Multiple sequence alignment - TraesCS2B01G364300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G364300 chr2B 100.000 1988 0 0 673 2660 518592402 518594389 0.000000e+00 3672.0
1 TraesCS2B01G364300 chr2B 100.000 358 0 0 1 358 518591730 518592087 0.000000e+00 662.0
2 TraesCS2B01G364300 chr2B 84.426 610 90 3 1047 1655 518739830 518740435 1.760000e-166 595.0
3 TraesCS2B01G364300 chr2B 96.281 242 8 1 673 914 584884319 584884079 1.920000e-106 396.0
4 TraesCS2B01G364300 chr2B 81.053 95 17 1 2081 2175 19446 19353 1.020000e-09 75.0
5 TraesCS2B01G364300 chr2A 94.630 1229 48 8 954 2175 584143354 584144571 0.000000e+00 1888.0
6 TraesCS2B01G364300 chr2A 84.514 607 87 6 1047 1651 584510844 584511445 6.340000e-166 593.0
7 TraesCS2B01G364300 chr2A 93.235 340 20 1 2323 2659 584144641 584144980 5.110000e-137 497.0
8 TraesCS2B01G364300 chr2A 94.444 72 4 0 2190 2261 584144556 584144627 7.780000e-21 111.0
9 TraesCS2B01G364300 chr2D 95.181 747 28 3 954 1696 440633896 440634638 0.000000e+00 1173.0
10 TraesCS2B01G364300 chr2D 84.124 611 90 5 1047 1655 185368009 185368614 3.820000e-163 584.0
11 TraesCS2B01G364300 chr2D 84.124 611 90 5 1047 1655 440767107 440767712 3.820000e-163 584.0
12 TraesCS2B01G364300 chr6A 97.486 358 9 0 1 358 93421473 93421830 1.750000e-171 612.0
13 TraesCS2B01G364300 chr6A 96.927 358 11 0 1 358 46055704 46055347 3.790000e-168 601.0
14 TraesCS2B01G364300 chr6A 97.934 242 3 2 673 914 93421883 93422122 4.100000e-113 418.0
15 TraesCS2B01G364300 chr6A 96.296 243 8 1 673 914 46055285 46055043 5.340000e-107 398.0
16 TraesCS2B01G364300 chr4A 96.927 358 11 0 1 358 108068766 108069123 3.790000e-168 601.0
17 TraesCS2B01G364300 chr4A 96.296 243 8 1 673 914 108069183 108069425 5.340000e-107 398.0
18 TraesCS2B01G364300 chr7A 96.648 358 12 0 1 358 524712523 524712880 1.760000e-166 595.0
19 TraesCS2B01G364300 chr7A 96.667 240 8 0 675 914 284738079 284738318 1.480000e-107 399.0
20 TraesCS2B01G364300 chr7A 96.296 243 6 2 673 914 524712928 524713168 1.920000e-106 396.0
21 TraesCS2B01G364300 chr7A 81.250 96 15 3 2081 2174 736085457 736085363 1.020000e-09 75.0
22 TraesCS2B01G364300 chr6D 84.526 601 88 3 1056 1655 100570358 100569762 8.200000e-165 590.0
23 TraesCS2B01G364300 chr6D 83.797 611 92 5 1047 1655 216836537 216837142 8.260000e-160 573.0
24 TraesCS2B01G364300 chr3A 96.369 358 13 0 1 358 140964784 140965141 8.200000e-165 590.0
25 TraesCS2B01G364300 chr3A 97.107 242 7 0 673 914 140965205 140965446 2.460000e-110 409.0
26 TraesCS2B01G364300 chr3A 85.263 95 13 1 2081 2175 708847185 708847278 2.180000e-16 97.1
27 TraesCS2B01G364300 chr6B 96.089 358 14 0 1 358 77667485 77667842 3.820000e-163 584.0
28 TraesCS2B01G364300 chr6B 83.333 60 10 0 2116 2175 446850441 446850500 3.700000e-04 56.5
29 TraesCS2B01G364300 chr4B 96.089 358 13 1 1 358 452705871 452706227 1.370000e-162 582.0
30 TraesCS2B01G364300 chr4B 95.518 357 16 0 1 357 614019260 614018904 2.970000e-159 571.0
31 TraesCS2B01G364300 chr3D 84.193 601 90 3 1056 1655 241044587 241043991 1.780000e-161 579.0
32 TraesCS2B01G364300 chr7B 95.251 358 17 0 1 358 467788369 467788012 3.840000e-158 568.0
33 TraesCS2B01G364300 chr7B 96.694 242 7 1 673 914 467787683 467787443 4.120000e-108 401.0
34 TraesCS2B01G364300 chr1B 98.760 242 2 1 674 914 427542440 427542681 1.890000e-116 429.0
35 TraesCS2B01G364300 chr5D 82.292 96 16 1 2080 2175 217292536 217292442 6.100000e-12 82.4
36 TraesCS2B01G364300 chr5D 81.250 96 17 1 2081 2176 497860772 497860678 2.840000e-10 76.8
37 TraesCS2B01G364300 chr5B 81.053 95 17 1 2081 2175 617112172 617112079 1.020000e-09 75.0
38 TraesCS2B01G364300 chr1A 94.595 37 2 0 2139 2175 15342377 15342341 1.030000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G364300 chr2B 518591730 518594389 2659 False 2167.0 3672 100.0000 1 2660 2 chr2B.!!$F2 2659
1 TraesCS2B01G364300 chr2B 518739830 518740435 605 False 595.0 595 84.4260 1047 1655 1 chr2B.!!$F1 608
2 TraesCS2B01G364300 chr2A 584143354 584144980 1626 False 832.0 1888 94.1030 954 2659 3 chr2A.!!$F2 1705
3 TraesCS2B01G364300 chr2A 584510844 584511445 601 False 593.0 593 84.5140 1047 1651 1 chr2A.!!$F1 604
4 TraesCS2B01G364300 chr2D 440633896 440634638 742 False 1173.0 1173 95.1810 954 1696 1 chr2D.!!$F2 742
5 TraesCS2B01G364300 chr2D 185368009 185368614 605 False 584.0 584 84.1240 1047 1655 1 chr2D.!!$F1 608
6 TraesCS2B01G364300 chr2D 440767107 440767712 605 False 584.0 584 84.1240 1047 1655 1 chr2D.!!$F3 608
7 TraesCS2B01G364300 chr6A 93421473 93422122 649 False 515.0 612 97.7100 1 914 2 chr6A.!!$F1 913
8 TraesCS2B01G364300 chr6A 46055043 46055704 661 True 499.5 601 96.6115 1 914 2 chr6A.!!$R1 913
9 TraesCS2B01G364300 chr4A 108068766 108069425 659 False 499.5 601 96.6115 1 914 2 chr4A.!!$F1 913
10 TraesCS2B01G364300 chr7A 524712523 524713168 645 False 495.5 595 96.4720 1 914 2 chr7A.!!$F2 913
11 TraesCS2B01G364300 chr6D 100569762 100570358 596 True 590.0 590 84.5260 1056 1655 1 chr6D.!!$R1 599
12 TraesCS2B01G364300 chr6D 216836537 216837142 605 False 573.0 573 83.7970 1047 1655 1 chr6D.!!$F1 608
13 TraesCS2B01G364300 chr3A 140964784 140965446 662 False 499.5 590 96.7380 1 914 2 chr3A.!!$F2 913
14 TraesCS2B01G364300 chr3D 241043991 241044587 596 True 579.0 579 84.1930 1056 1655 1 chr3D.!!$R1 599
15 TraesCS2B01G364300 chr7B 467787443 467788369 926 True 484.5 568 95.9725 1 914 2 chr7B.!!$R1 913

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
918 934 0.047176 AGAGGGAGGAGAGAGAGGGA 59.953 60.0 0.0 0.0 0.0 4.2 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2310 2335 0.033366 ATTTTTGTGGCGGCAACTCC 59.967 50.0 15.5 0.83 43.76 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
214 215 1.525923 CTCCCCATCAGGAGCACAG 59.474 63.158 0.00 0.00 46.76 3.66
235 236 0.471617 CCAAGATACCAGGAGCAGGG 59.528 60.000 0.00 0.00 0.00 4.45
914 930 1.518367 GGAGAGAGGGAGGAGAGAGA 58.482 60.000 0.00 0.00 0.00 3.10
915 931 1.421646 GGAGAGAGGGAGGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
916 932 1.421646 GAGAGAGGGAGGAGAGAGAGG 59.578 61.905 0.00 0.00 0.00 3.69
917 933 0.478507 GAGAGGGAGGAGAGAGAGGG 59.521 65.000 0.00 0.00 0.00 4.30
918 934 0.047176 AGAGGGAGGAGAGAGAGGGA 59.953 60.000 0.00 0.00 0.00 4.20
919 935 0.478507 GAGGGAGGAGAGAGAGGGAG 59.521 65.000 0.00 0.00 0.00 4.30
920 936 0.998945 AGGGAGGAGAGAGAGGGAGG 60.999 65.000 0.00 0.00 0.00 4.30
921 937 0.996762 GGGAGGAGAGAGAGGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
922 938 0.478507 GGAGGAGAGAGAGGGAGGAG 59.521 65.000 0.00 0.00 0.00 3.69
923 939 1.518367 GAGGAGAGAGAGGGAGGAGA 58.482 60.000 0.00 0.00 0.00 3.71
924 940 1.421646 GAGGAGAGAGAGGGAGGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
925 941 1.010793 AGGAGAGAGAGGGAGGAGAGA 59.989 57.143 0.00 0.00 0.00 3.10
926 942 1.421646 GGAGAGAGAGGGAGGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
927 943 1.421646 GAGAGAGAGGGAGGAGAGAGG 59.578 61.905 0.00 0.00 0.00 3.69
928 944 1.010793 AGAGAGAGGGAGGAGAGAGGA 59.989 57.143 0.00 0.00 0.00 3.71
929 945 1.421646 GAGAGAGGGAGGAGAGAGGAG 59.578 61.905 0.00 0.00 0.00 3.69
930 946 0.178990 GAGAGGGAGGAGAGAGGAGC 60.179 65.000 0.00 0.00 0.00 4.70
931 947 1.152546 GAGGGAGGAGAGAGGAGCC 60.153 68.421 0.00 0.00 0.00 4.70
932 948 1.938596 AGGGAGGAGAGAGGAGCCA 60.939 63.158 0.00 0.00 0.00 4.75
933 949 1.235696 GGGAGGAGAGAGGAGCCAT 59.764 63.158 0.00 0.00 0.00 4.40
934 950 0.831711 GGGAGGAGAGAGGAGCCATC 60.832 65.000 0.00 0.00 0.00 3.51
935 951 0.188342 GGAGGAGAGAGGAGCCATCT 59.812 60.000 0.00 0.00 0.00 2.90
936 952 1.620822 GAGGAGAGAGGAGCCATCTC 58.379 60.000 11.32 11.32 42.95 2.75
944 960 4.874528 GAGCCATCTCCCTCTTGC 57.125 61.111 0.00 0.00 33.19 4.01
945 961 1.910722 GAGCCATCTCCCTCTTGCA 59.089 57.895 0.00 0.00 33.19 4.08
946 962 0.473326 GAGCCATCTCCCTCTTGCAT 59.527 55.000 0.00 0.00 33.19 3.96
947 963 0.183014 AGCCATCTCCCTCTTGCATG 59.817 55.000 0.00 0.00 0.00 4.06
948 964 0.822532 GCCATCTCCCTCTTGCATGG 60.823 60.000 0.00 0.00 37.63 3.66
949 965 0.178998 CCATCTCCCTCTTGCATGGG 60.179 60.000 12.25 12.25 44.66 4.00
950 966 0.822532 CATCTCCCTCTTGCATGGGC 60.823 60.000 13.31 0.00 43.04 5.36
951 967 0.992431 ATCTCCCTCTTGCATGGGCT 60.992 55.000 13.31 1.13 43.04 5.19
952 968 1.210204 TCTCCCTCTTGCATGGGCTT 61.210 55.000 13.31 0.00 43.04 4.35
960 976 0.960364 TTGCATGGGCTTCTTCGTCC 60.960 55.000 0.00 0.00 41.91 4.79
961 977 1.377202 GCATGGGCTTCTTCGTCCA 60.377 57.895 0.00 0.00 36.96 4.02
972 988 2.865079 TCTTCGTCCACACTTCTCTCT 58.135 47.619 0.00 0.00 0.00 3.10
1020 1040 1.734655 TGTCTCCCTTGCTTCTCCTT 58.265 50.000 0.00 0.00 0.00 3.36
1171 1191 2.030562 CCTTCGGCAACACCTCGT 59.969 61.111 0.00 0.00 35.61 4.18
1320 1340 1.202582 ACCAACATTCTCGACCTCTCG 59.797 52.381 0.00 0.00 41.65 4.04
1373 1393 2.759973 CTGCGACTGGCTCCCCTA 60.760 66.667 0.00 0.00 44.05 3.53
1515 1535 2.361230 TCTCTCTCGCGGCTGGAA 60.361 61.111 6.13 0.00 0.00 3.53
1642 1663 3.681835 GACGCCCTGTGTCCTCGT 61.682 66.667 0.00 0.00 37.12 4.18
1728 1749 5.182487 TGTACAATCACCGATAAATGTGCT 58.818 37.500 0.00 0.00 32.51 4.40
1740 1761 5.234329 CGATAAATGTGCTAAGTCGTTGGAT 59.766 40.000 0.00 0.00 0.00 3.41
1741 1762 4.946784 AAATGTGCTAAGTCGTTGGATC 57.053 40.909 0.00 0.00 0.00 3.36
1742 1763 3.610040 ATGTGCTAAGTCGTTGGATCA 57.390 42.857 0.00 0.00 0.00 2.92
1743 1764 2.959516 TGTGCTAAGTCGTTGGATCAG 58.040 47.619 0.00 0.00 0.00 2.90
1744 1765 2.560981 TGTGCTAAGTCGTTGGATCAGA 59.439 45.455 0.00 0.00 0.00 3.27
1745 1766 2.924290 GTGCTAAGTCGTTGGATCAGAC 59.076 50.000 0.00 0.00 35.30 3.51
1772 1793 4.365899 TGTAATACATCACGCGAGAAGT 57.634 40.909 15.93 17.07 0.00 3.01
1773 1794 5.488645 TGTAATACATCACGCGAGAAGTA 57.511 39.130 20.57 20.57 0.00 2.24
1774 1795 5.882553 TGTAATACATCACGCGAGAAGTAA 58.117 37.500 21.76 7.32 0.00 2.24
1776 1797 2.279582 ACATCACGCGAGAAGTAAGG 57.720 50.000 15.93 0.13 0.00 2.69
1778 1799 1.920574 CATCACGCGAGAAGTAAGGTG 59.079 52.381 15.93 0.00 0.00 4.00
1779 1800 0.242825 TCACGCGAGAAGTAAGGTGG 59.757 55.000 15.93 0.00 0.00 4.61
1780 1801 0.038526 CACGCGAGAAGTAAGGTGGT 60.039 55.000 15.93 0.00 0.00 4.16
1781 1802 0.677842 ACGCGAGAAGTAAGGTGGTT 59.322 50.000 15.93 0.00 0.00 3.67
1782 1803 1.336609 ACGCGAGAAGTAAGGTGGTTC 60.337 52.381 15.93 0.00 0.00 3.62
1807 1828 1.202582 GACGAGCAACTGAGGAAGCTA 59.797 52.381 0.00 0.00 37.48 3.32
2047 2069 7.334671 CCAAGTCTTACCTTACTTTTCTCATCC 59.665 40.741 0.00 0.00 33.72 3.51
2066 2088 4.166309 TCCCCTCATCCCATTATCTGAT 57.834 45.455 0.00 0.00 0.00 2.90
2069 2091 6.097753 TCCCCTCATCCCATTATCTGATAAA 58.902 40.000 13.62 0.00 0.00 1.40
2079 2101 9.473007 TCCCATTATCTGATAAATGTGTTTTCA 57.527 29.630 13.62 0.00 0.00 2.69
2096 2120 9.160496 TGTGTTTTCAACTCAAAATAAAGCATT 57.840 25.926 0.00 0.00 32.53 3.56
2131 2155 4.156455 AGACCATGATCATACACCCAAC 57.844 45.455 8.15 0.00 0.00 3.77
2132 2156 3.523157 AGACCATGATCATACACCCAACA 59.477 43.478 8.15 0.00 0.00 3.33
2133 2157 4.166725 AGACCATGATCATACACCCAACAT 59.833 41.667 8.15 0.00 0.00 2.71
2134 2158 5.369404 AGACCATGATCATACACCCAACATA 59.631 40.000 8.15 0.00 0.00 2.29
2135 2159 6.044754 AGACCATGATCATACACCCAACATAT 59.955 38.462 8.15 0.00 0.00 1.78
2175 2200 3.446873 ACAACCAACATCAACACACACAT 59.553 39.130 0.00 0.00 0.00 3.21
2176 2201 4.081752 ACAACCAACATCAACACACACATT 60.082 37.500 0.00 0.00 0.00 2.71
2177 2202 4.305989 ACCAACATCAACACACACATTC 57.694 40.909 0.00 0.00 0.00 2.67
2178 2203 3.953612 ACCAACATCAACACACACATTCT 59.046 39.130 0.00 0.00 0.00 2.40
2179 2204 4.036734 ACCAACATCAACACACACATTCTC 59.963 41.667 0.00 0.00 0.00 2.87
2181 2206 2.224079 ACATCAACACACACATTCTCGC 59.776 45.455 0.00 0.00 0.00 5.03
2182 2207 1.946745 TCAACACACACATTCTCGCA 58.053 45.000 0.00 0.00 0.00 5.10
2183 2208 2.284190 TCAACACACACATTCTCGCAA 58.716 42.857 0.00 0.00 0.00 4.85
2184 2209 2.680339 TCAACACACACATTCTCGCAAA 59.320 40.909 0.00 0.00 0.00 3.68
2185 2210 3.127721 TCAACACACACATTCTCGCAAAA 59.872 39.130 0.00 0.00 0.00 2.44
2186 2211 3.773860 ACACACACATTCTCGCAAAAA 57.226 38.095 0.00 0.00 0.00 1.94
2211 2236 8.994429 AAAAACATCAACACACACATAAAAGA 57.006 26.923 0.00 0.00 0.00 2.52
2212 2237 7.985634 AAACATCAACACACACATAAAAGAC 57.014 32.000 0.00 0.00 0.00 3.01
2213 2238 6.942532 ACATCAACACACACATAAAAGACT 57.057 33.333 0.00 0.00 0.00 3.24
2214 2239 6.728200 ACATCAACACACACATAAAAGACTG 58.272 36.000 0.00 0.00 0.00 3.51
2215 2240 6.318648 ACATCAACACACACATAAAAGACTGT 59.681 34.615 0.00 0.00 0.00 3.55
2255 2280 6.554982 ACCATAGAAGATCAACACTATGCCTA 59.445 38.462 16.02 0.00 40.10 3.93
2261 2286 1.009060 TCAACACTATGCCTAGGGGGA 59.991 52.381 11.72 0.00 37.23 4.81
2264 2289 1.223077 ACACTATGCCTAGGGGGATGA 59.777 52.381 11.72 0.00 43.62 2.92
2265 2290 2.338809 CACTATGCCTAGGGGGATGAA 58.661 52.381 11.72 0.00 43.62 2.57
2266 2291 2.711009 CACTATGCCTAGGGGGATGAAA 59.289 50.000 11.72 0.00 43.62 2.69
2267 2292 3.138283 CACTATGCCTAGGGGGATGAAAA 59.862 47.826 11.72 0.00 43.62 2.29
2268 2293 3.791545 ACTATGCCTAGGGGGATGAAAAA 59.208 43.478 11.72 0.00 43.62 1.94
2269 2294 2.525105 TGCCTAGGGGGATGAAAAAC 57.475 50.000 11.72 0.00 37.23 2.43
2270 2295 2.000048 TGCCTAGGGGGATGAAAAACT 59.000 47.619 11.72 0.00 37.23 2.66
2271 2296 3.194620 TGCCTAGGGGGATGAAAAACTA 58.805 45.455 11.72 0.00 37.23 2.24
2272 2297 3.594232 TGCCTAGGGGGATGAAAAACTAA 59.406 43.478 11.72 0.00 37.23 2.24
2273 2298 4.044825 TGCCTAGGGGGATGAAAAACTAAA 59.955 41.667 11.72 0.00 37.23 1.85
2274 2299 5.020795 GCCTAGGGGGATGAAAAACTAAAA 58.979 41.667 11.72 0.00 37.23 1.52
2275 2300 5.127194 GCCTAGGGGGATGAAAAACTAAAAG 59.873 44.000 11.72 0.00 37.23 2.27
2276 2301 6.490492 CCTAGGGGGATGAAAAACTAAAAGA 58.510 40.000 0.00 0.00 37.23 2.52
2277 2302 6.951778 CCTAGGGGGATGAAAAACTAAAAGAA 59.048 38.462 0.00 0.00 37.23 2.52
2278 2303 7.453439 CCTAGGGGGATGAAAAACTAAAAGAAA 59.547 37.037 0.00 0.00 37.23 2.52
2279 2304 7.684317 AGGGGGATGAAAAACTAAAAGAAAA 57.316 32.000 0.00 0.00 0.00 2.29
2280 2305 8.096621 AGGGGGATGAAAAACTAAAAGAAAAA 57.903 30.769 0.00 0.00 0.00 1.94
2281 2306 8.210946 AGGGGGATGAAAAACTAAAAGAAAAAG 58.789 33.333 0.00 0.00 0.00 2.27
2282 2307 7.444183 GGGGGATGAAAAACTAAAAGAAAAAGG 59.556 37.037 0.00 0.00 0.00 3.11
2283 2308 7.444183 GGGGATGAAAAACTAAAAGAAAAAGGG 59.556 37.037 0.00 0.00 0.00 3.95
2284 2309 8.208224 GGGATGAAAAACTAAAAGAAAAAGGGA 58.792 33.333 0.00 0.00 0.00 4.20
2285 2310 9.607988 GGATGAAAAACTAAAAGAAAAAGGGAA 57.392 29.630 0.00 0.00 0.00 3.97
2291 2316 8.718102 AAACTAAAAGAAAAAGGGAAAAGAGC 57.282 30.769 0.00 0.00 0.00 4.09
2292 2317 7.418337 ACTAAAAGAAAAAGGGAAAAGAGCA 57.582 32.000 0.00 0.00 0.00 4.26
2293 2318 7.847096 ACTAAAAGAAAAAGGGAAAAGAGCAA 58.153 30.769 0.00 0.00 0.00 3.91
2294 2319 6.985188 AAAAGAAAAAGGGAAAAGAGCAAC 57.015 33.333 0.00 0.00 0.00 4.17
2295 2320 5.675684 AAGAAAAAGGGAAAAGAGCAACA 57.324 34.783 0.00 0.00 0.00 3.33
2296 2321 5.876651 AGAAAAAGGGAAAAGAGCAACAT 57.123 34.783 0.00 0.00 0.00 2.71
2297 2322 6.239217 AGAAAAAGGGAAAAGAGCAACATT 57.761 33.333 0.00 0.00 0.00 2.71
2298 2323 6.051074 AGAAAAAGGGAAAAGAGCAACATTG 58.949 36.000 0.00 0.00 0.00 2.82
2299 2324 5.612725 AAAAGGGAAAAGAGCAACATTGA 57.387 34.783 0.00 0.00 0.00 2.57
2300 2325 5.813513 AAAGGGAAAAGAGCAACATTGAT 57.186 34.783 0.00 0.00 0.00 2.57
2301 2326 5.397142 AAGGGAAAAGAGCAACATTGATC 57.603 39.130 1.59 1.59 43.53 2.92
2302 2327 3.766051 AGGGAAAAGAGCAACATTGATCC 59.234 43.478 6.26 0.00 44.22 3.36
2303 2328 3.766051 GGGAAAAGAGCAACATTGATCCT 59.234 43.478 6.26 0.00 44.22 3.24
2304 2329 4.142293 GGGAAAAGAGCAACATTGATCCTC 60.142 45.833 6.26 1.90 44.22 3.71
2305 2330 4.437930 GGAAAAGAGCAACATTGATCCTCG 60.438 45.833 6.26 0.00 44.22 4.63
2306 2331 3.340814 AAGAGCAACATTGATCCTCGT 57.659 42.857 6.26 0.00 44.22 4.18
2307 2332 2.898705 AGAGCAACATTGATCCTCGTC 58.101 47.619 6.26 0.00 44.22 4.20
2308 2333 1.590238 GAGCAACATTGATCCTCGTCG 59.410 52.381 0.00 0.00 37.62 5.12
2309 2334 1.204704 AGCAACATTGATCCTCGTCGA 59.795 47.619 0.00 0.00 0.00 4.20
2310 2335 1.590238 GCAACATTGATCCTCGTCGAG 59.410 52.381 15.53 15.53 0.00 4.04
2319 2344 2.202492 CTCGTCGAGGAGTTGCCG 60.202 66.667 23.67 4.29 43.43 5.69
2320 2345 4.415332 TCGTCGAGGAGTTGCCGC 62.415 66.667 3.17 0.00 43.43 6.53
2401 2426 7.832769 ACCATACACACACCAATAAAATAACC 58.167 34.615 0.00 0.00 0.00 2.85
2403 2428 8.527810 CCATACACACACCAATAAAATAACCTT 58.472 33.333 0.00 0.00 0.00 3.50
2404 2429 9.352784 CATACACACACCAATAAAATAACCTTG 57.647 33.333 0.00 0.00 0.00 3.61
2446 2471 3.627395 AACTTATCACGGAGCCATTGA 57.373 42.857 0.00 0.00 0.00 2.57
2461 2486 3.739209 GCCATTGATCACATGACGAGAGA 60.739 47.826 15.30 0.00 0.00 3.10
2475 2500 1.566018 GAGAGAAAACACCACCGCCG 61.566 60.000 0.00 0.00 0.00 6.46
2485 2510 2.046314 CACCGCCGAAATCCCACT 60.046 61.111 0.00 0.00 0.00 4.00
2493 2518 2.095212 GCCGAAATCCCACTTTGAAGAC 60.095 50.000 0.00 0.00 0.00 3.01
2503 2528 3.187227 CCACTTTGAAGACAATCCGACAG 59.813 47.826 0.00 0.00 35.85 3.51
2519 2544 0.396435 ACAGTCACCCGCTTTCATCA 59.604 50.000 0.00 0.00 0.00 3.07
2521 2546 0.321653 AGTCACCCGCTTTCATCACC 60.322 55.000 0.00 0.00 0.00 4.02
2537 2562 6.065976 TCATCACCAATGTCTCTAAATGGT 57.934 37.500 0.00 0.00 44.95 3.55
2577 2605 2.060326 ATACACCACGAGTTGTCACG 57.940 50.000 0.00 0.00 0.00 4.35
2582 2610 1.663702 CACGAGTTGTCACGGTCCC 60.664 63.158 0.00 0.00 32.37 4.46
2627 2655 3.190535 GTGAATTACCACGCACCATCTTT 59.809 43.478 0.00 0.00 0.00 2.52
2647 2675 5.465390 TCTTTGTAACTTGATGTCTCAACGG 59.535 40.000 0.00 0.00 36.46 4.44
2659 2687 0.168128 CTCAACGGAAAATCGGCACC 59.832 55.000 0.00 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 142 1.825474 CTCCTTCTCCGTCTTTGGCTA 59.175 52.381 0.00 0.00 0.00 3.93
214 215 0.179034 CTGCTCCTGGTATCTTGGGC 60.179 60.000 0.00 0.00 0.00 5.36
339 340 3.806591 CCTCGCCTTCGTAAGTTCA 57.193 52.632 0.00 0.00 36.96 3.18
681 696 0.976641 TGTGGAGGATTCGCAGTCTT 59.023 50.000 0.00 0.00 0.00 3.01
914 930 1.303423 ATGGCTCCTCTCTCCTCCCT 61.303 60.000 0.00 0.00 0.00 4.20
915 931 0.831711 GATGGCTCCTCTCTCCTCCC 60.832 65.000 0.00 0.00 0.00 4.30
916 932 0.188342 AGATGGCTCCTCTCTCCTCC 59.812 60.000 0.00 0.00 0.00 4.30
917 933 1.620822 GAGATGGCTCCTCTCTCCTC 58.379 60.000 7.44 0.00 36.91 3.71
918 934 3.848353 GAGATGGCTCCTCTCTCCT 57.152 57.895 7.44 0.00 36.91 3.69
927 943 0.473326 ATGCAAGAGGGAGATGGCTC 59.527 55.000 0.00 0.00 40.54 4.70
928 944 0.183014 CATGCAAGAGGGAGATGGCT 59.817 55.000 0.00 0.00 0.00 4.75
929 945 0.822532 CCATGCAAGAGGGAGATGGC 60.823 60.000 0.00 0.00 0.00 4.40
930 946 3.416253 CCATGCAAGAGGGAGATGG 57.584 57.895 0.00 0.00 0.00 3.51
937 953 1.101331 GAAGAAGCCCATGCAAGAGG 58.899 55.000 0.00 0.00 41.13 3.69
938 954 0.731417 CGAAGAAGCCCATGCAAGAG 59.269 55.000 0.00 0.00 41.13 2.85
939 955 0.036732 ACGAAGAAGCCCATGCAAGA 59.963 50.000 0.00 0.00 41.13 3.02
940 956 0.449388 GACGAAGAAGCCCATGCAAG 59.551 55.000 0.00 0.00 41.13 4.01
941 957 0.960364 GGACGAAGAAGCCCATGCAA 60.960 55.000 0.00 0.00 41.13 4.08
942 958 1.377202 GGACGAAGAAGCCCATGCA 60.377 57.895 0.00 0.00 41.13 3.96
943 959 1.377202 TGGACGAAGAAGCCCATGC 60.377 57.895 0.00 0.00 37.95 4.06
944 960 0.321564 TGTGGACGAAGAAGCCCATG 60.322 55.000 0.00 0.00 0.00 3.66
945 961 0.321653 GTGTGGACGAAGAAGCCCAT 60.322 55.000 0.00 0.00 0.00 4.00
946 962 1.070786 GTGTGGACGAAGAAGCCCA 59.929 57.895 0.00 0.00 0.00 5.36
947 963 0.250338 AAGTGTGGACGAAGAAGCCC 60.250 55.000 0.00 0.00 0.00 5.19
948 964 1.149148 GAAGTGTGGACGAAGAAGCC 58.851 55.000 0.00 0.00 0.00 4.35
949 965 2.062519 GAGAAGTGTGGACGAAGAAGC 58.937 52.381 0.00 0.00 0.00 3.86
950 966 3.254657 AGAGAGAAGTGTGGACGAAGAAG 59.745 47.826 0.00 0.00 0.00 2.85
951 967 3.223435 AGAGAGAAGTGTGGACGAAGAA 58.777 45.455 0.00 0.00 0.00 2.52
952 968 2.814919 GAGAGAGAAGTGTGGACGAAGA 59.185 50.000 0.00 0.00 0.00 2.87
960 976 2.148982 CGCGCGAGAGAGAAGTGTG 61.149 63.158 28.94 0.00 0.00 3.82
961 977 2.177038 CGCGCGAGAGAGAAGTGT 59.823 61.111 28.94 0.00 0.00 3.55
1036 1056 2.604991 GGCTAGCGCTAGGGGGAT 60.605 66.667 37.97 6.67 36.09 3.85
1073 1093 0.465097 TACGTCGTCCTCCTGGATCC 60.465 60.000 4.20 4.20 45.29 3.36
1076 1096 1.742880 CGTACGTCGTCCTCCTGGA 60.743 63.158 7.22 0.00 40.69 3.86
1320 1340 2.881352 CCCTCGAGCGCGTTCTTC 60.881 66.667 20.77 6.68 38.98 2.87
1515 1535 3.362797 TCGAGCGTCTTGAGCCGT 61.363 61.111 0.00 0.00 34.64 5.68
1525 1545 0.321741 TTCTCAGAGAGGTCGAGCGT 60.322 55.000 9.28 0.00 0.00 5.07
1642 1663 2.027024 CTAATCGCGGCCGCAGTA 59.973 61.111 45.26 32.07 42.06 2.74
1698 1719 9.597999 CATTTATCGGTGATTGTACAACATATG 57.402 33.333 11.22 0.00 0.00 1.78
1728 1749 3.698289 AGGAGTCTGATCCAACGACTTA 58.302 45.455 0.00 0.00 42.26 2.24
1740 1761 6.294010 GCGTGATGTATTACATAGGAGTCTGA 60.294 42.308 9.27 0.00 39.27 3.27
1741 1762 5.859114 GCGTGATGTATTACATAGGAGTCTG 59.141 44.000 9.27 0.00 39.27 3.51
1742 1763 5.334957 CGCGTGATGTATTACATAGGAGTCT 60.335 44.000 9.27 0.00 39.27 3.24
1743 1764 4.852104 CGCGTGATGTATTACATAGGAGTC 59.148 45.833 9.27 0.00 39.27 3.36
1744 1765 4.517832 TCGCGTGATGTATTACATAGGAGT 59.482 41.667 5.77 0.00 39.27 3.85
1745 1766 5.043189 TCGCGTGATGTATTACATAGGAG 57.957 43.478 5.77 4.49 39.27 3.69
1772 1793 0.251297 TCGTCCCTCGAACCACCTTA 60.251 55.000 0.00 0.00 45.98 2.69
1773 1794 1.532316 TCGTCCCTCGAACCACCTT 60.532 57.895 0.00 0.00 45.98 3.50
1774 1795 2.116772 TCGTCCCTCGAACCACCT 59.883 61.111 0.00 0.00 45.98 4.00
1781 1802 1.587043 CTCAGTTGCTCGTCCCTCGA 61.587 60.000 0.00 0.00 46.83 4.04
1782 1803 1.153939 CTCAGTTGCTCGTCCCTCG 60.154 63.158 0.00 0.00 41.41 4.63
1826 1848 8.103305 TGTTTTAGGATATCAGAGTGAAGCTTT 58.897 33.333 0.00 0.00 0.00 3.51
2006 2028 6.937436 AAGACTTGGAACTCGTGTATTTTT 57.063 33.333 0.00 0.00 0.00 1.94
2024 2046 6.070136 GGGGATGAGAAAAGTAAGGTAAGACT 60.070 42.308 0.00 0.00 0.00 3.24
2047 2069 7.338703 CACATTTATCAGATAATGGGATGAGGG 59.661 40.741 15.26 5.24 0.00 4.30
2092 2116 9.113838 TCATGGTCTTTTCTATTCTCTTAATGC 57.886 33.333 0.00 0.00 0.00 3.56
2106 2130 5.192927 TGGGTGTATGATCATGGTCTTTTC 58.807 41.667 18.72 0.00 0.00 2.29
2111 2135 3.884895 TGTTGGGTGTATGATCATGGTC 58.115 45.455 18.72 0.00 0.00 4.02
2132 2156 9.219603 GGTTGTGTGCATCATAACTATACATAT 57.780 33.333 19.83 0.00 44.08 1.78
2133 2157 8.207545 TGGTTGTGTGCATCATAACTATACATA 58.792 33.333 19.83 0.00 44.08 2.29
2134 2158 7.053498 TGGTTGTGTGCATCATAACTATACAT 58.947 34.615 19.83 0.00 44.08 2.29
2135 2159 6.410540 TGGTTGTGTGCATCATAACTATACA 58.589 36.000 19.83 11.68 44.08 2.29
2186 2211 8.868916 GTCTTTTATGTGTGTGTTGATGTTTTT 58.131 29.630 0.00 0.00 0.00 1.94
2187 2212 8.250332 AGTCTTTTATGTGTGTGTTGATGTTTT 58.750 29.630 0.00 0.00 0.00 2.43
2188 2213 7.701924 CAGTCTTTTATGTGTGTGTTGATGTTT 59.298 33.333 0.00 0.00 0.00 2.83
2189 2214 7.148086 ACAGTCTTTTATGTGTGTGTTGATGTT 60.148 33.333 0.00 0.00 0.00 2.71
2190 2215 6.318648 ACAGTCTTTTATGTGTGTGTTGATGT 59.681 34.615 0.00 0.00 0.00 3.06
2191 2216 6.728200 ACAGTCTTTTATGTGTGTGTTGATG 58.272 36.000 0.00 0.00 0.00 3.07
2192 2217 6.292865 CGACAGTCTTTTATGTGTGTGTTGAT 60.293 38.462 0.00 0.00 0.00 2.57
2193 2218 5.006261 CGACAGTCTTTTATGTGTGTGTTGA 59.994 40.000 0.00 0.00 0.00 3.18
2194 2219 5.006261 TCGACAGTCTTTTATGTGTGTGTTG 59.994 40.000 0.00 0.00 0.00 3.33
2195 2220 5.006358 GTCGACAGTCTTTTATGTGTGTGTT 59.994 40.000 11.55 0.00 0.00 3.32
2196 2221 4.506654 GTCGACAGTCTTTTATGTGTGTGT 59.493 41.667 11.55 0.00 0.00 3.72
2197 2222 4.506288 TGTCGACAGTCTTTTATGTGTGTG 59.494 41.667 15.76 0.00 0.00 3.82
2198 2223 4.689071 TGTCGACAGTCTTTTATGTGTGT 58.311 39.130 15.76 0.00 0.00 3.72
2199 2224 5.651172 TTGTCGACAGTCTTTTATGTGTG 57.349 39.130 19.11 0.00 0.00 3.82
2200 2225 6.346598 CGATTTGTCGACAGTCTTTTATGTGT 60.347 38.462 19.11 0.00 34.64 3.72
2201 2226 6.009474 CGATTTGTCGACAGTCTTTTATGTG 58.991 40.000 19.11 2.84 34.64 3.21
2202 2227 5.389516 GCGATTTGTCGACAGTCTTTTATGT 60.390 40.000 19.11 0.00 34.64 2.29
2203 2228 5.015733 GCGATTTGTCGACAGTCTTTTATG 58.984 41.667 19.11 8.26 34.64 1.90
2204 2229 4.201589 CGCGATTTGTCGACAGTCTTTTAT 60.202 41.667 19.11 5.03 34.64 1.40
2205 2230 3.120616 CGCGATTTGTCGACAGTCTTTTA 59.879 43.478 19.11 0.00 34.64 1.52
2206 2231 2.096909 CGCGATTTGTCGACAGTCTTTT 60.097 45.455 19.11 1.22 34.64 2.27
2207 2232 1.455786 CGCGATTTGTCGACAGTCTTT 59.544 47.619 19.11 3.03 34.64 2.52
2208 2233 1.060713 CGCGATTTGTCGACAGTCTT 58.939 50.000 19.11 4.88 34.64 3.01
2209 2234 0.240145 TCGCGATTTGTCGACAGTCT 59.760 50.000 19.11 7.32 34.64 3.24
2210 2235 1.057636 TTCGCGATTTGTCGACAGTC 58.942 50.000 19.11 18.46 34.16 3.51
2211 2236 1.191647 GTTTCGCGATTTGTCGACAGT 59.808 47.619 19.11 11.71 34.16 3.55
2212 2237 1.461888 GGTTTCGCGATTTGTCGACAG 60.462 52.381 19.11 8.28 34.16 3.51
2213 2238 0.509499 GGTTTCGCGATTTGTCGACA 59.491 50.000 15.76 15.76 34.16 4.35
2214 2239 0.509499 TGGTTTCGCGATTTGTCGAC 59.491 50.000 10.88 9.11 34.16 4.20
2215 2240 1.434555 ATGGTTTCGCGATTTGTCGA 58.565 45.000 10.88 0.00 34.64 4.20
2255 2280 7.684317 TTTTCTTTTAGTTTTTCATCCCCCT 57.316 32.000 0.00 0.00 0.00 4.79
2265 2290 9.162764 GCTCTTTTCCCTTTTTCTTTTAGTTTT 57.837 29.630 0.00 0.00 0.00 2.43
2266 2291 8.318412 TGCTCTTTTCCCTTTTTCTTTTAGTTT 58.682 29.630 0.00 0.00 0.00 2.66
2267 2292 7.847096 TGCTCTTTTCCCTTTTTCTTTTAGTT 58.153 30.769 0.00 0.00 0.00 2.24
2268 2293 7.418337 TGCTCTTTTCCCTTTTTCTTTTAGT 57.582 32.000 0.00 0.00 0.00 2.24
2269 2294 7.763985 TGTTGCTCTTTTCCCTTTTTCTTTTAG 59.236 33.333 0.00 0.00 0.00 1.85
2270 2295 7.616313 TGTTGCTCTTTTCCCTTTTTCTTTTA 58.384 30.769 0.00 0.00 0.00 1.52
2271 2296 6.472016 TGTTGCTCTTTTCCCTTTTTCTTTT 58.528 32.000 0.00 0.00 0.00 2.27
2272 2297 6.048732 TGTTGCTCTTTTCCCTTTTTCTTT 57.951 33.333 0.00 0.00 0.00 2.52
2273 2298 5.675684 TGTTGCTCTTTTCCCTTTTTCTT 57.324 34.783 0.00 0.00 0.00 2.52
2274 2299 5.876651 ATGTTGCTCTTTTCCCTTTTTCT 57.123 34.783 0.00 0.00 0.00 2.52
2275 2300 6.048509 TCAATGTTGCTCTTTTCCCTTTTTC 58.951 36.000 0.00 0.00 0.00 2.29
2276 2301 5.988287 TCAATGTTGCTCTTTTCCCTTTTT 58.012 33.333 0.00 0.00 0.00 1.94
2277 2302 5.612725 TCAATGTTGCTCTTTTCCCTTTT 57.387 34.783 0.00 0.00 0.00 2.27
2278 2303 5.279657 GGATCAATGTTGCTCTTTTCCCTTT 60.280 40.000 0.00 0.00 0.00 3.11
2279 2304 4.221482 GGATCAATGTTGCTCTTTTCCCTT 59.779 41.667 0.00 0.00 0.00 3.95
2280 2305 3.766051 GGATCAATGTTGCTCTTTTCCCT 59.234 43.478 0.00 0.00 0.00 4.20
2281 2306 3.766051 AGGATCAATGTTGCTCTTTTCCC 59.234 43.478 0.00 0.00 0.00 3.97
2282 2307 4.437930 CGAGGATCAATGTTGCTCTTTTCC 60.438 45.833 10.35 0.00 33.17 3.13
2283 2308 4.154918 ACGAGGATCAATGTTGCTCTTTTC 59.845 41.667 10.35 0.00 33.17 2.29
2284 2309 4.074970 ACGAGGATCAATGTTGCTCTTTT 58.925 39.130 10.35 0.00 33.17 2.27
2285 2310 3.679389 ACGAGGATCAATGTTGCTCTTT 58.321 40.909 10.35 0.00 33.17 2.52
2286 2311 3.265791 GACGAGGATCAATGTTGCTCTT 58.734 45.455 10.35 2.03 33.17 2.85
2287 2312 2.736719 CGACGAGGATCAATGTTGCTCT 60.737 50.000 10.35 0.00 33.17 4.09
2288 2313 1.590238 CGACGAGGATCAATGTTGCTC 59.410 52.381 3.17 3.17 33.17 4.26
2289 2314 1.204704 TCGACGAGGATCAATGTTGCT 59.795 47.619 0.00 0.00 33.17 3.91
2290 2315 1.590238 CTCGACGAGGATCAATGTTGC 59.410 52.381 17.27 0.00 33.17 4.17
2302 2327 2.202492 CGGCAACTCCTCGACGAG 60.202 66.667 18.08 18.08 35.88 4.18
2303 2328 4.415332 GCGGCAACTCCTCGACGA 62.415 66.667 0.00 0.00 0.00 4.20
2305 2330 4.373116 TGGCGGCAACTCCTCGAC 62.373 66.667 10.22 0.00 43.86 4.20
2306 2331 4.373116 GTGGCGGCAACTCCTCGA 62.373 66.667 15.50 0.00 43.86 4.04
2307 2332 4.680237 TGTGGCGGCAACTCCTCG 62.680 66.667 15.50 0.00 43.86 4.63
2308 2333 1.452145 TTTTGTGGCGGCAACTCCTC 61.452 55.000 15.50 0.00 43.86 3.71
2309 2334 1.040339 TTTTTGTGGCGGCAACTCCT 61.040 50.000 15.50 0.00 43.86 3.69
2310 2335 0.033366 ATTTTTGTGGCGGCAACTCC 59.967 50.000 15.50 0.83 43.76 3.85
2311 2336 1.139163 CATTTTTGTGGCGGCAACTC 58.861 50.000 15.50 1.28 0.00 3.01
2312 2337 0.749649 TCATTTTTGTGGCGGCAACT 59.250 45.000 15.50 0.00 0.00 3.16
2313 2338 0.858583 GTCATTTTTGTGGCGGCAAC 59.141 50.000 15.50 9.00 0.00 4.17
2314 2339 0.596083 CGTCATTTTTGTGGCGGCAA 60.596 50.000 15.50 0.00 43.05 4.52
2315 2340 1.007964 CGTCATTTTTGTGGCGGCA 60.008 52.632 7.97 7.97 43.05 5.69
2316 2341 3.841222 CGTCATTTTTGTGGCGGC 58.159 55.556 0.00 0.00 43.05 6.53
2319 2344 1.408422 GCTCACGTCATTTTTGTGGC 58.592 50.000 0.00 0.00 34.43 5.01
2320 2345 1.673760 CGCTCACGTCATTTTTGTGG 58.326 50.000 0.00 0.00 34.43 4.17
2340 2365 6.599638 CGTGGATCTCACATCTAGACCATATA 59.400 42.308 12.80 0.00 46.36 0.86
2401 2426 6.959671 TTTGTTTGGTTTTCTTAGCACAAG 57.040 33.333 0.00 0.00 0.00 3.16
2403 2428 8.254508 AGTTATTTGTTTGGTTTTCTTAGCACA 58.745 29.630 0.00 0.00 0.00 4.57
2404 2429 8.642908 AGTTATTTGTTTGGTTTTCTTAGCAC 57.357 30.769 0.00 0.00 0.00 4.40
2435 2460 1.600957 GTCATGTGATCAATGGCTCCG 59.399 52.381 0.00 0.00 0.00 4.63
2446 2471 3.997021 GGTGTTTTCTCTCGTCATGTGAT 59.003 43.478 0.00 0.00 0.00 3.06
2461 2486 0.312729 GATTTCGGCGGTGGTGTTTT 59.687 50.000 7.21 0.00 0.00 2.43
2475 2500 5.619981 CGGATTGTCTTCAAAGTGGGATTTC 60.620 44.000 0.00 0.00 37.11 2.17
2485 2510 3.807622 GTGACTGTCGGATTGTCTTCAAA 59.192 43.478 2.98 0.00 37.11 2.69
2493 2518 2.100631 GCGGGTGACTGTCGGATTG 61.101 63.158 2.98 0.00 39.64 2.67
2503 2528 0.605319 TGGTGATGAAAGCGGGTGAC 60.605 55.000 0.00 0.00 0.00 3.67
2519 2544 8.531146 CCAAATTTACCATTTAGAGACATTGGT 58.469 33.333 0.00 0.00 42.99 3.67
2521 2546 7.492344 GCCCAAATTTACCATTTAGAGACATTG 59.508 37.037 0.00 0.00 0.00 2.82
2537 2562 3.517296 TGTCTCAGGTGCCCAAATTTA 57.483 42.857 0.00 0.00 0.00 1.40
2582 2610 0.104120 TCATATCCACGACCTTGGCG 59.896 55.000 0.00 0.00 41.40 5.69
2596 2624 4.127171 GCGTGGTAATTCACAGGTCATAT 58.873 43.478 0.00 0.00 37.50 1.78
2606 2634 2.779755 AGATGGTGCGTGGTAATTCA 57.220 45.000 0.00 0.00 0.00 2.57
2627 2655 4.594123 TCCGTTGAGACATCAAGTTACA 57.406 40.909 0.00 0.00 45.96 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.