 0.00 3.02
281 282 1.003233 AAAGGAGCCCGAGTCTTGC 60.003 57.895 0.00 0.00 0.00 4.01
290 291 1.664649 CGAGTCTTGCGGAACAGCA 60.665 57.895 0.00 0.00 46.54 4.41
296 297 2.956194 TGCGGAACAGCAGCAATG 59.044 55.556 0.00 0.00 44.72 2.82
297 298 2.180017 GCGGAACAGCAGCAATGG 59.820 61.111 0.00 0.00 37.65 3.16
299 300 2.575461 GGAACAGCAGCAATGGGC 59.425 61.111 0.00 0.00 45.30 5.36
308 309 3.196648 GCAATGGGCGACGGATTT 58.803 55.556 0.00 0.00 0.00 2.17
309 310 1.510844 GCAATGGGCGACGGATTTT 59.489 52.632 0.00 0.00 0.00 1.82
310 311 0.108851 GCAATGGGCGACGGATTTTT 60.109 50.000 0.00 0.00 0.00 1.94
325 326 1.541169 TTTTTGCTGGGGCTCCTCA 59.459 52.632 3.07 0.00 39.59 3.86
326 327 0.114954 TTTTTGCTGGGGCTCCTCAT 59.885 50.000 3.07 0.00 39.59 2.90
327 328 0.323725 TTTTGCTGGGGCTCCTCATC 60.324 55.000 3.07 0.00 39.59 2.92
328 329 1.499913 TTTGCTGGGGCTCCTCATCA 61.500 55.000 3.07 0.00 39.59 3.07
329 330 1.499913 TTGCTGGGGCTCCTCATCAA 61.500 55.000 3.07 1.22 39.59 2.57
330 331 1.304282 GCTGGGGCTCCTCATCAAA 59.696 57.895 3.07 0.00 35.22 2.69
331 332 0.106318 GCTGGGGCTCCTCATCAAAT 60.106 55.000 3.07 0.00 35.22 2.32
333 334 2.856222 CTGGGGCTCCTCATCAAATAC 58.144 52.381 3.07 0.00 0.00 1.89
336 337 3.152341 GGGGCTCCTCATCAAATACATG 58.848 50.000 0.00 0.00 0.00 3.21
337 338 3.435601 GGGGCTCCTCATCAAATACATGT 60.436 47.826 2.69 2.69 0.00 3.21
339 340 4.646492 GGGCTCCTCATCAAATACATGTTT 59.354 41.667 2.30 0.00 0.00 2.83
341 342 5.504665 GGCTCCTCATCAAATACATGTTTCG 60.505 44.000 2.30 0.00 0.00 3.46
343 344 6.403636 GCTCCTCATCAAATACATGTTTCGTT 60.404 38.462 2.30 0.00 0.00 3.85
344 345 7.447374 TCCTCATCAAATACATGTTTCGTTT 57.553 32.000 2.30 0.00 0.00 3.60
345 346 7.526608 TCCTCATCAAATACATGTTTCGTTTC 58.473 34.615 2.30 0.00 0.00 2.78
346 347 6.465781 CCTCATCAAATACATGTTTCGTTTCG 59.534 38.462 2.30 0.00 0.00 3.46
348 349 7.356540 TCATCAAATACATGTTTCGTTTCGTT 58.643 30.769 2.30 0.00 0.00 3.85
351 352 6.629649 TCAAATACATGTTTCGTTTCGTTGTC 59.370 34.615 2.30 0.00 0.00 3.18
352 353 5.917541 ATACATGTTTCGTTTCGTTGTCT 57.082 34.783 2.30 0.00 0.00 3.41
353 354 3.935450 ACATGTTTCGTTTCGTTGTCTG 58.065 40.909 0.00 0.00 0.00 3.51
354 355 3.242608 ACATGTTTCGTTTCGTTGTCTGG 60.243 43.478 0.00 0.00 0.00 3.86
355 356 2.619147 TGTTTCGTTTCGTTGTCTGGA 58.381 42.857 0.00 0.00 0.00 3.86
356 357 3.001414 TGTTTCGTTTCGTTGTCTGGAA 58.999 40.909 0.00 0.00 0.00 3.53
358 359 3.870723 TTCGTTTCGTTGTCTGGAATG 57.129 42.857 0.00 0.00 0.00 2.67
359 360 2.139917 TCGTTTCGTTGTCTGGAATGG 58.860 47.619 0.00 0.00 0.00 3.16
360 361 2.139917 CGTTTCGTTGTCTGGAATGGA 58.860 47.619 0.00 0.00 0.00 3.41
361 362 2.157668 CGTTTCGTTGTCTGGAATGGAG 59.842 50.000 0.00 0.00 0.00 3.86
362 363 3.139077 GTTTCGTTGTCTGGAATGGAGT 58.861 45.455 0.00 0.00 0.00 3.85
363 364 4.312443 GTTTCGTTGTCTGGAATGGAGTA 58.688 43.478 0.00 0.00 0.00 2.59
369 370 5.163754 CGTTGTCTGGAATGGAGTATTTTCC 60.164 44.000 0.00 0.00 39.50 3.13
419 420 8.637196 AGGTACCCTTCAAAAGAAAAATCTAG 57.363 34.615 8.74 0.00 0.00 2.43
420 421 8.445588 AGGTACCCTTCAAAAGAAAAATCTAGA 58.554 33.333 8.74 0.00 0.00 2.43
421 422 9.244292 GGTACCCTTCAAAAGAAAAATCTAGAT 57.756 33.333 0.00 0.00 0.00 1.98
429 430 9.739276 TCAAAAGAAAAATCTAGATAGAAGGCA 57.261 29.630 5.46 0.00 35.69 4.75
431 432 8.744568 AAAGAAAAATCTAGATAGAAGGCAGG 57.255 34.615 5.46 0.00 35.69 4.85
432 433 6.836242 AGAAAAATCTAGATAGAAGGCAGGG 58.164 40.000 5.46 0.00 35.69 4.45
434 435 3.558608 ATCTAGATAGAAGGCAGGGCT 57.441 47.619 2.53 0.00 35.69 5.19
435 436 2.603021 TCTAGATAGAAGGCAGGGCTG 58.397 52.381 0.00 0.00 0.00 4.85
436 437 2.177888 TCTAGATAGAAGGCAGGGCTGA 59.822 50.000 0.00 0.00 0.00 4.26
437 438 1.885049 AGATAGAAGGCAGGGCTGAA 58.115 50.000 0.00 0.00 0.00 3.02
438 439 2.200081 AGATAGAAGGCAGGGCTGAAA 58.800 47.619 0.00 0.00 0.00 2.69
439 440 2.782341 AGATAGAAGGCAGGGCTGAAAT 59.218 45.455 0.00 0.00 0.00 2.17
440 441 3.976654 AGATAGAAGGCAGGGCTGAAATA 59.023 43.478 0.00 0.00 0.00 1.40
441 442 4.413520 AGATAGAAGGCAGGGCTGAAATAA 59.586 41.667 0.00 0.00 0.00 1.40
443 444 4.796110 AGAAGGCAGGGCTGAAATAATA 57.204 40.909 0.00 0.00 0.00 0.98
444 445 5.129368 AGAAGGCAGGGCTGAAATAATAA 57.871 39.130 0.00 0.00 0.00 1.40
445 446 5.709594 AGAAGGCAGGGCTGAAATAATAAT 58.290 37.500 0.00 0.00 0.00 1.28
446 447 5.537674 AGAAGGCAGGGCTGAAATAATAATG 59.462 40.000 0.00 0.00 0.00 1.90
447 448 4.154942 AGGCAGGGCTGAAATAATAATGG 58.845 43.478 0.00 0.00 0.00 3.16
448 449 3.259123 GGCAGGGCTGAAATAATAATGGG 59.741 47.826 0.00 0.00 0.00 4.00
449 450 4.151883 GCAGGGCTGAAATAATAATGGGA 58.848 43.478 0.00 0.00 0.00 4.37
452 453 5.835280 CAGGGCTGAAATAATAATGGGAACT 59.165 40.000 0.00 0.00 0.00 3.01
453 454 6.324770 CAGGGCTGAAATAATAATGGGAACTT 59.675 38.462 0.00 0.00 0.00 2.66
454 455 7.505585 CAGGGCTGAAATAATAATGGGAACTTA 59.494 37.037 0.00 0.00 0.00 2.24
455 456 7.505923 AGGGCTGAAATAATAATGGGAACTTAC 59.494 37.037 0.00 0.00 0.00 2.34
456 457 7.360361 GGCTGAAATAATAATGGGAACTTACG 58.640 38.462 0.00 0.00 0.00 3.18
457 458 7.227910 GGCTGAAATAATAATGGGAACTTACGA 59.772 37.037 0.00 0.00 0.00 3.43
458 459 8.617809 GCTGAAATAATAATGGGAACTTACGAA 58.382 33.333 0.00 0.00 0.00 3.85
461 462 9.429600 GAAATAATAATGGGAACTTACGAAACG 57.570 33.333 0.00 0.00 0.00 3.60
462 463 8.721019 AATAATAATGGGAACTTACGAAACGA 57.279 30.769 0.00 0.00 0.00 3.85
463 464 8.721019 ATAATAATGGGAACTTACGAAACGAA 57.279 30.769 0.00 0.00 0.00 3.85
466 467 1.456923 GGGAACTTACGAAACGAACGG 59.543 52.381 0.00 0.00 34.93 4.44
467 468 2.393764 GGAACTTACGAAACGAACGGA 58.606 47.619 0.00 0.00 34.93 4.69
468 469 2.406357 GGAACTTACGAAACGAACGGAG 59.594 50.000 0.00 0.00 34.93 4.63
469 470 2.056094 ACTTACGAAACGAACGGAGG 57.944 50.000 0.00 0.00 34.93 4.30
470 471 1.608590 ACTTACGAAACGAACGGAGGA 59.391 47.619 0.00 0.00 34.93 3.71
471 472 2.248487 CTTACGAAACGAACGGAGGAG 58.752 52.381 0.00 0.00 34.93 3.69
472 473 0.109597 TACGAAACGAACGGAGGAGC 60.110 55.000 0.00 0.00 34.93 4.70
473 474 1.372499 CGAAACGAACGGAGGAGCA 60.372 57.895 0.00 0.00 0.00 4.26
474 475 0.942410 CGAAACGAACGGAGGAGCAA 60.942 55.000 0.00 0.00 0.00 3.91
475 476 1.223187 GAAACGAACGGAGGAGCAAA 58.777 50.000 0.00 0.00 0.00 3.68
476 477 1.804748 GAAACGAACGGAGGAGCAAAT 59.195 47.619 0.00 0.00 0.00 2.32
477 478 1.892209 AACGAACGGAGGAGCAAATT 58.108 45.000 0.00 0.00 0.00 1.82
478 479 1.439679 ACGAACGGAGGAGCAAATTC 58.560 50.000 0.00 0.00 0.00 2.17
479 480 1.270625 ACGAACGGAGGAGCAAATTCA 60.271 47.619 0.00 0.00 0.00 2.57
480 481 1.804151 CGAACGGAGGAGCAAATTCAA 59.196 47.619 0.00 0.00 0.00 2.69
481 482 2.412847 CGAACGGAGGAGCAAATTCAAC 60.413 50.000 0.00 0.00 0.00 3.18
486 487 3.365364 CGGAGGAGCAAATTCAACAGTTC 60.365 47.826 0.00 0.00 0.00 3.01
487 488 3.569701 GGAGGAGCAAATTCAACAGTTCA 59.430 43.478 0.00 0.00 0.00 3.18
490 491 6.165700 AGGAGCAAATTCAACAGTTCAAAT 57.834 33.333 0.00 0.00 0.00 2.32
493 494 6.479660 GGAGCAAATTCAACAGTTCAAATTGA 59.520 34.615 2.10 0.00 0.00 2.57
494 495 7.011295 GGAGCAAATTCAACAGTTCAAATTGAA 59.989 33.333 4.03 4.03 44.18 2.69
511 512 8.902806 TCAAATTGAACCTATGATATTTCGCTT 58.097 29.630 0.00 0.00 0.00 4.68
516 517 9.997482 TTGAACCTATGATATTTCGCTTAAAAC 57.003 29.630 0.00 0.00 0.00 2.43
517 518 9.168451 TGAACCTATGATATTTCGCTTAAAACA 57.832 29.630 0.00 0.00 0.00 2.83
518 519 9.997482 GAACCTATGATATTTCGCTTAAAACAA 57.003 29.630 0.00 0.00 0.00 2.83
534 535 9.232082 GCTTAAAACAAAATGAAAAATGAACCC 57.768 29.630 0.00 0.00 0.00 4.11
540 541 9.790344 AACAAAATGAAAAATGAACCCATGATA 57.210 25.926 0.00 0.00 32.36 2.15
546 547 8.131847 TGAAAAATGAACCCATGATATTCACA 57.868 30.769 7.99 1.20 35.28 3.58
547 548 8.591940 TGAAAAATGAACCCATGATATTCACAA 58.408 29.630 7.99 0.00 35.28 3.33
552 553 8.853126 AATGAACCCATGATATTCACAATAGTG 58.147 33.333 7.99 0.00 38.92 2.74
554 555 5.945310 ACCCATGATATTCACAATAGTGCT 58.055 37.500 0.00 0.00 45.49 4.40
555 556 5.766670 ACCCATGATATTCACAATAGTGCTG 59.233 40.000 0.00 0.00 45.49 4.41
556 557 5.766670 CCCATGATATTCACAATAGTGCTGT 59.233 40.000 0.00 0.00 45.49 4.40
557 558 6.936335 CCCATGATATTCACAATAGTGCTGTA 59.064 38.462 0.00 0.00 45.49 2.74
566 567 7.067532 TCACAATAGTGCTGTAATTTTACGG 57.932 36.000 5.15 5.15 45.49 4.02
570 571 7.175293 ACAATAGTGCTGTAATTTTACGGGAAA 59.825 33.333 10.47 1.88 41.14 3.13
572 573 8.967664 ATAGTGCTGTAATTTTACGGGAAATA 57.032 30.769 10.47 5.76 41.14 1.40
575 576 7.338449 AGTGCTGTAATTTTACGGGAAATATGT 59.662 33.333 10.47 0.00 41.14 2.29
576 577 7.642586 GTGCTGTAATTTTACGGGAAATATGTC 59.357 37.037 10.47 0.00 41.14 3.06
577 578 6.849305 GCTGTAATTTTACGGGAAATATGTCG 59.151 38.462 10.47 0.00 39.78 4.35
578 579 7.254522 GCTGTAATTTTACGGGAAATATGTCGA 60.255 37.037 10.47 0.00 39.78 4.20
579 580 8.665643 TGTAATTTTACGGGAAATATGTCGAT 57.334 30.769 0.00 0.00 36.45 3.59
580 581 9.111613 TGTAATTTTACGGGAAATATGTCGATT 57.888 29.630 0.00 0.00 36.45 3.34
600 601 2.490328 ACGAAAGTGTTCCGTAACGA 57.510 45.000 0.00 0.00 46.97 3.85
601 602 3.017265 ACGAAAGTGTTCCGTAACGAT 57.983 42.857 0.00 0.00 46.97 3.73
602 603 3.383761 ACGAAAGTGTTCCGTAACGATT 58.616 40.909 0.00 0.00 46.97 3.34
605 606 5.461737 ACGAAAGTGTTCCGTAACGATTAAA 59.538 36.000 0.00 0.00 46.97 1.52
606 607 6.019156 ACGAAAGTGTTCCGTAACGATTAAAA 60.019 34.615 0.00 0.00 46.97 1.52
607 608 6.845280 CGAAAGTGTTCCGTAACGATTAAAAA 59.155 34.615 0.00 0.00 38.53 1.94
652 653 3.385193 AAAAAGGCGTTCTGAAATGGG 57.615 42.857 0.00 0.00 0.00 4.00
653 654 2.286365 AAAGGCGTTCTGAAATGGGA 57.714 45.000 0.00 0.00 0.00 4.37
656 657 2.162681 AGGCGTTCTGAAATGGGAAAG 58.837 47.619 0.00 0.00 0.00 2.62
657 658 1.886542 GGCGTTCTGAAATGGGAAAGT 59.113 47.619 0.00 0.00 0.00 2.66
659 660 3.504520 GGCGTTCTGAAATGGGAAAGTTA 59.495 43.478 0.00 0.00 0.00 2.24
661 662 5.095490 GCGTTCTGAAATGGGAAAGTTATG 58.905 41.667 0.00 0.00 0.00 1.90
662 663 5.106317 GCGTTCTGAAATGGGAAAGTTATGA 60.106 40.000 0.00 0.00 0.00 2.15
664 665 7.367285 CGTTCTGAAATGGGAAAGTTATGAAA 58.633 34.615 0.00 0.00 0.00 2.69
665 666 7.865385 CGTTCTGAAATGGGAAAGTTATGAAAA 59.135 33.333 0.00 0.00 0.00 2.29
666 667 9.541143 GTTCTGAAATGGGAAAGTTATGAAAAA 57.459 29.630 0.00 0.00 0.00 1.94
700 2028 2.233676 ACGTCTCCATGTTCTATGTGCA 59.766 45.455 0.00 0.00 0.00 4.57
705 2033 3.354467 TCCATGTTCTATGTGCATGCAA 58.646 40.909 24.58 13.36 38.79 4.08
713 2041 6.538021 TGTTCTATGTGCATGCAAAAAGTTTT 59.462 30.769 24.58 2.90 0.00 2.43
715 2043 6.047870 TCTATGTGCATGCAAAAAGTTTTGT 58.952 32.000 24.58 1.22 46.92 2.83
724 2052 5.947443 TGCAAAAAGTTTTGTGGGAAAATG 58.053 33.333 15.84 0.00 46.92 2.32
726 2054 6.376581 TGCAAAAAGTTTTGTGGGAAAATGAT 59.623 30.769 15.84 0.00 46.92 2.45
798 2126 6.094719 TGCTATTTAGAAGCACTGCAATTTG 58.905 36.000 3.30 0.00 44.78 2.32
804 2133 5.723492 AGAAGCACTGCAATTTGTTTTTC 57.277 34.783 3.30 0.00 0.00 2.29
808 2137 3.063725 GCACTGCAATTTGTTTTTCTGCA 59.936 39.130 0.00 0.00 40.54 4.41
812 2141 4.121317 TGCAATTTGTTTTTCTGCAGAGG 58.879 39.130 17.43 0.00 38.06 3.69
827 2156 4.307443 GCAGAGGCAAAACAAAACTAGT 57.693 40.909 0.00 0.00 40.72 2.57
854 2183 4.796140 CAAAATTTTGTGCGGCGC 57.204 50.000 27.44 27.44 33.59 6.53
864 2193 3.117812 TGCGGCGCACACATACTG 61.118 61.111 33.07 0.00 31.71 2.74
874 2204 3.186909 GCACACATACTGCGAAGATGTA 58.813 45.455 0.00 0.00 32.58 2.29
879 2209 4.380839 CATACTGCGAAGATGTATGTGC 57.619 45.455 0.00 0.00 38.97 4.57
882 2212 1.926510 CTGCGAAGATGTATGTGCGAA 59.073 47.619 0.00 0.00 0.00 4.70
895 2225 7.993821 TGTATGTGCGAAATTTTCTTTTGAA 57.006 28.000 7.50 0.00 36.52 2.69
900 2230 9.786105 ATGTGCGAAATTTTCTTTTGAATTTTT 57.214 22.222 7.50 0.00 38.37 1.94
959 2289 2.026641 AGTGGGTTCATATGCACATGC 58.973 47.619 7.79 0.00 42.50 4.06
961 2291 0.318107 GGGTTCATATGCACATGCGC 60.318 55.000 7.79 0.00 45.83 6.09
1026 2477 2.293399 GCGATCACAAAACTCAAACCCT 59.707 45.455 0.00 0.00 0.00 4.34
1027 2478 3.609409 GCGATCACAAAACTCAAACCCTC 60.609 47.826 0.00 0.00 0.00 4.30
1028 2479 3.058224 CGATCACAAAACTCAAACCCTCC 60.058 47.826 0.00 0.00 0.00 4.30
1029 2480 3.662759 TCACAAAACTCAAACCCTCCT 57.337 42.857 0.00 0.00 0.00 3.69
1030 2481 3.551846 TCACAAAACTCAAACCCTCCTC 58.448 45.455 0.00 0.00 0.00 3.71
1031 2482 3.202151 TCACAAAACTCAAACCCTCCTCT 59.798 43.478 0.00 0.00 0.00 3.69
1183 2638 3.434319 CGCATTTCGCCAGGCACT 61.434 61.111 13.30 0.00 37.30 4.40
1302 2757 2.835431 CTCACCCTCTCCGGCGAT 60.835 66.667 9.30 0.00 0.00 4.58
1629 3084 4.379243 AGGTTCGCCGAGGCACTG 62.379 66.667 15.03 0.00 43.66 3.66
1681 3136 1.915228 GAGGGGACATTGGCTAGCA 59.085 57.895 18.24 0.00 0.00 3.49
1785 3240 1.401905 GAACTCATCGTTGGGAATGCC 59.598 52.381 0.00 0.00 35.56 4.40
1830 3285 3.329386 CGAGAAGTTGGATCTTGCAAGA 58.671 45.455 30.23 30.23 39.78 3.02
1923 3378 1.227263 GCTTCCGAGCGAGGCATTA 60.227 57.895 0.00 0.00 42.99 1.90
2043 3498 1.680338 GGAGGTGGGTGCATGAATAC 58.320 55.000 0.00 0.00 0.00 1.89
2085 3540 2.114670 GGATGTGCATGTGGGGACG 61.115 63.158 0.00 0.00 30.91 4.79
2112 3567 4.320023 TGGTTGATATGTACGCAAAGTGT 58.680 39.130 0.00 0.00 0.00 3.55
2197 3652 0.322366 TGCGCTGATCAATGGGTTCA 60.322 50.000 9.73 0.00 0.00 3.18
2248 3703 3.389656 TGTGTACTTTGACAGGATGGTGA 59.610 43.478 0.00 0.00 43.62 4.02
2604 4397 7.148069 GGGGTTTATGTACTCCTCTCAAATTTG 60.148 40.741 12.15 12.15 35.67 2.32
2649 4442 2.501723 TGATGTAAAGAGGGTGAGAGGC 59.498 50.000 0.00 0.00 0.00 4.70
2685 4478 1.001641 CTTGTGGAAGGAGCCAGGG 60.002 63.158 0.00 0.00 38.95 4.45
2740 4533 4.062293 TGAATTTGTAGTTGGACAGACGG 58.938 43.478 0.00 0.00 0.00 4.79
2776 4569 2.761392 TGCGATATGTGCAATGCTTC 57.239 45.000 6.82 0.21 39.87 3.86
2778 4571 2.684374 TGCGATATGTGCAATGCTTCTT 59.316 40.909 6.82 1.15 39.87 2.52
2786 4579 4.985413 TGTGCAATGCTTCTTATGCTAAC 58.015 39.130 6.82 0.00 39.49 2.34
2943 4736 5.231357 GTCATTGCACATTGTTAGCATCATG 59.769 40.000 2.99 5.42 38.19 3.07
3146 4941 1.204146 TGGGTGCCTCTTGGAGTATC 58.796 55.000 0.00 0.00 34.57 2.24
3147 4942 1.273838 TGGGTGCCTCTTGGAGTATCT 60.274 52.381 0.00 0.00 34.57 1.98
3152 4947 1.210478 GCCTCTTGGAGTATCTTGCCA 59.790 52.381 0.00 0.00 34.57 4.92
3182 4977 7.167535 TCAGTTCTTGAACATGATTGATGGTA 58.832 34.615 14.80 0.00 36.23 3.25
3207 5002 2.475155 TCAGCATCAGAACTCCTGGAT 58.525 47.619 0.00 0.00 43.12 3.41
3252 5047 3.977244 GGCACTGGCACAAACCCG 61.977 66.667 0.00 0.00 43.71 5.28
3268 5063 6.005198 ACAAACCCGGACTAATTTGTAATCA 58.995 36.000 0.73 0.00 42.06 2.57
3356 5152 4.286032 AGTTTCTACCCTGCACATAACTGA 59.714 41.667 0.00 0.00 0.00 3.41
3454 5263 2.147150 GGTGAAGTGTTCTGAAGGAGC 58.853 52.381 0.00 0.00 0.00 4.70
3481 5290 8.539770 TGAGACATCATTAGTTCTTTGTTCTC 57.460 34.615 0.00 0.00 0.00 2.87
3640 5579 3.369546 AAATTCACTCCAAAAGCACCG 57.630 42.857 0.00 0.00 0.00 4.94
3658 5597 3.071479 ACCGTGTTTAGTACTTGCATGG 58.929 45.455 20.99 20.99 40.85 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 8.641499 AGTCTTTTCACAATATTTCGCAAAAA 57.359 26.923 0.00 0.00 0.00 1.94
17 18 8.538856 CAAAGTCTTTTCACAATATTTCGCAAA 58.461 29.630 0.00 0.00 0.00 3.68
18 19 7.168972 CCAAAGTCTTTTCACAATATTTCGCAA 59.831 33.333 0.00 0.00 0.00 4.85
19 20 6.640499 CCAAAGTCTTTTCACAATATTTCGCA 59.360 34.615 0.00 0.00 0.00 5.10
20 21 6.861055 TCCAAAGTCTTTTCACAATATTTCGC 59.139 34.615 0.00 0.00 0.00 4.70
22 23 9.185192 CACTCCAAAGTCTTTTCACAATATTTC 57.815 33.333 0.00 0.00 31.71 2.17
23 24 8.143835 CCACTCCAAAGTCTTTTCACAATATTT 58.856 33.333 0.00 0.00 31.71 1.40
24 25 7.505585 TCCACTCCAAAGTCTTTTCACAATATT 59.494 33.333 0.00 0.00 31.71 1.28
27 28 5.200483 TCCACTCCAAAGTCTTTTCACAAT 58.800 37.500 0.00 0.00 31.71 2.71
30 31 3.565902 CCTCCACTCCAAAGTCTTTTCAC 59.434 47.826 0.00 0.00 31.71 3.18
32 33 3.821748 ACCTCCACTCCAAAGTCTTTTC 58.178 45.455 0.00 0.00 31.71 2.29
33 34 3.953542 ACCTCCACTCCAAAGTCTTTT 57.046 42.857 0.00 0.00 31.71 2.27
34 35 3.953542 AACCTCCACTCCAAAGTCTTT 57.046 42.857 0.00 0.00 31.71 2.52
35 36 3.328050 CCTAACCTCCACTCCAAAGTCTT 59.672 47.826 0.00 0.00 31.71 3.01
36 37 2.907042 CCTAACCTCCACTCCAAAGTCT 59.093 50.000 0.00 0.00 31.71 3.24
37 38 2.638363 ACCTAACCTCCACTCCAAAGTC 59.362 50.000 0.00 0.00 31.71 3.01
38 39 2.702748 ACCTAACCTCCACTCCAAAGT 58.297 47.619 0.00 0.00 35.60 2.66
39 40 3.790089 AACCTAACCTCCACTCCAAAG 57.210 47.619 0.00 0.00 0.00 2.77
40 41 4.529716 AAAACCTAACCTCCACTCCAAA 57.470 40.909 0.00 0.00 0.00 3.28
41 42 4.503643 CGTAAAACCTAACCTCCACTCCAA 60.504 45.833 0.00 0.00 0.00 3.53
42 43 3.007182 CGTAAAACCTAACCTCCACTCCA 59.993 47.826 0.00 0.00 0.00 3.86
43 44 3.259123 TCGTAAAACCTAACCTCCACTCC 59.741 47.826 0.00 0.00 0.00 3.85
44 45 4.525912 TCGTAAAACCTAACCTCCACTC 57.474 45.455 0.00 0.00 0.00 3.51
46 47 5.528690 ACTTTTCGTAAAACCTAACCTCCAC 59.471 40.000 0.00 0.00 0.00 4.02
47 48 5.683681 ACTTTTCGTAAAACCTAACCTCCA 58.316 37.500 0.00 0.00 0.00 3.86
48 49 6.931281 ACTACTTTTCGTAAAACCTAACCTCC 59.069 38.462 0.00 0.00 0.00 4.30
49 50 7.953158 ACTACTTTTCGTAAAACCTAACCTC 57.047 36.000 0.00 0.00 0.00 3.85
50 51 8.642432 AGTACTACTTTTCGTAAAACCTAACCT 58.358 33.333 0.00 0.00 0.00 3.50
51 52 8.818141 AGTACTACTTTTCGTAAAACCTAACC 57.182 34.615 0.00 0.00 0.00 2.85
52 53 8.916654 GGAGTACTACTTTTCGTAAAACCTAAC 58.083 37.037 0.00 0.00 0.00 2.34
53 54 8.088365 GGGAGTACTACTTTTCGTAAAACCTAA 58.912 37.037 4.77 0.00 0.00 2.69
54 55 7.451566 AGGGAGTACTACTTTTCGTAAAACCTA 59.548 37.037 4.77 0.00 0.00 3.08
55 56 6.268617 AGGGAGTACTACTTTTCGTAAAACCT 59.731 38.462 4.77 0.00 0.00 3.50
56 57 6.459066 AGGGAGTACTACTTTTCGTAAAACC 58.541 40.000 4.77 0.00 0.00 3.27
57 58 7.374272 AGAGGGAGTACTACTTTTCGTAAAAC 58.626 38.462 4.77 0.00 0.00 2.43
58 59 7.530426 AGAGGGAGTACTACTTTTCGTAAAA 57.470 36.000 4.77 0.00 0.00 1.52
59 60 7.530426 AAGAGGGAGTACTACTTTTCGTAAA 57.470 36.000 4.77 0.00 0.00 2.01
60 61 8.814038 ATAAGAGGGAGTACTACTTTTCGTAA 57.186 34.615 4.77 0.00 0.00 3.18
61 62 9.331282 GTATAAGAGGGAGTACTACTTTTCGTA 57.669 37.037 4.77 4.37 0.00 3.43
63 64 8.449251 AGTATAAGAGGGAGTACTACTTTTCG 57.551 38.462 4.77 0.00 0.00 3.46
124 125 9.367160 TCACTCAAATGGATGTATCTAGACATA 57.633 33.333 0.00 0.00 40.18 2.29
125 126 8.147058 GTCACTCAAATGGATGTATCTAGACAT 58.853 37.037 0.00 0.00 42.82 3.06
126 127 7.124147 TGTCACTCAAATGGATGTATCTAGACA 59.876 37.037 0.00 0.00 0.00 3.41
127 128 7.492524 TGTCACTCAAATGGATGTATCTAGAC 58.507 38.462 0.00 0.00 0.00 2.59
128 129 7.660030 TGTCACTCAAATGGATGTATCTAGA 57.340 36.000 0.00 0.00 0.00 2.43
129 130 7.984050 ACTTGTCACTCAAATGGATGTATCTAG 59.016 37.037 0.00 0.00 35.48 2.43
131 132 6.715280 ACTTGTCACTCAAATGGATGTATCT 58.285 36.000 0.00 0.00 35.48 1.98
132 133 6.992063 ACTTGTCACTCAAATGGATGTATC 57.008 37.500 0.00 0.00 35.48 2.24
135 136 8.896744 CATATTACTTGTCACTCAAATGGATGT 58.103 33.333 0.00 0.00 35.48 3.06
136 137 8.347771 CCATATTACTTGTCACTCAAATGGATG 58.652 37.037 0.00 0.00 39.71 3.51
137 138 8.274322 TCCATATTACTTGTCACTCAAATGGAT 58.726 33.333 0.00 0.00 40.51 3.41
139 140 7.864108 TCCATATTACTTGTCACTCAAATGG 57.136 36.000 0.00 0.00 39.17 3.16
140 141 9.726232 CAATCCATATTACTTGTCACTCAAATG 57.274 33.333 0.00 0.00 35.48 2.32
141 142 9.685276 TCAATCCATATTACTTGTCACTCAAAT 57.315 29.630 0.00 0.00 35.48 2.32
142 143 9.513906 TTCAATCCATATTACTTGTCACTCAAA 57.486 29.630 0.00 0.00 35.48 2.69
143 144 9.513906 TTTCAATCCATATTACTTGTCACTCAA 57.486 29.630 0.00 0.00 34.61 3.02
144 145 9.513906 TTTTCAATCCATATTACTTGTCACTCA 57.486 29.630 0.00 0.00 0.00 3.41
183 184 6.418057 TGCTGGTTGTAGGATTGAATTTTT 57.582 33.333 0.00 0.00 0.00 1.94
184 185 6.610075 ATGCTGGTTGTAGGATTGAATTTT 57.390 33.333 0.00 0.00 0.00 1.82
185 186 6.322201 CCTATGCTGGTTGTAGGATTGAATTT 59.678 38.462 0.00 0.00 37.73 1.82
186 187 5.829924 CCTATGCTGGTTGTAGGATTGAATT 59.170 40.000 0.00 0.00 37.73 2.17
187 188 5.132648 TCCTATGCTGGTTGTAGGATTGAAT 59.867 40.000 0.00 0.00 39.16 2.57
188 189 4.473196 TCCTATGCTGGTTGTAGGATTGAA 59.527 41.667 0.00 0.00 39.16 2.69
190 191 4.422073 TCCTATGCTGGTTGTAGGATTG 57.578 45.455 0.00 0.00 39.16 2.67
191 192 5.450818 TTTCCTATGCTGGTTGTAGGATT 57.549 39.130 1.57 0.00 42.51 3.01
193 194 4.919774 TTTTCCTATGCTGGTTGTAGGA 57.080 40.909 0.00 0.00 41.58 2.94
194 195 6.152661 TGAATTTTTCCTATGCTGGTTGTAGG 59.847 38.462 0.00 0.00 37.03 3.18
196 197 7.716799 ATGAATTTTTCCTATGCTGGTTGTA 57.283 32.000 0.00 0.00 0.00 2.41
197 198 6.610075 ATGAATTTTTCCTATGCTGGTTGT 57.390 33.333 0.00 0.00 0.00 3.32
198 199 7.707893 CCTTATGAATTTTTCCTATGCTGGTTG 59.292 37.037 0.00 0.00 0.00 3.77
199 200 7.619302 TCCTTATGAATTTTTCCTATGCTGGTT 59.381 33.333 0.00 0.00 0.00 3.67
200 201 7.125391 TCCTTATGAATTTTTCCTATGCTGGT 58.875 34.615 0.00 0.00 0.00 4.00
202 203 9.688592 GAATCCTTATGAATTTTTCCTATGCTG 57.311 33.333 0.00 0.00 0.00 4.41
208 209 9.634021 GGACTAGAATCCTTATGAATTTTTCCT 57.366 33.333 0.00 0.00 35.68 3.36
223 224 4.345547 AGGATTTTCGGAGGACTAGAATCC 59.654 45.833 0.00 1.26 40.68 3.01
224 225 5.538849 AGGATTTTCGGAGGACTAGAATC 57.461 43.478 0.00 0.00 0.00 2.52
225 226 5.009811 CGTAGGATTTTCGGAGGACTAGAAT 59.990 44.000 0.00 0.00 0.00 2.40
228 229 4.226113 CGTAGGATTTTCGGAGGACTAG 57.774 50.000 0.00 0.00 0.00 2.57
245 246 8.290325 GGCTCCTTTGATTAAAAATATCCGTAG 58.710 37.037 0.00 0.00 0.00 3.51
246 247 7.229907 GGGCTCCTTTGATTAAAAATATCCGTA 59.770 37.037 0.00 0.00 0.00 4.02
248 249 6.447162 GGGCTCCTTTGATTAAAAATATCCG 58.553 40.000 0.00 0.00 0.00 4.18
249 250 6.264518 TCGGGCTCCTTTGATTAAAAATATCC 59.735 38.462 0.00 0.00 0.00 2.59
250 251 7.013369 ACTCGGGCTCCTTTGATTAAAAATATC 59.987 37.037 0.00 0.00 0.00 1.63
251 252 6.833933 ACTCGGGCTCCTTTGATTAAAAATAT 59.166 34.615 0.00 0.00 0.00 1.28
253 254 5.016831 ACTCGGGCTCCTTTGATTAAAAAT 58.983 37.500 0.00 0.00 0.00 1.82
254 255 4.403734 ACTCGGGCTCCTTTGATTAAAAA 58.596 39.130 0.00 0.00 0.00 1.94
257 258 2.838202 AGACTCGGGCTCCTTTGATTAA 59.162 45.455 0.00 0.00 0.00 1.40
258 259 2.467880 AGACTCGGGCTCCTTTGATTA 58.532 47.619 0.00 0.00 0.00 1.75
262 263 1.301677 GCAAGACTCGGGCTCCTTTG 61.302 60.000 0.00 0.00 0.00 2.77
263 264 1.003233 GCAAGACTCGGGCTCCTTT 60.003 57.895 0.00 0.00 0.00 3.11
265 266 3.764466 CGCAAGACTCGGGCTCCT 61.764 66.667 0.00 0.00 43.02 3.69
266 267 4.821589 CCGCAAGACTCGGGCTCC 62.822 72.222 0.00 0.00 42.99 4.70
267 268 3.296709 TTCCGCAAGACTCGGGCTC 62.297 63.158 3.01 0.00 46.43 4.70
268 269 3.311110 TTCCGCAAGACTCGGGCT 61.311 61.111 3.01 0.00 46.43 5.19
269 270 3.119096 GTTCCGCAAGACTCGGGC 61.119 66.667 3.01 0.00 46.43 6.13
270 271 1.738099 CTGTTCCGCAAGACTCGGG 60.738 63.158 3.01 0.00 46.43 5.14
272 273 1.621301 CTGCTGTTCCGCAAGACTCG 61.621 60.000 0.00 0.00 39.80 4.18
273 274 1.905922 GCTGCTGTTCCGCAAGACTC 61.906 60.000 0.00 0.00 39.80 3.36
275 276 1.785041 TTGCTGCTGTTCCGCAAGAC 61.785 55.000 0.00 0.00 39.80 3.01
276 277 0.890542 ATTGCTGCTGTTCCGCAAGA 60.891 50.000 0.00 0.00 45.52 3.02
277 278 0.731514 CATTGCTGCTGTTCCGCAAG 60.732 55.000 0.00 0.00 45.52 4.01
278 279 1.286570 CATTGCTGCTGTTCCGCAA 59.713 52.632 0.00 0.00 46.25 4.85
279 280 2.628696 CCATTGCTGCTGTTCCGCA 61.629 57.895 0.00 0.00 38.40 5.69
280 281 2.180017 CCATTGCTGCTGTTCCGC 59.820 61.111 0.00 0.00 0.00 5.54
281 282 2.879907 CCCATTGCTGCTGTTCCG 59.120 61.111 0.00 0.00 0.00 4.30
283 284 2.180017 CGCCCATTGCTGCTGTTC 59.820 61.111 0.00 0.00 38.05 3.18
285 286 3.058160 GTCGCCCATTGCTGCTGT 61.058 61.111 0.00 0.00 38.05 4.40
286 287 4.170062 CGTCGCCCATTGCTGCTG 62.170 66.667 0.00 0.00 38.05 4.41
290 291 0.965363 AAAATCCGTCGCCCATTGCT 60.965 50.000 0.00 0.00 38.05 3.91
291 292 0.108851 AAAAATCCGTCGCCCATTGC 60.109 50.000 0.00 0.00 0.00 3.56
308 309 0.323725 GATGAGGAGCCCCAGCAAAA 60.324 55.000 0.00 0.00 43.56 2.44
309 310 1.304282 GATGAGGAGCCCCAGCAAA 59.696 57.895 0.00 0.00 43.56 3.68
310 311 1.499913 TTGATGAGGAGCCCCAGCAA 61.500 55.000 0.00 0.00 43.56 3.91
311 312 1.499913 TTTGATGAGGAGCCCCAGCA 61.500 55.000 0.00 0.00 43.56 4.41
312 313 0.106318 ATTTGATGAGGAGCCCCAGC 60.106 55.000 0.00 0.00 40.32 4.85
313 314 2.173356 TGTATTTGATGAGGAGCCCCAG 59.827 50.000 0.00 0.00 33.88 4.45
314 315 2.204463 TGTATTTGATGAGGAGCCCCA 58.796 47.619 0.00 0.00 33.88 4.96
318 319 5.065218 ACGAAACATGTATTTGATGAGGAGC 59.935 40.000 0.00 0.00 0.00 4.70
319 320 6.668541 ACGAAACATGTATTTGATGAGGAG 57.331 37.500 0.00 0.00 0.00 3.69
322 323 7.015289 ACGAAACGAAACATGTATTTGATGAG 58.985 34.615 0.00 0.00 0.00 2.90
323 324 6.893759 ACGAAACGAAACATGTATTTGATGA 58.106 32.000 0.00 0.00 0.00 2.92
325 326 7.136119 ACAACGAAACGAAACATGTATTTGAT 58.864 30.769 0.00 0.00 0.00 2.57
326 327 6.487960 ACAACGAAACGAAACATGTATTTGA 58.512 32.000 0.00 0.00 0.00 2.69
327 328 6.631238 AGACAACGAAACGAAACATGTATTTG 59.369 34.615 0.00 2.82 0.00 2.32
328 329 6.631238 CAGACAACGAAACGAAACATGTATTT 59.369 34.615 0.00 0.00 0.00 1.40
329 330 6.133392 CAGACAACGAAACGAAACATGTATT 58.867 36.000 0.00 0.00 0.00 1.89
330 331 5.333798 CCAGACAACGAAACGAAACATGTAT 60.334 40.000 0.00 0.00 0.00 2.29
331 332 4.025563 CCAGACAACGAAACGAAACATGTA 60.026 41.667 0.00 0.00 0.00 2.29
333 334 3.001838 TCCAGACAACGAAACGAAACATG 59.998 43.478 0.00 0.00 0.00 3.21
336 337 3.661758 TTCCAGACAACGAAACGAAAC 57.338 42.857 0.00 0.00 0.00 2.78
337 338 3.002862 CCATTCCAGACAACGAAACGAAA 59.997 43.478 0.00 0.00 0.00 3.46
339 340 2.139917 CCATTCCAGACAACGAAACGA 58.860 47.619 0.00 0.00 0.00 3.85
341 342 3.139077 ACTCCATTCCAGACAACGAAAC 58.861 45.455 0.00 0.00 0.00 2.78
343 344 4.819105 ATACTCCATTCCAGACAACGAA 57.181 40.909 0.00 0.00 0.00 3.85
344 345 4.819105 AATACTCCATTCCAGACAACGA 57.181 40.909 0.00 0.00 0.00 3.85
345 346 5.163754 GGAAAATACTCCATTCCAGACAACG 60.164 44.000 0.00 0.00 41.80 4.10
346 347 5.710099 TGGAAAATACTCCATTCCAGACAAC 59.290 40.000 2.48 0.00 45.71 3.32
348 349 5.512942 TGGAAAATACTCCATTCCAGACA 57.487 39.130 2.48 0.00 45.71 3.41
353 354 7.110155 TGAGTAACTGGAAAATACTCCATTCC 58.890 38.462 9.07 0.00 44.59 3.01
354 355 8.561738 TTGAGTAACTGGAAAATACTCCATTC 57.438 34.615 9.07 0.00 44.59 2.67
355 356 9.533831 AATTGAGTAACTGGAAAATACTCCATT 57.466 29.630 9.07 7.41 44.59 3.16
403 404 9.739276 TGCCTTCTATCTAGATTTTTCTTTTGA 57.261 29.630 11.25 0.00 31.40 2.69
406 407 7.777440 CCCTGCCTTCTATCTAGATTTTTCTTT 59.223 37.037 11.25 0.00 31.40 2.52
407 408 7.286313 CCCTGCCTTCTATCTAGATTTTTCTT 58.714 38.462 11.25 0.00 31.40 2.52
408 409 6.690203 GCCCTGCCTTCTATCTAGATTTTTCT 60.690 42.308 11.25 0.00 31.40 2.52
409 410 5.471797 GCCCTGCCTTCTATCTAGATTTTTC 59.528 44.000 11.25 0.00 31.40 2.29
410 411 5.133491 AGCCCTGCCTTCTATCTAGATTTTT 59.867 40.000 11.25 0.00 31.40 1.94
411 412 4.662650 AGCCCTGCCTTCTATCTAGATTTT 59.337 41.667 11.25 0.00 31.40 1.82
412 413 4.041444 CAGCCCTGCCTTCTATCTAGATTT 59.959 45.833 11.25 0.00 31.40 2.17
413 414 3.582208 CAGCCCTGCCTTCTATCTAGATT 59.418 47.826 11.25 0.00 31.40 2.40
415 416 2.177888 TCAGCCCTGCCTTCTATCTAGA 59.822 50.000 0.00 0.00 0.00 2.43
418 419 1.885049 TTCAGCCCTGCCTTCTATCT 58.115 50.000 0.00 0.00 0.00 1.98
419 420 2.717639 TTTCAGCCCTGCCTTCTATC 57.282 50.000 0.00 0.00 0.00 2.08
420 421 4.796110 TTATTTCAGCCCTGCCTTCTAT 57.204 40.909 0.00 0.00 0.00 1.98
421 422 4.796110 ATTATTTCAGCCCTGCCTTCTA 57.204 40.909 0.00 0.00 0.00 2.10
422 423 3.677156 ATTATTTCAGCCCTGCCTTCT 57.323 42.857 0.00 0.00 0.00 2.85
423 424 5.279156 CCATTATTATTTCAGCCCTGCCTTC 60.279 44.000 0.00 0.00 0.00 3.46
424 425 4.590222 CCATTATTATTTCAGCCCTGCCTT 59.410 41.667 0.00 0.00 0.00 4.35
425 426 4.154942 CCATTATTATTTCAGCCCTGCCT 58.845 43.478 0.00 0.00 0.00 4.75
426 427 3.259123 CCCATTATTATTTCAGCCCTGCC 59.741 47.826 0.00 0.00 0.00 4.85
427 428 4.151883 TCCCATTATTATTTCAGCCCTGC 58.848 43.478 0.00 0.00 0.00 4.85
428 429 5.835280 AGTTCCCATTATTATTTCAGCCCTG 59.165 40.000 0.00 0.00 0.00 4.45
429 430 6.030727 AGTTCCCATTATTATTTCAGCCCT 57.969 37.500 0.00 0.00 0.00 5.19
430 431 6.731292 AAGTTCCCATTATTATTTCAGCCC 57.269 37.500 0.00 0.00 0.00 5.19
431 432 7.227910 TCGTAAGTTCCCATTATTATTTCAGCC 59.772 37.037 0.00 0.00 39.48 4.85
432 433 8.149973 TCGTAAGTTCCCATTATTATTTCAGC 57.850 34.615 0.00 0.00 39.48 4.26
435 436 9.429600 CGTTTCGTAAGTTCCCATTATTATTTC 57.570 33.333 0.00 0.00 39.48 2.17
436 437 9.165035 TCGTTTCGTAAGTTCCCATTATTATTT 57.835 29.630 0.00 0.00 39.48 1.40
437 438 8.721019 TCGTTTCGTAAGTTCCCATTATTATT 57.279 30.769 0.00 0.00 39.48 1.40
438 439 8.606602 GTTCGTTTCGTAAGTTCCCATTATTAT 58.393 33.333 0.00 0.00 39.48 1.28
439 440 7.201427 CGTTCGTTTCGTAAGTTCCCATTATTA 60.201 37.037 0.00 0.00 39.48 0.98
440 441 6.401367 CGTTCGTTTCGTAAGTTCCCATTATT 60.401 38.462 0.00 0.00 39.48 1.40
441 442 5.062558 CGTTCGTTTCGTAAGTTCCCATTAT 59.937 40.000 0.00 0.00 39.48 1.28
443 444 3.184986 CGTTCGTTTCGTAAGTTCCCATT 59.815 43.478 0.00 0.00 39.48 3.16
444 445 2.733026 CGTTCGTTTCGTAAGTTCCCAT 59.267 45.455 0.00 0.00 39.48 4.00
445 446 2.126467 CGTTCGTTTCGTAAGTTCCCA 58.874 47.619 0.00 0.00 39.48 4.37
446 447 1.456923 CCGTTCGTTTCGTAAGTTCCC 59.543 52.381 0.00 0.00 39.48 3.97
447 448 2.393764 TCCGTTCGTTTCGTAAGTTCC 58.606 47.619 0.00 0.00 39.48 3.62
448 449 2.406357 CCTCCGTTCGTTTCGTAAGTTC 59.594 50.000 0.00 0.00 39.48 3.01
449 450 2.034558 TCCTCCGTTCGTTTCGTAAGTT 59.965 45.455 0.00 0.00 39.48 2.66
452 453 1.666888 GCTCCTCCGTTCGTTTCGTAA 60.667 52.381 0.00 0.00 0.00 3.18
453 454 0.109597 GCTCCTCCGTTCGTTTCGTA 60.110 55.000 0.00 0.00 0.00 3.43
454 455 1.372623 GCTCCTCCGTTCGTTTCGT 60.373 57.895 0.00 0.00 0.00 3.85
455 456 0.942410 TTGCTCCTCCGTTCGTTTCG 60.942 55.000 0.00 0.00 0.00 3.46
456 457 1.223187 TTTGCTCCTCCGTTCGTTTC 58.777 50.000 0.00 0.00 0.00 2.78
457 458 1.892209 ATTTGCTCCTCCGTTCGTTT 58.108 45.000 0.00 0.00 0.00 3.60
458 459 1.804748 GAATTTGCTCCTCCGTTCGTT 59.195 47.619 0.00 0.00 0.00 3.85
459 460 1.270625 TGAATTTGCTCCTCCGTTCGT 60.271 47.619 0.00 0.00 0.00 3.85
460 461 1.438651 TGAATTTGCTCCTCCGTTCG 58.561 50.000 0.00 0.00 0.00 3.95
461 462 2.552315 TGTTGAATTTGCTCCTCCGTTC 59.448 45.455 0.00 0.00 0.00 3.95
462 463 2.554032 CTGTTGAATTTGCTCCTCCGTT 59.446 45.455 0.00 0.00 0.00 4.44
463 464 2.154462 CTGTTGAATTTGCTCCTCCGT 58.846 47.619 0.00 0.00 0.00 4.69
466 467 4.836125 TGAACTGTTGAATTTGCTCCTC 57.164 40.909 0.00 0.00 0.00 3.71
467 468 5.596836 TTTGAACTGTTGAATTTGCTCCT 57.403 34.783 0.00 0.00 0.00 3.69
468 469 6.479660 TCAATTTGAACTGTTGAATTTGCTCC 59.520 34.615 16.94 0.00 0.00 4.70
469 470 7.467557 TCAATTTGAACTGTTGAATTTGCTC 57.532 32.000 16.94 0.00 0.00 4.26
470 471 7.846644 TTCAATTTGAACTGTTGAATTTGCT 57.153 28.000 16.94 0.00 37.05 3.91
490 491 9.997482 GTTTTAAGCGAAATATCATAGGTTCAA 57.003 29.630 0.00 0.00 0.00 2.69
506 507 9.695884 GTTCATTTTTCATTTTGTTTTAAGCGA 57.304 25.926 0.00 0.00 0.00 4.93
507 508 8.942924 GGTTCATTTTTCATTTTGTTTTAAGCG 58.057 29.630 0.00 0.00 0.00 4.68
508 509 9.232082 GGGTTCATTTTTCATTTTGTTTTAAGC 57.768 29.630 0.00 0.00 0.00 3.09
512 513 8.964772 TCATGGGTTCATTTTTCATTTTGTTTT 58.035 25.926 0.00 0.00 0.00 2.43
515 516 9.962809 ATATCATGGGTTCATTTTTCATTTTGT 57.037 25.926 0.00 0.00 0.00 2.83
519 520 9.603921 GTGAATATCATGGGTTCATTTTTCATT 57.396 29.630 10.16 0.00 34.71 2.57
522 523 9.603921 ATTGTGAATATCATGGGTTCATTTTTC 57.396 29.630 10.16 0.00 34.71 2.29
525 526 9.425248 ACTATTGTGAATATCATGGGTTCATTT 57.575 29.630 10.16 3.94 34.71 2.32
526 527 8.853126 CACTATTGTGAATATCATGGGTTCATT 58.147 33.333 0.50 4.18 46.55 2.57
528 529 6.262944 GCACTATTGTGAATATCATGGGTTCA 59.737 38.462 11.66 0.00 46.55 3.18
529 530 6.488006 AGCACTATTGTGAATATCATGGGTTC 59.512 38.462 11.66 0.00 46.55 3.62
531 532 5.766670 CAGCACTATTGTGAATATCATGGGT 59.233 40.000 11.66 0.00 46.55 4.51
540 541 8.181573 CCGTAAAATTACAGCACTATTGTGAAT 58.818 33.333 11.66 0.00 38.69 2.57
542 543 6.092944 CCCGTAAAATTACAGCACTATTGTGA 59.907 38.462 11.66 0.00 38.69 3.58
543 544 6.092944 TCCCGTAAAATTACAGCACTATTGTG 59.907 38.462 2.65 2.65 39.04 3.33
544 545 6.174760 TCCCGTAAAATTACAGCACTATTGT 58.825 36.000 4.37 0.00 33.28 2.71
546 547 7.690952 TTTCCCGTAAAATTACAGCACTATT 57.309 32.000 4.37 0.00 33.28 1.73
547 548 7.875327 ATTTCCCGTAAAATTACAGCACTAT 57.125 32.000 4.37 0.00 33.28 2.12
549 550 7.338449 ACATATTTCCCGTAAAATTACAGCACT 59.662 33.333 4.37 0.00 33.28 4.40
550 551 7.477494 ACATATTTCCCGTAAAATTACAGCAC 58.523 34.615 4.37 0.00 33.28 4.40
552 553 6.849305 CGACATATTTCCCGTAAAATTACAGC 59.151 38.462 4.37 0.00 33.28 4.40
554 555 8.665643 ATCGACATATTTCCCGTAAAATTACA 57.334 30.769 4.37 0.00 33.28 2.41
557 558 8.277713 CGTAATCGACATATTTCCCGTAAAATT 58.722 33.333 0.00 0.00 39.71 1.82
563 564 4.572985 TCGTAATCGACATATTTCCCGT 57.427 40.909 0.00 0.00 41.35 5.28
564 565 5.461078 ACTTTCGTAATCGACATATTTCCCG 59.539 40.000 0.00 0.00 46.03 5.14
565 566 6.257193 ACACTTTCGTAATCGACATATTTCCC 59.743 38.462 0.00 0.00 46.03 3.97
566 567 7.230466 ACACTTTCGTAATCGACATATTTCC 57.770 36.000 0.00 0.00 46.03 3.13
570 571 5.457799 CGGAACACTTTCGTAATCGACATAT 59.542 40.000 0.00 0.00 46.03 1.78
572 573 3.611113 CGGAACACTTTCGTAATCGACAT 59.389 43.478 0.00 0.00 46.03 3.06
575 576 3.287312 ACGGAACACTTTCGTAATCGA 57.713 42.857 0.00 0.00 44.66 3.59
576 577 4.487630 CGTTACGGAACACTTTCGTAATCG 60.488 45.833 11.86 11.46 35.33 3.34
577 578 4.616802 TCGTTACGGAACACTTTCGTAATC 59.383 41.667 11.86 5.34 35.33 1.75
578 579 4.545610 TCGTTACGGAACACTTTCGTAAT 58.454 39.130 11.86 0.00 35.33 1.89
579 580 3.958704 TCGTTACGGAACACTTTCGTAA 58.041 40.909 11.86 4.49 35.06 3.18
580 581 3.617540 TCGTTACGGAACACTTTCGTA 57.382 42.857 11.86 0.00 35.06 3.43
582 583 5.499268 TTAATCGTTACGGAACACTTTCG 57.501 39.130 11.86 0.00 35.06 3.46
634 635 2.286365 TCCCATTTCAGAACGCCTTT 57.714 45.000 0.00 0.00 0.00 3.11
635 636 2.286365 TTCCCATTTCAGAACGCCTT 57.714 45.000 0.00 0.00 0.00 4.35
636 637 2.162681 CTTTCCCATTTCAGAACGCCT 58.837 47.619 0.00 0.00 0.00 5.52
637 638 1.886542 ACTTTCCCATTTCAGAACGCC 59.113 47.619 0.00 0.00 0.00 5.68
639 640 6.494893 TCATAACTTTCCCATTTCAGAACG 57.505 37.500 0.00 0.00 0.00 3.95
640 641 9.541143 TTTTTCATAACTTTCCCATTTCAGAAC 57.459 29.630 0.00 0.00 0.00 3.01
642 643 9.709495 CATTTTTCATAACTTTCCCATTTCAGA 57.291 29.630 0.00 0.00 0.00 3.27
646 647 8.567104 GCAACATTTTTCATAACTTTCCCATTT 58.433 29.630 0.00 0.00 0.00 2.32
647 648 7.718753 TGCAACATTTTTCATAACTTTCCCATT 59.281 29.630 0.00 0.00 0.00 3.16
649 650 6.586344 TGCAACATTTTTCATAACTTTCCCA 58.414 32.000 0.00 0.00 0.00 4.37
650 651 7.361116 CCATGCAACATTTTTCATAACTTTCCC 60.361 37.037 0.00 0.00 0.00 3.97
651 652 7.361116 CCCATGCAACATTTTTCATAACTTTCC 60.361 37.037 0.00 0.00 0.00 3.13
652 653 7.173047 ACCCATGCAACATTTTTCATAACTTTC 59.827 33.333 0.00 0.00 0.00 2.62
653 654 6.997476 ACCCATGCAACATTTTTCATAACTTT 59.003 30.769 0.00 0.00 0.00 2.66
656 657 6.034470 CGTACCCATGCAACATTTTTCATAAC 59.966 38.462 0.00 0.00 0.00 1.89
657 658 6.096036 CGTACCCATGCAACATTTTTCATAA 58.904 36.000 0.00 0.00 0.00 1.90
659 660 4.021544 ACGTACCCATGCAACATTTTTCAT 60.022 37.500 0.00 0.00 0.00 2.57
661 662 3.908213 ACGTACCCATGCAACATTTTTC 58.092 40.909 0.00 0.00 0.00 2.29
662 663 3.572255 AGACGTACCCATGCAACATTTTT 59.428 39.130 0.00 0.00 0.00 1.94
664 665 2.747446 GAGACGTACCCATGCAACATTT 59.253 45.455 0.00 0.00 0.00 2.32
665 666 2.356135 GAGACGTACCCATGCAACATT 58.644 47.619 0.00 0.00 0.00 2.71
666 667 1.406887 GGAGACGTACCCATGCAACAT 60.407 52.381 0.00 0.00 0.00 2.71
774 2102 5.902613 AATTGCAGTGCTTCTAAATAGCA 57.097 34.783 17.60 0.00 45.78 3.49
775 2103 6.095377 ACAAATTGCAGTGCTTCTAAATAGC 58.905 36.000 17.60 0.00 39.10 2.97
792 2120 4.121317 TGCCTCTGCAGAAAAACAAATTG 58.879 39.130 18.85 1.46 44.23 2.32
804 2133 8.530341 AAAACTAGTTTTGTTTTGCCTCTGCAG 61.530 37.037 28.38 7.63 43.70 4.41
838 2167 4.427394 TGCGCCGCACAAAATTTT 57.573 44.444 8.16 0.00 31.71 1.82
860 2189 2.098443 TCGCACATACATCTTCGCAGTA 59.902 45.455 0.00 0.00 0.00 2.74
861 2190 1.135112 TCGCACATACATCTTCGCAGT 60.135 47.619 0.00 0.00 0.00 4.40
864 2193 3.592381 ATTTCGCACATACATCTTCGC 57.408 42.857 0.00 0.00 0.00 4.70
869 2199 8.226543 TCAAAAGAAAATTTCGCACATACATC 57.773 30.769 0.00 0.00 34.02 3.06
874 2204 9.786105 AAAAATTCAAAAGAAAATTTCGCACAT 57.214 22.222 0.00 0.00 34.78 3.21
979 2309 1.991264 GGAGTAGCCTCGTTTCGTTTC 59.009 52.381 0.00 0.00 38.70 2.78
1026 2477 1.488812 CGAGAAGAGGAGAGGAGAGGA 59.511 57.143 0.00 0.00 0.00 3.71
1027 2478 1.211949 ACGAGAAGAGGAGAGGAGAGG 59.788 57.143 0.00 0.00 0.00 3.69
1028 2479 2.710096 ACGAGAAGAGGAGAGGAGAG 57.290 55.000 0.00 0.00 0.00 3.20
1029 2480 3.746114 GCATACGAGAAGAGGAGAGGAGA 60.746 52.174 0.00 0.00 0.00 3.71
1030 2481 2.552315 GCATACGAGAAGAGGAGAGGAG 59.448 54.545 0.00 0.00 0.00 3.69
1031 2482 2.577700 GCATACGAGAAGAGGAGAGGA 58.422 52.381 0.00 0.00 0.00 3.71
1119 2574 2.766229 GAGGTGAGGAGGAGGGCC 60.766 72.222 0.00 0.00 0.00 5.80
1359 2814 2.282674 AGCGTGTACCCGTCTGGA 60.283 61.111 0.00 0.00 37.49 3.86
1362 2817 3.066814 GGGAGCGTGTACCCGTCT 61.067 66.667 0.00 0.00 36.56 4.18
1626 3081 4.555709 TCGCCAAACACCGCCAGT 62.556 61.111 0.00 0.00 0.00 4.00
1629 3084 2.746277 ATCTCGCCAAACACCGCC 60.746 61.111 0.00 0.00 0.00 6.13
1785 3240 6.128982 CGCACTTGACATACATATCTAGCAAG 60.129 42.308 0.00 0.00 37.92 4.01
1830 3285 3.222354 GAGCCTGTCGAACACCCGT 62.222 63.158 0.00 0.00 0.00 5.28
1923 3378 1.005097 TGCATCCCATTGAACAGCTCT 59.995 47.619 0.00 0.00 0.00 4.09
2043 3498 2.983136 CTCGATGCCTTTACGCTCTATG 59.017 50.000 0.00 0.00 0.00 2.23
2085 3540 5.478233 TTGCGTACATATCAACCAATGAC 57.522 39.130 0.00 0.00 41.93 3.06
2112 3567 1.494721 AGAGAAGTTTCCAAGCACCCA 59.505 47.619 0.00 0.00 0.00 4.51
2197 3652 2.658285 CCTACCATGACCATGCAATGT 58.342 47.619 4.53 0.00 44.81 2.71
2604 4397 6.812656 CAGTCCATCTATCATTCAGAGCATAC 59.187 42.308 0.00 0.00 0.00 2.39
2685 4478 4.082571 CCATTCACCTCAATCAAACTGGAC 60.083 45.833 0.00 0.00 0.00 4.02
2740 4533 3.930336 TCGCATCCATATCTTGATGGTC 58.070 45.455 2.51 0.00 45.77 4.02
2776 4569 5.984233 TGTATTTGCCTCGTTAGCATAAG 57.016 39.130 0.00 0.00 40.59 1.73
2778 4571 6.238621 CCAAATGTATTTGCCTCGTTAGCATA 60.239 38.462 10.98 0.00 44.32 3.14
2786 4579 3.243501 CCCATCCAAATGTATTTGCCTCG 60.244 47.826 10.98 0.00 44.32 4.63
2943 4736 3.270877 CCACAGAAATAGGTGTAGCCAC 58.729 50.000 0.00 0.00 40.61 5.01
3054 4848 6.272318 CACTTGGCTGTTCAGATTTTTAACA 58.728 36.000 3.84 0.00 0.00 2.41
3119 4913 0.188342 AAGAGGCACCCAACAATGGT 59.812 50.000 0.00 0.00 46.01 3.55
3146 4941 3.470709 TCAAGAACTGAAGAGTGGCAAG 58.529 45.455 0.00 0.00 30.61 4.01
3147 4942 3.558931 TCAAGAACTGAAGAGTGGCAA 57.441 42.857 0.00 0.00 30.61 4.52
3152 4947 6.994496 TCAATCATGTTCAAGAACTGAAGAGT 59.006 34.615 13.49 3.89 44.83 3.24
3182 4977 4.461781 CCAGGAGTTCTGATGCTGAAATTT 59.538 41.667 0.00 0.00 46.18 1.82
3207 5002 1.909302 GGTCAGAGTCCATTCCTCCAA 59.091 52.381 0.00 0.00 0.00 3.53
3268 5063 7.962441 ACTTTTTGCCTCACCTTGTATAAAAT 58.038 30.769 0.00 0.00 0.00 1.82
3454 5263 8.944029 AGAACAAAGAACTAATGATGTCTCATG 58.056 33.333 0.00 0.00 41.34 3.07
3481 5290 8.608844 AACTAACAAGTTGAGTGAAAGATAGG 57.391 34.615 10.54 0.00 0.00 2.57
3600 5539 8.792633 TGAATTTAACTTACAATCTCACCTTGG 58.207 33.333 0.00 0.00 0.00 3.61
3640 5579 3.502211 ACAGCCATGCAAGTACTAAACAC 59.498 43.478 0.00 0.00 0.00 3.32
3658 5597 6.969473 GCTTCCAGAATGAATTTAACTACAGC 59.031 38.462 0.00 0.00 39.69 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.