Multiple sequence alignment - TraesCS2B01G363400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G363400 chr2B 100.000 3542 0 0 1 3542 517693707 517697248 0.000000e+00 6541
1 TraesCS2B01G363400 chr2B 91.421 373 22 7 1 367 625250208 625250576 1.470000e-138 503
2 TraesCS2B01G363400 chr2B 90.933 375 21 8 4 369 540750252 540749882 3.180000e-135 492
3 TraesCS2B01G363400 chr2B 90.617 373 25 7 1 367 688454205 688454573 1.480000e-133 486
4 TraesCS2B01G363400 chr2D 98.177 2852 41 3 367 3216 439965553 439962711 0.000000e+00 4968
5 TraesCS2B01G363400 chr2D 82.614 811 89 27 1872 2670 439971964 439972734 0.000000e+00 669
6 TraesCS2B01G363400 chr2D 85.658 509 43 11 1344 1840 439654959 439654469 3.150000e-140 508
7 TraesCS2B01G363400 chr2D 85.658 509 43 11 1344 1840 439971505 439971995 3.150000e-140 508
8 TraesCS2B01G363400 chr2D 76.988 830 129 31 999 1806 439969159 439968370 5.470000e-113 418
9 TraesCS2B01G363400 chr2D 81.800 489 55 19 2193 2670 439652241 439651776 2.580000e-101 379
10 TraesCS2B01G363400 chr2D 88.015 267 28 4 942 1208 439655222 439654960 2.650000e-81 313
11 TraesCS2B01G363400 chr2D 88.015 267 28 4 942 1208 439971242 439971504 2.650000e-81 313
12 TraesCS2B01G363400 chr2D 87.671 219 25 2 1875 2092 439654497 439654280 1.630000e-63 254
13 TraesCS2B01G363400 chr2D 79.870 308 56 4 1924 2228 439654829 439654525 1.660000e-53 220
14 TraesCS2B01G363400 chr2D 80.205 293 50 5 1924 2213 439971635 439971922 2.770000e-51 213
15 TraesCS2B01G363400 chr2D 92.647 136 7 1 1582 1714 439974441 439974576 3.610000e-45 193
16 TraesCS2B01G363400 chr4B 95.968 372 8 2 1 367 668878243 668877874 6.540000e-167 597
17 TraesCS2B01G363400 chr1B 94.370 373 11 4 1 367 145364929 145365297 6.640000e-157 564
18 TraesCS2B01G363400 chr1B 91.223 376 21 8 1 369 665814748 665815118 5.280000e-138 501
19 TraesCS2B01G363400 chr1B 90.716 377 23 8 1 369 615016181 615016553 3.180000e-135 492
20 TraesCS2B01G363400 chr6B 92.992 371 20 4 1 367 275923527 275923895 1.450000e-148 536
21 TraesCS2B01G363400 chr3B 90.642 374 23 8 1 367 177885547 177885179 1.480000e-133 486
22 TraesCS2B01G363400 chr2A 96.610 59 2 0 1747 1805 583074787 583074845 8.090000e-17 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G363400 chr2B 517693707 517697248 3541 False 6541.0 6541 100.0000 1 3542 1 chr2B.!!$F1 3541
1 TraesCS2B01G363400 chr2D 439962711 439969159 6448 True 2693.0 4968 87.5825 367 3216 2 chr2D.!!$R2 2849
2 TraesCS2B01G363400 chr2D 439971242 439974576 3334 False 379.2 669 85.8278 942 2670 5 chr2D.!!$F1 1728
3 TraesCS2B01G363400 chr2D 439651776 439655222 3446 True 334.8 508 84.6028 942 2670 5 chr2D.!!$R1 1728

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.039074 GACACCGCCGAGGATGATAG 60.039 60.0 3.89 0.0 45.00 2.08 F
30 31 0.319040 CGCCGAGGATGATAGTGGTG 60.319 60.0 0.00 0.0 0.00 4.17 F
361 362 0.389948 GTTCGGCGTCTGTTGGAGAT 60.390 55.0 6.85 0.0 31.63 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1483 4724 2.047179 GAACACCTCGACCCTGCC 60.047 66.667 0.00 0.00 0.00 4.85 R
1786 5030 4.150454 CTCCTCCTCCCCGAGCCT 62.150 72.222 0.00 0.00 0.00 4.58 R
2556 7754 0.962356 CAAGAAAGAGGCCATGGCGT 60.962 55.000 31.09 31.09 43.06 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.823330 GACGACACCGCCGAGGAT 61.823 66.667 3.89 0.00 45.00 3.24
21 22 4.129737 ACGACACCGCCGAGGATG 62.130 66.667 3.89 1.99 45.00 3.51
22 23 3.822192 CGACACCGCCGAGGATGA 61.822 66.667 3.89 0.00 45.00 2.92
23 24 2.815308 GACACCGCCGAGGATGAT 59.185 61.111 3.89 0.00 45.00 2.45
24 25 1.792118 CGACACCGCCGAGGATGATA 61.792 60.000 3.89 0.00 45.00 2.15
25 26 0.039074 GACACCGCCGAGGATGATAG 60.039 60.000 3.89 0.00 45.00 2.08
26 27 0.755698 ACACCGCCGAGGATGATAGT 60.756 55.000 3.89 0.00 45.00 2.12
28 29 1.290324 CCGCCGAGGATGATAGTGG 59.710 63.158 0.00 0.00 45.00 4.00
29 30 1.464376 CCGCCGAGGATGATAGTGGT 61.464 60.000 0.00 0.00 45.00 4.16
30 31 0.319040 CGCCGAGGATGATAGTGGTG 60.319 60.000 0.00 0.00 0.00 4.17
31 32 1.040646 GCCGAGGATGATAGTGGTGA 58.959 55.000 0.00 0.00 0.00 4.02
32 33 1.620819 GCCGAGGATGATAGTGGTGAT 59.379 52.381 0.00 0.00 0.00 3.06
33 34 2.611473 GCCGAGGATGATAGTGGTGATG 60.611 54.545 0.00 0.00 0.00 3.07
34 35 2.893489 CCGAGGATGATAGTGGTGATGA 59.107 50.000 0.00 0.00 0.00 2.92
35 36 3.513119 CCGAGGATGATAGTGGTGATGAT 59.487 47.826 0.00 0.00 0.00 2.45
36 37 4.492611 CGAGGATGATAGTGGTGATGATG 58.507 47.826 0.00 0.00 0.00 3.07
37 38 4.219288 CGAGGATGATAGTGGTGATGATGA 59.781 45.833 0.00 0.00 0.00 2.92
38 39 5.105432 CGAGGATGATAGTGGTGATGATGAT 60.105 44.000 0.00 0.00 0.00 2.45
41 42 6.047870 GGATGATAGTGGTGATGATGATAGC 58.952 44.000 0.00 0.00 0.00 2.97
42 43 5.064441 TGATAGTGGTGATGATGATAGCG 57.936 43.478 0.00 0.00 0.00 4.26
43 44 4.766891 TGATAGTGGTGATGATGATAGCGA 59.233 41.667 0.00 0.00 0.00 4.93
44 45 3.377346 AGTGGTGATGATGATAGCGAC 57.623 47.619 0.00 0.00 0.00 5.19
46 47 3.386078 AGTGGTGATGATGATAGCGACTT 59.614 43.478 0.00 0.00 0.00 3.01
47 48 4.584743 AGTGGTGATGATGATAGCGACTTA 59.415 41.667 0.00 0.00 0.00 2.24
48 49 4.920340 GTGGTGATGATGATAGCGACTTAG 59.080 45.833 0.00 0.00 0.00 2.18
49 50 4.827284 TGGTGATGATGATAGCGACTTAGA 59.173 41.667 0.00 0.00 0.00 2.10
50 51 5.048434 TGGTGATGATGATAGCGACTTAGAG 60.048 44.000 0.00 0.00 0.00 2.43
51 52 5.048364 GGTGATGATGATAGCGACTTAGAGT 60.048 44.000 0.00 0.00 0.00 3.24
52 53 6.149640 GGTGATGATGATAGCGACTTAGAGTA 59.850 42.308 0.00 0.00 0.00 2.59
53 54 7.240674 GTGATGATGATAGCGACTTAGAGTAG 58.759 42.308 0.00 0.00 0.00 2.57
54 55 6.937465 TGATGATGATAGCGACTTAGAGTAGT 59.063 38.462 0.00 0.00 0.00 2.73
55 56 7.445707 TGATGATGATAGCGACTTAGAGTAGTT 59.554 37.037 0.00 0.00 0.00 2.24
58 59 8.467598 TGATGATAGCGACTTAGAGTAGTTTTT 58.532 33.333 0.00 0.00 0.00 1.94
86 87 8.841444 AATGCAATCTATGTTTATCGTTTGTC 57.159 30.769 0.00 0.00 0.00 3.18
87 88 6.474364 TGCAATCTATGTTTATCGTTTGTCG 58.526 36.000 0.00 0.00 41.41 4.35
88 89 6.091577 TGCAATCTATGTTTATCGTTTGTCGT 59.908 34.615 0.00 0.00 40.80 4.34
89 90 6.959311 GCAATCTATGTTTATCGTTTGTCGTT 59.041 34.615 0.00 0.00 40.80 3.85
90 91 7.480542 GCAATCTATGTTTATCGTTTGTCGTTT 59.519 33.333 0.00 0.00 40.80 3.60
91 92 9.325150 CAATCTATGTTTATCGTTTGTCGTTTT 57.675 29.630 0.00 0.00 40.80 2.43
92 93 9.887406 AATCTATGTTTATCGTTTGTCGTTTTT 57.113 25.926 0.00 0.00 40.80 1.94
103 104 8.336498 TCGTTTGTCGTTTTTATTTTATGCAA 57.664 26.923 0.00 0.00 40.80 4.08
105 106 9.233960 CGTTTGTCGTTTTTATTTTATGCAATC 57.766 29.630 0.00 0.00 34.52 2.67
121 122 8.669946 TTATGCAATCTATGTTTCGGATGTAA 57.330 30.769 0.00 0.00 0.00 2.41
122 123 6.993786 TGCAATCTATGTTTCGGATGTAAA 57.006 33.333 0.00 0.00 0.00 2.01
123 124 7.384439 TGCAATCTATGTTTCGGATGTAAAA 57.616 32.000 0.00 0.00 0.00 1.52
124 125 7.995289 TGCAATCTATGTTTCGGATGTAAAAT 58.005 30.769 0.00 0.00 0.00 1.82
126 127 9.382244 GCAATCTATGTTTCGGATGTAAAATAC 57.618 33.333 0.00 0.00 0.00 1.89
127 128 9.878599 CAATCTATGTTTCGGATGTAAAATACC 57.121 33.333 0.00 0.00 0.00 2.73
129 130 9.847224 ATCTATGTTTCGGATGTAAAATACCTT 57.153 29.630 0.00 0.00 0.00 3.50
130 131 9.675464 TCTATGTTTCGGATGTAAAATACCTTT 57.325 29.630 0.00 0.00 0.00 3.11
131 132 9.716507 CTATGTTTCGGATGTAAAATACCTTTG 57.283 33.333 0.00 0.00 0.00 2.77
132 133 7.513371 TGTTTCGGATGTAAAATACCTTTGT 57.487 32.000 0.00 0.00 0.00 2.83
133 134 8.618702 TGTTTCGGATGTAAAATACCTTTGTA 57.381 30.769 0.00 0.00 0.00 2.41
134 135 9.233649 TGTTTCGGATGTAAAATACCTTTGTAT 57.766 29.630 0.00 0.00 39.39 2.29
135 136 9.712359 GTTTCGGATGTAAAATACCTTTGTATC 57.288 33.333 0.00 0.00 36.65 2.24
138 139 7.765360 TCGGATGTAAAATACCTTTGTATCGTT 59.235 33.333 0.00 0.00 36.65 3.85
139 140 8.392612 CGGATGTAAAATACCTTTGTATCGTTT 58.607 33.333 0.00 0.00 36.65 3.60
149 150 9.772973 ATACCTTTGTATCGTTTAATCTATGCA 57.227 29.630 0.00 0.00 31.99 3.96
150 151 8.500753 ACCTTTGTATCGTTTAATCTATGCAA 57.499 30.769 0.00 0.00 0.00 4.08
151 152 9.120538 ACCTTTGTATCGTTTAATCTATGCAAT 57.879 29.630 0.00 0.00 0.00 3.56
152 153 9.599322 CCTTTGTATCGTTTAATCTATGCAATC 57.401 33.333 0.00 0.00 0.00 2.67
208 209 4.621068 AATGCATACATTTCTGGTCACG 57.379 40.909 0.00 0.00 44.21 4.35
209 210 1.737236 TGCATACATTTCTGGTCACGC 59.263 47.619 0.00 0.00 0.00 5.34
210 211 1.267532 GCATACATTTCTGGTCACGCG 60.268 52.381 3.53 3.53 0.00 6.01
211 212 1.006832 ATACATTTCTGGTCACGCGC 58.993 50.000 5.73 0.00 0.00 6.86
212 213 1.348538 TACATTTCTGGTCACGCGCG 61.349 55.000 30.96 30.96 0.00 6.86
220 221 4.741781 GTCACGCGCGCTGCATTT 62.742 61.111 32.58 5.07 46.97 2.32
221 222 4.024143 TCACGCGCGCTGCATTTT 62.024 55.556 32.58 4.13 46.97 1.82
222 223 2.202285 CACGCGCGCTGCATTTTA 60.202 55.556 32.58 0.00 46.97 1.52
224 225 3.307262 CGCGCGCTGCATTTTAGC 61.307 61.111 30.48 6.56 46.97 3.09
229 230 2.100991 GCTGCATTTTAGCGCGCT 59.899 55.556 38.01 38.01 37.31 5.92
231 232 2.202466 TGCATTTTAGCGCGCTGC 60.202 55.556 41.85 34.63 46.98 5.25
261 262 3.526536 CGCGCGTTGCATTTCAGC 61.527 61.111 24.19 0.00 46.97 4.26
267 268 3.364441 TTGCATTTCAGCGCGGCT 61.364 55.556 8.83 2.05 40.77 5.52
326 327 4.445545 GCGCGCGCTAAAGCTGTT 62.446 61.111 44.38 0.00 39.32 3.16
327 328 2.173382 CGCGCGCTAAAGCTGTTT 59.827 55.556 30.48 0.00 39.32 2.83
328 329 1.440353 CGCGCGCTAAAGCTGTTTT 60.440 52.632 30.48 0.00 39.32 2.43
329 330 0.996727 CGCGCGCTAAAGCTGTTTTT 60.997 50.000 30.48 0.00 39.32 1.94
358 359 2.355363 CGTTCGGCGTCTGTTGGA 60.355 61.111 6.85 0.00 35.54 3.53
359 360 2.372690 CGTTCGGCGTCTGTTGGAG 61.373 63.158 6.85 0.00 35.54 3.86
360 361 1.006571 GTTCGGCGTCTGTTGGAGA 60.007 57.895 6.85 0.00 0.00 3.71
361 362 0.389948 GTTCGGCGTCTGTTGGAGAT 60.390 55.000 6.85 0.00 31.63 2.75
367 368 2.376808 CGTCTGTTGGAGATGCTCTT 57.623 50.000 0.00 0.00 30.78 2.85
368 369 3.510388 CGTCTGTTGGAGATGCTCTTA 57.490 47.619 0.00 0.00 30.78 2.10
369 370 4.052159 CGTCTGTTGGAGATGCTCTTAT 57.948 45.455 0.00 0.00 30.78 1.73
370 371 5.188327 CGTCTGTTGGAGATGCTCTTATA 57.812 43.478 0.00 0.00 30.78 0.98
487 3728 2.770164 AGTAAGCATCGGCACTTCTT 57.230 45.000 0.00 0.00 44.61 2.52
497 3738 5.008613 GCATCGGCACTTCTTATAAAATGGA 59.991 40.000 0.00 0.00 40.72 3.41
704 3945 3.306973 GTGGTGAAAAACTGCAGAAAAGC 59.693 43.478 23.35 9.43 0.00 3.51
742 3983 4.761739 TCCTTGCAAAAACATGTAGAGAGG 59.238 41.667 0.00 1.16 0.00 3.69
782 4023 9.127277 CAATTTCCTTTATATTTTCGGAGGGTA 57.873 33.333 0.00 0.00 0.00 3.69
835 4076 6.642707 ACCCGAATTTGTGTGAAAAAGATA 57.357 33.333 0.00 0.00 0.00 1.98
836 4077 6.677913 ACCCGAATTTGTGTGAAAAAGATAG 58.322 36.000 0.00 0.00 0.00 2.08
837 4078 5.572896 CCCGAATTTGTGTGAAAAAGATAGC 59.427 40.000 0.00 0.00 0.00 2.97
1171 4412 1.821332 GGCCAATCCTTCCTCGCAG 60.821 63.158 0.00 0.00 0.00 5.18
1411 4652 4.783621 TGCCAGGCTCGCATCCAC 62.784 66.667 14.15 0.00 0.00 4.02
1688 4932 2.974698 GTGCAGCACAGACGGCTT 60.975 61.111 21.22 0.00 40.23 4.35
1786 5030 1.446099 GTCGCGCACATCAAGAGGA 60.446 57.895 8.75 0.00 0.00 3.71
2556 7754 2.022520 CTGATCGGATCGGACGTGA 58.977 57.895 19.89 0.00 37.90 4.35
2846 8074 2.718563 GATCCTCCGACCTCTCTATCC 58.281 57.143 0.00 0.00 0.00 2.59
2974 8202 6.492007 TTGTACTACTATAGCATCGTAGCC 57.508 41.667 0.00 0.00 35.25 3.93
3039 8269 9.846248 AATCAGATGAATAGTTGTAGCAAAAAC 57.154 29.630 0.00 0.00 0.00 2.43
3149 8379 5.893687 TGCAAACCAGCATATCAAATGTAG 58.106 37.500 0.00 0.00 40.11 2.74
3150 8380 5.163530 TGCAAACCAGCATATCAAATGTAGG 60.164 40.000 0.00 0.00 40.11 3.18
3151 8381 5.067674 GCAAACCAGCATATCAAATGTAGGA 59.932 40.000 0.00 0.00 0.00 2.94
3152 8382 6.732154 CAAACCAGCATATCAAATGTAGGAG 58.268 40.000 0.00 0.00 0.00 3.69
3153 8383 5.636903 ACCAGCATATCAAATGTAGGAGT 57.363 39.130 0.00 0.00 0.00 3.85
3154 8384 6.747414 ACCAGCATATCAAATGTAGGAGTA 57.253 37.500 0.00 0.00 0.00 2.59
3224 8454 4.654091 AAAAATATAACGGCTGCAGCAT 57.346 36.364 37.63 24.91 44.36 3.79
3225 8455 3.904136 AAATATAACGGCTGCAGCATC 57.096 42.857 37.63 21.66 44.36 3.91
3226 8456 2.847327 ATATAACGGCTGCAGCATCT 57.153 45.000 37.63 23.15 44.36 2.90
3227 8457 1.869774 TATAACGGCTGCAGCATCTG 58.130 50.000 37.63 25.44 44.36 2.90
3228 8458 0.178767 ATAACGGCTGCAGCATCTGA 59.821 50.000 37.63 19.79 44.36 3.27
3229 8459 0.036483 TAACGGCTGCAGCATCTGAA 60.036 50.000 37.63 16.26 44.36 3.02
3230 8460 0.890542 AACGGCTGCAGCATCTGAAA 60.891 50.000 37.63 0.00 44.36 2.69
3231 8461 0.890542 ACGGCTGCAGCATCTGAAAA 60.891 50.000 37.63 0.00 44.36 2.29
3232 8462 0.241749 CGGCTGCAGCATCTGAAAAA 59.758 50.000 37.63 0.00 44.36 1.94
3248 8478 2.561037 AAAAAGGGCCGGCAAGACG 61.561 57.895 30.85 0.00 0.00 4.18
3273 8503 1.033746 AAACAGAGATGGCCGCCATG 61.034 55.000 29.86 18.60 45.26 3.66
3274 8504 2.593725 CAGAGATGGCCGCCATGG 60.594 66.667 29.86 7.63 45.26 3.66
3275 8505 3.092511 AGAGATGGCCGCCATGGT 61.093 61.111 29.86 16.16 45.26 3.55
3282 8512 4.891727 GCCGCCATGGTCGTCGAT 62.892 66.667 21.61 0.00 41.21 3.59
3283 8513 2.961721 CCGCCATGGTCGTCGATG 60.962 66.667 21.61 0.00 0.00 3.84
3284 8514 3.630148 CGCCATGGTCGTCGATGC 61.630 66.667 14.67 0.00 0.00 3.91
3285 8515 3.272334 GCCATGGTCGTCGATGCC 61.272 66.667 14.67 5.48 0.00 4.40
3286 8516 2.186644 CCATGGTCGTCGATGCCA 59.813 61.111 18.81 18.81 36.64 4.92
3288 8518 1.141665 CATGGTCGTCGATGCCAGA 59.858 57.895 20.39 4.47 35.56 3.86
3290 8520 0.249120 ATGGTCGTCGATGCCAGAAA 59.751 50.000 20.39 3.63 35.56 2.52
3291 8521 0.669318 TGGTCGTCGATGCCAGAAAC 60.669 55.000 14.37 0.86 0.00 2.78
3292 8522 0.669318 GGTCGTCGATGCCAGAAACA 60.669 55.000 11.70 0.00 0.00 2.83
3293 8523 0.716108 GTCGTCGATGCCAGAAACAG 59.284 55.000 0.00 0.00 0.00 3.16
3294 8524 0.389817 TCGTCGATGCCAGAAACAGG 60.390 55.000 0.00 0.00 0.00 4.00
3295 8525 1.361668 CGTCGATGCCAGAAACAGGG 61.362 60.000 0.00 0.00 0.00 4.45
3297 8527 0.911769 TCGATGCCAGAAACAGGGAT 59.088 50.000 0.00 0.00 40.16 3.85
3298 8528 1.019673 CGATGCCAGAAACAGGGATG 58.980 55.000 0.00 0.00 37.32 3.51
3299 8529 1.396653 GATGCCAGAAACAGGGATGG 58.603 55.000 0.00 0.00 37.32 3.51
3300 8530 1.002069 ATGCCAGAAACAGGGATGGA 58.998 50.000 0.00 0.00 35.72 3.41
3301 8531 0.038166 TGCCAGAAACAGGGATGGAC 59.962 55.000 0.00 0.00 34.60 4.02
3302 8532 1.026718 GCCAGAAACAGGGATGGACG 61.027 60.000 0.00 0.00 34.60 4.79
3303 8533 0.613260 CCAGAAACAGGGATGGACGA 59.387 55.000 0.00 0.00 34.60 4.20
3305 8535 0.246635 AGAAACAGGGATGGACGACG 59.753 55.000 0.00 0.00 0.00 5.12
3306 8536 0.739813 GAAACAGGGATGGACGACGG 60.740 60.000 0.00 0.00 0.00 4.79
3307 8537 2.798148 AAACAGGGATGGACGACGGC 62.798 60.000 0.00 0.00 0.00 5.68
3312 8542 4.446413 GATGGACGACGGCCCGTT 62.446 66.667 19.30 1.13 43.49 4.44
3313 8543 4.752879 ATGGACGACGGCCCGTTG 62.753 66.667 21.89 21.89 45.61 4.10
3325 8555 3.322466 CCGTTGGGTGGAGCTCCT 61.322 66.667 32.28 0.00 36.82 3.69
3353 8583 3.803082 CCGGCAGCGTTGACCATG 61.803 66.667 2.38 0.00 0.00 3.66
3354 8584 3.803082 CGGCAGCGTTGACCATGG 61.803 66.667 11.19 11.19 0.00 3.66
3355 8585 4.120331 GGCAGCGTTGACCATGGC 62.120 66.667 13.04 5.35 0.00 4.40
3356 8586 4.465512 GCAGCGTTGACCATGGCG 62.466 66.667 13.04 8.51 0.00 5.69
3361 9526 2.009108 CGTTGACCATGGCGATGAG 58.991 57.895 13.04 3.13 0.00 2.90
3379 9544 5.514559 CGATGAGCATGATAGTAATTCGAGG 59.485 44.000 0.00 0.00 0.00 4.63
3380 9545 6.596309 ATGAGCATGATAGTAATTCGAGGA 57.404 37.500 0.00 0.00 0.00 3.71
3381 9546 5.773575 TGAGCATGATAGTAATTCGAGGAC 58.226 41.667 0.00 0.00 0.00 3.85
3384 9549 3.637998 TGATAGTAATTCGAGGACGCC 57.362 47.619 0.00 0.00 39.58 5.68
3385 9550 2.031420 TGATAGTAATTCGAGGACGCCG 60.031 50.000 0.00 0.00 39.58 6.46
3386 9551 1.382522 TAGTAATTCGAGGACGCCGT 58.617 50.000 0.00 0.00 39.58 5.68
3387 9552 1.382522 AGTAATTCGAGGACGCCGTA 58.617 50.000 0.00 0.00 39.58 4.02
3388 9553 1.332997 AGTAATTCGAGGACGCCGTAG 59.667 52.381 0.00 0.00 39.58 3.51
3402 9567 2.107705 CGTAGGAGCGTGTGAGGAT 58.892 57.895 0.00 0.00 0.00 3.24
3403 9568 0.248661 CGTAGGAGCGTGTGAGGATG 60.249 60.000 0.00 0.00 0.00 3.51
3404 9569 0.103208 GTAGGAGCGTGTGAGGATGG 59.897 60.000 0.00 0.00 0.00 3.51
3405 9570 1.043116 TAGGAGCGTGTGAGGATGGG 61.043 60.000 0.00 0.00 0.00 4.00
3406 9571 2.187946 GAGCGTGTGAGGATGGGG 59.812 66.667 0.00 0.00 0.00 4.96
3409 9574 2.187946 CGTGTGAGGATGGGGCTC 59.812 66.667 0.00 0.00 0.00 4.70
3410 9575 2.187946 GTGTGAGGATGGGGCTCG 59.812 66.667 0.00 0.00 0.00 5.03
3411 9576 2.284625 TGTGAGGATGGGGCTCGT 60.285 61.111 0.00 0.00 0.00 4.18
3412 9577 2.187946 GTGAGGATGGGGCTCGTG 59.812 66.667 0.00 0.00 0.00 4.35
3413 9578 3.083349 TGAGGATGGGGCTCGTGG 61.083 66.667 0.00 0.00 0.00 4.94
3414 9579 4.554036 GAGGATGGGGCTCGTGGC 62.554 72.222 1.89 1.89 40.90 5.01
3423 9588 3.391382 GCTCGTGGCCCTGGTACT 61.391 66.667 0.00 0.00 34.27 2.73
3425 9590 3.064987 CTCGTGGCCCTGGTACTCG 62.065 68.421 0.00 0.00 0.00 4.18
3426 9591 3.066190 CGTGGCCCTGGTACTCGA 61.066 66.667 0.00 0.00 0.00 4.04
3428 9593 2.363795 TGGCCCTGGTACTCGAGG 60.364 66.667 18.41 0.00 38.94 4.63
3429 9594 2.043248 GGCCCTGGTACTCGAGGA 60.043 66.667 18.41 4.89 41.22 3.71
3430 9595 2.128507 GGCCCTGGTACTCGAGGAG 61.129 68.421 18.41 6.71 41.22 3.69
3431 9596 1.380112 GCCCTGGTACTCGAGGAGT 60.380 63.158 18.41 3.52 45.54 3.85
3434 9599 0.818296 CCTGGTACTCGAGGAGTTGG 59.182 60.000 18.41 9.32 40.28 3.77
3435 9600 1.616187 CCTGGTACTCGAGGAGTTGGA 60.616 57.143 18.41 0.00 40.28 3.53
3436 9601 1.746220 CTGGTACTCGAGGAGTTGGAG 59.254 57.143 18.41 0.00 40.28 3.86
3437 9602 1.104630 GGTACTCGAGGAGTTGGAGG 58.895 60.000 18.41 0.00 40.28 4.30
3438 9603 0.456628 GTACTCGAGGAGTTGGAGGC 59.543 60.000 18.41 0.00 40.28 4.70
3440 9605 3.068691 TCGAGGAGTTGGAGGCGG 61.069 66.667 0.00 0.00 0.00 6.13
3441 9606 4.148825 CGAGGAGTTGGAGGCGGG 62.149 72.222 0.00 0.00 0.00 6.13
3443 9608 2.685380 AGGAGTTGGAGGCGGGAG 60.685 66.667 0.00 0.00 0.00 4.30
3444 9609 3.003763 GGAGTTGGAGGCGGGAGT 61.004 66.667 0.00 0.00 0.00 3.85
3445 9610 2.579738 GAGTTGGAGGCGGGAGTC 59.420 66.667 0.00 0.00 0.00 3.36
3446 9611 3.003763 AGTTGGAGGCGGGAGTCC 61.004 66.667 0.00 0.00 32.40 3.85
3448 9613 2.285368 TTGGAGGCGGGAGTCCAT 60.285 61.111 12.30 0.00 42.55 3.41
3450 9615 3.866582 GGAGGCGGGAGTCCATGG 61.867 72.222 12.30 4.97 32.40 3.66
3451 9616 2.764128 GAGGCGGGAGTCCATGGA 60.764 66.667 11.44 11.44 32.40 3.41
3453 9618 2.190578 GGCGGGAGTCCATGGAAG 59.809 66.667 18.20 7.02 0.00 3.46
3455 9620 2.190578 CGGGAGTCCATGGAAGGC 59.809 66.667 18.20 8.62 0.00 4.35
3456 9621 2.370445 CGGGAGTCCATGGAAGGCT 61.370 63.158 18.20 9.84 0.00 4.58
3457 9622 1.529309 GGGAGTCCATGGAAGGCTC 59.471 63.158 18.20 18.31 33.69 4.70
3460 9625 0.179936 GAGTCCATGGAAGGCTCCTG 59.820 60.000 18.20 0.00 42.94 3.86
3461 9626 0.252881 AGTCCATGGAAGGCTCCTGA 60.253 55.000 18.20 0.00 42.94 3.86
3462 9627 0.179936 GTCCATGGAAGGCTCCTGAG 59.820 60.000 18.20 0.00 42.94 3.35
3499 9664 4.217159 GGTGGGGGCTACGCGTAG 62.217 72.222 35.95 35.95 36.29 3.51
3500 9665 4.217159 GTGGGGGCTACGCGTAGG 62.217 72.222 38.81 24.44 33.87 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.823330 ATCCTCGGCGGTGTCGTC 61.823 66.667 7.21 0.00 38.89 4.20
4 5 4.129737 CATCCTCGGCGGTGTCGT 62.130 66.667 7.21 0.00 38.89 4.34
5 6 1.792118 TATCATCCTCGGCGGTGTCG 61.792 60.000 7.21 0.00 39.81 4.35
6 7 0.039074 CTATCATCCTCGGCGGTGTC 60.039 60.000 7.21 0.00 0.00 3.67
9 10 1.464376 CCACTATCATCCTCGGCGGT 61.464 60.000 7.21 0.00 0.00 5.68
11 12 0.319040 CACCACTATCATCCTCGGCG 60.319 60.000 0.00 0.00 0.00 6.46
12 13 1.040646 TCACCACTATCATCCTCGGC 58.959 55.000 0.00 0.00 0.00 5.54
13 14 2.893489 TCATCACCACTATCATCCTCGG 59.107 50.000 0.00 0.00 0.00 4.63
15 16 5.735285 TCATCATCACCACTATCATCCTC 57.265 43.478 0.00 0.00 0.00 3.71
18 19 5.747675 CGCTATCATCATCACCACTATCATC 59.252 44.000 0.00 0.00 0.00 2.92
20 21 4.766891 TCGCTATCATCATCACCACTATCA 59.233 41.667 0.00 0.00 0.00 2.15
21 22 5.098893 GTCGCTATCATCATCACCACTATC 58.901 45.833 0.00 0.00 0.00 2.08
22 23 4.769488 AGTCGCTATCATCATCACCACTAT 59.231 41.667 0.00 0.00 0.00 2.12
23 24 4.145052 AGTCGCTATCATCATCACCACTA 58.855 43.478 0.00 0.00 0.00 2.74
24 25 2.961741 AGTCGCTATCATCATCACCACT 59.038 45.455 0.00 0.00 0.00 4.00
25 26 3.377346 AGTCGCTATCATCATCACCAC 57.623 47.619 0.00 0.00 0.00 4.16
26 27 4.827284 TCTAAGTCGCTATCATCATCACCA 59.173 41.667 0.00 0.00 0.00 4.17
28 29 6.007936 ACTCTAAGTCGCTATCATCATCAC 57.992 41.667 0.00 0.00 0.00 3.06
29 30 6.937465 ACTACTCTAAGTCGCTATCATCATCA 59.063 38.462 0.00 0.00 0.00 3.07
30 31 7.372451 ACTACTCTAAGTCGCTATCATCATC 57.628 40.000 0.00 0.00 0.00 2.92
31 32 7.753309 AACTACTCTAAGTCGCTATCATCAT 57.247 36.000 0.00 0.00 0.00 2.45
32 33 7.569639 AAACTACTCTAAGTCGCTATCATCA 57.430 36.000 0.00 0.00 0.00 3.07
33 34 8.859517 AAAAACTACTCTAAGTCGCTATCATC 57.140 34.615 0.00 0.00 0.00 2.92
60 61 9.929722 GACAAACGATAAACATAGATTGCATTA 57.070 29.630 0.00 0.00 0.00 1.90
61 62 7.639850 CGACAAACGATAAACATAGATTGCATT 59.360 33.333 0.00 0.00 45.77 3.56
62 63 7.125755 CGACAAACGATAAACATAGATTGCAT 58.874 34.615 0.00 0.00 45.77 3.96
64 65 6.475207 ACGACAAACGATAAACATAGATTGC 58.525 36.000 0.00 0.00 45.77 3.56
66 67 9.887406 AAAAACGACAAACGATAAACATAGATT 57.113 25.926 0.00 0.00 45.77 2.40
77 78 8.508800 TGCATAAAATAAAAACGACAAACGAT 57.491 26.923 0.00 0.00 45.77 3.73
78 79 7.909777 TGCATAAAATAAAAACGACAAACGA 57.090 28.000 0.00 0.00 45.77 3.85
93 94 8.632679 ACATCCGAAACATAGATTGCATAAAAT 58.367 29.630 0.00 0.00 0.00 1.82
94 95 7.995289 ACATCCGAAACATAGATTGCATAAAA 58.005 30.769 0.00 0.00 0.00 1.52
95 96 7.566760 ACATCCGAAACATAGATTGCATAAA 57.433 32.000 0.00 0.00 0.00 1.40
96 97 8.669946 TTACATCCGAAACATAGATTGCATAA 57.330 30.769 0.00 0.00 0.00 1.90
97 98 8.669946 TTTACATCCGAAACATAGATTGCATA 57.330 30.769 0.00 0.00 0.00 3.14
98 99 7.566760 TTTACATCCGAAACATAGATTGCAT 57.433 32.000 0.00 0.00 0.00 3.96
101 102 9.878599 GGTATTTTACATCCGAAACATAGATTG 57.121 33.333 0.00 0.00 0.00 2.67
103 104 9.847224 AAGGTATTTTACATCCGAAACATAGAT 57.153 29.630 0.00 0.00 0.00 1.98
105 106 9.716507 CAAAGGTATTTTACATCCGAAACATAG 57.283 33.333 0.00 0.00 0.00 2.23
106 107 9.233649 ACAAAGGTATTTTACATCCGAAACATA 57.766 29.630 0.00 0.00 0.00 2.29
107 108 8.117813 ACAAAGGTATTTTACATCCGAAACAT 57.882 30.769 0.00 0.00 0.00 2.71
109 110 9.712359 GATACAAAGGTATTTTACATCCGAAAC 57.288 33.333 0.00 0.00 40.28 2.78
111 112 7.765360 ACGATACAAAGGTATTTTACATCCGAA 59.235 33.333 0.00 0.00 40.28 4.30
123 124 9.772973 TGCATAGATTAAACGATACAAAGGTAT 57.227 29.630 0.00 0.00 42.86 2.73
124 125 9.602568 TTGCATAGATTAAACGATACAAAGGTA 57.397 29.630 0.00 0.00 0.00 3.08
126 127 9.599322 GATTGCATAGATTAAACGATACAAAGG 57.401 33.333 0.00 0.00 0.00 3.11
187 188 3.181497 GCGTGACCAGAAATGTATGCATT 60.181 43.478 3.54 2.84 46.38 3.56
189 190 1.737236 GCGTGACCAGAAATGTATGCA 59.263 47.619 0.00 0.00 0.00 3.96
191 192 1.267532 GCGCGTGACCAGAAATGTATG 60.268 52.381 8.43 0.00 0.00 2.39
193 194 1.348538 CGCGCGTGACCAGAAATGTA 61.349 55.000 24.19 0.00 0.00 2.29
194 195 2.667318 CGCGCGTGACCAGAAATGT 61.667 57.895 24.19 0.00 0.00 2.71
195 196 2.096406 CGCGCGTGACCAGAAATG 59.904 61.111 24.19 0.00 0.00 2.32
196 197 3.788766 GCGCGCGTGACCAGAAAT 61.789 61.111 32.35 0.00 0.00 2.17
197 198 4.961511 AGCGCGCGTGACCAGAAA 62.962 61.111 32.35 0.00 0.00 2.52
204 205 2.561628 CTAAAATGCAGCGCGCGTGA 62.562 55.000 32.35 13.71 46.97 4.35
205 206 2.202285 TAAAATGCAGCGCGCGTG 60.202 55.556 32.35 26.47 46.97 5.34
206 207 2.098298 CTAAAATGCAGCGCGCGT 59.902 55.556 32.35 15.53 46.97 6.01
207 208 3.307262 GCTAAAATGCAGCGCGCG 61.307 61.111 28.44 28.44 46.97 6.86
212 213 2.100991 AGCGCGCTAAAATGCAGC 59.899 55.556 35.79 0.00 36.80 5.25
243 244 3.526536 CTGAAATGCAACGCGCGC 61.527 61.111 32.58 23.91 46.97 6.86
249 250 3.174573 GCCGCGCTGAAATGCAAC 61.175 61.111 5.56 0.00 0.00 4.17
250 251 3.364441 AGCCGCGCTGAAATGCAA 61.364 55.556 5.56 0.00 37.57 4.08
293 294 3.451894 GCCCATCGCCTGGTTTGG 61.452 66.667 0.00 0.14 44.30 3.28
294 295 3.814268 CGCCCATCGCCTGGTTTG 61.814 66.667 0.00 0.00 44.30 2.93
342 343 0.389948 ATCTCCAACAGACGCCGAAC 60.390 55.000 0.00 0.00 32.26 3.95
344 345 1.215382 CATCTCCAACAGACGCCGA 59.785 57.895 0.00 0.00 32.26 5.54
345 346 2.456119 GCATCTCCAACAGACGCCG 61.456 63.158 0.00 0.00 33.99 6.46
346 347 1.078848 AGCATCTCCAACAGACGCC 60.079 57.895 0.00 0.00 41.57 5.68
497 3738 5.234329 GCGTGCATTGTACACTGTAATAGAT 59.766 40.000 13.98 0.00 35.84 1.98
514 3755 0.455410 ACTTTTGTGTGTGCGTGCAT 59.545 45.000 0.00 0.00 0.00 3.96
668 3909 7.283807 AGTTTTTCACCACCTTTACGTCTAATT 59.716 33.333 0.00 0.00 0.00 1.40
704 3945 4.700700 TGCAAGGATCATCACATCTACAG 58.299 43.478 0.00 0.00 0.00 2.74
742 3983 3.130633 GGAAATTGCAGTTTTCACCACC 58.869 45.455 19.68 8.63 35.29 4.61
1397 4638 4.457496 ACGGTGGATGCGAGCCTG 62.457 66.667 0.00 0.00 0.00 4.85
1483 4724 2.047179 GAACACCTCGACCCTGCC 60.047 66.667 0.00 0.00 0.00 4.85
1786 5030 4.150454 CTCCTCCTCCCCGAGCCT 62.150 72.222 0.00 0.00 0.00 4.58
2556 7754 0.962356 CAAGAAAGAGGCCATGGCGT 60.962 55.000 31.09 31.09 43.06 5.68
2846 8074 3.382832 ACCTCTCCGGCAAGGTCG 61.383 66.667 18.82 0.24 42.28 4.79
3029 8259 7.007995 GCTACAATCGGTTTATGTTTTTGCTAC 59.992 37.037 0.00 0.00 0.00 3.58
3149 8379 7.041107 TGCATGGAAATTTTATTTGCTACTCC 58.959 34.615 13.73 0.00 0.00 3.85
3150 8380 8.477984 TTGCATGGAAATTTTATTTGCTACTC 57.522 30.769 0.00 0.00 0.00 2.59
3153 8383 9.881649 TGTATTGCATGGAAATTTTATTTGCTA 57.118 25.926 2.94 9.08 0.00 3.49
3154 8384 8.789825 TGTATTGCATGGAAATTTTATTTGCT 57.210 26.923 2.94 0.00 0.00 3.91
3230 8460 2.561037 CGTCTTGCCGGCCCTTTTT 61.561 57.895 26.77 0.00 0.00 1.94
3231 8461 2.983592 CGTCTTGCCGGCCCTTTT 60.984 61.111 26.77 0.00 0.00 2.27
3253 8483 0.323725 ATGGCGGCCATCTCTGTTTT 60.324 50.000 28.37 4.24 40.74 2.43
3255 8485 1.452651 CATGGCGGCCATCTCTGTT 60.453 57.895 30.92 7.43 43.15 3.16
3257 8487 2.593725 CCATGGCGGCCATCTCTG 60.594 66.667 30.92 21.00 43.15 3.35
3258 8488 3.092511 ACCATGGCGGCCATCTCT 61.093 61.111 30.92 13.54 43.15 3.10
3259 8489 2.592861 GACCATGGCGGCCATCTC 60.593 66.667 30.92 22.70 43.15 2.75
3261 8491 4.856801 ACGACCATGGCGGCCATC 62.857 66.667 30.92 20.02 43.15 3.51
3266 8496 2.961721 CATCGACGACCATGGCGG 60.962 66.667 25.35 15.29 42.50 6.13
3267 8497 3.630148 GCATCGACGACCATGGCG 61.630 66.667 21.83 21.83 0.00 5.69
3268 8498 3.272334 GGCATCGACGACCATGGC 61.272 66.667 13.04 3.41 38.28 4.40
3269 8499 1.884464 CTGGCATCGACGACCATGG 60.884 63.158 11.19 11.19 31.79 3.66
3272 8502 0.669318 GTTTCTGGCATCGACGACCA 60.669 55.000 0.00 3.02 0.00 4.02
3273 8503 0.669318 TGTTTCTGGCATCGACGACC 60.669 55.000 0.00 0.00 0.00 4.79
3274 8504 0.716108 CTGTTTCTGGCATCGACGAC 59.284 55.000 0.00 0.00 0.00 4.34
3275 8505 0.389817 CCTGTTTCTGGCATCGACGA 60.390 55.000 0.00 0.00 0.00 4.20
3277 8507 0.036388 TCCCTGTTTCTGGCATCGAC 60.036 55.000 0.00 0.00 0.00 4.20
3278 8508 0.911769 ATCCCTGTTTCTGGCATCGA 59.088 50.000 0.00 0.00 0.00 3.59
3279 8509 1.019673 CATCCCTGTTTCTGGCATCG 58.980 55.000 0.00 0.00 0.00 3.84
3280 8510 1.064463 TCCATCCCTGTTTCTGGCATC 60.064 52.381 0.00 0.00 0.00 3.91
3282 8512 0.038166 GTCCATCCCTGTTTCTGGCA 59.962 55.000 0.00 0.00 0.00 4.92
3283 8513 1.026718 CGTCCATCCCTGTTTCTGGC 61.027 60.000 0.00 0.00 0.00 4.85
3284 8514 0.613260 TCGTCCATCCCTGTTTCTGG 59.387 55.000 0.00 0.00 0.00 3.86
3285 8515 1.726853 GTCGTCCATCCCTGTTTCTG 58.273 55.000 0.00 0.00 0.00 3.02
3286 8516 0.246635 CGTCGTCCATCCCTGTTTCT 59.753 55.000 0.00 0.00 0.00 2.52
3288 8518 1.295423 CCGTCGTCCATCCCTGTTT 59.705 57.895 0.00 0.00 0.00 2.83
3290 8520 3.771160 GCCGTCGTCCATCCCTGT 61.771 66.667 0.00 0.00 0.00 4.00
3291 8521 4.530857 GGCCGTCGTCCATCCCTG 62.531 72.222 0.00 0.00 0.00 4.45
3295 8525 4.446413 AACGGGCCGTCGTCCATC 62.446 66.667 34.23 0.00 43.07 3.51
3309 8539 2.266055 GAGGAGCTCCACCCAACG 59.734 66.667 33.90 0.00 38.89 4.10
3336 8566 3.803082 CATGGTCAACGCTGCCGG 61.803 66.667 0.00 0.00 39.22 6.13
3337 8567 3.803082 CCATGGTCAACGCTGCCG 61.803 66.667 2.57 0.00 41.14 5.69
3338 8568 4.120331 GCCATGGTCAACGCTGCC 62.120 66.667 14.67 0.00 0.00 4.85
3339 8569 4.465512 CGCCATGGTCAACGCTGC 62.466 66.667 14.67 0.00 0.00 5.25
3340 8570 2.108514 ATCGCCATGGTCAACGCTG 61.109 57.895 14.67 0.00 0.00 5.18
3341 8571 2.108514 CATCGCCATGGTCAACGCT 61.109 57.895 14.67 0.00 0.00 5.07
3342 8572 2.040213 CTCATCGCCATGGTCAACGC 62.040 60.000 14.67 0.00 0.00 4.84
3343 8573 2.009108 CTCATCGCCATGGTCAACG 58.991 57.895 14.67 8.45 0.00 4.10
3344 8574 1.026182 TGCTCATCGCCATGGTCAAC 61.026 55.000 14.67 0.00 38.05 3.18
3346 8576 0.816421 CATGCTCATCGCCATGGTCA 60.816 55.000 14.67 0.00 38.05 4.02
3347 8577 0.533531 TCATGCTCATCGCCATGGTC 60.534 55.000 14.67 4.79 38.05 4.02
3348 8578 0.109913 ATCATGCTCATCGCCATGGT 59.890 50.000 14.67 0.00 38.05 3.55
3349 8579 2.007608 CTATCATGCTCATCGCCATGG 58.992 52.381 7.63 7.63 38.05 3.66
3351 8581 4.541973 TTACTATCATGCTCATCGCCAT 57.458 40.909 0.00 0.00 38.05 4.40
3352 8582 4.541973 ATTACTATCATGCTCATCGCCA 57.458 40.909 0.00 0.00 38.05 5.69
3353 8583 4.032217 CGAATTACTATCATGCTCATCGCC 59.968 45.833 0.00 0.00 38.05 5.54
3354 8584 4.859245 TCGAATTACTATCATGCTCATCGC 59.141 41.667 0.00 0.00 39.77 4.58
3355 8585 5.514559 CCTCGAATTACTATCATGCTCATCG 59.485 44.000 0.00 0.00 0.00 3.84
3356 8586 6.529829 GTCCTCGAATTACTATCATGCTCATC 59.470 42.308 0.00 0.00 0.00 2.92
3361 9526 3.365220 GCGTCCTCGAATTACTATCATGC 59.635 47.826 0.00 0.00 39.71 4.06
3367 9532 1.382522 ACGGCGTCCTCGAATTACTA 58.617 50.000 6.77 0.00 39.71 1.82
3372 9537 1.445716 CTCCTACGGCGTCCTCGAAT 61.446 60.000 19.21 0.00 39.71 3.34
3373 9538 2.046023 TCCTACGGCGTCCTCGAA 60.046 61.111 19.21 0.00 39.71 3.71
3374 9539 2.513204 CTCCTACGGCGTCCTCGA 60.513 66.667 19.21 6.96 39.71 4.04
3375 9540 4.253257 GCTCCTACGGCGTCCTCG 62.253 72.222 19.21 5.30 40.37 4.63
3376 9541 4.253257 CGCTCCTACGGCGTCCTC 62.253 72.222 19.21 1.45 46.37 3.71
3384 9549 0.248661 CATCCTCACACGCTCCTACG 60.249 60.000 0.00 0.00 39.50 3.51
3385 9550 0.103208 CCATCCTCACACGCTCCTAC 59.897 60.000 0.00 0.00 0.00 3.18
3386 9551 1.043116 CCCATCCTCACACGCTCCTA 61.043 60.000 0.00 0.00 0.00 2.94
3387 9552 2.362369 CCCATCCTCACACGCTCCT 61.362 63.158 0.00 0.00 0.00 3.69
3388 9553 2.187946 CCCATCCTCACACGCTCC 59.812 66.667 0.00 0.00 0.00 4.70
3389 9554 2.187946 CCCCATCCTCACACGCTC 59.812 66.667 0.00 0.00 0.00 5.03
3390 9555 4.101448 GCCCCATCCTCACACGCT 62.101 66.667 0.00 0.00 0.00 5.07
3391 9556 4.101448 AGCCCCATCCTCACACGC 62.101 66.667 0.00 0.00 0.00 5.34
3392 9557 2.187946 GAGCCCCATCCTCACACG 59.812 66.667 0.00 0.00 0.00 4.49
3393 9558 2.187946 CGAGCCCCATCCTCACAC 59.812 66.667 0.00 0.00 0.00 3.82
3394 9559 2.284625 ACGAGCCCCATCCTCACA 60.285 61.111 0.00 0.00 0.00 3.58
3395 9560 2.187946 CACGAGCCCCATCCTCAC 59.812 66.667 0.00 0.00 0.00 3.51
3396 9561 3.083349 CCACGAGCCCCATCCTCA 61.083 66.667 0.00 0.00 0.00 3.86
3397 9562 4.554036 GCCACGAGCCCCATCCTC 62.554 72.222 0.00 0.00 34.35 3.71
3406 9571 3.372554 GAGTACCAGGGCCACGAGC 62.373 68.421 6.18 0.00 42.60 5.03
3409 9574 3.064987 CTCGAGTACCAGGGCCACG 62.065 68.421 6.18 0.00 0.00 4.94
3410 9575 2.722201 CCTCGAGTACCAGGGCCAC 61.722 68.421 12.31 0.00 0.00 5.01
3411 9576 2.363795 CCTCGAGTACCAGGGCCA 60.364 66.667 12.31 0.00 0.00 5.36
3412 9577 2.043248 TCCTCGAGTACCAGGGCC 60.043 66.667 12.31 0.00 0.00 5.80
3413 9578 0.971447 AACTCCTCGAGTACCAGGGC 60.971 60.000 12.31 0.00 42.59 5.19
3414 9579 0.818296 CAACTCCTCGAGTACCAGGG 59.182 60.000 12.31 0.00 42.59 4.45
3416 9581 1.746220 CTCCAACTCCTCGAGTACCAG 59.254 57.143 12.31 4.17 42.59 4.00
3417 9582 1.616187 CCTCCAACTCCTCGAGTACCA 60.616 57.143 12.31 0.00 42.59 3.25
3418 9583 1.104630 CCTCCAACTCCTCGAGTACC 58.895 60.000 12.31 0.00 42.59 3.34
3420 9585 1.030488 CGCCTCCAACTCCTCGAGTA 61.030 60.000 12.31 0.00 42.59 2.59
3423 9588 3.068691 CCGCCTCCAACTCCTCGA 61.069 66.667 0.00 0.00 0.00 4.04
3425 9590 2.683933 TCCCGCCTCCAACTCCTC 60.684 66.667 0.00 0.00 0.00 3.71
3426 9591 2.685380 CTCCCGCCTCCAACTCCT 60.685 66.667 0.00 0.00 0.00 3.69
3428 9593 2.579738 GACTCCCGCCTCCAACTC 59.420 66.667 0.00 0.00 0.00 3.01
3429 9594 3.003763 GGACTCCCGCCTCCAACT 61.004 66.667 0.00 0.00 0.00 3.16
3430 9595 2.670148 ATGGACTCCCGCCTCCAAC 61.670 63.158 0.00 0.00 40.05 3.77
3431 9596 2.285368 ATGGACTCCCGCCTCCAA 60.285 61.111 0.00 0.00 40.05 3.53
3434 9599 2.317149 CTTCCATGGACTCCCGCCTC 62.317 65.000 15.91 0.00 34.29 4.70
3435 9600 2.285368 TTCCATGGACTCCCGCCT 60.285 61.111 15.91 0.00 34.29 5.52
3436 9601 2.190578 CTTCCATGGACTCCCGCC 59.809 66.667 15.91 0.00 34.29 6.13
3437 9602 2.190578 CCTTCCATGGACTCCCGC 59.809 66.667 15.91 0.00 34.29 6.13
3438 9603 2.190578 GCCTTCCATGGACTCCCG 59.809 66.667 15.91 1.01 34.29 5.14
3440 9605 0.985490 AGGAGCCTTCCATGGACTCC 60.985 60.000 30.05 30.05 46.64 3.85
3441 9606 0.179936 CAGGAGCCTTCCATGGACTC 59.820 60.000 15.91 17.46 46.64 3.36
3443 9608 0.179936 CTCAGGAGCCTTCCATGGAC 59.820 60.000 15.91 2.84 46.64 4.02
3444 9609 2.612760 CTCAGGAGCCTTCCATGGA 58.387 57.895 11.44 11.44 46.64 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.