Multiple sequence alignment - TraesCS2B01G364800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G364800 chr2B 100.000 4850 0 0 1 4850 519013782 519018631 0.000000e+00 8957
1 TraesCS2B01G364800 chr2B 91.837 147 10 2 4695 4841 729523332 729523476 2.290000e-48 204
2 TraesCS2B01G364800 chr2D 95.917 4286 106 23 324 4593 441525506 441529738 0.000000e+00 6881
3 TraesCS2B01G364800 chr2D 95.349 258 8 4 86 340 441525301 441525557 1.630000e-109 407
4 TraesCS2B01G364800 chr2D 95.556 135 6 0 4707 4841 619720680 619720546 2.940000e-52 217
5 TraesCS2B01G364800 chr2D 94.118 119 7 0 4596 4714 441529705 441529823 1.070000e-41 182
6 TraesCS2B01G364800 chr2D 97.647 85 2 0 2 86 441525149 441525233 3.910000e-31 147
7 TraesCS2B01G364800 chr2A 95.589 4217 121 21 391 4593 585135796 585139961 0.000000e+00 6697
8 TraesCS2B01G364800 chr2A 88.281 256 17 9 86 334 585135546 585135795 1.320000e-75 294
9 TraesCS2B01G364800 chr2A 94.958 119 6 0 4596 4714 585139928 585140046 2.300000e-43 187
10 TraesCS2B01G364800 chr3B 91.982 1085 33 17 662 1736 75589829 75588789 0.000000e+00 1472
11 TraesCS2B01G364800 chr6B 79.881 671 110 20 2126 2788 435305938 435306591 7.350000e-128 468
12 TraesCS2B01G364800 chr6A 79.790 668 116 16 2126 2788 390732440 390733093 7.350000e-128 468
13 TraesCS2B01G364800 chr6A 97.638 127 3 0 4715 4841 297710704 297710578 8.170000e-53 219
14 TraesCS2B01G364800 chr6D 79.613 672 110 19 2126 2788 273089087 273089740 1.590000e-124 457
15 TraesCS2B01G364800 chr4B 97.656 128 3 0 4714 4841 446339204 446339077 2.270000e-53 220
16 TraesCS2B01G364800 chr7D 97.638 127 3 0 4715 4841 150359427 150359301 8.170000e-53 219
17 TraesCS2B01G364800 chr3A 96.923 130 4 0 4712 4841 644809258 644809129 8.170000e-53 219
18 TraesCS2B01G364800 chr1A 95.522 134 6 0 4712 4845 547571808 547571941 1.060000e-51 215
19 TraesCS2B01G364800 chr1A 91.667 156 6 4 4687 4841 32188014 32188163 4.920000e-50 209
20 TraesCS2B01G364800 chr5B 93.617 141 7 2 4703 4841 493512582 493512442 4.920000e-50 209


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G364800 chr2B 519013782 519018631 4849 False 8957.000000 8957 100.000000 1 4850 1 chr2B.!!$F1 4849
1 TraesCS2B01G364800 chr2D 441525149 441529823 4674 False 1904.250000 6881 95.757750 2 4714 4 chr2D.!!$F1 4712
2 TraesCS2B01G364800 chr2A 585135546 585140046 4500 False 2392.666667 6697 92.942667 86 4714 3 chr2A.!!$F1 4628
3 TraesCS2B01G364800 chr3B 75588789 75589829 1040 True 1472.000000 1472 91.982000 662 1736 1 chr3B.!!$R1 1074
4 TraesCS2B01G364800 chr6B 435305938 435306591 653 False 468.000000 468 79.881000 2126 2788 1 chr6B.!!$F1 662
5 TraesCS2B01G364800 chr6A 390732440 390733093 653 False 468.000000 468 79.790000 2126 2788 1 chr6A.!!$F1 662
6 TraesCS2B01G364800 chr6D 273089087 273089740 653 False 457.000000 457 79.613000 2126 2788 1 chr6D.!!$F1 662

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
511 586 2.042433 ACCCCGGAATCCTTTGATGAAA 59.958 45.455 0.73 0.0 0.00 2.69 F
1470 1570 2.151202 CCGTTACATTCTGGTGCAGTT 58.849 47.619 0.00 0.0 32.61 3.16 F
2122 2222 1.073722 CCTGAGCCAGTGAAGCCAA 59.926 57.895 0.00 0.0 0.00 4.52 F
3495 3604 2.488937 TGCACGAATCTTGCATTGTCAT 59.511 40.909 10.45 0.0 45.06 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2094 2194 0.622665 CTGGCTCAGGGGTTTCAGAT 59.377 55.000 0.00 0.0 0.00 2.90 R
2857 2965 1.941668 GCCAAGGAGGAGAAACAGACG 60.942 57.143 0.00 0.0 41.22 4.18 R
3568 3677 1.453762 GATGCTCCAATGCAGCCTCC 61.454 60.000 0.00 0.0 46.71 4.30 R
4714 4828 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.0 46.06 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 2.141517 CTTCACACAAGGAGCACTCAG 58.858 52.381 0.00 0.00 0.00 3.35
127 196 3.778075 TCTTAGGCCTATGCTTGTAACCA 59.222 43.478 14.74 0.00 37.74 3.67
292 364 3.523157 TCCCATGAAACTGGAGCATAAGA 59.477 43.478 0.00 0.00 38.69 2.10
312 384 6.808008 AAGATGTCAATCATTTCTTGTCGT 57.192 33.333 0.00 0.00 36.83 4.34
342 415 9.909644 AAAGAAGAAGATGTCAATCATTTCTTG 57.090 29.630 15.29 0.00 40.06 3.02
343 416 8.632906 AGAAGAAGATGTCAATCATTTCTTGT 57.367 30.769 15.29 11.67 40.06 3.16
344 417 8.728833 AGAAGAAGATGTCAATCATTTCTTGTC 58.271 33.333 15.29 8.16 40.06 3.18
345 418 7.069852 AGAAGATGTCAATCATTTCTTGTCG 57.930 36.000 0.00 0.00 36.83 4.35
346 419 5.227238 AGATGTCAATCATTTCTTGTCGC 57.773 39.130 0.00 0.00 36.83 5.19
347 420 4.696877 AGATGTCAATCATTTCTTGTCGCA 59.303 37.500 0.00 0.00 36.83 5.10
348 421 4.827304 TGTCAATCATTTCTTGTCGCAA 57.173 36.364 0.00 0.00 0.00 4.85
349 422 5.180367 TGTCAATCATTTCTTGTCGCAAA 57.820 34.783 0.00 0.00 0.00 3.68
350 423 5.214417 TGTCAATCATTTCTTGTCGCAAAG 58.786 37.500 0.00 0.00 0.00 2.77
351 424 5.008514 TGTCAATCATTTCTTGTCGCAAAGA 59.991 36.000 0.00 0.00 34.36 2.52
352 425 5.914635 GTCAATCATTTCTTGTCGCAAAGAA 59.085 36.000 7.91 7.91 42.89 2.52
353 426 6.087291 GTCAATCATTTCTTGTCGCAAAGAAG 59.913 38.462 10.83 3.71 44.68 2.85
354 427 5.947228 ATCATTTCTTGTCGCAAAGAAGA 57.053 34.783 10.83 7.73 44.68 2.87
355 428 5.749596 TCATTTCTTGTCGCAAAGAAGAA 57.250 34.783 10.83 4.79 44.68 2.52
356 429 5.751680 TCATTTCTTGTCGCAAAGAAGAAG 58.248 37.500 10.83 6.92 45.08 2.85
357 430 5.527214 TCATTTCTTGTCGCAAAGAAGAAGA 59.473 36.000 10.83 8.49 45.08 2.87
369 442 6.085573 GCAAAGAAGAAGAAGAAGAAGATGC 58.914 40.000 0.00 0.00 0.00 3.91
379 452 8.585471 AAGAAGAAGAAGATGCCAATCATTTA 57.415 30.769 0.00 0.00 35.05 1.40
481 556 3.717294 CCCAACTCCGACCCCCAG 61.717 72.222 0.00 0.00 0.00 4.45
482 557 3.717294 CCAACTCCGACCCCCAGG 61.717 72.222 0.00 0.00 40.04 4.45
483 558 2.606519 CAACTCCGACCCCCAGGA 60.607 66.667 0.00 0.00 36.73 3.86
484 559 2.606826 AACTCCGACCCCCAGGAC 60.607 66.667 0.00 0.00 36.73 3.85
485 560 3.175714 AACTCCGACCCCCAGGACT 62.176 63.158 0.00 0.00 36.73 3.85
486 561 3.077556 CTCCGACCCCCAGGACTG 61.078 72.222 0.00 0.00 36.73 3.51
511 586 2.042433 ACCCCGGAATCCTTTGATGAAA 59.958 45.455 0.73 0.00 0.00 2.69
514 589 3.119495 CCCGGAATCCTTTGATGAAACAC 60.119 47.826 0.73 0.00 0.00 3.32
535 610 2.793237 CGTTTCGAACAAAACCACCAGG 60.793 50.000 0.00 0.00 36.06 4.45
604 681 3.818121 CTGCGAAACCACGTCCCCA 62.818 63.158 0.00 0.00 35.59 4.96
605 682 2.592287 GCGAAACCACGTCCCCAA 60.592 61.111 0.00 0.00 35.59 4.12
785 871 2.840102 CCTCCCGGAATCCGCTCT 60.840 66.667 17.50 0.00 46.86 4.09
1224 1324 3.864686 CGTTCGCATCCGCCCAAG 61.865 66.667 0.00 0.00 33.11 3.61
1470 1570 2.151202 CCGTTACATTCTGGTGCAGTT 58.849 47.619 0.00 0.00 32.61 3.16
1698 1798 6.668283 AGGATAGTAAAGTGCTTGAGGTAGAA 59.332 38.462 0.00 0.00 0.00 2.10
1966 2066 3.939042 AGGTCATCTGATTCAGGGAGAT 58.061 45.455 13.59 0.00 31.51 2.75
2060 2160 6.292381 GCTAGTGTTAATGGTTCAGCTAATCG 60.292 42.308 0.00 0.00 0.00 3.34
2073 2173 6.307031 TCAGCTAATCGTCTATCTTCTGAC 57.693 41.667 0.00 0.00 0.00 3.51
2094 2194 1.219124 GGAGGATGAAGTGCGCAGA 59.781 57.895 12.22 0.00 0.00 4.26
2121 2221 2.752358 CCTGAGCCAGTGAAGCCA 59.248 61.111 0.00 0.00 0.00 4.75
2122 2222 1.073722 CCTGAGCCAGTGAAGCCAA 59.926 57.895 0.00 0.00 0.00 4.52
2250 2350 6.609212 AGGATAAGAAGACTGCTGAGATTGTA 59.391 38.462 0.00 0.00 0.00 2.41
3091 3199 9.866798 CATATTCTTCTATGTTGCTGATAGCTA 57.133 33.333 0.00 0.00 42.97 3.32
3118 3226 7.212976 AGCCGCCAATATAGATATGTATTCAG 58.787 38.462 0.00 0.00 0.00 3.02
3475 3584 5.230942 ACTCTTCAATGGAACTCGTAACTG 58.769 41.667 0.00 0.00 0.00 3.16
3495 3604 2.488937 TGCACGAATCTTGCATTGTCAT 59.511 40.909 10.45 0.00 45.06 3.06
3547 3656 6.699575 ACTGACTAAGCACACTTGATTTTT 57.300 33.333 0.00 0.00 36.57 1.94
3568 3677 3.885358 TCTTGTACAGCGTATATCAGCG 58.115 45.455 0.00 0.00 38.61 5.18
4233 4343 8.946085 TCAGTGTGTTGGATTTACAATAAGATC 58.054 33.333 0.00 0.00 32.24 2.75
4415 4525 7.913674 ATTCAAGAGTCATTTACCTCAAGAC 57.086 36.000 0.00 0.00 0.00 3.01
4482 4596 4.229582 TCATACCCAAGGGCTCTGTTTTAT 59.770 41.667 4.70 0.00 39.32 1.40
4553 4667 9.415544 CATTAAGAACTCCCAATTCTGAAAAAG 57.584 33.333 0.00 0.00 36.52 2.27
4555 4669 5.458595 AGAACTCCCAATTCTGAAAAAGGT 58.541 37.500 0.00 0.00 35.06 3.50
4556 4670 5.302823 AGAACTCCCAATTCTGAAAAAGGTG 59.697 40.000 0.00 0.00 35.06 4.00
4557 4671 4.803452 ACTCCCAATTCTGAAAAAGGTGA 58.197 39.130 0.00 0.00 0.00 4.02
4559 4673 5.660864 ACTCCCAATTCTGAAAAAGGTGAAA 59.339 36.000 0.00 0.00 0.00 2.69
4560 4674 6.156083 ACTCCCAATTCTGAAAAAGGTGAAAA 59.844 34.615 0.00 0.00 0.00 2.29
4561 4675 6.951971 TCCCAATTCTGAAAAAGGTGAAAAA 58.048 32.000 0.00 0.00 0.00 1.94
4592 4706 8.891720 AGAATGATAGAGAATGAAGAAAAGTGC 58.108 33.333 0.00 0.00 0.00 4.40
4593 4707 6.992063 TGATAGAGAATGAAGAAAAGTGCC 57.008 37.500 0.00 0.00 0.00 5.01
4594 4708 5.582269 TGATAGAGAATGAAGAAAAGTGCCG 59.418 40.000 0.00 0.00 0.00 5.69
4622 4736 8.925161 AAAAGAGAATGATAGAGAACGAAGAG 57.075 34.615 0.00 0.00 0.00 2.85
4634 4748 3.312697 AGAACGAAGAGAAGTGCAAAACC 59.687 43.478 0.00 0.00 0.00 3.27
4641 4755 5.036117 AGAGAAGTGCAAAACCTGACTTA 57.964 39.130 0.00 0.00 30.40 2.24
4647 4761 6.076981 AGTGCAAAACCTGACTTAAATGAG 57.923 37.500 0.00 0.00 0.00 2.90
4653 4767 2.236395 ACCTGACTTAAATGAGGACCCG 59.764 50.000 0.00 0.00 0.00 5.28
4719 4833 7.393841 ACAAGTCAGTGTTAGTATCTACTCC 57.606 40.000 0.00 0.00 37.73 3.85
4720 4834 6.377712 ACAAGTCAGTGTTAGTATCTACTCCC 59.622 42.308 0.00 0.00 37.73 4.30
4721 4835 6.330178 AGTCAGTGTTAGTATCTACTCCCT 57.670 41.667 0.00 0.00 37.73 4.20
4722 4836 6.358991 AGTCAGTGTTAGTATCTACTCCCTC 58.641 44.000 0.00 0.00 37.73 4.30
4723 4837 5.532032 GTCAGTGTTAGTATCTACTCCCTCC 59.468 48.000 0.00 0.00 37.73 4.30
4724 4838 4.515944 CAGTGTTAGTATCTACTCCCTCCG 59.484 50.000 0.00 0.00 37.73 4.63
4725 4839 4.165758 AGTGTTAGTATCTACTCCCTCCGT 59.834 45.833 0.00 0.00 37.73 4.69
4726 4840 4.514816 GTGTTAGTATCTACTCCCTCCGTC 59.485 50.000 0.00 0.00 37.73 4.79
4727 4841 2.955342 AGTATCTACTCCCTCCGTCC 57.045 55.000 0.00 0.00 0.00 4.79
4728 4842 1.072015 AGTATCTACTCCCTCCGTCCG 59.928 57.143 0.00 0.00 0.00 4.79
4729 4843 0.399454 TATCTACTCCCTCCGTCCGG 59.601 60.000 0.00 0.00 0.00 5.14
4730 4844 1.351080 ATCTACTCCCTCCGTCCGGA 61.351 60.000 0.00 0.00 42.90 5.14
4731 4845 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
4732 4846 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
4733 4847 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4734 4848 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4735 4849 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4736 4850 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4737 4851 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4738 4852 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4739 4853 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4740 4854 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4741 4855 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4742 4856 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
4743 4857 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
4744 4858 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
4745 4859 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
4746 4860 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
4747 4861 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
4748 4862 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
4749 4863 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
4750 4864 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
4751 4865 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
4752 4866 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
4753 4867 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
4759 4873 7.614494 ACTTGTCATCAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
4760 4874 6.543430 TGTCATCAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
4761 4875 6.259893 TGTCATCAAAATGGATAAAAGGGGA 58.740 36.000 0.00 0.00 33.42 4.81
4762 4876 6.902416 TGTCATCAAAATGGATAAAAGGGGAT 59.098 34.615 0.00 0.00 33.42 3.85
4763 4877 7.147689 TGTCATCAAAATGGATAAAAGGGGATG 60.148 37.037 0.00 0.00 33.42 3.51
4764 4878 6.902416 TCATCAAAATGGATAAAAGGGGATGT 59.098 34.615 0.00 0.00 33.42 3.06
4765 4879 8.064389 TCATCAAAATGGATAAAAGGGGATGTA 58.936 33.333 0.00 0.00 33.42 2.29
4766 4880 8.873144 CATCAAAATGGATAAAAGGGGATGTAT 58.127 33.333 0.00 0.00 0.00 2.29
4767 4881 8.477419 TCAAAATGGATAAAAGGGGATGTATC 57.523 34.615 0.00 0.00 0.00 2.24
4768 4882 8.288812 TCAAAATGGATAAAAGGGGATGTATCT 58.711 33.333 0.00 0.00 0.00 1.98
4769 4883 8.362639 CAAAATGGATAAAAGGGGATGTATCTG 58.637 37.037 0.00 0.00 0.00 2.90
4770 4884 5.582950 TGGATAAAAGGGGATGTATCTGG 57.417 43.478 0.00 0.00 0.00 3.86
4771 4885 5.231552 TGGATAAAAGGGGATGTATCTGGA 58.768 41.667 0.00 0.00 0.00 3.86
4772 4886 5.857283 TGGATAAAAGGGGATGTATCTGGAT 59.143 40.000 0.00 0.00 0.00 3.41
4773 4887 6.183347 GGATAAAAGGGGATGTATCTGGATG 58.817 44.000 0.00 0.00 0.00 3.51
4774 4888 6.240292 GGATAAAAGGGGATGTATCTGGATGT 60.240 42.308 0.00 0.00 0.00 3.06
4775 4889 7.037586 GGATAAAAGGGGATGTATCTGGATGTA 60.038 40.741 0.00 0.00 0.00 2.29
4776 4890 6.786843 AAAAGGGGATGTATCTGGATGTAT 57.213 37.500 0.00 0.00 0.00 2.29
4777 4891 6.786843 AAAGGGGATGTATCTGGATGTATT 57.213 37.500 0.00 0.00 0.00 1.89
4778 4892 6.786843 AAGGGGATGTATCTGGATGTATTT 57.213 37.500 0.00 0.00 0.00 1.40
4779 4893 6.786843 AGGGGATGTATCTGGATGTATTTT 57.213 37.500 0.00 0.00 0.00 1.82
4780 4894 7.888514 AGGGGATGTATCTGGATGTATTTTA 57.111 36.000 0.00 0.00 0.00 1.52
4781 4895 7.922382 AGGGGATGTATCTGGATGTATTTTAG 58.078 38.462 0.00 0.00 0.00 1.85
4782 4896 7.517604 AGGGGATGTATCTGGATGTATTTTAGT 59.482 37.037 0.00 0.00 0.00 2.24
4783 4897 8.164070 GGGGATGTATCTGGATGTATTTTAGTT 58.836 37.037 0.00 0.00 0.00 2.24
4784 4898 9.220767 GGGATGTATCTGGATGTATTTTAGTTC 57.779 37.037 0.00 0.00 0.00 3.01
4806 4920 9.268282 AGTTCTAGATACACCTCTTTTTATCCA 57.732 33.333 0.00 0.00 0.00 3.41
4812 4926 9.753674 AGATACACCTCTTTTTATCCATTTTGA 57.246 29.630 0.00 0.00 0.00 2.69
4815 4929 8.421249 ACACCTCTTTTTATCCATTTTGATGA 57.579 30.769 0.00 0.00 0.00 2.92
4816 4930 8.306761 ACACCTCTTTTTATCCATTTTGATGAC 58.693 33.333 0.00 0.00 0.00 3.06
4817 4931 8.306038 CACCTCTTTTTATCCATTTTGATGACA 58.694 33.333 0.00 0.00 0.00 3.58
4818 4932 8.869109 ACCTCTTTTTATCCATTTTGATGACAA 58.131 29.630 0.00 0.00 0.00 3.18
4819 4933 9.362539 CCTCTTTTTATCCATTTTGATGACAAG 57.637 33.333 0.00 0.00 37.32 3.16
4820 4934 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
4827 4941 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
4828 4942 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
4829 4943 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
4830 4944 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
4831 4945 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
4832 4946 4.811908 TGATGACAAGTATTTTCGGACGA 58.188 39.130 0.00 0.00 0.00 4.20
4833 4947 5.231702 TGATGACAAGTATTTTCGGACGAA 58.768 37.500 2.62 2.62 0.00 3.85
4834 4948 5.347635 TGATGACAAGTATTTTCGGACGAAG 59.652 40.000 7.25 0.00 35.38 3.79
4835 4949 3.991773 TGACAAGTATTTTCGGACGAAGG 59.008 43.478 7.25 0.00 35.38 3.46
4836 4950 3.332034 ACAAGTATTTTCGGACGAAGGG 58.668 45.455 7.25 0.00 35.38 3.95
4837 4951 3.007182 ACAAGTATTTTCGGACGAAGGGA 59.993 43.478 7.25 0.00 35.38 4.20
4838 4952 3.521947 AGTATTTTCGGACGAAGGGAG 57.478 47.619 7.25 0.00 35.38 4.30
4839 4953 2.830321 AGTATTTTCGGACGAAGGGAGT 59.170 45.455 7.25 0.00 35.38 3.85
4840 4954 4.019174 AGTATTTTCGGACGAAGGGAGTA 58.981 43.478 7.25 0.00 35.38 2.59
4841 4955 3.967332 ATTTTCGGACGAAGGGAGTAA 57.033 42.857 7.25 0.00 35.38 2.24
4842 4956 2.730550 TTTCGGACGAAGGGAGTAAC 57.269 50.000 7.25 0.00 35.38 2.50
4843 4957 1.619654 TTCGGACGAAGGGAGTAACA 58.380 50.000 2.62 0.00 0.00 2.41
4844 4958 1.171308 TCGGACGAAGGGAGTAACAG 58.829 55.000 0.00 0.00 0.00 3.16
4845 4959 1.171308 CGGACGAAGGGAGTAACAGA 58.829 55.000 0.00 0.00 0.00 3.41
4846 4960 1.135460 CGGACGAAGGGAGTAACAGAC 60.135 57.143 0.00 0.00 0.00 3.51
4847 4961 1.891150 GGACGAAGGGAGTAACAGACA 59.109 52.381 0.00 0.00 0.00 3.41
4848 4962 2.496470 GGACGAAGGGAGTAACAGACAT 59.504 50.000 0.00 0.00 0.00 3.06
4849 4963 3.056035 GGACGAAGGGAGTAACAGACATT 60.056 47.826 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 2.408368 GGCAATGCGCAAAAGTTACTTC 59.592 45.455 17.11 0.00 45.17 3.01
212 282 4.771114 ATTATGGGATCAGGTCGTTTCA 57.229 40.909 0.00 0.00 0.00 2.69
319 392 7.691463 CGACAAGAAATGATTGACATCTTCTTC 59.309 37.037 0.00 0.00 40.21 2.87
320 393 7.524912 CGACAAGAAATGATTGACATCTTCTT 58.475 34.615 0.00 0.00 41.29 2.52
321 394 6.402983 GCGACAAGAAATGATTGACATCTTCT 60.403 38.462 0.00 0.00 38.38 2.85
322 395 5.736358 GCGACAAGAAATGATTGACATCTTC 59.264 40.000 0.00 0.00 38.38 2.87
323 396 5.181811 TGCGACAAGAAATGATTGACATCTT 59.818 36.000 0.00 0.00 38.38 2.40
324 397 4.696877 TGCGACAAGAAATGATTGACATCT 59.303 37.500 0.00 0.00 38.38 2.90
325 398 4.973396 TGCGACAAGAAATGATTGACATC 58.027 39.130 0.00 0.00 38.38 3.06
326 399 5.375417 TTGCGACAAGAAATGATTGACAT 57.625 34.783 0.00 0.00 41.45 3.06
327 400 4.827304 TTGCGACAAGAAATGATTGACA 57.173 36.364 0.00 0.00 0.00 3.58
328 401 5.451908 TCTTTGCGACAAGAAATGATTGAC 58.548 37.500 0.00 0.00 0.00 3.18
329 402 5.687770 TCTTTGCGACAAGAAATGATTGA 57.312 34.783 0.00 0.00 0.00 2.57
330 403 6.144854 TCTTCTTTGCGACAAGAAATGATTG 58.855 36.000 9.85 0.00 34.94 2.67
331 404 6.317789 TCTTCTTTGCGACAAGAAATGATT 57.682 33.333 9.85 0.00 34.94 2.57
332 405 5.947228 TCTTCTTTGCGACAAGAAATGAT 57.053 34.783 9.85 0.00 34.94 2.45
333 406 5.527214 TCTTCTTCTTTGCGACAAGAAATGA 59.473 36.000 9.85 3.82 36.07 2.57
334 407 5.751680 TCTTCTTCTTTGCGACAAGAAATG 58.248 37.500 9.85 1.96 36.07 2.32
335 408 6.260936 TCTTCTTCTTCTTTGCGACAAGAAAT 59.739 34.615 9.85 0.00 36.07 2.17
336 409 5.584649 TCTTCTTCTTCTTTGCGACAAGAAA 59.415 36.000 9.85 0.00 36.07 2.52
337 410 5.116180 TCTTCTTCTTCTTTGCGACAAGAA 58.884 37.500 8.64 8.64 35.38 2.52
338 411 4.693283 TCTTCTTCTTCTTTGCGACAAGA 58.307 39.130 0.00 0.00 0.00 3.02
339 412 5.235186 TCTTCTTCTTCTTCTTTGCGACAAG 59.765 40.000 0.00 0.00 0.00 3.16
340 413 5.116180 TCTTCTTCTTCTTCTTTGCGACAA 58.884 37.500 0.00 0.00 0.00 3.18
341 414 4.693283 TCTTCTTCTTCTTCTTTGCGACA 58.307 39.130 0.00 0.00 0.00 4.35
342 415 5.463724 TCTTCTTCTTCTTCTTCTTTGCGAC 59.536 40.000 0.00 0.00 0.00 5.19
343 416 5.601662 TCTTCTTCTTCTTCTTCTTTGCGA 58.398 37.500 0.00 0.00 0.00 5.10
344 417 5.914085 TCTTCTTCTTCTTCTTCTTTGCG 57.086 39.130 0.00 0.00 0.00 4.85
345 418 6.085573 GCATCTTCTTCTTCTTCTTCTTTGC 58.914 40.000 0.00 0.00 0.00 3.68
346 419 6.206243 TGGCATCTTCTTCTTCTTCTTCTTTG 59.794 38.462 0.00 0.00 0.00 2.77
347 420 6.302269 TGGCATCTTCTTCTTCTTCTTCTTT 58.698 36.000 0.00 0.00 0.00 2.52
348 421 5.874093 TGGCATCTTCTTCTTCTTCTTCTT 58.126 37.500 0.00 0.00 0.00 2.52
349 422 5.495926 TGGCATCTTCTTCTTCTTCTTCT 57.504 39.130 0.00 0.00 0.00 2.85
350 423 6.373774 TGATTGGCATCTTCTTCTTCTTCTTC 59.626 38.462 0.00 0.00 0.00 2.87
351 424 6.243900 TGATTGGCATCTTCTTCTTCTTCTT 58.756 36.000 0.00 0.00 0.00 2.52
352 425 5.813383 TGATTGGCATCTTCTTCTTCTTCT 58.187 37.500 0.00 0.00 0.00 2.85
353 426 6.696441 ATGATTGGCATCTTCTTCTTCTTC 57.304 37.500 0.00 0.00 28.85 2.87
354 427 7.477945 AAATGATTGGCATCTTCTTCTTCTT 57.522 32.000 0.00 0.00 35.78 2.52
355 428 8.585471 TTAAATGATTGGCATCTTCTTCTTCT 57.415 30.769 0.00 0.00 35.78 2.85
356 429 9.643693 TTTTAAATGATTGGCATCTTCTTCTTC 57.356 29.630 0.00 0.00 35.78 2.87
488 563 0.180406 ATCAAAGGATTCCGGGGTCG 59.820 55.000 0.00 0.00 0.00 4.79
489 564 1.211949 TCATCAAAGGATTCCGGGGTC 59.788 52.381 0.00 0.00 0.00 4.46
490 565 1.295020 TCATCAAAGGATTCCGGGGT 58.705 50.000 0.00 0.00 0.00 4.95
491 566 2.427095 GTTTCATCAAAGGATTCCGGGG 59.573 50.000 0.00 0.00 0.00 5.73
492 567 3.088532 TGTTTCATCAAAGGATTCCGGG 58.911 45.455 0.00 0.00 0.00 5.73
493 568 3.426159 CGTGTTTCATCAAAGGATTCCGG 60.426 47.826 0.00 0.00 0.00 5.14
494 569 3.188460 ACGTGTTTCATCAAAGGATTCCG 59.812 43.478 0.00 0.00 0.00 4.30
511 586 2.414426 GGTGGTTTTGTTCGAAACGTGT 60.414 45.455 0.00 0.00 39.76 4.49
514 589 2.446282 CTGGTGGTTTTGTTCGAAACG 58.554 47.619 0.00 0.00 39.76 3.60
604 681 4.280019 AAACCCGCGGGCTCCTTT 62.280 61.111 43.58 31.35 39.32 3.11
605 682 4.717313 GAAACCCGCGGGCTCCTT 62.717 66.667 43.58 29.57 39.32 3.36
850 942 0.815734 GATCTGACCTCGGGTTCGAA 59.184 55.000 0.00 0.00 45.47 3.71
962 1062 1.148759 GCGGAGGAATCAGAGCGAAC 61.149 60.000 0.00 0.00 0.00 3.95
970 1070 4.207281 CGAGCCGCGGAGGAATCA 62.207 66.667 33.48 0.00 45.00 2.57
1023 1123 0.395311 TGGCCTCGTAGTCCCTGTAG 60.395 60.000 3.32 0.00 0.00 2.74
1209 1309 2.125147 CTCTTGGGCGGATGCGAA 60.125 61.111 12.10 0.00 44.10 4.70
1224 1324 4.200283 CTCGTGGAGAGGCGGCTC 62.200 72.222 30.15 30.15 43.20 4.70
1470 1570 3.263369 TCCACCACTCCCTTTACAGTA 57.737 47.619 0.00 0.00 0.00 2.74
1698 1798 6.666113 CCTCTTCCTCCTTTACTTTACTCTCT 59.334 42.308 0.00 0.00 0.00 3.10
1966 2066 1.619654 TCCTTCTCGTCGTTACCCAA 58.380 50.000 0.00 0.00 0.00 4.12
2060 2160 3.811083 TCCTCCGAGTCAGAAGATAGAC 58.189 50.000 0.00 0.00 35.02 2.59
2073 2173 1.880340 GCGCACTTCATCCTCCGAG 60.880 63.158 0.30 0.00 0.00 4.63
2094 2194 0.622665 CTGGCTCAGGGGTTTCAGAT 59.377 55.000 0.00 0.00 0.00 2.90
2121 2221 6.091849 GCAGCATATTGATACATCGATGAGTT 59.908 38.462 31.33 14.85 33.15 3.01
2122 2222 5.579904 GCAGCATATTGATACATCGATGAGT 59.420 40.000 31.33 18.31 33.15 3.41
2250 2350 4.015084 CCATCTTGACCTTCTTCAATGCT 58.985 43.478 0.00 0.00 34.96 3.79
2808 2916 9.608617 GAACTTACAGTGAAAAATTAAGGTAGC 57.391 33.333 0.00 0.00 0.00 3.58
2843 2951 7.359014 GGAGAAACAGACGTTAGTGTGATTTAC 60.359 40.741 2.81 0.00 43.54 2.01
2857 2965 1.941668 GCCAAGGAGGAGAAACAGACG 60.942 57.143 0.00 0.00 41.22 4.18
3056 3164 7.628235 CAACATAGAAGAATATGCACTGTGAG 58.372 38.462 12.86 0.00 36.75 3.51
3091 3199 8.870116 TGAATACATATCTATATTGGCGGCTAT 58.130 33.333 11.43 11.25 0.00 2.97
3235 3343 5.503520 GCAGGTATAAGAAACATACGGTTGC 60.504 44.000 0.00 0.00 40.35 4.17
3475 3584 2.617250 TGACAATGCAAGATTCGTGC 57.383 45.000 16.36 16.36 42.55 5.34
3534 3643 5.396362 CGCTGTACAAGAAAAATCAAGTGTG 59.604 40.000 0.00 0.00 0.00 3.82
3547 3656 3.304458 CCGCTGATATACGCTGTACAAGA 60.304 47.826 0.00 0.00 0.00 3.02
3568 3677 1.453762 GATGCTCCAATGCAGCCTCC 61.454 60.000 0.00 0.00 46.71 4.30
4193 4303 5.772825 ACACACTGAGCATTGTTTACAAT 57.227 34.783 2.33 2.33 46.62 2.71
4257 4367 4.664150 AAAGAGCACTATAGGAGCAGAC 57.336 45.455 18.07 10.69 0.00 3.51
4401 4511 7.066163 TCAGCAATACATGTCTTGAGGTAAATG 59.934 37.037 23.76 11.48 0.00 2.32
4402 4512 7.112122 TCAGCAATACATGTCTTGAGGTAAAT 58.888 34.615 23.76 0.00 0.00 1.40
4511 4625 8.995220 AGTTCTTAATGCTACGAACATGTTTAA 58.005 29.630 13.36 3.94 38.26 1.52
4515 4629 5.581085 GGAGTTCTTAATGCTACGAACATGT 59.419 40.000 0.00 0.00 38.26 3.21
4528 4642 8.588472 CCTTTTTCAGAATTGGGAGTTCTTAAT 58.412 33.333 0.00 0.00 33.82 1.40
4529 4643 7.563556 ACCTTTTTCAGAATTGGGAGTTCTTAA 59.436 33.333 0.00 0.00 33.82 1.85
4566 4680 8.891720 GCACTTTTCTTCATTCTCTATCATTCT 58.108 33.333 0.00 0.00 0.00 2.40
4567 4681 8.127954 GGCACTTTTCTTCATTCTCTATCATTC 58.872 37.037 0.00 0.00 0.00 2.67
4568 4682 7.201679 CGGCACTTTTCTTCATTCTCTATCATT 60.202 37.037 0.00 0.00 0.00 2.57
4569 4683 6.259608 CGGCACTTTTCTTCATTCTCTATCAT 59.740 38.462 0.00 0.00 0.00 2.45
4570 4684 5.582269 CGGCACTTTTCTTCATTCTCTATCA 59.418 40.000 0.00 0.00 0.00 2.15
4571 4685 5.812642 TCGGCACTTTTCTTCATTCTCTATC 59.187 40.000 0.00 0.00 0.00 2.08
4572 4686 5.734720 TCGGCACTTTTCTTCATTCTCTAT 58.265 37.500 0.00 0.00 0.00 1.98
4573 4687 5.147330 TCGGCACTTTTCTTCATTCTCTA 57.853 39.130 0.00 0.00 0.00 2.43
4574 4688 4.008074 TCGGCACTTTTCTTCATTCTCT 57.992 40.909 0.00 0.00 0.00 3.10
4575 4689 4.749245 TTCGGCACTTTTCTTCATTCTC 57.251 40.909 0.00 0.00 0.00 2.87
4576 4690 5.514274 TTTTCGGCACTTTTCTTCATTCT 57.486 34.783 0.00 0.00 0.00 2.40
4622 4736 6.503524 TCATTTAAGTCAGGTTTTGCACTTC 58.496 36.000 0.00 0.00 32.83 3.01
4634 4748 2.906354 CCGGGTCCTCATTTAAGTCAG 58.094 52.381 0.00 0.00 0.00 3.51
4641 4755 2.677228 CAGGCCGGGTCCTCATTT 59.323 61.111 2.18 0.00 33.25 2.32
4653 4767 0.846693 AGAATACACCCATCCAGGCC 59.153 55.000 0.00 0.00 35.39 5.19
4714 4828 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
4715 4829 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
4716 4830 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
4717 4831 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4718 4832 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4719 4833 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4720 4834 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
4721 4835 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
4722 4836 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
4723 4837 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
4724 4838 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
4725 4839 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
4726 4840 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
4727 4841 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
4733 4847 8.748412 CCCTTTTATCCATTTTGATGACAAGTA 58.252 33.333 0.00 0.00 37.32 2.24
4734 4848 7.310609 CCCCTTTTATCCATTTTGATGACAAGT 60.311 37.037 0.00 0.00 37.32 3.16
4735 4849 7.043565 CCCCTTTTATCCATTTTGATGACAAG 58.956 38.462 0.00 0.00 37.32 3.16
4736 4850 6.728164 TCCCCTTTTATCCATTTTGATGACAA 59.272 34.615 0.00 0.00 0.00 3.18
4737 4851 6.259893 TCCCCTTTTATCCATTTTGATGACA 58.740 36.000 0.00 0.00 0.00 3.58
4738 4852 6.790232 TCCCCTTTTATCCATTTTGATGAC 57.210 37.500 0.00 0.00 0.00 3.06
4739 4853 6.902416 ACATCCCCTTTTATCCATTTTGATGA 59.098 34.615 0.00 0.00 32.39 2.92
4740 4854 7.128234 ACATCCCCTTTTATCCATTTTGATG 57.872 36.000 0.00 0.00 33.80 3.07
4741 4855 9.093458 GATACATCCCCTTTTATCCATTTTGAT 57.907 33.333 0.00 0.00 0.00 2.57
4742 4856 8.288812 AGATACATCCCCTTTTATCCATTTTGA 58.711 33.333 0.00 0.00 0.00 2.69
4743 4857 8.362639 CAGATACATCCCCTTTTATCCATTTTG 58.637 37.037 0.00 0.00 0.00 2.44
4744 4858 7.510343 CCAGATACATCCCCTTTTATCCATTTT 59.490 37.037 0.00 0.00 0.00 1.82
4745 4859 7.012607 CCAGATACATCCCCTTTTATCCATTT 58.987 38.462 0.00 0.00 0.00 2.32
4746 4860 6.335311 TCCAGATACATCCCCTTTTATCCATT 59.665 38.462 0.00 0.00 0.00 3.16
4747 4861 5.857283 TCCAGATACATCCCCTTTTATCCAT 59.143 40.000 0.00 0.00 0.00 3.41
4748 4862 5.231552 TCCAGATACATCCCCTTTTATCCA 58.768 41.667 0.00 0.00 0.00 3.41
4749 4863 5.843019 TCCAGATACATCCCCTTTTATCC 57.157 43.478 0.00 0.00 0.00 2.59
4750 4864 6.784031 ACATCCAGATACATCCCCTTTTATC 58.216 40.000 0.00 0.00 0.00 1.75
4751 4865 6.786843 ACATCCAGATACATCCCCTTTTAT 57.213 37.500 0.00 0.00 0.00 1.40
4752 4866 7.888514 ATACATCCAGATACATCCCCTTTTA 57.111 36.000 0.00 0.00 0.00 1.52
4753 4867 6.786843 ATACATCCAGATACATCCCCTTTT 57.213 37.500 0.00 0.00 0.00 2.27
4754 4868 6.786843 AATACATCCAGATACATCCCCTTT 57.213 37.500 0.00 0.00 0.00 3.11
4755 4869 6.786843 AAATACATCCAGATACATCCCCTT 57.213 37.500 0.00 0.00 0.00 3.95
4756 4870 6.786843 AAAATACATCCAGATACATCCCCT 57.213 37.500 0.00 0.00 0.00 4.79
4757 4871 7.690256 ACTAAAATACATCCAGATACATCCCC 58.310 38.462 0.00 0.00 0.00 4.81
4758 4872 9.220767 GAACTAAAATACATCCAGATACATCCC 57.779 37.037 0.00 0.00 0.00 3.85
4780 4894 9.268282 TGGATAAAAAGAGGTGTATCTAGAACT 57.732 33.333 0.00 0.00 0.00 3.01
4786 4900 9.753674 TCAAAATGGATAAAAAGAGGTGTATCT 57.246 29.630 0.00 0.00 0.00 1.98
4789 4903 9.527157 TCATCAAAATGGATAAAAAGAGGTGTA 57.473 29.630 0.00 0.00 33.42 2.90
4790 4904 8.306761 GTCATCAAAATGGATAAAAAGAGGTGT 58.693 33.333 0.00 0.00 33.42 4.16
4791 4905 8.306038 TGTCATCAAAATGGATAAAAAGAGGTG 58.694 33.333 0.00 0.00 33.42 4.00
4792 4906 8.421249 TGTCATCAAAATGGATAAAAAGAGGT 57.579 30.769 0.00 0.00 33.42 3.85
4793 4907 9.362539 CTTGTCATCAAAATGGATAAAAAGAGG 57.637 33.333 0.00 0.00 33.42 3.69
4794 4908 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
4802 4916 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
4803 4917 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
4804 4918 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
4805 4919 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
4806 4920 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
4807 4921 6.203145 TCGTCCGAAAATACTTGTCATCAAAA 59.797 34.615 0.00 0.00 32.87 2.44
4808 4922 5.697178 TCGTCCGAAAATACTTGTCATCAAA 59.303 36.000 0.00 0.00 32.87 2.69
4809 4923 5.231702 TCGTCCGAAAATACTTGTCATCAA 58.768 37.500 0.00 0.00 0.00 2.57
4810 4924 4.811908 TCGTCCGAAAATACTTGTCATCA 58.188 39.130 0.00 0.00 0.00 3.07
4811 4925 5.220416 CCTTCGTCCGAAAATACTTGTCATC 60.220 44.000 3.52 0.00 33.34 2.92
4812 4926 4.630069 CCTTCGTCCGAAAATACTTGTCAT 59.370 41.667 3.52 0.00 33.34 3.06
4813 4927 3.991773 CCTTCGTCCGAAAATACTTGTCA 59.008 43.478 3.52 0.00 33.34 3.58
4814 4928 3.370061 CCCTTCGTCCGAAAATACTTGTC 59.630 47.826 3.52 0.00 33.34 3.18
4815 4929 3.007182 TCCCTTCGTCCGAAAATACTTGT 59.993 43.478 3.52 0.00 33.34 3.16
4816 4930 3.592059 TCCCTTCGTCCGAAAATACTTG 58.408 45.455 3.52 0.00 33.34 3.16
4817 4931 3.260128 ACTCCCTTCGTCCGAAAATACTT 59.740 43.478 3.52 0.00 33.34 2.24
4818 4932 2.830321 ACTCCCTTCGTCCGAAAATACT 59.170 45.455 3.52 0.00 33.34 2.12
4819 4933 3.242549 ACTCCCTTCGTCCGAAAATAC 57.757 47.619 3.52 0.00 33.34 1.89
4820 4934 4.220382 TGTTACTCCCTTCGTCCGAAAATA 59.780 41.667 3.52 0.00 33.34 1.40
4821 4935 3.007182 TGTTACTCCCTTCGTCCGAAAAT 59.993 43.478 3.52 0.00 33.34 1.82
4822 4936 2.364970 TGTTACTCCCTTCGTCCGAAAA 59.635 45.455 3.52 0.00 33.34 2.29
4823 4937 1.962807 TGTTACTCCCTTCGTCCGAAA 59.037 47.619 3.52 0.00 33.34 3.46
4824 4938 1.542915 CTGTTACTCCCTTCGTCCGAA 59.457 52.381 1.81 1.81 0.00 4.30
4825 4939 1.171308 CTGTTACTCCCTTCGTCCGA 58.829 55.000 0.00 0.00 0.00 4.55
4826 4940 1.135460 GTCTGTTACTCCCTTCGTCCG 60.135 57.143 0.00 0.00 0.00 4.79
4827 4941 1.891150 TGTCTGTTACTCCCTTCGTCC 59.109 52.381 0.00 0.00 0.00 4.79
4828 4942 3.870633 ATGTCTGTTACTCCCTTCGTC 57.129 47.619 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.