Multiple sequence alignment - TraesCS2B01G363600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G363600 chr2B 100.000 3921 0 0 1 3921 517917923 517921843 0.000000e+00 7241.0
1 TraesCS2B01G363600 chr2B 97.491 279 7 0 3107 3385 86540589 86540867 9.860000e-131 477.0
2 TraesCS2B01G363600 chr2B 97.500 40 1 0 3851 3890 766534265 766534304 7.030000e-08 69.4
3 TraesCS2B01G363600 chr2A 98.441 2823 35 6 259 3078 583595401 583598217 0.000000e+00 4961.0
4 TraesCS2B01G363600 chr2A 92.916 367 17 4 3390 3753 583598248 583598608 3.470000e-145 525.0
5 TraesCS2B01G363600 chr2A 96.255 267 10 0 1 267 583595090 583595356 4.650000e-119 438.0
6 TraesCS2B01G363600 chr2A 91.139 79 5 2 188 266 722125629 722125705 5.360000e-19 106.0
7 TraesCS2B01G363600 chr2A 97.727 44 1 0 3878 3921 20326859 20326816 4.200000e-10 76.8
8 TraesCS2B01G363600 chr2D 97.631 2870 38 11 259 3107 440178255 440181115 0.000000e+00 4896.0
9 TraesCS2B01G363600 chr2D 94.366 355 11 5 3388 3738 440181115 440181464 1.600000e-148 536.0
10 TraesCS2B01G363600 chr2D 97.753 267 6 0 1 267 440177941 440178207 9.930000e-126 460.0
11 TraesCS2B01G363600 chr3A 97.500 280 7 0 3107 3386 82479734 82480013 2.740000e-131 479.0
12 TraesCS2B01G363600 chr3A 100.000 40 0 0 3882 3921 514099608 514099569 1.510000e-09 75.0
13 TraesCS2B01G363600 chr1B 97.491 279 7 0 3107 3385 146117481 146117203 9.860000e-131 477.0
14 TraesCS2B01G363600 chr1B 97.143 280 8 0 3107 3386 615614592 615614871 1.280000e-129 473.0
15 TraesCS2B01G363600 chr1B 97.368 38 1 0 3853 3890 42932549 42932512 9.090000e-07 65.8
16 TraesCS2B01G363600 chr5A 97.153 281 8 0 3107 3387 22714813 22714533 3.550000e-130 475.0
17 TraesCS2B01G363600 chr5A 97.143 280 8 0 3106 3385 34705277 34705556 1.280000e-129 473.0
18 TraesCS2B01G363600 chr5A 86.957 69 9 0 3853 3921 582774230 582774162 1.170000e-10 78.7
19 TraesCS2B01G363600 chr3B 96.220 291 9 2 3097 3385 635025202 635025492 3.550000e-130 475.0
20 TraesCS2B01G363600 chr3B 95.578 294 10 3 3092 3385 747709461 747709171 5.930000e-128 468.0
21 TraesCS2B01G363600 chr3B 97.436 39 1 0 3852 3890 797781040 797781078 2.530000e-07 67.6
22 TraesCS2B01G363600 chr5B 97.143 280 8 0 3106 3385 18130556 18130277 1.280000e-129 473.0
23 TraesCS2B01G363600 chr5B 91.429 70 6 0 3852 3921 704220250 704220319 3.220000e-16 97.1
24 TraesCS2B01G363600 chr5B 97.436 39 1 0 3852 3890 478924890 478924928 2.530000e-07 67.6
25 TraesCS2B01G363600 chr6B 79.433 282 44 8 1 274 636798105 636797830 1.860000e-43 187.0
26 TraesCS2B01G363600 chr6D 75.618 283 57 7 1 277 422607647 422607371 3.180000e-26 130.0
27 TraesCS2B01G363600 chr3D 92.754 69 5 0 3853 3921 443902499 443902567 2.490000e-17 100.0
28 TraesCS2B01G363600 chr1D 100.000 41 0 0 3881 3921 253313963 253313923 4.200000e-10 76.8
29 TraesCS2B01G363600 chr7D 100.000 40 0 0 3882 3921 548730616 548730577 1.510000e-09 75.0
30 TraesCS2B01G363600 chr4D 100.000 39 0 0 3883 3921 446987466 446987504 5.430000e-09 73.1
31 TraesCS2B01G363600 chr1A 91.837 49 2 1 3873 3921 584069270 584069316 2.530000e-07 67.6
32 TraesCS2B01G363600 chrUn 97.368 38 1 0 3853 3890 78173366 78173403 9.090000e-07 65.8
33 TraesCS2B01G363600 chr4B 97.368 38 1 0 3853 3890 454869949 454869986 9.090000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G363600 chr2B 517917923 517921843 3920 False 7241.000000 7241 100.000000 1 3921 1 chr2B.!!$F2 3920
1 TraesCS2B01G363600 chr2A 583595090 583598608 3518 False 1974.666667 4961 95.870667 1 3753 3 chr2A.!!$F2 3752
2 TraesCS2B01G363600 chr2D 440177941 440181464 3523 False 1964.000000 4896 96.583333 1 3738 3 chr2D.!!$F1 3737

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 2.220586 TCACCACAATGGCCGGAGA 61.221 57.895 5.05 0.0 42.67 3.71 F
427 486 3.405823 AATCCGAACAAAACCGAGGTA 57.594 42.857 0.00 0.0 0.00 3.08 F
1290 1350 1.380785 CCATCACCATGGCAAGGCT 60.381 57.895 13.04 0.0 43.55 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1290 1350 3.888460 TGGTGCTGCTTGGAGGCA 61.888 61.111 0.0 0.0 40.15 4.75 R
2382 2442 1.072331 ACATTGTTTGGCTCTCCGACT 59.928 47.619 0.0 0.0 34.14 4.18 R
3108 3193 0.043334 ACTCCCACTATGACCAGCCT 59.957 55.000 0.0 0.0 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.061848 GGTCACCACAATGGCCGG 61.062 66.667 0.00 0.00 42.67 6.13
37 38 2.220586 TCACCACAATGGCCGGAGA 61.221 57.895 5.05 0.00 42.67 3.71
306 364 7.761038 AATTCGGGTCTAAATTTGAAAGTCT 57.239 32.000 0.00 0.00 0.00 3.24
321 379 9.952030 ATTTGAAAGTCTAAAAAGGGACAAAAA 57.048 25.926 0.00 0.00 0.00 1.94
427 486 3.405823 AATCCGAACAAAACCGAGGTA 57.594 42.857 0.00 0.00 0.00 3.08
579 638 7.437862 GCAAGAGTAATGAAGGATCAAGAGTAG 59.562 40.741 0.00 0.00 39.49 2.57
580 639 8.474025 CAAGAGTAATGAAGGATCAAGAGTAGT 58.526 37.037 0.00 0.00 39.49 2.73
581 640 9.702253 AAGAGTAATGAAGGATCAAGAGTAGTA 57.298 33.333 0.00 0.00 39.49 1.82
1290 1350 1.380785 CCATCACCATGGCAAGGCT 60.381 57.895 13.04 0.00 43.55 4.58
2229 2289 5.090652 TCAGACGACAAATTTAACAGCAC 57.909 39.130 0.00 0.00 0.00 4.40
2242 2302 7.681939 ATTTAACAGCACGAAATTAGAAGGA 57.318 32.000 0.00 0.00 0.00 3.36
2382 2442 5.628797 TGGTAGCCATGTGAATATCTTCA 57.371 39.130 0.00 0.00 39.07 3.02
2979 3046 3.181329 ACATCACCATGTTCCACCTCTA 58.819 45.455 0.00 0.00 40.66 2.43
2988 3055 5.416083 CATGTTCCACCTCTACGATTAACA 58.584 41.667 0.00 0.00 0.00 2.41
3009 3085 2.071688 TCTTCTTCTCACGCTCAAGC 57.928 50.000 0.00 0.00 37.78 4.01
3109 3194 5.481200 CACTCATGCTTGGATTGTCTAAG 57.519 43.478 0.00 0.00 37.92 2.18
3110 3195 4.334759 CACTCATGCTTGGATTGTCTAAGG 59.665 45.833 5.42 0.00 35.77 2.69
3111 3196 3.282021 TCATGCTTGGATTGTCTAAGGC 58.718 45.455 5.42 0.00 35.77 4.35
3112 3197 3.054139 TCATGCTTGGATTGTCTAAGGCT 60.054 43.478 5.42 0.00 35.77 4.58
3113 3198 2.715046 TGCTTGGATTGTCTAAGGCTG 58.285 47.619 5.42 0.00 35.77 4.85
3114 3199 2.019984 GCTTGGATTGTCTAAGGCTGG 58.980 52.381 5.42 0.00 35.77 4.85
3115 3200 2.619074 GCTTGGATTGTCTAAGGCTGGT 60.619 50.000 5.42 0.00 35.77 4.00
3116 3201 3.274288 CTTGGATTGTCTAAGGCTGGTC 58.726 50.000 0.00 0.00 32.18 4.02
3117 3202 2.265367 TGGATTGTCTAAGGCTGGTCA 58.735 47.619 0.00 0.00 0.00 4.02
3118 3203 2.846206 TGGATTGTCTAAGGCTGGTCAT 59.154 45.455 0.00 0.00 0.00 3.06
3119 3204 4.037222 TGGATTGTCTAAGGCTGGTCATA 58.963 43.478 0.00 0.00 0.00 2.15
3120 3205 4.101585 TGGATTGTCTAAGGCTGGTCATAG 59.898 45.833 0.00 0.00 0.00 2.23
3121 3206 4.101741 GGATTGTCTAAGGCTGGTCATAGT 59.898 45.833 0.00 0.00 0.00 2.12
3122 3207 4.471904 TTGTCTAAGGCTGGTCATAGTG 57.528 45.455 0.00 0.00 0.00 2.74
3123 3208 2.766263 TGTCTAAGGCTGGTCATAGTGG 59.234 50.000 0.00 0.00 0.00 4.00
3124 3209 2.103263 GTCTAAGGCTGGTCATAGTGGG 59.897 54.545 0.00 0.00 0.00 4.61
3125 3210 2.023404 TCTAAGGCTGGTCATAGTGGGA 60.023 50.000 0.00 0.00 0.00 4.37
3126 3211 1.207791 AAGGCTGGTCATAGTGGGAG 58.792 55.000 0.00 0.00 0.00 4.30
3127 3212 0.043334 AGGCTGGTCATAGTGGGAGT 59.957 55.000 0.00 0.00 0.00 3.85
3128 3213 1.291033 AGGCTGGTCATAGTGGGAGTA 59.709 52.381 0.00 0.00 0.00 2.59
3129 3214 2.116238 GGCTGGTCATAGTGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
3130 3215 2.158943 GGCTGGTCATAGTGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
3131 3216 2.500098 GCTGGTCATAGTGGGAGTAACA 59.500 50.000 0.00 0.00 0.00 2.41
3132 3217 3.134804 GCTGGTCATAGTGGGAGTAACAT 59.865 47.826 0.00 0.00 0.00 2.71
3133 3218 4.344102 GCTGGTCATAGTGGGAGTAACATA 59.656 45.833 0.00 0.00 0.00 2.29
3134 3219 5.509840 GCTGGTCATAGTGGGAGTAACATAG 60.510 48.000 0.00 0.00 0.00 2.23
3135 3220 4.899457 TGGTCATAGTGGGAGTAACATAGG 59.101 45.833 0.00 0.00 0.00 2.57
3136 3221 4.900054 GGTCATAGTGGGAGTAACATAGGT 59.100 45.833 0.00 0.00 0.00 3.08
3137 3222 6.073314 GGTCATAGTGGGAGTAACATAGGTA 58.927 44.000 0.00 0.00 0.00 3.08
3138 3223 6.208994 GGTCATAGTGGGAGTAACATAGGTAG 59.791 46.154 0.00 0.00 0.00 3.18
3139 3224 6.776603 GTCATAGTGGGAGTAACATAGGTAGT 59.223 42.308 0.00 0.00 0.00 2.73
3140 3225 7.941238 GTCATAGTGGGAGTAACATAGGTAGTA 59.059 40.741 0.00 0.00 0.00 1.82
3141 3226 8.505246 TCATAGTGGGAGTAACATAGGTAGTAA 58.495 37.037 0.00 0.00 0.00 2.24
3142 3227 8.574737 CATAGTGGGAGTAACATAGGTAGTAAC 58.425 40.741 0.00 0.00 0.00 2.50
3143 3228 6.496743 AGTGGGAGTAACATAGGTAGTAACA 58.503 40.000 0.00 0.00 0.00 2.41
3144 3229 7.130775 AGTGGGAGTAACATAGGTAGTAACAT 58.869 38.462 0.00 0.00 0.00 2.71
3145 3230 8.284435 AGTGGGAGTAACATAGGTAGTAACATA 58.716 37.037 0.00 0.00 0.00 2.29
3146 3231 8.574737 GTGGGAGTAACATAGGTAGTAACATAG 58.425 40.741 0.00 0.00 0.00 2.23
3147 3232 8.505246 TGGGAGTAACATAGGTAGTAACATAGA 58.495 37.037 0.00 0.00 0.00 1.98
3148 3233 9.531158 GGGAGTAACATAGGTAGTAACATAGAT 57.469 37.037 0.00 0.00 0.00 1.98
3154 3239 8.762481 ACATAGGTAGTAACATAGATGTCACA 57.238 34.615 0.00 0.00 40.80 3.58
3155 3240 9.368416 ACATAGGTAGTAACATAGATGTCACAT 57.632 33.333 0.00 0.00 40.80 3.21
3159 3244 8.361139 AGGTAGTAACATAGATGTCACATAAGC 58.639 37.037 0.00 0.00 40.80 3.09
3160 3245 8.141909 GGTAGTAACATAGATGTCACATAAGCA 58.858 37.037 0.00 0.00 40.80 3.91
3161 3246 9.529325 GTAGTAACATAGATGTCACATAAGCAA 57.471 33.333 0.00 0.00 40.80 3.91
3163 3248 9.448438 AGTAACATAGATGTCACATAAGCAAAA 57.552 29.630 0.00 0.00 40.80 2.44
3166 3251 9.577110 AACATAGATGTCACATAAGCAAAATTG 57.423 29.630 0.00 0.00 40.80 2.32
3167 3252 8.192774 ACATAGATGTCACATAAGCAAAATTGG 58.807 33.333 0.00 0.00 35.87 3.16
3168 3253 6.594788 AGATGTCACATAAGCAAAATTGGT 57.405 33.333 0.00 0.00 41.27 3.67
3169 3254 6.392354 AGATGTCACATAAGCAAAATTGGTG 58.608 36.000 0.00 0.00 39.13 4.17
3170 3255 5.781210 TGTCACATAAGCAAAATTGGTGA 57.219 34.783 0.00 0.00 39.13 4.02
3171 3256 6.343716 TGTCACATAAGCAAAATTGGTGAT 57.656 33.333 0.00 0.00 39.13 3.06
3176 3261 2.460757 AGCAAAATTGGTGATGTGGC 57.539 45.000 0.00 0.00 37.53 5.01
3177 3262 1.693062 AGCAAAATTGGTGATGTGGCA 59.307 42.857 0.00 0.00 37.53 4.92
3178 3263 2.104451 AGCAAAATTGGTGATGTGGCAA 59.896 40.909 0.00 0.00 37.53 4.52
3179 3264 2.481185 GCAAAATTGGTGATGTGGCAAG 59.519 45.455 0.00 0.00 0.00 4.01
3180 3265 3.731089 CAAAATTGGTGATGTGGCAAGT 58.269 40.909 0.00 0.00 0.00 3.16
3181 3266 4.798924 GCAAAATTGGTGATGTGGCAAGTA 60.799 41.667 0.00 0.00 0.00 2.24
3182 3267 4.789012 AAATTGGTGATGTGGCAAGTAG 57.211 40.909 0.00 0.00 0.00 2.57
3183 3268 2.949177 TTGGTGATGTGGCAAGTAGT 57.051 45.000 0.00 0.00 0.00 2.73
3184 3269 2.949177 TGGTGATGTGGCAAGTAGTT 57.051 45.000 0.00 0.00 0.00 2.24
3185 3270 4.359434 TTGGTGATGTGGCAAGTAGTTA 57.641 40.909 0.00 0.00 0.00 2.24
3186 3271 4.359434 TGGTGATGTGGCAAGTAGTTAA 57.641 40.909 0.00 0.00 0.00 2.01
3187 3272 4.917385 TGGTGATGTGGCAAGTAGTTAAT 58.083 39.130 0.00 0.00 0.00 1.40
3188 3273 4.699735 TGGTGATGTGGCAAGTAGTTAATG 59.300 41.667 0.00 0.00 0.00 1.90
3189 3274 4.941263 GGTGATGTGGCAAGTAGTTAATGA 59.059 41.667 0.00 0.00 0.00 2.57
3190 3275 5.065218 GGTGATGTGGCAAGTAGTTAATGAG 59.935 44.000 0.00 0.00 0.00 2.90
3191 3276 5.065218 GTGATGTGGCAAGTAGTTAATGAGG 59.935 44.000 0.00 0.00 0.00 3.86
3192 3277 4.901197 TGTGGCAAGTAGTTAATGAGGA 57.099 40.909 0.00 0.00 0.00 3.71
3193 3278 4.832248 TGTGGCAAGTAGTTAATGAGGAG 58.168 43.478 0.00 0.00 0.00 3.69
3194 3279 4.530553 TGTGGCAAGTAGTTAATGAGGAGA 59.469 41.667 0.00 0.00 0.00 3.71
3195 3280 5.112686 GTGGCAAGTAGTTAATGAGGAGAG 58.887 45.833 0.00 0.00 0.00 3.20
3196 3281 5.023452 TGGCAAGTAGTTAATGAGGAGAGA 58.977 41.667 0.00 0.00 0.00 3.10
3197 3282 5.127845 TGGCAAGTAGTTAATGAGGAGAGAG 59.872 44.000 0.00 0.00 0.00 3.20
3198 3283 5.452636 GGCAAGTAGTTAATGAGGAGAGAGG 60.453 48.000 0.00 0.00 0.00 3.69
3199 3284 5.596845 CAAGTAGTTAATGAGGAGAGAGGC 58.403 45.833 0.00 0.00 0.00 4.70
3200 3285 4.873010 AGTAGTTAATGAGGAGAGAGGCA 58.127 43.478 0.00 0.00 0.00 4.75
3201 3286 5.273208 AGTAGTTAATGAGGAGAGAGGCAA 58.727 41.667 0.00 0.00 0.00 4.52
3202 3287 5.721960 AGTAGTTAATGAGGAGAGAGGCAAA 59.278 40.000 0.00 0.00 0.00 3.68
3203 3288 5.707066 AGTTAATGAGGAGAGAGGCAAAT 57.293 39.130 0.00 0.00 0.00 2.32
3204 3289 6.814954 AGTTAATGAGGAGAGAGGCAAATA 57.185 37.500 0.00 0.00 0.00 1.40
3205 3290 6.825610 AGTTAATGAGGAGAGAGGCAAATAG 58.174 40.000 0.00 0.00 0.00 1.73
3206 3291 6.613271 AGTTAATGAGGAGAGAGGCAAATAGA 59.387 38.462 0.00 0.00 0.00 1.98
3207 3292 5.549742 AATGAGGAGAGAGGCAAATAGAG 57.450 43.478 0.00 0.00 0.00 2.43
3208 3293 3.987745 TGAGGAGAGAGGCAAATAGAGT 58.012 45.455 0.00 0.00 0.00 3.24
3209 3294 5.130705 TGAGGAGAGAGGCAAATAGAGTA 57.869 43.478 0.00 0.00 0.00 2.59
3210 3295 5.519808 TGAGGAGAGAGGCAAATAGAGTAA 58.480 41.667 0.00 0.00 0.00 2.24
3211 3296 5.361285 TGAGGAGAGAGGCAAATAGAGTAAC 59.639 44.000 0.00 0.00 0.00 2.50
3212 3297 5.273208 AGGAGAGAGGCAAATAGAGTAACA 58.727 41.667 0.00 0.00 0.00 2.41
3213 3298 5.128008 AGGAGAGAGGCAAATAGAGTAACAC 59.872 44.000 0.00 0.00 0.00 3.32
3214 3299 5.105310 GGAGAGAGGCAAATAGAGTAACACA 60.105 44.000 0.00 0.00 0.00 3.72
3215 3300 6.360370 AGAGAGGCAAATAGAGTAACACAA 57.640 37.500 0.00 0.00 0.00 3.33
3216 3301 6.951971 AGAGAGGCAAATAGAGTAACACAAT 58.048 36.000 0.00 0.00 0.00 2.71
3217 3302 8.079211 AGAGAGGCAAATAGAGTAACACAATA 57.921 34.615 0.00 0.00 0.00 1.90
3218 3303 8.709308 AGAGAGGCAAATAGAGTAACACAATAT 58.291 33.333 0.00 0.00 0.00 1.28
3219 3304 8.668510 AGAGGCAAATAGAGTAACACAATATG 57.331 34.615 0.00 0.00 0.00 1.78
3220 3305 8.267894 AGAGGCAAATAGAGTAACACAATATGT 58.732 33.333 0.00 0.00 46.42 2.29
3234 3319 7.496529 ACACAATATGTTACCATCACATAGC 57.503 36.000 0.00 0.00 38.98 2.97
3235 3320 6.202762 ACACAATATGTTACCATCACATAGCG 59.797 38.462 0.00 0.00 38.98 4.26
3236 3321 5.700832 ACAATATGTTACCATCACATAGCGG 59.299 40.000 0.00 0.00 39.83 5.52
3237 3322 3.838244 ATGTTACCATCACATAGCGGT 57.162 42.857 0.00 0.00 32.88 5.68
3238 3323 3.620427 TGTTACCATCACATAGCGGTT 57.380 42.857 0.00 0.00 32.81 4.44
3239 3324 3.945346 TGTTACCATCACATAGCGGTTT 58.055 40.909 0.00 0.00 32.81 3.27
3240 3325 3.936453 TGTTACCATCACATAGCGGTTTC 59.064 43.478 0.00 0.00 32.81 2.78
3241 3326 2.038387 ACCATCACATAGCGGTTTCC 57.962 50.000 0.00 0.00 0.00 3.13
3242 3327 1.280710 ACCATCACATAGCGGTTTCCA 59.719 47.619 0.00 0.00 0.00 3.53
3243 3328 2.290641 ACCATCACATAGCGGTTTCCAA 60.291 45.455 0.00 0.00 0.00 3.53
3244 3329 2.951642 CCATCACATAGCGGTTTCCAAT 59.048 45.455 0.00 0.00 0.00 3.16
3245 3330 3.243168 CCATCACATAGCGGTTTCCAATG 60.243 47.826 0.00 0.00 0.00 2.82
3246 3331 1.742831 TCACATAGCGGTTTCCAATGC 59.257 47.619 0.00 0.00 0.00 3.56
3247 3332 1.472082 CACATAGCGGTTTCCAATGCA 59.528 47.619 0.00 0.00 0.00 3.96
3248 3333 2.099592 CACATAGCGGTTTCCAATGCAT 59.900 45.455 0.00 0.00 0.00 3.96
3249 3334 3.314913 CACATAGCGGTTTCCAATGCATA 59.685 43.478 0.00 0.00 0.00 3.14
3250 3335 3.951037 ACATAGCGGTTTCCAATGCATAA 59.049 39.130 0.00 0.00 0.00 1.90
3251 3336 4.584325 ACATAGCGGTTTCCAATGCATAAT 59.416 37.500 0.00 0.00 0.00 1.28
3252 3337 3.441496 AGCGGTTTCCAATGCATAATG 57.559 42.857 0.00 0.00 0.00 1.90
3253 3338 3.023119 AGCGGTTTCCAATGCATAATGA 58.977 40.909 0.00 0.00 0.00 2.57
3254 3339 3.067180 AGCGGTTTCCAATGCATAATGAG 59.933 43.478 0.00 0.00 0.00 2.90
3255 3340 3.181487 GCGGTTTCCAATGCATAATGAGT 60.181 43.478 0.00 0.00 0.00 3.41
3256 3341 4.601019 CGGTTTCCAATGCATAATGAGTC 58.399 43.478 0.00 0.00 0.00 3.36
3257 3342 4.336433 CGGTTTCCAATGCATAATGAGTCT 59.664 41.667 0.00 0.00 0.00 3.24
3258 3343 5.527214 CGGTTTCCAATGCATAATGAGTCTA 59.473 40.000 0.00 0.00 0.00 2.59
3259 3344 6.511767 CGGTTTCCAATGCATAATGAGTCTAC 60.512 42.308 0.00 0.00 0.00 2.59
3260 3345 6.318648 GGTTTCCAATGCATAATGAGTCTACA 59.681 38.462 0.00 0.00 0.00 2.74
3261 3346 7.148086 GGTTTCCAATGCATAATGAGTCTACAA 60.148 37.037 0.00 0.00 0.00 2.41
3262 3347 7.936496 TTCCAATGCATAATGAGTCTACAAA 57.064 32.000 0.00 0.00 0.00 2.83
3263 3348 7.558161 TCCAATGCATAATGAGTCTACAAAG 57.442 36.000 0.00 0.00 0.00 2.77
3264 3349 7.112122 TCCAATGCATAATGAGTCTACAAAGT 58.888 34.615 0.00 0.00 0.00 2.66
3265 3350 8.264347 TCCAATGCATAATGAGTCTACAAAGTA 58.736 33.333 0.00 0.00 0.00 2.24
3266 3351 8.892723 CCAATGCATAATGAGTCTACAAAGTAA 58.107 33.333 0.00 0.00 0.00 2.24
3292 3377 9.733556 ATAAATGAAGACAACTATGTTACCACA 57.266 29.630 0.00 0.00 40.74 4.17
3293 3378 8.635765 AAATGAAGACAACTATGTTACCACAT 57.364 30.769 0.00 0.00 46.07 3.21
3294 3379 7.849804 ATGAAGACAACTATGTTACCACATC 57.150 36.000 0.00 0.00 43.06 3.06
3295 3380 7.004555 TGAAGACAACTATGTTACCACATCT 57.995 36.000 0.00 0.00 43.06 2.90
3296 3381 8.129496 TGAAGACAACTATGTTACCACATCTA 57.871 34.615 0.00 0.00 43.06 1.98
3297 3382 8.758829 TGAAGACAACTATGTTACCACATCTAT 58.241 33.333 0.00 0.00 43.06 1.98
3298 3383 8.948631 AAGACAACTATGTTACCACATCTATG 57.051 34.615 0.00 0.00 43.06 2.23
3299 3384 8.306313 AGACAACTATGTTACCACATCTATGA 57.694 34.615 0.00 0.00 43.06 2.15
3300 3385 8.198109 AGACAACTATGTTACCACATCTATGAC 58.802 37.037 0.00 0.00 43.06 3.06
3301 3386 7.847096 ACAACTATGTTACCACATCTATGACA 58.153 34.615 0.00 0.00 43.06 3.58
3302 3387 7.764443 ACAACTATGTTACCACATCTATGACAC 59.236 37.037 0.00 0.00 43.06 3.67
3303 3388 7.661536 ACTATGTTACCACATCTATGACACT 57.338 36.000 0.00 0.00 43.06 3.55
3304 3389 8.762481 ACTATGTTACCACATCTATGACACTA 57.238 34.615 0.00 0.00 43.06 2.74
3305 3390 8.630917 ACTATGTTACCACATCTATGACACTAC 58.369 37.037 0.00 0.00 43.06 2.73
3306 3391 6.216801 TGTTACCACATCTATGACACTACC 57.783 41.667 0.00 0.00 0.00 3.18
3307 3392 5.128171 TGTTACCACATCTATGACACTACCC 59.872 44.000 0.00 0.00 0.00 3.69
3308 3393 3.719871 ACCACATCTATGACACTACCCA 58.280 45.455 0.00 0.00 0.00 4.51
3309 3394 3.451178 ACCACATCTATGACACTACCCAC 59.549 47.826 0.00 0.00 0.00 4.61
3310 3395 3.706594 CCACATCTATGACACTACCCACT 59.293 47.826 0.00 0.00 0.00 4.00
3311 3396 4.893524 CCACATCTATGACACTACCCACTA 59.106 45.833 0.00 0.00 0.00 2.74
3312 3397 5.540337 CCACATCTATGACACTACCCACTAT 59.460 44.000 0.00 0.00 0.00 2.12
3313 3398 6.719829 CCACATCTATGACACTACCCACTATA 59.280 42.308 0.00 0.00 0.00 1.31
3314 3399 7.232737 CCACATCTATGACACTACCCACTATAA 59.767 40.741 0.00 0.00 0.00 0.98
3315 3400 8.638873 CACATCTATGACACTACCCACTATAAA 58.361 37.037 0.00 0.00 0.00 1.40
3316 3401 8.861086 ACATCTATGACACTACCCACTATAAAG 58.139 37.037 0.00 0.00 0.00 1.85
3317 3402 7.834881 TCTATGACACTACCCACTATAAAGG 57.165 40.000 0.00 0.00 0.00 3.11
3318 3403 7.359849 TCTATGACACTACCCACTATAAAGGT 58.640 38.462 0.00 0.00 37.69 3.50
3319 3404 8.505246 TCTATGACACTACCCACTATAAAGGTA 58.495 37.037 0.00 0.00 35.02 3.08
3330 3415 9.140874 ACCCACTATAAAGGTAGTAACATAGAC 57.859 37.037 0.00 0.00 33.29 2.59
3331 3416 9.364653 CCCACTATAAAGGTAGTAACATAGACT 57.635 37.037 0.00 0.00 33.29 3.24
3375 3460 8.910944 ACTAGTCTAAGTTACTTTTCACTGTGA 58.089 33.333 6.36 6.36 0.00 3.58
3376 3461 9.182933 CTAGTCTAAGTTACTTTTCACTGTGAC 57.817 37.037 10.56 0.00 0.00 3.67
3377 3462 6.985059 AGTCTAAGTTACTTTTCACTGTGACC 59.015 38.462 10.56 0.00 31.58 4.02
3378 3463 6.759827 GTCTAAGTTACTTTTCACTGTGACCA 59.240 38.462 10.56 0.00 0.00 4.02
3379 3464 6.984474 TCTAAGTTACTTTTCACTGTGACCAG 59.016 38.462 10.56 11.41 44.68 4.00
3380 3465 3.877508 AGTTACTTTTCACTGTGACCAGC 59.122 43.478 10.56 0.00 42.81 4.85
3381 3466 1.680338 ACTTTTCACTGTGACCAGCC 58.320 50.000 10.56 0.00 42.81 4.85
3382 3467 1.212935 ACTTTTCACTGTGACCAGCCT 59.787 47.619 10.56 0.00 42.81 4.58
3383 3468 2.438021 ACTTTTCACTGTGACCAGCCTA 59.562 45.455 10.56 0.00 42.81 3.93
3384 3469 3.118038 ACTTTTCACTGTGACCAGCCTAA 60.118 43.478 10.56 0.00 42.81 2.69
3385 3470 2.543777 TTCACTGTGACCAGCCTAAC 57.456 50.000 10.56 0.00 42.81 2.34
3386 3471 1.419381 TCACTGTGACCAGCCTAACA 58.581 50.000 6.36 0.00 42.81 2.41
3399 3484 1.586422 CCTAACATGACATGCCTCCG 58.414 55.000 15.49 0.31 0.00 4.63
3424 3513 1.089112 TTGCATGGAATCGCAGACAG 58.911 50.000 0.00 0.00 42.51 3.51
3746 3838 3.128681 GGCCATCTAGGACGGTAGT 57.871 57.895 0.00 0.00 41.22 2.73
3747 3839 2.283145 GGCCATCTAGGACGGTAGTA 57.717 55.000 0.00 0.00 41.22 1.82
3748 3840 2.805194 GGCCATCTAGGACGGTAGTAT 58.195 52.381 0.00 0.00 41.22 2.12
3749 3841 3.960571 GGCCATCTAGGACGGTAGTATA 58.039 50.000 0.00 0.00 41.22 1.47
3750 3842 3.946558 GGCCATCTAGGACGGTAGTATAG 59.053 52.174 0.00 0.00 41.22 1.31
3751 3843 4.567327 GGCCATCTAGGACGGTAGTATAGT 60.567 50.000 0.00 0.00 41.22 2.12
3752 3844 5.338708 GGCCATCTAGGACGGTAGTATAGTA 60.339 48.000 0.00 0.00 41.22 1.82
3753 3845 6.355747 GCCATCTAGGACGGTAGTATAGTAT 58.644 44.000 0.00 0.00 41.22 2.12
3754 3846 6.827762 GCCATCTAGGACGGTAGTATAGTATT 59.172 42.308 0.00 0.00 41.22 1.89
3755 3847 7.338957 GCCATCTAGGACGGTAGTATAGTATTT 59.661 40.741 0.00 0.00 41.22 1.40
3756 3848 9.240734 CCATCTAGGACGGTAGTATAGTATTTT 57.759 37.037 0.00 0.00 41.22 1.82
3774 3866 2.622546 TTTTCCGCGAATACTTTGCC 57.377 45.000 8.23 0.00 36.70 4.52
3775 3867 1.816074 TTTCCGCGAATACTTTGCCT 58.184 45.000 8.23 0.00 36.70 4.75
3776 3868 2.676632 TTCCGCGAATACTTTGCCTA 57.323 45.000 8.23 0.00 36.70 3.93
3777 3869 2.902705 TCCGCGAATACTTTGCCTAT 57.097 45.000 8.23 0.00 36.70 2.57
3778 3870 2.750948 TCCGCGAATACTTTGCCTATC 58.249 47.619 8.23 0.00 36.70 2.08
3779 3871 2.101750 TCCGCGAATACTTTGCCTATCA 59.898 45.455 8.23 0.00 36.70 2.15
3780 3872 3.067106 CCGCGAATACTTTGCCTATCAT 58.933 45.455 8.23 0.00 36.70 2.45
3781 3873 3.498397 CCGCGAATACTTTGCCTATCATT 59.502 43.478 8.23 0.00 36.70 2.57
3782 3874 4.457810 CGCGAATACTTTGCCTATCATTG 58.542 43.478 0.00 0.00 36.70 2.82
3783 3875 4.222114 GCGAATACTTTGCCTATCATTGC 58.778 43.478 0.00 0.00 33.83 3.56
3784 3876 4.261155 GCGAATACTTTGCCTATCATTGCA 60.261 41.667 0.00 0.00 33.83 4.08
3785 3877 5.563475 GCGAATACTTTGCCTATCATTGCAT 60.563 40.000 0.00 0.00 37.33 3.96
3786 3878 6.441274 CGAATACTTTGCCTATCATTGCATT 58.559 36.000 0.00 0.00 37.33 3.56
3787 3879 6.361481 CGAATACTTTGCCTATCATTGCATTG 59.639 38.462 2.08 2.08 37.33 2.82
3788 3880 6.964807 ATACTTTGCCTATCATTGCATTGA 57.035 33.333 13.30 13.30 37.33 2.57
3789 3881 5.864418 ACTTTGCCTATCATTGCATTGAT 57.136 34.783 23.42 23.42 39.60 2.57
3790 3882 6.964807 ACTTTGCCTATCATTGCATTGATA 57.035 33.333 23.20 23.20 37.51 2.15
3797 3889 6.738832 CTATCATTGCATTGATAGGTGGAG 57.261 41.667 32.48 19.43 46.24 3.86
3798 3890 4.508551 TCATTGCATTGATAGGTGGAGT 57.491 40.909 7.19 0.00 0.00 3.85
3799 3891 4.201657 TCATTGCATTGATAGGTGGAGTG 58.798 43.478 7.19 0.00 0.00 3.51
3800 3892 3.998913 TTGCATTGATAGGTGGAGTGA 57.001 42.857 0.00 0.00 0.00 3.41
3801 3893 3.998913 TGCATTGATAGGTGGAGTGAA 57.001 42.857 0.00 0.00 0.00 3.18
3802 3894 4.299586 TGCATTGATAGGTGGAGTGAAA 57.700 40.909 0.00 0.00 0.00 2.69
3803 3895 4.858850 TGCATTGATAGGTGGAGTGAAAT 58.141 39.130 0.00 0.00 0.00 2.17
3804 3896 5.263599 TGCATTGATAGGTGGAGTGAAATT 58.736 37.500 0.00 0.00 0.00 1.82
3805 3897 5.357878 TGCATTGATAGGTGGAGTGAAATTC 59.642 40.000 0.00 0.00 0.00 2.17
3806 3898 5.357878 GCATTGATAGGTGGAGTGAAATTCA 59.642 40.000 0.00 0.00 0.00 2.57
3807 3899 6.040166 GCATTGATAGGTGGAGTGAAATTCAT 59.960 38.462 0.00 0.00 0.00 2.57
3808 3900 7.229306 GCATTGATAGGTGGAGTGAAATTCATA 59.771 37.037 0.00 0.00 0.00 2.15
3809 3901 9.123902 CATTGATAGGTGGAGTGAAATTCATAA 57.876 33.333 0.00 0.00 0.00 1.90
3810 3902 9.699410 ATTGATAGGTGGAGTGAAATTCATAAA 57.301 29.630 0.00 0.00 0.00 1.40
3811 3903 9.699410 TTGATAGGTGGAGTGAAATTCATAAAT 57.301 29.630 0.00 0.00 0.00 1.40
3812 3904 9.699410 TGATAGGTGGAGTGAAATTCATAAATT 57.301 29.630 0.00 0.00 36.64 1.82
3813 3905 9.956720 GATAGGTGGAGTGAAATTCATAAATTG 57.043 33.333 0.00 0.00 35.27 2.32
3814 3906 7.174107 AGGTGGAGTGAAATTCATAAATTGG 57.826 36.000 0.00 0.00 35.27 3.16
3815 3907 6.725834 AGGTGGAGTGAAATTCATAAATTGGT 59.274 34.615 0.00 0.00 35.27 3.67
3816 3908 7.235399 AGGTGGAGTGAAATTCATAAATTGGTT 59.765 33.333 0.00 0.00 35.27 3.67
3817 3909 8.527810 GGTGGAGTGAAATTCATAAATTGGTTA 58.472 33.333 0.00 0.00 35.27 2.85
3834 3926 9.863845 AAATTGGTTATAGAATGGTTTAAACGG 57.136 29.630 12.07 0.00 0.00 4.44
3835 3927 8.810990 ATTGGTTATAGAATGGTTTAAACGGA 57.189 30.769 12.07 1.93 0.00 4.69
3836 3928 7.614124 TGGTTATAGAATGGTTTAAACGGAC 57.386 36.000 12.07 4.25 0.00 4.79
3837 3929 6.598850 TGGTTATAGAATGGTTTAAACGGACC 59.401 38.462 12.07 9.07 36.45 4.46
3838 3930 6.238184 GGTTATAGAATGGTTTAAACGGACCG 60.238 42.308 13.61 13.61 38.81 4.79
3839 3931 2.429478 AGAATGGTTTAAACGGACCGG 58.571 47.619 20.00 0.00 38.81 5.28
3840 3932 0.883153 AATGGTTTAAACGGACCGGC 59.117 50.000 20.00 0.00 38.81 6.13
3841 3933 0.961857 ATGGTTTAAACGGACCGGCC 60.962 55.000 20.00 10.35 38.81 6.13
3842 3934 1.600356 GGTTTAAACGGACCGGCCA 60.600 57.895 20.00 0.00 35.94 5.36
3843 3935 1.579964 GGTTTAAACGGACCGGCCAG 61.580 60.000 20.00 0.00 35.94 4.85
3844 3936 1.967494 TTTAAACGGACCGGCCAGC 60.967 57.895 20.00 0.00 35.94 4.85
3845 3937 2.400269 TTTAAACGGACCGGCCAGCT 62.400 55.000 20.00 0.00 35.94 4.24
3846 3938 1.543065 TTAAACGGACCGGCCAGCTA 61.543 55.000 20.00 0.00 35.94 3.32
3847 3939 1.952102 TAAACGGACCGGCCAGCTAG 61.952 60.000 20.00 0.00 35.94 3.42
3850 3942 3.866582 GGACCGGCCAGCTAGCAT 61.867 66.667 18.83 0.00 36.34 3.79
3851 3943 2.590007 GACCGGCCAGCTAGCATG 60.590 66.667 18.83 11.93 0.00 4.06
3852 3944 3.391665 GACCGGCCAGCTAGCATGT 62.392 63.158 18.83 1.68 0.00 3.21
3853 3945 2.028125 GACCGGCCAGCTAGCATGTA 62.028 60.000 18.83 0.00 0.00 2.29
3854 3946 1.595382 CCGGCCAGCTAGCATGTAC 60.595 63.158 18.83 6.68 0.00 2.90
3855 3947 1.443407 CGGCCAGCTAGCATGTACT 59.557 57.895 18.83 0.00 0.00 2.73
3856 3948 0.598680 CGGCCAGCTAGCATGTACTC 60.599 60.000 18.83 0.00 0.00 2.59
3857 3949 0.250081 GGCCAGCTAGCATGTACTCC 60.250 60.000 18.83 4.09 0.00 3.85
3858 3950 0.250081 GCCAGCTAGCATGTACTCCC 60.250 60.000 18.83 0.00 0.00 4.30
3859 3951 1.418334 CCAGCTAGCATGTACTCCCT 58.582 55.000 18.83 0.00 0.00 4.20
3860 3952 1.765314 CCAGCTAGCATGTACTCCCTT 59.235 52.381 18.83 0.00 0.00 3.95
3861 3953 2.224161 CCAGCTAGCATGTACTCCCTTC 60.224 54.545 18.83 0.00 0.00 3.46
3862 3954 1.683917 AGCTAGCATGTACTCCCTTCG 59.316 52.381 18.83 0.00 0.00 3.79
3863 3955 1.409427 GCTAGCATGTACTCCCTTCGT 59.591 52.381 10.63 0.00 0.00 3.85
3864 3956 2.544069 GCTAGCATGTACTCCCTTCGTC 60.544 54.545 10.63 0.00 0.00 4.20
3865 3957 1.853963 AGCATGTACTCCCTTCGTCT 58.146 50.000 0.00 0.00 0.00 4.18
3866 3958 3.014304 AGCATGTACTCCCTTCGTCTA 57.986 47.619 0.00 0.00 0.00 2.59
3867 3959 2.952978 AGCATGTACTCCCTTCGTCTAG 59.047 50.000 0.00 0.00 0.00 2.43
3868 3960 2.950309 GCATGTACTCCCTTCGTCTAGA 59.050 50.000 0.00 0.00 0.00 2.43
3869 3961 3.570550 GCATGTACTCCCTTCGTCTAGAT 59.429 47.826 0.00 0.00 0.00 1.98
3870 3962 4.557695 GCATGTACTCCCTTCGTCTAGATG 60.558 50.000 5.53 5.53 0.00 2.90
3871 3963 4.498894 TGTACTCCCTTCGTCTAGATGA 57.501 45.455 10.73 10.73 0.00 2.92
3872 3964 4.452825 TGTACTCCCTTCGTCTAGATGAG 58.547 47.826 14.20 9.01 0.00 2.90
3873 3965 3.655615 ACTCCCTTCGTCTAGATGAGT 57.344 47.619 14.20 6.39 31.78 3.41
3874 3966 4.774660 ACTCCCTTCGTCTAGATGAGTA 57.225 45.455 14.20 0.78 33.60 2.59
3875 3967 5.113446 ACTCCCTTCGTCTAGATGAGTAA 57.887 43.478 14.20 0.08 33.60 2.24
3876 3968 5.127491 ACTCCCTTCGTCTAGATGAGTAAG 58.873 45.833 14.20 9.45 33.60 2.34
3877 3969 5.113446 TCCCTTCGTCTAGATGAGTAAGT 57.887 43.478 14.20 0.00 0.00 2.24
3878 3970 5.124645 TCCCTTCGTCTAGATGAGTAAGTC 58.875 45.833 14.20 0.00 0.00 3.01
3879 3971 4.882427 CCCTTCGTCTAGATGAGTAAGTCA 59.118 45.833 14.20 0.00 40.38 3.41
3891 3983 6.875972 ATGAGTAAGTCATCTTAGGTTGGT 57.124 37.500 0.00 0.00 42.80 3.67
3892 3984 6.282199 TGAGTAAGTCATCTTAGGTTGGTC 57.718 41.667 0.00 0.00 36.90 4.02
3893 3985 5.778241 TGAGTAAGTCATCTTAGGTTGGTCA 59.222 40.000 0.00 0.00 36.90 4.02
3894 3986 6.440647 TGAGTAAGTCATCTTAGGTTGGTCAT 59.559 38.462 0.00 0.00 36.90 3.06
3895 3987 7.618117 TGAGTAAGTCATCTTAGGTTGGTCATA 59.382 37.037 0.00 0.00 36.90 2.15
3896 3988 8.012957 AGTAAGTCATCTTAGGTTGGTCATAG 57.987 38.462 0.00 0.00 36.90 2.23
3897 3989 6.875972 AAGTCATCTTAGGTTGGTCATAGT 57.124 37.500 0.00 0.00 31.46 2.12
3898 3990 6.227298 AGTCATCTTAGGTTGGTCATAGTG 57.773 41.667 0.00 0.00 0.00 2.74
3899 3991 5.129485 AGTCATCTTAGGTTGGTCATAGTGG 59.871 44.000 0.00 0.00 0.00 4.00
3900 3992 4.408921 TCATCTTAGGTTGGTCATAGTGGG 59.591 45.833 0.00 0.00 0.00 4.61
3901 3993 4.069312 TCTTAGGTTGGTCATAGTGGGA 57.931 45.455 0.00 0.00 0.00 4.37
3902 3994 4.030913 TCTTAGGTTGGTCATAGTGGGAG 58.969 47.826 0.00 0.00 0.00 4.30
3903 3995 2.344093 AGGTTGGTCATAGTGGGAGT 57.656 50.000 0.00 0.00 0.00 3.85
3904 3996 3.484953 AGGTTGGTCATAGTGGGAGTA 57.515 47.619 0.00 0.00 0.00 2.59
3905 3997 3.798515 AGGTTGGTCATAGTGGGAGTAA 58.201 45.455 0.00 0.00 0.00 2.24
3906 3998 3.518303 AGGTTGGTCATAGTGGGAGTAAC 59.482 47.826 0.00 0.00 0.00 2.50
3907 3999 3.518303 GGTTGGTCATAGTGGGAGTAACT 59.482 47.826 0.00 0.00 0.00 2.24
3908 4000 4.019591 GGTTGGTCATAGTGGGAGTAACTT 60.020 45.833 0.00 0.00 0.00 2.66
3909 4001 5.188359 GGTTGGTCATAGTGGGAGTAACTTA 59.812 44.000 0.00 0.00 0.00 2.24
3910 4002 6.338937 GTTGGTCATAGTGGGAGTAACTTAG 58.661 44.000 0.00 0.00 0.00 2.18
3911 4003 4.404715 TGGTCATAGTGGGAGTAACTTAGC 59.595 45.833 0.00 0.00 0.00 3.09
3912 4004 4.404715 GGTCATAGTGGGAGTAACTTAGCA 59.595 45.833 0.00 0.00 0.00 3.49
3913 4005 5.105064 GGTCATAGTGGGAGTAACTTAGCAA 60.105 44.000 0.00 0.00 0.00 3.91
3914 4006 6.043411 GTCATAGTGGGAGTAACTTAGCAAG 58.957 44.000 0.00 0.00 0.00 4.01
3915 4007 5.720041 TCATAGTGGGAGTAACTTAGCAAGT 59.280 40.000 0.00 0.00 45.46 3.16
3916 4008 6.893554 TCATAGTGGGAGTAACTTAGCAAGTA 59.106 38.462 2.60 0.00 41.91 2.24
3917 4009 7.398047 TCATAGTGGGAGTAACTTAGCAAGTAA 59.602 37.037 2.60 0.00 41.91 2.24
3918 4010 5.791666 AGTGGGAGTAACTTAGCAAGTAAC 58.208 41.667 2.60 0.00 41.91 2.50
3919 4011 5.306160 AGTGGGAGTAACTTAGCAAGTAACA 59.694 40.000 2.60 0.00 41.91 2.41
3920 4012 6.013639 AGTGGGAGTAACTTAGCAAGTAACAT 60.014 38.462 2.60 0.00 41.91 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.479993 AGGCGCCTGCACCATCTC 62.480 66.667 32.33 0.00 45.35 2.75
126 127 2.342279 CCGTCGGCCTCTTTGTCA 59.658 61.111 0.00 0.00 0.00 3.58
177 178 4.916099 AAAACACTAGATAAACGGTCGC 57.084 40.909 0.00 0.00 0.00 5.19
306 364 9.069082 TCGTATCTCAATTTTTGTCCCTTTTTA 57.931 29.630 0.00 0.00 0.00 1.52
321 379 1.112113 ACAGGCCGTCGTATCTCAAT 58.888 50.000 0.00 0.00 0.00 2.57
427 486 2.738743 CAAGGCCAACTCCAACCATAT 58.261 47.619 5.01 0.00 0.00 1.78
579 638 7.919091 TGAATGTTCAGTGTAAGTCGGATATAC 59.081 37.037 0.00 0.00 32.50 1.47
580 639 8.002984 TGAATGTTCAGTGTAAGTCGGATATA 57.997 34.615 0.00 0.00 32.50 0.86
581 640 6.873997 TGAATGTTCAGTGTAAGTCGGATAT 58.126 36.000 0.00 0.00 32.50 1.63
1290 1350 3.888460 TGGTGCTGCTTGGAGGCA 61.888 61.111 0.00 0.00 40.15 4.75
2163 2223 3.005684 TGGTGCCTAAAAGAGTTGCAATG 59.994 43.478 0.59 0.00 33.11 2.82
2229 2289 6.038603 TCAATGCTTCCATCCTTCTAATTTCG 59.961 38.462 0.00 0.00 0.00 3.46
2242 2302 7.356089 ACAATGAATACATCAATGCTTCCAT 57.644 32.000 0.00 0.00 41.78 3.41
2382 2442 1.072331 ACATTGTTTGGCTCTCCGACT 59.928 47.619 0.00 0.00 34.14 4.18
2570 2630 5.787062 CGCATTAAGTATCATTCTCATTGCG 59.213 40.000 0.00 0.00 0.00 4.85
2574 2634 8.501580 CATGTTCGCATTAAGTATCATTCTCAT 58.498 33.333 0.00 0.00 35.23 2.90
2578 2638 8.338259 AGAACATGTTCGCATTAAGTATCATTC 58.662 33.333 28.18 3.45 43.97 2.67
2788 2849 3.702048 GCCTGGTGCTCCGTGGTA 61.702 66.667 15.16 0.00 36.87 3.25
2979 3046 5.062308 GCGTGAGAAGAAGAATGTTAATCGT 59.938 40.000 0.00 0.00 0.00 3.73
2988 3055 2.999355 GCTTGAGCGTGAGAAGAAGAAT 59.001 45.455 0.00 0.00 0.00 2.40
3009 3085 5.579718 ACGTTAATCGGAGAGTTGTGATAG 58.420 41.667 0.00 0.00 43.63 2.08
3069 3148 0.312102 TGCGTGACTCAGACTGTCTG 59.688 55.000 27.73 27.73 45.59 3.51
3102 3187 2.766263 CCACTATGACCAGCCTTAGACA 59.234 50.000 0.00 0.00 0.00 3.41
3106 3191 2.292918 ACTCCCACTATGACCAGCCTTA 60.293 50.000 0.00 0.00 0.00 2.69
3107 3192 1.207791 CTCCCACTATGACCAGCCTT 58.792 55.000 0.00 0.00 0.00 4.35
3108 3193 0.043334 ACTCCCACTATGACCAGCCT 59.957 55.000 0.00 0.00 0.00 4.58
3109 3194 1.789523 TACTCCCACTATGACCAGCC 58.210 55.000 0.00 0.00 0.00 4.85
3110 3195 2.500098 TGTTACTCCCACTATGACCAGC 59.500 50.000 0.00 0.00 0.00 4.85
3111 3196 5.011125 CCTATGTTACTCCCACTATGACCAG 59.989 48.000 0.00 0.00 0.00 4.00
3112 3197 4.899457 CCTATGTTACTCCCACTATGACCA 59.101 45.833 0.00 0.00 0.00 4.02
3113 3198 4.900054 ACCTATGTTACTCCCACTATGACC 59.100 45.833 0.00 0.00 0.00 4.02
3114 3199 6.776603 ACTACCTATGTTACTCCCACTATGAC 59.223 42.308 0.00 0.00 0.00 3.06
3115 3200 6.919158 ACTACCTATGTTACTCCCACTATGA 58.081 40.000 0.00 0.00 0.00 2.15
3116 3201 8.574737 GTTACTACCTATGTTACTCCCACTATG 58.425 40.741 0.00 0.00 0.00 2.23
3117 3202 8.284435 TGTTACTACCTATGTTACTCCCACTAT 58.716 37.037 0.00 0.00 0.00 2.12
3118 3203 7.642186 TGTTACTACCTATGTTACTCCCACTA 58.358 38.462 0.00 0.00 0.00 2.74
3119 3204 6.496743 TGTTACTACCTATGTTACTCCCACT 58.503 40.000 0.00 0.00 0.00 4.00
3120 3205 6.780457 TGTTACTACCTATGTTACTCCCAC 57.220 41.667 0.00 0.00 0.00 4.61
3121 3206 8.505246 TCTATGTTACTACCTATGTTACTCCCA 58.495 37.037 0.00 0.00 0.00 4.37
3122 3207 8.930846 TCTATGTTACTACCTATGTTACTCCC 57.069 38.462 0.00 0.00 0.00 4.30
3128 3213 9.197306 TGTGACATCTATGTTACTACCTATGTT 57.803 33.333 16.14 0.00 44.65 2.71
3129 3214 8.762481 TGTGACATCTATGTTACTACCTATGT 57.238 34.615 16.14 0.00 44.65 2.29
3133 3218 8.361139 GCTTATGTGACATCTATGTTACTACCT 58.639 37.037 16.14 4.74 44.65 3.08
3134 3219 8.141909 TGCTTATGTGACATCTATGTTACTACC 58.858 37.037 16.14 4.63 44.65 3.18
3135 3220 9.529325 TTGCTTATGTGACATCTATGTTACTAC 57.471 33.333 16.14 6.65 44.65 2.73
3137 3222 9.448438 TTTTGCTTATGTGACATCTATGTTACT 57.552 29.630 16.14 7.15 44.65 2.24
3140 3225 9.577110 CAATTTTGCTTATGTGACATCTATGTT 57.423 29.630 0.00 0.00 41.95 2.71
3141 3226 8.192774 CCAATTTTGCTTATGTGACATCTATGT 58.807 33.333 0.00 0.00 45.16 2.29
3142 3227 8.192774 ACCAATTTTGCTTATGTGACATCTATG 58.807 33.333 0.00 0.00 0.00 2.23
3143 3228 8.192774 CACCAATTTTGCTTATGTGACATCTAT 58.807 33.333 0.00 0.00 0.00 1.98
3144 3229 7.392953 TCACCAATTTTGCTTATGTGACATCTA 59.607 33.333 0.00 0.00 0.00 1.98
3145 3230 6.209192 TCACCAATTTTGCTTATGTGACATCT 59.791 34.615 0.00 0.00 0.00 2.90
3146 3231 6.389091 TCACCAATTTTGCTTATGTGACATC 58.611 36.000 0.00 0.00 0.00 3.06
3147 3232 6.343716 TCACCAATTTTGCTTATGTGACAT 57.656 33.333 2.65 2.65 0.00 3.06
3148 3233 5.781210 TCACCAATTTTGCTTATGTGACA 57.219 34.783 0.00 0.00 0.00 3.58
3149 3234 6.089820 CACATCACCAATTTTGCTTATGTGAC 59.910 38.462 16.71 0.00 39.47 3.67
3150 3235 6.157904 CACATCACCAATTTTGCTTATGTGA 58.842 36.000 16.71 10.74 39.47 3.58
3151 3236 5.349270 CCACATCACCAATTTTGCTTATGTG 59.651 40.000 15.68 15.68 38.31 3.21
3152 3237 5.481105 CCACATCACCAATTTTGCTTATGT 58.519 37.500 0.00 0.00 0.00 2.29
3153 3238 4.330620 GCCACATCACCAATTTTGCTTATG 59.669 41.667 0.00 0.00 0.00 1.90
3154 3239 4.020396 TGCCACATCACCAATTTTGCTTAT 60.020 37.500 0.00 0.00 0.00 1.73
3155 3240 3.323115 TGCCACATCACCAATTTTGCTTA 59.677 39.130 0.00 0.00 0.00 3.09
3156 3241 2.104451 TGCCACATCACCAATTTTGCTT 59.896 40.909 0.00 0.00 0.00 3.91
3157 3242 1.693062 TGCCACATCACCAATTTTGCT 59.307 42.857 0.00 0.00 0.00 3.91
3158 3243 2.166821 TGCCACATCACCAATTTTGC 57.833 45.000 0.00 0.00 0.00 3.68
3159 3244 3.731089 ACTTGCCACATCACCAATTTTG 58.269 40.909 0.00 0.00 0.00 2.44
3160 3245 4.588528 ACTACTTGCCACATCACCAATTTT 59.411 37.500 0.00 0.00 0.00 1.82
3161 3246 4.151883 ACTACTTGCCACATCACCAATTT 58.848 39.130 0.00 0.00 0.00 1.82
3162 3247 3.766545 ACTACTTGCCACATCACCAATT 58.233 40.909 0.00 0.00 0.00 2.32
3163 3248 3.439857 ACTACTTGCCACATCACCAAT 57.560 42.857 0.00 0.00 0.00 3.16
3164 3249 2.949177 ACTACTTGCCACATCACCAA 57.051 45.000 0.00 0.00 0.00 3.67
3165 3250 2.949177 AACTACTTGCCACATCACCA 57.051 45.000 0.00 0.00 0.00 4.17
3166 3251 4.941263 TCATTAACTACTTGCCACATCACC 59.059 41.667 0.00 0.00 0.00 4.02
3167 3252 5.065218 CCTCATTAACTACTTGCCACATCAC 59.935 44.000 0.00 0.00 0.00 3.06
3168 3253 5.045942 TCCTCATTAACTACTTGCCACATCA 60.046 40.000 0.00 0.00 0.00 3.07
3169 3254 5.428253 TCCTCATTAACTACTTGCCACATC 58.572 41.667 0.00 0.00 0.00 3.06
3170 3255 5.189736 TCTCCTCATTAACTACTTGCCACAT 59.810 40.000 0.00 0.00 0.00 3.21
3171 3256 4.530553 TCTCCTCATTAACTACTTGCCACA 59.469 41.667 0.00 0.00 0.00 4.17
3172 3257 5.086104 TCTCCTCATTAACTACTTGCCAC 57.914 43.478 0.00 0.00 0.00 5.01
3173 3258 5.023452 TCTCTCCTCATTAACTACTTGCCA 58.977 41.667 0.00 0.00 0.00 4.92
3174 3259 5.452636 CCTCTCTCCTCATTAACTACTTGCC 60.453 48.000 0.00 0.00 0.00 4.52
3175 3260 5.596845 CCTCTCTCCTCATTAACTACTTGC 58.403 45.833 0.00 0.00 0.00 4.01
3176 3261 5.127845 TGCCTCTCTCCTCATTAACTACTTG 59.872 44.000 0.00 0.00 0.00 3.16
3177 3262 5.273208 TGCCTCTCTCCTCATTAACTACTT 58.727 41.667 0.00 0.00 0.00 2.24
3178 3263 4.873010 TGCCTCTCTCCTCATTAACTACT 58.127 43.478 0.00 0.00 0.00 2.57
3179 3264 5.599999 TTGCCTCTCTCCTCATTAACTAC 57.400 43.478 0.00 0.00 0.00 2.73
3180 3265 6.814954 ATTTGCCTCTCTCCTCATTAACTA 57.185 37.500 0.00 0.00 0.00 2.24
3181 3266 5.707066 ATTTGCCTCTCTCCTCATTAACT 57.293 39.130 0.00 0.00 0.00 2.24
3182 3267 6.821388 TCTATTTGCCTCTCTCCTCATTAAC 58.179 40.000 0.00 0.00 0.00 2.01
3183 3268 6.613271 ACTCTATTTGCCTCTCTCCTCATTAA 59.387 38.462 0.00 0.00 0.00 1.40
3184 3269 6.139671 ACTCTATTTGCCTCTCTCCTCATTA 58.860 40.000 0.00 0.00 0.00 1.90
3185 3270 4.968080 ACTCTATTTGCCTCTCTCCTCATT 59.032 41.667 0.00 0.00 0.00 2.57
3186 3271 4.555689 ACTCTATTTGCCTCTCTCCTCAT 58.444 43.478 0.00 0.00 0.00 2.90
3187 3272 3.987745 ACTCTATTTGCCTCTCTCCTCA 58.012 45.455 0.00 0.00 0.00 3.86
3188 3273 5.361285 TGTTACTCTATTTGCCTCTCTCCTC 59.639 44.000 0.00 0.00 0.00 3.71
3189 3274 5.128008 GTGTTACTCTATTTGCCTCTCTCCT 59.872 44.000 0.00 0.00 0.00 3.69
3190 3275 5.105310 TGTGTTACTCTATTTGCCTCTCTCC 60.105 44.000 0.00 0.00 0.00 3.71
3191 3276 5.967088 TGTGTTACTCTATTTGCCTCTCTC 58.033 41.667 0.00 0.00 0.00 3.20
3192 3277 6.360370 TTGTGTTACTCTATTTGCCTCTCT 57.640 37.500 0.00 0.00 0.00 3.10
3193 3278 8.768955 CATATTGTGTTACTCTATTTGCCTCTC 58.231 37.037 0.00 0.00 0.00 3.20
3194 3279 8.267894 ACATATTGTGTTACTCTATTTGCCTCT 58.732 33.333 1.26 0.00 38.01 3.69
3195 3280 8.438676 ACATATTGTGTTACTCTATTTGCCTC 57.561 34.615 1.26 0.00 38.01 4.70
3219 3304 3.311596 GGAAACCGCTATGTGATGGTAAC 59.688 47.826 0.00 0.00 33.45 2.50
3220 3305 3.055021 TGGAAACCGCTATGTGATGGTAA 60.055 43.478 0.00 0.00 33.45 2.85
3221 3306 2.502130 TGGAAACCGCTATGTGATGGTA 59.498 45.455 0.00 0.00 33.45 3.25
3222 3307 1.280710 TGGAAACCGCTATGTGATGGT 59.719 47.619 0.00 0.00 35.90 3.55
3223 3308 2.036958 TGGAAACCGCTATGTGATGG 57.963 50.000 0.00 0.00 0.00 3.51
3224 3309 3.793129 GCATTGGAAACCGCTATGTGATG 60.793 47.826 0.00 0.00 0.00 3.07
3225 3310 2.358898 GCATTGGAAACCGCTATGTGAT 59.641 45.455 0.00 0.00 0.00 3.06
3226 3311 1.742831 GCATTGGAAACCGCTATGTGA 59.257 47.619 0.00 0.00 0.00 3.58
3227 3312 1.472082 TGCATTGGAAACCGCTATGTG 59.528 47.619 0.00 0.00 0.00 3.21
3228 3313 1.832883 TGCATTGGAAACCGCTATGT 58.167 45.000 0.00 0.00 0.00 2.29
3229 3314 4.566545 TTATGCATTGGAAACCGCTATG 57.433 40.909 3.54 0.00 0.00 2.23
3230 3315 4.826733 TCATTATGCATTGGAAACCGCTAT 59.173 37.500 3.54 0.00 0.00 2.97
3231 3316 4.203226 TCATTATGCATTGGAAACCGCTA 58.797 39.130 3.54 0.00 0.00 4.26
3232 3317 3.023119 TCATTATGCATTGGAAACCGCT 58.977 40.909 3.54 0.00 0.00 5.52
3233 3318 3.181487 ACTCATTATGCATTGGAAACCGC 60.181 43.478 3.54 0.00 0.00 5.68
3234 3319 4.336433 AGACTCATTATGCATTGGAAACCG 59.664 41.667 3.54 0.00 0.00 4.44
3235 3320 5.841957 AGACTCATTATGCATTGGAAACC 57.158 39.130 3.54 0.00 0.00 3.27
3236 3321 7.320443 TGTAGACTCATTATGCATTGGAAAC 57.680 36.000 3.54 0.00 0.00 2.78
3237 3322 7.936496 TTGTAGACTCATTATGCATTGGAAA 57.064 32.000 3.54 0.00 0.00 3.13
3238 3323 7.611467 ACTTTGTAGACTCATTATGCATTGGAA 59.389 33.333 3.54 0.00 0.00 3.53
3239 3324 7.112122 ACTTTGTAGACTCATTATGCATTGGA 58.888 34.615 3.54 0.00 0.00 3.53
3240 3325 7.325660 ACTTTGTAGACTCATTATGCATTGG 57.674 36.000 3.54 0.00 0.00 3.16
3284 3369 5.128171 TGGGTAGTGTCATAGATGTGGTAAC 59.872 44.000 0.00 0.00 0.00 2.50
3285 3370 5.128171 GTGGGTAGTGTCATAGATGTGGTAA 59.872 44.000 0.00 0.00 0.00 2.85
3286 3371 4.647853 GTGGGTAGTGTCATAGATGTGGTA 59.352 45.833 0.00 0.00 0.00 3.25
3287 3372 3.451178 GTGGGTAGTGTCATAGATGTGGT 59.549 47.826 0.00 0.00 0.00 4.16
3288 3373 3.706594 AGTGGGTAGTGTCATAGATGTGG 59.293 47.826 0.00 0.00 0.00 4.17
3289 3374 6.656632 ATAGTGGGTAGTGTCATAGATGTG 57.343 41.667 0.00 0.00 0.00 3.21
3290 3375 8.777578 TTTATAGTGGGTAGTGTCATAGATGT 57.222 34.615 0.00 0.00 0.00 3.06
3291 3376 8.307483 CCTTTATAGTGGGTAGTGTCATAGATG 58.693 40.741 0.00 0.00 0.00 2.90
3292 3377 8.011290 ACCTTTATAGTGGGTAGTGTCATAGAT 58.989 37.037 0.00 0.00 0.00 1.98
3293 3378 7.359849 ACCTTTATAGTGGGTAGTGTCATAGA 58.640 38.462 0.00 0.00 0.00 1.98
3294 3379 7.598759 ACCTTTATAGTGGGTAGTGTCATAG 57.401 40.000 0.00 0.00 0.00 2.23
3295 3380 8.701908 CTACCTTTATAGTGGGTAGTGTCATA 57.298 38.462 14.51 0.00 44.30 2.15
3296 3381 7.598759 CTACCTTTATAGTGGGTAGTGTCAT 57.401 40.000 14.51 0.00 44.30 3.06
3304 3389 9.140874 GTCTATGTTACTACCTTTATAGTGGGT 57.859 37.037 0.00 0.00 36.09 4.51
3305 3390 9.364653 AGTCTATGTTACTACCTTTATAGTGGG 57.635 37.037 0.00 0.00 36.09 4.61
3349 3434 8.910944 TCACAGTGAAAAGTAACTTAGACTAGT 58.089 33.333 0.00 0.00 0.00 2.57
3350 3435 9.182933 GTCACAGTGAAAAGTAACTTAGACTAG 57.817 37.037 4.32 0.00 30.55 2.57
3351 3436 8.139989 GGTCACAGTGAAAAGTAACTTAGACTA 58.860 37.037 4.32 0.00 32.36 2.59
3352 3437 6.985059 GGTCACAGTGAAAAGTAACTTAGACT 59.015 38.462 4.32 0.00 32.36 3.24
3353 3438 6.759827 TGGTCACAGTGAAAAGTAACTTAGAC 59.240 38.462 4.32 0.00 31.57 2.59
3354 3439 6.880484 TGGTCACAGTGAAAAGTAACTTAGA 58.120 36.000 4.32 0.00 0.00 2.10
3355 3440 6.292919 GCTGGTCACAGTGAAAAGTAACTTAG 60.293 42.308 4.32 0.00 46.62 2.18
3356 3441 5.526111 GCTGGTCACAGTGAAAAGTAACTTA 59.474 40.000 4.32 0.00 46.62 2.24
3357 3442 4.335594 GCTGGTCACAGTGAAAAGTAACTT 59.664 41.667 4.32 0.00 46.62 2.66
3358 3443 3.877508 GCTGGTCACAGTGAAAAGTAACT 59.122 43.478 4.32 0.00 46.62 2.24
3359 3444 3.003378 GGCTGGTCACAGTGAAAAGTAAC 59.997 47.826 4.32 0.00 46.62 2.50
3360 3445 3.118038 AGGCTGGTCACAGTGAAAAGTAA 60.118 43.478 4.32 0.00 46.62 2.24
3361 3446 2.438021 AGGCTGGTCACAGTGAAAAGTA 59.562 45.455 4.32 0.00 46.62 2.24
3362 3447 1.212935 AGGCTGGTCACAGTGAAAAGT 59.787 47.619 4.32 0.00 46.62 2.66
3363 3448 1.972872 AGGCTGGTCACAGTGAAAAG 58.027 50.000 4.32 7.08 46.62 2.27
3364 3449 3.211045 GTTAGGCTGGTCACAGTGAAAA 58.789 45.455 4.32 0.00 46.62 2.29
3365 3450 2.171659 TGTTAGGCTGGTCACAGTGAAA 59.828 45.455 4.32 0.00 46.62 2.69
3366 3451 1.765904 TGTTAGGCTGGTCACAGTGAA 59.234 47.619 4.32 0.00 46.62 3.18
3367 3452 1.419381 TGTTAGGCTGGTCACAGTGA 58.581 50.000 0.00 0.00 46.62 3.41
3368 3453 2.079158 CATGTTAGGCTGGTCACAGTG 58.921 52.381 0.00 0.00 46.62 3.66
3369 3454 1.977854 TCATGTTAGGCTGGTCACAGT 59.022 47.619 0.00 0.00 46.62 3.55
3371 3456 1.696884 TGTCATGTTAGGCTGGTCACA 59.303 47.619 0.00 0.00 0.00 3.58
3372 3457 2.472695 TGTCATGTTAGGCTGGTCAC 57.527 50.000 0.00 0.00 0.00 3.67
3373 3458 2.940971 GCATGTCATGTTAGGCTGGTCA 60.941 50.000 14.26 0.00 0.00 4.02
3374 3459 1.672881 GCATGTCATGTTAGGCTGGTC 59.327 52.381 14.26 0.00 0.00 4.02
3375 3460 1.683011 GGCATGTCATGTTAGGCTGGT 60.683 52.381 14.26 0.00 0.00 4.00
3376 3461 1.027357 GGCATGTCATGTTAGGCTGG 58.973 55.000 14.26 0.00 0.00 4.85
3377 3462 1.945394 GAGGCATGTCATGTTAGGCTG 59.055 52.381 14.26 0.00 35.07 4.85
3378 3463 1.133976 GGAGGCATGTCATGTTAGGCT 60.134 52.381 14.26 5.73 37.85 4.58
3379 3464 1.312815 GGAGGCATGTCATGTTAGGC 58.687 55.000 14.26 0.73 0.00 3.93
3380 3465 1.586422 CGGAGGCATGTCATGTTAGG 58.414 55.000 14.26 0.00 0.00 2.69
3381 3466 1.586422 CCGGAGGCATGTCATGTTAG 58.414 55.000 14.26 2.62 46.14 2.34
3382 3467 3.778619 CCGGAGGCATGTCATGTTA 57.221 52.632 14.26 0.00 46.14 2.41
3383 3468 4.643795 CCGGAGGCATGTCATGTT 57.356 55.556 14.26 3.42 46.14 2.71
3399 3484 1.677576 TGCGATTCCATGCAATCTTCC 59.322 47.619 7.74 0.00 38.34 3.46
3424 3513 0.321475 AGAGCTTCTGTGCTTGAGGC 60.321 55.000 0.00 0.00 44.17 4.70
3463 3555 0.313987 ACGACGTGCTCACAGATGAA 59.686 50.000 0.00 0.00 33.30 2.57
3754 3846 2.554893 AGGCAAAGTATTCGCGGAAAAA 59.445 40.909 6.13 0.00 0.00 1.94
3755 3847 2.156098 AGGCAAAGTATTCGCGGAAAA 58.844 42.857 6.13 0.00 0.00 2.29
3756 3848 1.816074 AGGCAAAGTATTCGCGGAAA 58.184 45.000 6.13 0.00 0.00 3.13
3757 3849 2.676632 TAGGCAAAGTATTCGCGGAA 57.323 45.000 6.13 0.00 0.00 4.30
3758 3850 2.101750 TGATAGGCAAAGTATTCGCGGA 59.898 45.455 6.13 0.00 0.00 5.54
3759 3851 2.479837 TGATAGGCAAAGTATTCGCGG 58.520 47.619 6.13 0.00 0.00 6.46
3760 3852 4.457810 CAATGATAGGCAAAGTATTCGCG 58.542 43.478 0.00 0.00 0.00 5.87
3761 3853 4.222114 GCAATGATAGGCAAAGTATTCGC 58.778 43.478 0.00 0.00 0.00 4.70
3762 3854 5.422666 TGCAATGATAGGCAAAGTATTCG 57.577 39.130 0.00 0.00 37.03 3.34
3763 3855 7.428020 TCAATGCAATGATAGGCAAAGTATTC 58.572 34.615 0.00 0.00 44.20 1.75
3764 3856 7.350744 TCAATGCAATGATAGGCAAAGTATT 57.649 32.000 0.00 0.00 44.20 1.89
3765 3857 6.964807 TCAATGCAATGATAGGCAAAGTAT 57.035 33.333 0.00 0.00 44.20 2.12
3766 3858 6.964807 ATCAATGCAATGATAGGCAAAGTA 57.035 33.333 15.68 0.00 44.20 2.24
3767 3859 5.864418 ATCAATGCAATGATAGGCAAAGT 57.136 34.783 15.68 0.00 44.20 2.66
3775 3867 5.999600 CACTCCACCTATCAATGCAATGATA 59.000 40.000 20.58 20.58 40.44 2.15
3776 3868 4.825634 CACTCCACCTATCAATGCAATGAT 59.174 41.667 20.55 20.55 42.52 2.45
3777 3869 4.080413 TCACTCCACCTATCAATGCAATGA 60.080 41.667 6.97 6.97 0.00 2.57
3778 3870 4.201657 TCACTCCACCTATCAATGCAATG 58.798 43.478 0.00 0.00 0.00 2.82
3779 3871 4.508551 TCACTCCACCTATCAATGCAAT 57.491 40.909 0.00 0.00 0.00 3.56
3780 3872 3.998913 TCACTCCACCTATCAATGCAA 57.001 42.857 0.00 0.00 0.00 4.08
3781 3873 3.998913 TTCACTCCACCTATCAATGCA 57.001 42.857 0.00 0.00 0.00 3.96
3782 3874 5.357878 TGAATTTCACTCCACCTATCAATGC 59.642 40.000 0.00 0.00 0.00 3.56
3783 3875 7.578310 ATGAATTTCACTCCACCTATCAATG 57.422 36.000 0.15 0.00 0.00 2.82
3784 3876 9.699410 TTTATGAATTTCACTCCACCTATCAAT 57.301 29.630 0.15 0.00 0.00 2.57
3785 3877 9.699410 ATTTATGAATTTCACTCCACCTATCAA 57.301 29.630 0.15 0.00 0.00 2.57
3786 3878 9.699410 AATTTATGAATTTCACTCCACCTATCA 57.301 29.630 0.15 0.00 31.48 2.15
3787 3879 9.956720 CAATTTATGAATTTCACTCCACCTATC 57.043 33.333 0.15 0.00 33.25 2.08
3788 3880 8.917088 CCAATTTATGAATTTCACTCCACCTAT 58.083 33.333 0.15 0.00 33.25 2.57
3789 3881 7.893302 ACCAATTTATGAATTTCACTCCACCTA 59.107 33.333 0.15 0.00 33.25 3.08
3790 3882 6.725834 ACCAATTTATGAATTTCACTCCACCT 59.274 34.615 0.15 0.00 33.25 4.00
3791 3883 6.935167 ACCAATTTATGAATTTCACTCCACC 58.065 36.000 0.15 0.00 33.25 4.61
3808 3900 9.863845 CCGTTTAAACCATTCTATAACCAATTT 57.136 29.630 12.66 0.00 0.00 1.82
3809 3901 9.245481 TCCGTTTAAACCATTCTATAACCAATT 57.755 29.630 12.66 0.00 0.00 2.32
3810 3902 8.680001 GTCCGTTTAAACCATTCTATAACCAAT 58.320 33.333 12.66 0.00 0.00 3.16
3811 3903 7.121020 GGTCCGTTTAAACCATTCTATAACCAA 59.879 37.037 12.66 0.00 35.53 3.67
3812 3904 6.598850 GGTCCGTTTAAACCATTCTATAACCA 59.401 38.462 12.66 0.00 35.53 3.67
3813 3905 6.238184 CGGTCCGTTTAAACCATTCTATAACC 60.238 42.308 12.66 6.29 35.13 2.85
3814 3906 6.238184 CCGGTCCGTTTAAACCATTCTATAAC 60.238 42.308 11.06 0.00 35.13 1.89
3815 3907 5.816777 CCGGTCCGTTTAAACCATTCTATAA 59.183 40.000 11.06 0.00 35.13 0.98
3816 3908 5.358922 CCGGTCCGTTTAAACCATTCTATA 58.641 41.667 11.06 0.00 35.13 1.31
3817 3909 4.193865 CCGGTCCGTTTAAACCATTCTAT 58.806 43.478 11.06 0.00 35.13 1.98
3818 3910 3.598299 CCGGTCCGTTTAAACCATTCTA 58.402 45.455 11.06 0.00 35.13 2.10
3819 3911 2.429478 CCGGTCCGTTTAAACCATTCT 58.571 47.619 11.06 0.00 35.13 2.40
3820 3912 1.135603 GCCGGTCCGTTTAAACCATTC 60.136 52.381 11.06 1.65 35.13 2.67
3821 3913 0.883153 GCCGGTCCGTTTAAACCATT 59.117 50.000 11.06 0.00 35.13 3.16
3822 3914 0.961857 GGCCGGTCCGTTTAAACCAT 60.962 55.000 11.06 0.00 35.13 3.55
3823 3915 1.600356 GGCCGGTCCGTTTAAACCA 60.600 57.895 11.06 0.00 35.13 3.67
3824 3916 1.579964 CTGGCCGGTCCGTTTAAACC 61.580 60.000 11.06 0.00 37.80 3.27
3825 3917 1.871077 CTGGCCGGTCCGTTTAAAC 59.129 57.895 11.06 8.35 37.80 2.01
3826 3918 1.967494 GCTGGCCGGTCCGTTTAAA 60.967 57.895 14.55 0.00 37.80 1.52
3827 3919 1.543065 TAGCTGGCCGGTCCGTTTAA 61.543 55.000 14.55 0.00 37.80 1.52
3828 3920 1.952102 CTAGCTGGCCGGTCCGTTTA 61.952 60.000 14.55 0.00 37.80 2.01
3829 3921 3.310860 CTAGCTGGCCGGTCCGTTT 62.311 63.158 14.55 0.00 37.80 3.60
3830 3922 3.771160 CTAGCTGGCCGGTCCGTT 61.771 66.667 14.55 0.00 37.80 4.44
3833 3925 3.866582 ATGCTAGCTGGCCGGTCC 61.867 66.667 20.33 5.67 0.00 4.46
3834 3926 2.028125 TACATGCTAGCTGGCCGGTC 62.028 60.000 20.33 0.00 0.00 4.79
3835 3927 2.063979 TACATGCTAGCTGGCCGGT 61.064 57.895 20.33 18.63 0.00 5.28
3836 3928 1.595382 GTACATGCTAGCTGGCCGG 60.595 63.158 20.33 13.67 0.00 6.13
3837 3929 0.598680 GAGTACATGCTAGCTGGCCG 60.599 60.000 20.33 13.07 0.00 6.13
3838 3930 0.250081 GGAGTACATGCTAGCTGGCC 60.250 60.000 20.33 3.20 0.00 5.36
3839 3931 0.250081 GGGAGTACATGCTAGCTGGC 60.250 60.000 16.23 16.23 0.00 4.85
3840 3932 1.418334 AGGGAGTACATGCTAGCTGG 58.582 55.000 17.23 10.37 0.00 4.85
3841 3933 2.544694 CGAAGGGAGTACATGCTAGCTG 60.545 54.545 17.23 13.70 0.00 4.24
3842 3934 1.683917 CGAAGGGAGTACATGCTAGCT 59.316 52.381 17.23 0.00 0.00 3.32
3843 3935 1.409427 ACGAAGGGAGTACATGCTAGC 59.591 52.381 8.10 8.10 0.00 3.42
3844 3936 2.952978 AGACGAAGGGAGTACATGCTAG 59.047 50.000 0.00 0.00 0.00 3.42
3845 3937 3.014304 AGACGAAGGGAGTACATGCTA 57.986 47.619 0.00 0.00 0.00 3.49
3846 3938 1.853963 AGACGAAGGGAGTACATGCT 58.146 50.000 0.00 0.00 0.00 3.79
3847 3939 2.950309 TCTAGACGAAGGGAGTACATGC 59.050 50.000 0.00 0.00 0.00 4.06
3848 3940 4.822350 TCATCTAGACGAAGGGAGTACATG 59.178 45.833 0.00 0.00 0.00 3.21
3849 3941 5.050126 TCATCTAGACGAAGGGAGTACAT 57.950 43.478 0.00 0.00 0.00 2.29
3850 3942 4.080469 ACTCATCTAGACGAAGGGAGTACA 60.080 45.833 0.00 0.00 33.01 2.90
3851 3943 4.453751 ACTCATCTAGACGAAGGGAGTAC 58.546 47.826 0.00 0.00 33.01 2.73
3852 3944 4.774660 ACTCATCTAGACGAAGGGAGTA 57.225 45.455 0.00 0.00 33.01 2.59
3853 3945 3.655615 ACTCATCTAGACGAAGGGAGT 57.344 47.619 0.00 0.00 31.19 3.85
3854 3946 5.127491 ACTTACTCATCTAGACGAAGGGAG 58.873 45.833 0.00 0.00 0.00 4.30
3855 3947 5.113446 ACTTACTCATCTAGACGAAGGGA 57.887 43.478 0.00 0.00 0.00 4.20
3856 3948 4.882427 TGACTTACTCATCTAGACGAAGGG 59.118 45.833 0.00 0.00 0.00 3.95
3857 3949 6.627395 ATGACTTACTCATCTAGACGAAGG 57.373 41.667 0.00 0.00 34.07 3.46
3868 3960 6.440647 TGACCAACCTAAGATGACTTACTCAT 59.559 38.462 0.00 0.00 42.84 2.90
3869 3961 5.778241 TGACCAACCTAAGATGACTTACTCA 59.222 40.000 0.00 0.00 37.53 3.41
3870 3962 6.282199 TGACCAACCTAAGATGACTTACTC 57.718 41.667 0.00 0.00 37.53 2.59
3871 3963 6.875972 ATGACCAACCTAAGATGACTTACT 57.124 37.500 0.00 0.00 37.53 2.24
3872 3964 7.707035 CACTATGACCAACCTAAGATGACTTAC 59.293 40.741 0.00 0.00 37.53 2.34
3873 3965 7.147724 CCACTATGACCAACCTAAGATGACTTA 60.148 40.741 0.00 0.00 37.53 2.24
3874 3966 6.352222 CCACTATGACCAACCTAAGATGACTT 60.352 42.308 0.00 0.00 39.81 3.01
3875 3967 5.129485 CCACTATGACCAACCTAAGATGACT 59.871 44.000 0.00 0.00 0.00 3.41
3876 3968 5.360591 CCACTATGACCAACCTAAGATGAC 58.639 45.833 0.00 0.00 0.00 3.06
3877 3969 4.408921 CCCACTATGACCAACCTAAGATGA 59.591 45.833 0.00 0.00 0.00 2.92
3878 3970 4.408921 TCCCACTATGACCAACCTAAGATG 59.591 45.833 0.00 0.00 0.00 2.90
3879 3971 4.631234 TCCCACTATGACCAACCTAAGAT 58.369 43.478 0.00 0.00 0.00 2.40
3880 3972 4.030913 CTCCCACTATGACCAACCTAAGA 58.969 47.826 0.00 0.00 0.00 2.10
3881 3973 3.775316 ACTCCCACTATGACCAACCTAAG 59.225 47.826 0.00 0.00 0.00 2.18
3882 3974 3.798515 ACTCCCACTATGACCAACCTAA 58.201 45.455 0.00 0.00 0.00 2.69
3883 3975 3.484953 ACTCCCACTATGACCAACCTA 57.515 47.619 0.00 0.00 0.00 3.08
3884 3976 2.344093 ACTCCCACTATGACCAACCT 57.656 50.000 0.00 0.00 0.00 3.50
3885 3977 3.518303 AGTTACTCCCACTATGACCAACC 59.482 47.826 0.00 0.00 0.00 3.77
3886 3978 4.820894 AGTTACTCCCACTATGACCAAC 57.179 45.455 0.00 0.00 0.00 3.77
3887 3979 5.105064 GCTAAGTTACTCCCACTATGACCAA 60.105 44.000 0.00 0.00 0.00 3.67
3888 3980 4.404715 GCTAAGTTACTCCCACTATGACCA 59.595 45.833 0.00 0.00 0.00 4.02
3889 3981 4.404715 TGCTAAGTTACTCCCACTATGACC 59.595 45.833 0.00 0.00 0.00 4.02
3890 3982 5.593679 TGCTAAGTTACTCCCACTATGAC 57.406 43.478 0.00 0.00 0.00 3.06
3891 3983 5.720041 ACTTGCTAAGTTACTCCCACTATGA 59.280 40.000 0.00 0.00 39.04 2.15
3892 3984 5.978814 ACTTGCTAAGTTACTCCCACTATG 58.021 41.667 0.00 0.00 39.04 2.23
3893 3985 7.179694 TGTTACTTGCTAAGTTACTCCCACTAT 59.820 37.037 14.64 0.00 40.62 2.12
3894 3986 6.494491 TGTTACTTGCTAAGTTACTCCCACTA 59.506 38.462 14.64 0.00 40.62 2.74
3895 3987 5.306160 TGTTACTTGCTAAGTTACTCCCACT 59.694 40.000 14.64 0.00 40.62 4.00
3896 3988 5.544650 TGTTACTTGCTAAGTTACTCCCAC 58.455 41.667 14.64 0.00 40.62 4.61
3897 3989 5.811796 TGTTACTTGCTAAGTTACTCCCA 57.188 39.130 14.64 0.00 40.62 4.37


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.