Multiple sequence alignment - TraesCS2B01G362600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G362600 chr2B 100.000 6352 0 0 1 6352 516526305 516532656 0.000000e+00 11731.0
1 TraesCS2B01G362600 chr2D 95.827 3283 99 23 1 3269 438701273 438704531 0.000000e+00 5269.0
2 TraesCS2B01G362600 chr2D 91.706 2351 74 43 3501 5801 438705479 438707758 0.000000e+00 3149.0
3 TraesCS2B01G362600 chr2D 96.399 833 27 3 3265 4095 438704614 438705445 0.000000e+00 1369.0
4 TraesCS2B01G362600 chr2D 89.935 308 11 5 5837 6124 438707757 438708064 4.650000e-101 379.0
5 TraesCS2B01G362600 chr2D 82.243 107 16 3 6204 6309 601006238 601006342 8.770000e-14 89.8
6 TraesCS2B01G362600 chr2D 100.000 30 0 0 3523 3552 438705438 438705467 8.900000e-04 56.5
7 TraesCS2B01G362600 chr2A 94.450 2775 121 19 451 3209 550192695 550189938 0.000000e+00 4241.0
8 TraesCS2B01G362600 chr2A 91.007 2969 129 67 3204 6124 550189681 550186803 0.000000e+00 3877.0
9 TraesCS2B01G362600 chr5D 84.112 107 14 3 6204 6309 333071305 333071201 4.050000e-17 100.0
10 TraesCS2B01G362600 chr5D 84.112 107 14 3 6204 6309 504081546 504081442 4.050000e-17 100.0
11 TraesCS2B01G362600 chr3D 83.333 90 15 0 6208 6297 308819838 308819927 4.080000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G362600 chr2B 516526305 516532656 6351 False 11731.0 11731 100.0000 1 6352 1 chr2B.!!$F1 6351
1 TraesCS2B01G362600 chr2D 438701273 438708064 6791 False 2044.5 5269 94.7734 1 6124 5 chr2D.!!$F2 6123
2 TraesCS2B01G362600 chr2A 550186803 550192695 5892 True 4059.0 4241 92.7285 451 6124 2 chr2A.!!$R1 5673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
196 197 0.593008 GGGGCGTGAAAACGTTTCAC 60.593 55.000 22.68 22.68 43.85 3.18 F
1661 1682 1.159285 TGGCAGCACGAGATTTCAAG 58.841 50.000 0.00 0.00 0.00 3.02 F
1870 1896 1.668826 TGGCCATGAGAGGTTTAGGT 58.331 50.000 0.00 0.00 0.00 3.08 F
1883 1909 2.289565 GTTTAGGTGCCATCTGTAGCC 58.710 52.381 0.00 0.00 0.00 3.93 F
1892 1918 2.298610 CCATCTGTAGCCTCGTCTACA 58.701 52.381 11.97 11.97 44.61 2.74 F
3864 4872 0.951040 CACCGACTTGTTGAGCTCCC 60.951 60.000 12.15 2.07 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 1949 0.595053 CCATACACGCCTAGCACGAG 60.595 60.000 9.99 5.09 0.00 4.18 R
2569 2596 1.965414 TTACCCTGATCTGCCTTGGA 58.035 50.000 0.00 0.00 0.00 3.53 R
3828 4836 2.476686 CGGTGCTGTGAATAGTTGCATG 60.477 50.000 0.00 0.00 36.04 4.06 R
3864 4872 4.037923 AGCACTTTCACATTTGGGTACTTG 59.962 41.667 0.00 0.00 0.00 3.16 R
3927 4935 4.692228 TCAAATCAAGGGCACAAGAAAAC 58.308 39.130 0.00 0.00 0.00 2.43 R
5673 6734 1.557099 TCCCACGAAGATGCTACTGT 58.443 50.000 0.00 0.00 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
151 152 3.052869 GGGGAAGGGATATGGTTGACTTT 60.053 47.826 0.00 0.00 0.00 2.66
189 190 1.301479 ACGAGAGGGGCGTGAAAAC 60.301 57.895 0.00 0.00 40.94 2.43
196 197 0.593008 GGGGCGTGAAAACGTTTCAC 60.593 55.000 22.68 22.68 43.85 3.18
252 253 1.225745 GTGTGAGATTTTCGCGGCG 60.226 57.895 17.70 17.70 39.22 6.46
303 304 2.370849 CCAGCACCCGGGTAGTAATATT 59.629 50.000 29.72 0.00 0.00 1.28
313 314 5.221461 CCGGGTAGTAATATTCTTGCTCACT 60.221 44.000 0.00 0.00 0.00 3.41
364 365 4.762289 AAGATAGCTACCCTTGTTCCAG 57.238 45.455 8.86 0.00 0.00 3.86
421 422 4.293662 AGAACCTCACTTCCATTCCTTC 57.706 45.455 0.00 0.00 0.00 3.46
427 428 4.702131 CCTCACTTCCATTCCTTCGATTTT 59.298 41.667 0.00 0.00 0.00 1.82
428 429 5.183904 CCTCACTTCCATTCCTTCGATTTTT 59.816 40.000 0.00 0.00 0.00 1.94
433 434 6.940298 ACTTCCATTCCTTCGATTTTTCTGTA 59.060 34.615 0.00 0.00 0.00 2.74
435 436 6.472887 TCCATTCCTTCGATTTTTCTGTACT 58.527 36.000 0.00 0.00 0.00 2.73
519 521 7.606456 ACCTACAAATGAAACGATCAACATAGT 59.394 33.333 0.00 0.00 42.54 2.12
535 541 9.807921 ATCAACATAGTTTCTTTCCCTCTTTAA 57.192 29.630 0.00 0.00 0.00 1.52
536 542 9.635404 TCAACATAGTTTCTTTCCCTCTTTAAA 57.365 29.630 0.00 0.00 0.00 1.52
730 739 6.411320 CCCCTCCATATCTTCCAAGAAAATCT 60.411 42.308 0.00 0.00 38.77 2.40
1442 1460 2.988684 TGGTTCGTGGGCATTGGC 60.989 61.111 0.70 0.70 40.13 4.52
1483 1501 5.180117 TGCAGTTCTTGATGCTTCTTTACTC 59.820 40.000 0.88 0.00 42.98 2.59
1521 1542 7.907214 ATGGAGTGATTCTTTACTTGTACAC 57.093 36.000 0.00 0.00 0.00 2.90
1618 1639 7.071824 AGGTTTTAATCCATGGGTTCTTTCAAA 59.928 33.333 15.19 6.00 0.00 2.69
1620 1641 9.936759 GTTTTAATCCATGGGTTCTTTCAAATA 57.063 29.630 15.19 0.00 0.00 1.40
1661 1682 1.159285 TGGCAGCACGAGATTTCAAG 58.841 50.000 0.00 0.00 0.00 3.02
1720 1744 6.521151 AAGATTTTGTAGATCCCAGCAAAG 57.479 37.500 0.00 0.00 33.25 2.77
1755 1779 8.902806 TGTTATTGTTTCTTTGTGTGAGATTCT 58.097 29.630 0.00 0.00 0.00 2.40
1786 1810 6.313905 ACATACTTGAAACTGAAGGATTAGCG 59.686 38.462 0.00 0.00 0.00 4.26
1862 1888 3.284617 TGAACATTGATGGCCATGAGAG 58.715 45.455 26.56 13.64 0.00 3.20
1870 1896 1.668826 TGGCCATGAGAGGTTTAGGT 58.331 50.000 0.00 0.00 0.00 3.08
1883 1909 2.289565 GTTTAGGTGCCATCTGTAGCC 58.710 52.381 0.00 0.00 0.00 3.93
1892 1918 2.298610 CCATCTGTAGCCTCGTCTACA 58.701 52.381 11.97 11.97 44.61 2.74
1923 1949 6.620678 TCTTTATGTTCTTACAATGCCTTGC 58.379 36.000 1.19 0.00 37.91 4.01
1937 1963 2.432456 TTGCTCGTGCTAGGCGTG 60.432 61.111 11.19 0.00 40.48 5.34
2085 2111 9.868277 TTGACAACATCAATACTCTTTTGTTTT 57.132 25.926 0.00 0.00 42.62 2.43
2088 2114 8.695456 ACAACATCAATACTCTTTTGTTTTCCT 58.305 29.630 0.00 0.00 0.00 3.36
2090 2116 9.750125 AACATCAATACTCTTTTGTTTTCCTTC 57.250 29.630 0.00 0.00 0.00 3.46
2146 2173 5.530171 CCCTCTGGTGTCAAATATGATTGAG 59.470 44.000 0.00 0.00 39.84 3.02
2149 2176 7.186570 TCTGGTGTCAAATATGATTGAGAGA 57.813 36.000 0.00 0.00 39.84 3.10
2180 2207 5.010719 TGAACTTCAGAAAGACGTCTATGGT 59.989 40.000 20.39 9.44 36.30 3.55
2186 2213 6.100004 TCAGAAAGACGTCTATGGTTTCATC 58.900 40.000 20.39 6.36 34.96 2.92
2253 2280 7.581213 TTTTCGAATAAGCACCCATGATTAT 57.419 32.000 0.00 0.00 46.83 1.28
2280 2307 2.770164 TAGACTTTTCTGCTCAGGCC 57.230 50.000 0.00 0.00 37.74 5.19
2355 2382 5.932303 AGTGTAAAACAATCAGTCGTAGCAT 59.068 36.000 0.00 0.00 0.00 3.79
2409 2436 3.199946 TCTTTGGTCAGAACCTCTGTGTT 59.800 43.478 3.71 0.00 46.60 3.32
2520 2547 2.481952 GTCACAAGAGCTTGGACATGAC 59.518 50.000 14.14 13.34 44.45 3.06
2592 2619 3.117738 CCAAGGCAGATCAGGGTAAATCT 60.118 47.826 0.00 0.00 32.44 2.40
2601 2628 9.174166 GCAGATCAGGGTAAATCTTTTTACTTA 57.826 33.333 0.00 0.00 44.35 2.24
2952 2979 3.824443 GCAAGGCTAACAAAGGTAGGAAA 59.176 43.478 0.00 0.00 0.00 3.13
2973 3000 8.327271 AGGAAAGAATATGATGCACTATGCTAT 58.673 33.333 2.02 0.00 45.31 2.97
3106 3133 3.637229 CAGTACCTCCGGACATGTTCTAT 59.363 47.826 0.00 0.00 0.00 1.98
3485 3861 9.896645 ATCTTCTCATGAAAGTAATTGCTAGAA 57.103 29.630 13.69 0.66 0.00 2.10
3486 3862 9.725019 TCTTCTCATGAAAGTAATTGCTAGAAA 57.275 29.630 13.69 0.00 0.00 2.52
3513 4519 6.116126 ACCTGCCATTCTATCTTTGTAAGTC 58.884 40.000 0.00 0.00 0.00 3.01
3696 4703 6.127507 TGACAATCATGACAAACAGGAAAACA 60.128 34.615 0.00 0.00 42.50 2.83
3704 4711 5.708230 TGACAAACAGGAAAACAACTAGTGT 59.292 36.000 0.00 0.00 44.64 3.55
3864 4872 0.951040 CACCGACTTGTTGAGCTCCC 60.951 60.000 12.15 2.07 0.00 4.30
3927 4935 3.684305 TGACAAGCTTGGTCACATTATCG 59.316 43.478 29.18 0.64 40.16 2.92
4001 5009 7.431376 CAGCTTGATGTTGCATGTTTTAGATAG 59.569 37.037 0.00 0.00 0.00 2.08
4010 5018 9.604626 GTTGCATGTTTTAGATAGAATATCTGC 57.395 33.333 9.13 4.42 0.00 4.26
4052 5060 8.519526 CCATATTACCTTTGCTTGAACTTGTAA 58.480 33.333 0.00 0.00 0.00 2.41
4080 5088 5.553557 TCTGAGGATCCTCTAGTATCCATCA 59.446 44.000 35.84 15.70 43.55 3.07
4339 5350 3.812053 GCATCATGACGAGGAAATAAGCT 59.188 43.478 0.00 0.00 0.00 3.74
4409 5420 6.766944 TGTCTTGACAAAAATGCATTTTCCAT 59.233 30.769 31.78 21.64 39.20 3.41
4445 5456 3.243035 TGTTTCTGGTGCATTCAAAGACG 60.243 43.478 0.00 0.00 0.00 4.18
4447 5458 1.202758 TCTGGTGCATTCAAAGACGGT 60.203 47.619 0.00 0.00 0.00 4.83
4585 5613 6.421377 TCAATGTTGTTGGTTCAGATATCG 57.579 37.500 0.00 0.00 0.00 2.92
4872 5907 8.958506 TCTAGTGTCTTAGTGTTAGGAAAGATC 58.041 37.037 0.00 0.00 31.16 2.75
4873 5908 7.540474 AGTGTCTTAGTGTTAGGAAAGATCA 57.460 36.000 0.00 0.00 31.16 2.92
4874 5909 8.140112 AGTGTCTTAGTGTTAGGAAAGATCAT 57.860 34.615 0.00 0.00 31.16 2.45
4875 5910 8.598041 AGTGTCTTAGTGTTAGGAAAGATCATT 58.402 33.333 0.00 0.00 31.16 2.57
4876 5911 9.220767 GTGTCTTAGTGTTAGGAAAGATCATTT 57.779 33.333 0.00 0.00 31.16 2.32
4877 5912 9.219603 TGTCTTAGTGTTAGGAAAGATCATTTG 57.780 33.333 0.00 0.00 31.16 2.32
4878 5913 9.436957 GTCTTAGTGTTAGGAAAGATCATTTGA 57.563 33.333 0.00 0.00 31.16 2.69
4917 5952 7.036996 TGATCAGCTTTGTTAATGTTGTTGA 57.963 32.000 0.00 0.00 0.00 3.18
4924 5959 9.630098 AGCTTTGTTAATGTTGTTGATGAATAG 57.370 29.630 0.00 0.00 0.00 1.73
4927 5962 7.459795 TGTTAATGTTGTTGATGAATAGCCA 57.540 32.000 0.00 0.00 0.00 4.75
4951 5986 2.977772 TTTCTTGGGTTTTGTGCTGG 57.022 45.000 0.00 0.00 0.00 4.85
4963 5998 6.073276 GGGTTTTGTGCTGGATTAAATGAAAC 60.073 38.462 0.00 0.00 0.00 2.78
5034 6071 6.773685 ACGAGGTAGTTCATAGAGAAGCTAAT 59.226 38.462 0.00 0.00 36.78 1.73
5146 6186 4.464069 AGCTAGTTTTAGGAGCTCACTG 57.536 45.455 17.19 6.22 42.97 3.66
5152 6192 7.713073 GCTAGTTTTAGGAGCTCACTGAATTAT 59.287 37.037 17.19 5.43 33.28 1.28
5162 6202 5.527951 AGCTCACTGAATTATCTGCAGAATG 59.472 40.000 22.50 9.00 40.87 2.67
5169 6209 7.937942 ACTGAATTATCTGCAGAATGATAGCTT 59.062 33.333 22.50 2.92 39.69 3.74
5376 6424 2.284263 TCAGAGCGTCAATAGTGCAG 57.716 50.000 0.00 0.00 0.00 4.41
5479 6527 1.299926 CATGCCGCCGTAGTAGGAC 60.300 63.158 0.00 0.00 0.00 3.85
5490 6538 4.280174 GCCGTAGTAGGACAATTCATCCTA 59.720 45.833 9.95 9.95 45.18 2.94
5579 6627 1.469079 GGCGTGTCAAACTGCTTTGTT 60.469 47.619 0.00 0.00 38.38 2.83
5582 6630 2.539476 GTGTCAAACTGCTTTGTTGGG 58.461 47.619 0.00 0.00 38.38 4.12
5583 6631 2.094234 GTGTCAAACTGCTTTGTTGGGT 60.094 45.455 0.00 0.00 38.38 4.51
5584 6632 2.094286 TGTCAAACTGCTTTGTTGGGTG 60.094 45.455 0.00 0.00 38.38 4.61
5585 6633 1.480137 TCAAACTGCTTTGTTGGGTGG 59.520 47.619 0.00 0.00 38.38 4.61
5613 6661 4.654262 TGGTTAACCCACCTCTCAGATATC 59.346 45.833 21.97 0.00 38.72 1.63
5654 6702 1.691219 GAGGAAATGACAGGGCCCA 59.309 57.895 27.56 2.25 0.00 5.36
5664 6712 2.225242 TGACAGGGCCCATGTTGTTTAT 60.225 45.455 27.56 0.00 0.00 1.40
5673 6734 7.018149 AGGGCCCATGTTGTTTATACTGATATA 59.982 37.037 27.56 0.00 0.00 0.86
5747 6809 3.825143 AGCATGTTGGCTTCAAACTTT 57.175 38.095 0.00 0.00 42.71 2.66
5755 6817 8.564574 CATGTTGGCTTCAAACTTTAGTTACTA 58.435 33.333 0.00 0.00 37.25 1.82
5756 6818 7.922837 TGTTGGCTTCAAACTTTAGTTACTAC 58.077 34.615 0.00 0.00 37.25 2.73
5757 6819 7.771826 TGTTGGCTTCAAACTTTAGTTACTACT 59.228 33.333 0.00 0.00 37.25 2.57
5759 6821 6.932960 TGGCTTCAAACTTTAGTTACTACTCC 59.067 38.462 0.00 0.00 37.25 3.85
5761 6823 7.117956 GGCTTCAAACTTTAGTTACTACTCCTG 59.882 40.741 0.00 0.00 37.25 3.86
5762 6824 7.656542 GCTTCAAACTTTAGTTACTACTCCTGT 59.343 37.037 0.00 0.00 37.25 4.00
5763 6825 9.543783 CTTCAAACTTTAGTTACTACTCCTGTT 57.456 33.333 0.00 0.00 37.25 3.16
5764 6826 9.895138 TTCAAACTTTAGTTACTACTCCTGTTT 57.105 29.630 0.00 0.00 37.25 2.83
5765 6827 9.321562 TCAAACTTTAGTTACTACTCCTGTTTG 57.678 33.333 17.89 17.89 41.92 2.93
5766 6828 7.725818 AACTTTAGTTACTACTCCTGTTTGC 57.274 36.000 0.00 0.00 36.32 3.68
5767 6829 6.823497 ACTTTAGTTACTACTCCTGTTTGCA 58.177 36.000 0.00 0.00 35.78 4.08
5787 6849 3.730715 GCATTATGTTATCCTGTTTGCGC 59.269 43.478 0.00 0.00 0.00 6.09
5813 6909 3.307674 TGATGTCATCGCTTTGTTTTGC 58.692 40.909 8.29 0.00 0.00 3.68
5814 6910 3.004629 TGATGTCATCGCTTTGTTTTGCT 59.995 39.130 8.29 0.00 0.00 3.91
5815 6911 3.435105 TGTCATCGCTTTGTTTTGCTT 57.565 38.095 0.00 0.00 0.00 3.91
5816 6912 3.779759 TGTCATCGCTTTGTTTTGCTTT 58.220 36.364 0.00 0.00 0.00 3.51
5817 6913 4.180057 TGTCATCGCTTTGTTTTGCTTTT 58.820 34.783 0.00 0.00 0.00 2.27
5818 6914 4.267452 TGTCATCGCTTTGTTTTGCTTTTC 59.733 37.500 0.00 0.00 0.00 2.29
5819 6915 4.504097 GTCATCGCTTTGTTTTGCTTTTCT 59.496 37.500 0.00 0.00 0.00 2.52
5820 6916 4.503734 TCATCGCTTTGTTTTGCTTTTCTG 59.496 37.500 0.00 0.00 0.00 3.02
5821 6917 2.602660 TCGCTTTGTTTTGCTTTTCTGC 59.397 40.909 0.00 0.00 0.00 4.26
5822 6918 2.348059 CGCTTTGTTTTGCTTTTCTGCA 59.652 40.909 0.00 0.00 41.65 4.41
5823 6919 3.542680 CGCTTTGTTTTGCTTTTCTGCAG 60.543 43.478 7.63 7.63 44.27 4.41
5824 6920 3.786489 GCTTTGTTTTGCTTTTCTGCAGC 60.786 43.478 9.47 0.00 44.27 5.25
5825 6921 2.669300 TGTTTTGCTTTTCTGCAGCA 57.331 40.000 9.47 0.00 45.73 4.41
5831 6927 3.738830 TGCTTTTCTGCAGCAAATTCT 57.261 38.095 11.98 0.00 44.42 2.40
5832 6928 4.062677 TGCTTTTCTGCAGCAAATTCTT 57.937 36.364 11.98 0.00 44.42 2.52
5833 6929 5.199024 TGCTTTTCTGCAGCAAATTCTTA 57.801 34.783 11.98 0.00 44.42 2.10
5834 6930 5.786311 TGCTTTTCTGCAGCAAATTCTTAT 58.214 33.333 11.98 0.00 44.42 1.73
5835 6931 5.636121 TGCTTTTCTGCAGCAAATTCTTATG 59.364 36.000 11.98 0.35 44.42 1.90
5836 6932 5.865552 GCTTTTCTGCAGCAAATTCTTATGA 59.134 36.000 11.98 0.00 37.22 2.15
5837 6933 6.534079 GCTTTTCTGCAGCAAATTCTTATGAT 59.466 34.615 11.98 0.00 37.22 2.45
5838 6934 7.464178 GCTTTTCTGCAGCAAATTCTTATGATG 60.464 37.037 11.98 0.00 37.22 3.07
5839 6935 6.519679 TTCTGCAGCAAATTCTTATGATGT 57.480 33.333 9.47 0.00 35.47 3.06
5840 6936 6.519679 TCTGCAGCAAATTCTTATGATGTT 57.480 33.333 9.47 0.00 35.47 2.71
5841 6937 6.558009 TCTGCAGCAAATTCTTATGATGTTC 58.442 36.000 9.47 0.00 35.47 3.18
5842 6938 5.653507 TGCAGCAAATTCTTATGATGTTCC 58.346 37.500 0.00 0.00 35.47 3.62
5843 6939 5.045872 GCAGCAAATTCTTATGATGTTCCC 58.954 41.667 0.00 0.00 35.47 3.97
5844 6940 5.163478 GCAGCAAATTCTTATGATGTTCCCT 60.163 40.000 0.00 0.00 35.47 4.20
5845 6941 6.501781 CAGCAAATTCTTATGATGTTCCCTC 58.498 40.000 0.00 0.00 0.00 4.30
5846 6942 5.297776 AGCAAATTCTTATGATGTTCCCTCG 59.702 40.000 0.00 0.00 0.00 4.63
5847 6943 5.066505 GCAAATTCTTATGATGTTCCCTCGT 59.933 40.000 0.00 0.00 0.00 4.18
5848 6944 6.489675 CAAATTCTTATGATGTTCCCTCGTG 58.510 40.000 0.00 0.00 0.00 4.35
5849 6945 5.614324 ATTCTTATGATGTTCCCTCGTGA 57.386 39.130 0.00 0.00 0.00 4.35
5850 6946 4.655762 TCTTATGATGTTCCCTCGTGAG 57.344 45.455 0.00 0.00 0.00 3.51
5851 6947 4.278310 TCTTATGATGTTCCCTCGTGAGA 58.722 43.478 0.00 0.00 39.12 3.27
5912 7008 3.302434 CGCAAAGTAGCATGCATTTTCAG 59.698 43.478 21.98 8.87 42.68 3.02
5980 7076 7.619964 TTTTGACGGGAAGGTCTAAAATATC 57.380 36.000 1.03 0.00 38.22 1.63
6023 7138 8.122952 CACAGGCTTAGTGTATTTGCTAATAAC 58.877 37.037 2.05 4.28 32.44 1.89
6124 7243 1.523258 CCGGATGCTTCTGCTCCAG 60.523 63.158 0.00 0.00 40.48 3.86
6125 7244 1.523258 CGGATGCTTCTGCTCCAGG 60.523 63.158 0.00 0.00 40.48 4.45
6126 7245 1.823041 GGATGCTTCTGCTCCAGGC 60.823 63.158 0.00 0.00 40.48 4.85
6127 7246 1.823041 GATGCTTCTGCTCCAGGCC 60.823 63.158 0.00 0.00 40.92 5.19
6128 7247 2.547640 GATGCTTCTGCTCCAGGCCA 62.548 60.000 5.01 0.00 40.92 5.36
6129 7248 2.034687 GCTTCTGCTCCAGGCCAA 59.965 61.111 5.01 0.00 40.92 4.52
6130 7249 2.338785 GCTTCTGCTCCAGGCCAAC 61.339 63.158 5.01 0.00 40.92 3.77
6131 7250 1.377994 CTTCTGCTCCAGGCCAACT 59.622 57.895 5.01 0.00 40.92 3.16
6132 7251 0.251077 CTTCTGCTCCAGGCCAACTT 60.251 55.000 5.01 0.00 40.92 2.66
6133 7252 0.250901 TTCTGCTCCAGGCCAACTTC 60.251 55.000 5.01 0.00 40.92 3.01
6134 7253 1.073722 CTGCTCCAGGCCAACTTCA 59.926 57.895 5.01 0.00 40.92 3.02
6135 7254 1.228245 TGCTCCAGGCCAACTTCAC 60.228 57.895 5.01 0.00 40.92 3.18
6136 7255 1.973812 GCTCCAGGCCAACTTCACC 60.974 63.158 5.01 0.00 34.27 4.02
6137 7256 1.455849 CTCCAGGCCAACTTCACCA 59.544 57.895 5.01 0.00 0.00 4.17
6138 7257 0.890996 CTCCAGGCCAACTTCACCAC 60.891 60.000 5.01 0.00 0.00 4.16
6139 7258 2.260869 CCAGGCCAACTTCACCACG 61.261 63.158 5.01 0.00 0.00 4.94
6140 7259 1.227823 CAGGCCAACTTCACCACGA 60.228 57.895 5.01 0.00 0.00 4.35
6141 7260 1.227853 AGGCCAACTTCACCACGAC 60.228 57.895 5.01 0.00 0.00 4.34
6142 7261 1.227853 GGCCAACTTCACCACGACT 60.228 57.895 0.00 0.00 0.00 4.18
6143 7262 0.818040 GGCCAACTTCACCACGACTT 60.818 55.000 0.00 0.00 0.00 3.01
6144 7263 0.586802 GCCAACTTCACCACGACTTC 59.413 55.000 0.00 0.00 0.00 3.01
6145 7264 1.948104 CCAACTTCACCACGACTTCA 58.052 50.000 0.00 0.00 0.00 3.02
6146 7265 2.285083 CCAACTTCACCACGACTTCAA 58.715 47.619 0.00 0.00 0.00 2.69
6147 7266 2.680841 CCAACTTCACCACGACTTCAAA 59.319 45.455 0.00 0.00 0.00 2.69
6148 7267 3.315191 CCAACTTCACCACGACTTCAAAT 59.685 43.478 0.00 0.00 0.00 2.32
6149 7268 4.282068 CAACTTCACCACGACTTCAAATG 58.718 43.478 0.00 0.00 0.00 2.32
6150 7269 2.878406 ACTTCACCACGACTTCAAATGG 59.122 45.455 0.00 0.00 38.26 3.16
6151 7270 2.920724 TCACCACGACTTCAAATGGA 57.079 45.000 0.00 0.00 36.04 3.41
6152 7271 3.417069 TCACCACGACTTCAAATGGAT 57.583 42.857 0.00 0.00 36.04 3.41
6153 7272 3.073678 TCACCACGACTTCAAATGGATG 58.926 45.455 0.00 0.00 36.04 3.51
6154 7273 2.813754 CACCACGACTTCAAATGGATGT 59.186 45.455 0.00 0.00 36.67 3.06
6155 7274 3.074412 ACCACGACTTCAAATGGATGTC 58.926 45.455 0.00 0.00 43.62 3.06
6156 7275 2.420022 CCACGACTTCAAATGGATGTCC 59.580 50.000 0.00 0.00 43.98 4.02
6157 7276 2.094258 CACGACTTCAAATGGATGTCCG 59.906 50.000 0.00 0.00 43.98 4.79
6158 7277 1.665679 CGACTTCAAATGGATGTCCGG 59.334 52.381 0.00 0.00 43.98 5.14
6159 7278 2.711542 GACTTCAAATGGATGTCCGGT 58.288 47.619 0.00 0.00 42.12 5.28
6160 7279 3.081804 GACTTCAAATGGATGTCCGGTT 58.918 45.455 0.00 0.00 42.12 4.44
6161 7280 3.496331 ACTTCAAATGGATGTCCGGTTT 58.504 40.909 0.00 0.00 39.43 3.27
6162 7281 3.255642 ACTTCAAATGGATGTCCGGTTTG 59.744 43.478 17.02 17.02 41.53 2.93
6163 7282 2.166829 TCAAATGGATGTCCGGTTTGG 58.833 47.619 20.24 9.38 41.02 3.28
6164 7283 0.894835 AAATGGATGTCCGGTTTGGC 59.105 50.000 0.00 0.00 39.43 4.52
6165 7284 0.039618 AATGGATGTCCGGTTTGGCT 59.960 50.000 0.00 0.00 39.43 4.75
6166 7285 0.680921 ATGGATGTCCGGTTTGGCTG 60.681 55.000 0.00 0.00 39.43 4.85
6167 7286 2.046285 GGATGTCCGGTTTGGCTGG 61.046 63.158 0.00 0.00 45.18 4.85
6173 7292 3.512978 CCGGTTTGGCTGGATTTTG 57.487 52.632 0.00 0.00 46.81 2.44
6174 7293 0.678950 CCGGTTTGGCTGGATTTTGT 59.321 50.000 0.00 0.00 46.81 2.83
6175 7294 1.336795 CCGGTTTGGCTGGATTTTGTC 60.337 52.381 0.00 0.00 46.81 3.18
6176 7295 4.546944 CCGGTTTGGCTGGATTTTGTCC 62.547 54.545 0.00 0.00 46.81 4.02
6186 7305 2.946564 GGATTTTGTCCTTTTGAGGCG 58.053 47.619 0.00 0.00 44.16 5.52
6187 7306 2.352715 GGATTTTGTCCTTTTGAGGCGG 60.353 50.000 0.00 0.00 44.16 6.13
6188 7307 0.387565 TTTTGTCCTTTTGAGGCGGC 59.612 50.000 0.00 0.00 0.00 6.53
6189 7308 0.753479 TTTGTCCTTTTGAGGCGGCA 60.753 50.000 13.08 0.00 0.00 5.69
6190 7309 0.753479 TTGTCCTTTTGAGGCGGCAA 60.753 50.000 13.08 0.00 0.00 4.52
6191 7310 0.539438 TGTCCTTTTGAGGCGGCAAT 60.539 50.000 13.08 0.00 0.00 3.56
6192 7311 0.109132 GTCCTTTTGAGGCGGCAATG 60.109 55.000 13.08 0.00 0.00 2.82
6193 7312 1.216178 CCTTTTGAGGCGGCAATGG 59.784 57.895 13.08 4.90 0.00 3.16
6194 7313 1.216178 CTTTTGAGGCGGCAATGGG 59.784 57.895 13.08 0.00 0.00 4.00
6195 7314 1.532794 TTTTGAGGCGGCAATGGGT 60.533 52.632 13.08 0.00 0.00 4.51
6196 7315 1.118356 TTTTGAGGCGGCAATGGGTT 61.118 50.000 13.08 0.00 0.00 4.11
6197 7316 1.531739 TTTGAGGCGGCAATGGGTTC 61.532 55.000 13.08 0.00 0.00 3.62
6198 7317 3.508840 GAGGCGGCAATGGGTTCG 61.509 66.667 13.08 0.00 0.00 3.95
6210 7329 3.603365 GGTTCGCCCATCCCTTTG 58.397 61.111 0.00 0.00 0.00 2.77
6211 7330 1.001393 GGTTCGCCCATCCCTTTGA 60.001 57.895 0.00 0.00 0.00 2.69
6212 7331 1.032114 GGTTCGCCCATCCCTTTGAG 61.032 60.000 0.00 0.00 0.00 3.02
6213 7332 1.032114 GTTCGCCCATCCCTTTGAGG 61.032 60.000 0.00 0.00 34.30 3.86
6214 7333 2.830370 CGCCCATCCCTTTGAGGC 60.830 66.667 0.00 0.00 40.33 4.70
6215 7334 2.830370 GCCCATCCCTTTGAGGCG 60.830 66.667 0.00 0.00 32.73 5.52
6216 7335 2.124151 CCCATCCCTTTGAGGCGG 60.124 66.667 0.00 0.00 32.73 6.13
6217 7336 2.830370 CCATCCCTTTGAGGCGGC 60.830 66.667 0.00 0.00 32.73 6.53
6218 7337 2.045045 CATCCCTTTGAGGCGGCA 60.045 61.111 13.08 0.00 32.73 5.69
6219 7338 1.678635 CATCCCTTTGAGGCGGCAA 60.679 57.895 13.08 0.00 32.73 4.52
6220 7339 1.039233 CATCCCTTTGAGGCGGCAAT 61.039 55.000 13.08 0.00 32.73 3.56
6221 7340 1.039233 ATCCCTTTGAGGCGGCAATG 61.039 55.000 13.08 0.00 32.73 2.82
6222 7341 2.713967 CCCTTTGAGGCGGCAATGG 61.714 63.158 13.08 15.98 40.73 3.16
6223 7342 2.713967 CCTTTGAGGCGGCAATGGG 61.714 63.158 13.08 2.55 38.64 4.00
6224 7343 1.978617 CTTTGAGGCGGCAATGGGT 60.979 57.895 13.08 0.00 0.00 4.51
6225 7344 1.532794 TTTGAGGCGGCAATGGGTT 60.533 52.632 13.08 0.00 0.00 4.11
6226 7345 1.531739 TTTGAGGCGGCAATGGGTTC 61.532 55.000 13.08 0.00 0.00 3.62
6227 7346 3.508840 GAGGCGGCAATGGGTTCG 61.509 66.667 13.08 0.00 0.00 3.95
6239 7358 3.112842 GGTTCGCCCGTGTTTGTT 58.887 55.556 0.00 0.00 0.00 2.83
6240 7359 1.009335 GGTTCGCCCGTGTTTGTTC 60.009 57.895 0.00 0.00 0.00 3.18
6241 7360 1.441732 GGTTCGCCCGTGTTTGTTCT 61.442 55.000 0.00 0.00 0.00 3.01
6242 7361 0.379316 GTTCGCCCGTGTTTGTTCTT 59.621 50.000 0.00 0.00 0.00 2.52
6243 7362 0.378962 TTCGCCCGTGTTTGTTCTTG 59.621 50.000 0.00 0.00 0.00 3.02
6244 7363 0.745128 TCGCCCGTGTTTGTTCTTGT 60.745 50.000 0.00 0.00 0.00 3.16
6245 7364 0.316689 CGCCCGTGTTTGTTCTTGTC 60.317 55.000 0.00 0.00 0.00 3.18
6246 7365 1.021968 GCCCGTGTTTGTTCTTGTCT 58.978 50.000 0.00 0.00 0.00 3.41
6247 7366 1.268539 GCCCGTGTTTGTTCTTGTCTG 60.269 52.381 0.00 0.00 0.00 3.51
6248 7367 2.014128 CCCGTGTTTGTTCTTGTCTGT 58.986 47.619 0.00 0.00 0.00 3.41
6249 7368 2.422127 CCCGTGTTTGTTCTTGTCTGTT 59.578 45.455 0.00 0.00 0.00 3.16
6250 7369 3.425404 CCGTGTTTGTTCTTGTCTGTTG 58.575 45.455 0.00 0.00 0.00 3.33
6251 7370 3.425404 CGTGTTTGTTCTTGTCTGTTGG 58.575 45.455 0.00 0.00 0.00 3.77
6252 7371 3.126171 CGTGTTTGTTCTTGTCTGTTGGA 59.874 43.478 0.00 0.00 0.00 3.53
6253 7372 4.201910 CGTGTTTGTTCTTGTCTGTTGGAT 60.202 41.667 0.00 0.00 0.00 3.41
6254 7373 5.273944 GTGTTTGTTCTTGTCTGTTGGATC 58.726 41.667 0.00 0.00 0.00 3.36
6255 7374 4.035091 TGTTTGTTCTTGTCTGTTGGATCG 59.965 41.667 0.00 0.00 0.00 3.69
6256 7375 3.469008 TGTTCTTGTCTGTTGGATCGT 57.531 42.857 0.00 0.00 0.00 3.73
6257 7376 3.130633 TGTTCTTGTCTGTTGGATCGTG 58.869 45.455 0.00 0.00 0.00 4.35
6258 7377 1.795768 TCTTGTCTGTTGGATCGTGC 58.204 50.000 0.00 0.00 0.00 5.34
6259 7378 0.439985 CTTGTCTGTTGGATCGTGCG 59.560 55.000 0.00 0.00 0.00 5.34
6260 7379 0.249699 TTGTCTGTTGGATCGTGCGT 60.250 50.000 0.00 0.00 0.00 5.24
6261 7380 0.943835 TGTCTGTTGGATCGTGCGTG 60.944 55.000 0.00 0.00 0.00 5.34
6262 7381 2.027073 TCTGTTGGATCGTGCGTGC 61.027 57.895 0.00 0.00 0.00 5.34
6263 7382 2.280457 TGTTGGATCGTGCGTGCA 60.280 55.556 0.00 0.00 0.00 4.57
6264 7383 2.173382 GTTGGATCGTGCGTGCAC 59.827 61.111 14.81 14.81 43.01 4.57
6265 7384 3.047280 TTGGATCGTGCGTGCACC 61.047 61.111 18.51 4.74 43.49 5.01
6266 7385 3.529341 TTGGATCGTGCGTGCACCT 62.529 57.895 18.51 6.89 43.49 4.00
6267 7386 2.161078 TTGGATCGTGCGTGCACCTA 62.161 55.000 18.51 8.13 43.49 3.08
6268 7387 2.165301 GGATCGTGCGTGCACCTAC 61.165 63.158 18.51 9.59 43.49 3.18
6269 7388 2.125673 ATCGTGCGTGCACCTACC 60.126 61.111 18.51 0.00 43.49 3.18
6270 7389 3.982372 ATCGTGCGTGCACCTACCG 62.982 63.158 18.51 8.79 43.49 4.02
6289 7408 3.810896 GCGGTCGCACCCCAAATC 61.811 66.667 10.67 0.00 41.49 2.17
6290 7409 2.359354 CGGTCGCACCCCAAATCA 60.359 61.111 0.50 0.00 33.75 2.57
6291 7410 1.748879 CGGTCGCACCCCAAATCAT 60.749 57.895 0.50 0.00 33.75 2.45
6292 7411 1.809207 GGTCGCACCCCAAATCATG 59.191 57.895 0.00 0.00 30.04 3.07
6293 7412 0.965363 GGTCGCACCCCAAATCATGT 60.965 55.000 0.00 0.00 30.04 3.21
6294 7413 0.451783 GTCGCACCCCAAATCATGTC 59.548 55.000 0.00 0.00 0.00 3.06
6295 7414 0.679640 TCGCACCCCAAATCATGTCC 60.680 55.000 0.00 0.00 0.00 4.02
6296 7415 1.809207 GCACCCCAAATCATGTCCG 59.191 57.895 0.00 0.00 0.00 4.79
6297 7416 0.965363 GCACCCCAAATCATGTCCGT 60.965 55.000 0.00 0.00 0.00 4.69
6298 7417 0.810648 CACCCCAAATCATGTCCGTG 59.189 55.000 0.00 0.00 0.00 4.94
6299 7418 0.404040 ACCCCAAATCATGTCCGTGT 59.596 50.000 0.00 0.00 0.00 4.49
6300 7419 1.203001 ACCCCAAATCATGTCCGTGTT 60.203 47.619 0.00 0.00 0.00 3.32
6301 7420 1.202114 CCCCAAATCATGTCCGTGTTG 59.798 52.381 0.00 0.00 0.00 3.33
6302 7421 1.202114 CCCAAATCATGTCCGTGTTGG 59.798 52.381 0.00 0.00 36.17 3.77
6310 7429 2.431771 TCCGTGTTGGATCGTGCG 60.432 61.111 0.00 0.00 43.74 5.34
6311 7430 2.736995 CCGTGTTGGATCGTGCGT 60.737 61.111 0.00 0.00 42.00 5.24
6312 7431 2.469847 CGTGTTGGATCGTGCGTG 59.530 61.111 0.00 0.00 0.00 5.34
6313 7432 2.173382 GTGTTGGATCGTGCGTGC 59.827 61.111 0.00 0.00 0.00 5.34
6314 7433 3.410516 TGTTGGATCGTGCGTGCG 61.411 61.111 0.00 0.00 0.00 5.34
6315 7434 4.794241 GTTGGATCGTGCGTGCGC 62.794 66.667 9.85 9.85 42.35 6.09
6318 7437 4.865761 GGATCGTGCGTGCGCCTA 62.866 66.667 14.16 0.00 41.09 3.93
6319 7438 3.617538 GATCGTGCGTGCGCCTAC 61.618 66.667 14.16 5.61 41.09 3.18
6339 7458 3.202001 CGCGATCGCACCCCAAAT 61.202 61.111 36.45 0.00 42.06 2.32
6340 7459 2.715624 GCGATCGCACCCCAAATC 59.284 61.111 33.89 0.34 41.49 2.17
6341 7460 2.112198 GCGATCGCACCCCAAATCA 61.112 57.895 33.89 0.00 41.49 2.57
6342 7461 1.447317 GCGATCGCACCCCAAATCAT 61.447 55.000 33.89 0.00 41.49 2.45
6343 7462 0.308684 CGATCGCACCCCAAATCATG 59.691 55.000 0.26 0.00 0.00 3.07
6344 7463 1.392589 GATCGCACCCCAAATCATGT 58.607 50.000 0.00 0.00 0.00 3.21
6345 7464 1.334869 GATCGCACCCCAAATCATGTC 59.665 52.381 0.00 0.00 0.00 3.06
6346 7465 0.679640 TCGCACCCCAAATCATGTCC 60.680 55.000 0.00 0.00 0.00 4.02
6347 7466 1.809207 GCACCCCAAATCATGTCCG 59.191 57.895 0.00 0.00 0.00 4.79
6348 7467 1.809207 CACCCCAAATCATGTCCGC 59.191 57.895 0.00 0.00 0.00 5.54
6349 7468 0.964860 CACCCCAAATCATGTCCGCA 60.965 55.000 0.00 0.00 0.00 5.69
6350 7469 0.033208 ACCCCAAATCATGTCCGCAT 60.033 50.000 0.00 0.00 35.32 4.73
6351 7470 1.113788 CCCCAAATCATGTCCGCATT 58.886 50.000 0.00 0.00 31.99 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.116073 CGAAAATTTGGGTTCGGGC 57.884 52.632 2.71 0.00 42.21 6.13
70 71 1.760480 GGGGCGGGTAAATTGGCAT 60.760 57.895 0.00 0.00 0.00 4.40
151 152 1.065345 TGTCGTTCACCTCCCACAAAA 60.065 47.619 0.00 0.00 0.00 2.44
189 190 1.798813 GTAGAGGCAACCTGTGAAACG 59.201 52.381 0.00 0.00 36.92 3.60
196 197 1.805945 GCGACGTAGAGGCAACCTG 60.806 63.158 0.00 0.00 31.76 4.00
219 220 3.864686 CACACATAGGCACCGCGC 61.865 66.667 0.00 0.00 41.28 6.86
289 290 4.989168 GTGAGCAAGAATATTACTACCCGG 59.011 45.833 0.00 0.00 0.00 5.73
303 304 0.750249 TGGTTCGTGAGTGAGCAAGA 59.250 50.000 0.00 0.00 0.00 3.02
313 314 1.774639 GCTAGTCGTTTGGTTCGTGA 58.225 50.000 0.00 0.00 0.00 4.35
364 365 0.464554 GGTTGCTGGGCTATCTCACC 60.465 60.000 0.00 0.00 0.00 4.02
493 495 6.817765 ATGTTGATCGTTTCATTTGTAGGT 57.182 33.333 0.00 0.00 33.34 3.08
535 541 7.122204 CGGGAAGTGAGGGTTCTTTAATTAATT 59.878 37.037 5.89 5.89 0.00 1.40
536 542 6.602009 CGGGAAGTGAGGGTTCTTTAATTAAT 59.398 38.462 0.00 0.00 0.00 1.40
537 543 5.941647 CGGGAAGTGAGGGTTCTTTAATTAA 59.058 40.000 0.00 0.00 0.00 1.40
538 544 5.493809 CGGGAAGTGAGGGTTCTTTAATTA 58.506 41.667 0.00 0.00 0.00 1.40
730 739 7.035004 CGGAAGATATCATTTTCTTTTTGCCA 58.965 34.615 5.32 0.00 32.46 4.92
1273 1289 4.344865 GCCAAGAACTCCGCCCCA 62.345 66.667 0.00 0.00 0.00 4.96
1483 1501 2.095768 CACTCCATACACAAAGTTGGCG 60.096 50.000 0.00 0.00 32.10 5.69
1618 1639 5.497474 ACAGCAATAAAGACGAACCCTTAT 58.503 37.500 0.00 0.00 0.00 1.73
1620 1641 3.751518 ACAGCAATAAAGACGAACCCTT 58.248 40.909 0.00 0.00 0.00 3.95
1677 1699 5.962433 TCTTTGGACCTTAACAGATCTACG 58.038 41.667 0.00 0.00 0.00 3.51
1720 1744 5.453567 AAGAAACAATAACAGGCACTTCC 57.546 39.130 0.00 0.00 34.60 3.46
1755 1779 5.221224 CCTTCAGTTTCAAGTATGTTGGCAA 60.221 40.000 0.00 0.00 0.00 4.52
1786 1810 3.371898 GGCTACAACATACCGTGGTAAAC 59.628 47.826 2.32 0.00 33.44 2.01
1797 1822 4.224147 TGCAAACCTAGAGGCTACAACATA 59.776 41.667 0.00 0.00 39.32 2.29
1801 1826 4.301072 AATGCAAACCTAGAGGCTACAA 57.699 40.909 0.00 0.00 39.32 2.41
1862 1888 2.289565 GCTACAGATGGCACCTAAACC 58.710 52.381 0.00 0.00 31.28 3.27
1870 1896 0.684479 AGACGAGGCTACAGATGGCA 60.684 55.000 0.00 0.00 32.95 4.92
1883 1909 6.269315 ACATAAAGAGCTTCATGTAGACGAG 58.731 40.000 3.14 0.00 30.04 4.18
1892 1918 8.186821 GCATTGTAAGAACATAAAGAGCTTCAT 58.813 33.333 0.00 0.00 34.97 2.57
1923 1949 0.595053 CCATACACGCCTAGCACGAG 60.595 60.000 9.99 5.09 0.00 4.18
1935 1961 4.261031 GCCAATCAACCGATAACCATACAC 60.261 45.833 0.00 0.00 0.00 2.90
1937 1963 3.880490 TGCCAATCAACCGATAACCATAC 59.120 43.478 0.00 0.00 0.00 2.39
2082 2108 9.857656 ATAATTGAGCATCTATCAGAAGGAAAA 57.142 29.630 0.00 0.00 34.92 2.29
2085 2111 7.816513 CGAATAATTGAGCATCTATCAGAAGGA 59.183 37.037 0.00 0.00 34.92 3.36
2088 2114 9.981114 TTACGAATAATTGAGCATCTATCAGAA 57.019 29.630 0.00 0.00 34.92 3.02
2146 2173 7.721286 TCTTTCTGAAGTTCAAAGACATCTC 57.279 36.000 13.62 0.00 32.41 2.75
2172 2199 8.682936 AATGTATTCCAGATGAAACCATAGAC 57.317 34.615 0.00 0.00 36.33 2.59
2180 2207 6.873076 GGCACAAAAATGTATTCCAGATGAAA 59.127 34.615 0.00 0.00 36.33 2.69
2186 2213 4.173036 ACGGCACAAAAATGTATTCCAG 57.827 40.909 0.00 0.00 0.00 3.86
2253 2280 8.218876 GCCTGAGCAGAAAAGTCTAAAGACTAA 61.219 40.741 12.85 0.00 46.22 2.24
2254 2281 6.794675 GCCTGAGCAGAAAAGTCTAAAGACTA 60.795 42.308 12.85 0.00 46.22 2.59
2280 2307 5.676532 TGGACACAAAGTATAAACCAACG 57.323 39.130 0.00 0.00 0.00 4.10
2355 2382 5.951148 TCTTTCATGGGCAGATGAATACAAA 59.049 36.000 10.83 0.00 41.03 2.83
2520 2547 5.065859 TGTTGTGCTTGTAAATATCCGGATG 59.934 40.000 27.55 8.50 0.00 3.51
2569 2596 1.965414 TTACCCTGATCTGCCTTGGA 58.035 50.000 0.00 0.00 0.00 3.53
3313 3689 2.938838 ACTAGATTCAGAGAGGGACGG 58.061 52.381 0.00 0.00 0.00 4.79
3485 3861 5.574188 ACAAAGATAGAATGGCAGGTCTTT 58.426 37.500 8.60 8.57 36.62 2.52
3486 3862 5.184892 ACAAAGATAGAATGGCAGGTCTT 57.815 39.130 8.60 3.45 0.00 3.01
3513 4519 5.251764 ACATCATCTGAAAAGAGAAGTGGG 58.748 41.667 0.00 0.00 0.00 4.61
3704 4711 7.668469 TGCTAGACCATCGAACTATTTATAGGA 59.332 37.037 0.00 0.00 34.69 2.94
3828 4836 2.476686 CGGTGCTGTGAATAGTTGCATG 60.477 50.000 0.00 0.00 36.04 4.06
3864 4872 4.037923 AGCACTTTCACATTTGGGTACTTG 59.962 41.667 0.00 0.00 0.00 3.16
3927 4935 4.692228 TCAAATCAAGGGCACAAGAAAAC 58.308 39.130 0.00 0.00 0.00 2.43
4001 5009 1.494721 TGGGTTCCAGGGCAGATATTC 59.505 52.381 0.00 0.00 0.00 1.75
4052 5060 6.126038 TGGATACTAGAGGATCCTCAGACTTT 60.126 42.308 37.28 21.38 41.99 2.66
4080 5088 7.334171 CCCAAGTGAAAACTGAAAAGTTCAATT 59.666 33.333 0.00 0.00 38.42 2.32
4409 5420 7.445707 TGCACCAGAAACACAACTTTATATACA 59.554 33.333 0.00 0.00 0.00 2.29
4445 5456 7.220030 AGAATAGGTAATCATGATGTGTGACC 58.780 38.462 9.46 11.52 0.00 4.02
4585 5613 7.095355 ACACGTGAATACCTCTAAAAACATGTC 60.095 37.037 25.01 0.00 0.00 3.06
4875 5910 9.932207 AGCTGATCAATTATGAACAAAATTCAA 57.068 25.926 0.00 0.00 37.82 2.69
4876 5911 9.932207 AAGCTGATCAATTATGAACAAAATTCA 57.068 25.926 0.00 0.00 37.82 2.57
4879 5914 9.715121 ACAAAGCTGATCAATTATGAACAAAAT 57.285 25.926 0.00 0.00 37.82 1.82
4880 5915 9.545105 AACAAAGCTGATCAATTATGAACAAAA 57.455 25.926 0.00 0.00 37.82 2.44
4889 5924 9.979578 AACAACATTAACAAAGCTGATCAATTA 57.020 25.926 0.00 0.00 0.00 1.40
4890 5925 8.767085 CAACAACATTAACAAAGCTGATCAATT 58.233 29.630 0.00 0.00 0.00 2.32
4891 5926 8.143193 TCAACAACATTAACAAAGCTGATCAAT 58.857 29.630 0.00 0.00 0.00 2.57
4892 5927 7.487484 TCAACAACATTAACAAAGCTGATCAA 58.513 30.769 0.00 0.00 0.00 2.57
4893 5928 7.036996 TCAACAACATTAACAAAGCTGATCA 57.963 32.000 0.00 0.00 0.00 2.92
4894 5929 7.809331 TCATCAACAACATTAACAAAGCTGATC 59.191 33.333 0.00 0.00 0.00 2.92
4895 5930 7.660112 TCATCAACAACATTAACAAAGCTGAT 58.340 30.769 0.00 0.00 0.00 2.90
4896 5931 7.036996 TCATCAACAACATTAACAAAGCTGA 57.963 32.000 0.00 0.00 0.00 4.26
4908 5943 4.771577 TGGTTGGCTATTCATCAACAACAT 59.228 37.500 0.00 0.00 41.59 2.71
4917 5952 5.603170 CCAAGAAATGGTTGGCTATTCAT 57.397 39.130 0.00 0.00 44.85 2.57
4939 5974 6.073276 GGTTTCATTTAATCCAGCACAAAACC 60.073 38.462 0.00 0.00 36.31 3.27
4963 5998 6.038356 GGACAAGTCAGCAATAAAATGATGG 58.962 40.000 2.29 0.00 37.32 3.51
4972 6007 4.098914 ACAAAGGGACAAGTCAGCAATA 57.901 40.909 2.29 0.00 0.00 1.90
5010 6047 6.621316 TTAGCTTCTCTATGAACTACCTCG 57.379 41.667 0.00 0.00 0.00 4.63
5023 6060 9.920946 TGTTGGGATAATTTTATTAGCTTCTCT 57.079 29.630 0.00 0.00 0.00 3.10
5034 6071 9.802039 AGTTAGACTGTTGTTGGGATAATTTTA 57.198 29.630 0.00 0.00 0.00 1.52
5145 6185 8.687292 AAAGCTATCATTCTGCAGATAATTCA 57.313 30.769 19.04 0.75 0.00 2.57
5146 6186 8.235905 GGAAAGCTATCATTCTGCAGATAATTC 58.764 37.037 19.04 10.64 0.00 2.17
5152 6192 4.492494 TGGAAAGCTATCATTCTGCAGA 57.508 40.909 13.74 13.74 0.00 4.26
5169 6209 7.141100 GCAAGTAAAATGCTACTACTTGGAA 57.859 36.000 18.04 0.00 46.60 3.53
5204 6247 3.861840 TGCAACTAGCTACTTCCACATC 58.138 45.455 0.00 0.00 45.94 3.06
5210 6253 2.924290 CGAACCTGCAACTAGCTACTTC 59.076 50.000 0.00 0.00 45.94 3.01
5302 6350 8.044060 TGTCATTATCTAGCACAAAAGAAAGG 57.956 34.615 0.00 0.00 0.00 3.11
5390 6438 3.374764 TGAGAGGCCTAATCAAGTGCTA 58.625 45.455 16.03 0.00 0.00 3.49
5479 6527 6.713903 ACTCCTATGCAACATAGGATGAATTG 59.286 38.462 28.03 20.01 46.38 2.32
5490 6538 3.610040 TCGACAACTCCTATGCAACAT 57.390 42.857 0.00 0.00 0.00 2.71
5579 6627 2.903375 GGTTAACCAATACCCACCCA 57.097 50.000 20.12 0.00 35.64 4.51
5613 6661 3.377172 CGTTTCTATGGGGCCTTTTACAG 59.623 47.826 0.84 0.00 0.00 2.74
5673 6734 1.557099 TCCCACGAAGATGCTACTGT 58.443 50.000 0.00 0.00 0.00 3.55
5745 6807 9.953565 ATAATGCAAACAGGAGTAGTAACTAAA 57.046 29.630 0.00 0.00 35.56 1.85
5747 6809 8.537016 ACATAATGCAAACAGGAGTAGTAACTA 58.463 33.333 0.00 0.00 35.56 2.24
5755 6817 6.319658 CAGGATAACATAATGCAAACAGGAGT 59.680 38.462 0.00 0.00 0.00 3.85
5756 6818 6.319658 ACAGGATAACATAATGCAAACAGGAG 59.680 38.462 0.00 0.00 0.00 3.69
5757 6819 6.186957 ACAGGATAACATAATGCAAACAGGA 58.813 36.000 0.00 0.00 0.00 3.86
5759 6821 7.201461 GCAAACAGGATAACATAATGCAAACAG 60.201 37.037 0.00 0.00 0.00 3.16
5761 6823 6.237542 CGCAAACAGGATAACATAATGCAAAC 60.238 38.462 0.00 0.00 0.00 2.93
5762 6824 5.804473 CGCAAACAGGATAACATAATGCAAA 59.196 36.000 0.00 0.00 0.00 3.68
5763 6825 5.339177 CGCAAACAGGATAACATAATGCAA 58.661 37.500 0.00 0.00 0.00 4.08
5764 6826 4.733230 GCGCAAACAGGATAACATAATGCA 60.733 41.667 0.30 0.00 0.00 3.96
5765 6827 3.730715 GCGCAAACAGGATAACATAATGC 59.269 43.478 0.30 0.00 0.00 3.56
5766 6828 3.968096 CGCGCAAACAGGATAACATAATG 59.032 43.478 8.75 0.00 0.00 1.90
5767 6829 3.003275 CCGCGCAAACAGGATAACATAAT 59.997 43.478 8.75 0.00 0.00 1.28
5801 6897 2.348059 TGCAGAAAAGCAAAACAAAGCG 59.652 40.909 0.00 0.00 42.46 4.68
5802 6898 3.786489 GCTGCAGAAAAGCAAAACAAAGC 60.786 43.478 20.43 0.00 45.13 3.51
5803 6899 3.931824 GCTGCAGAAAAGCAAAACAAAG 58.068 40.909 20.43 0.00 45.13 2.77
5813 6909 7.544566 ACATCATAAGAATTTGCTGCAGAAAAG 59.455 33.333 23.92 9.60 0.00 2.27
5814 6910 7.380536 ACATCATAAGAATTTGCTGCAGAAAA 58.619 30.769 22.17 22.17 0.00 2.29
5815 6911 6.927416 ACATCATAAGAATTTGCTGCAGAAA 58.073 32.000 20.43 11.53 0.00 2.52
5816 6912 6.519679 ACATCATAAGAATTTGCTGCAGAA 57.480 33.333 20.43 2.96 0.00 3.02
5817 6913 6.405065 GGAACATCATAAGAATTTGCTGCAGA 60.405 38.462 20.43 0.00 0.00 4.26
5818 6914 5.747197 GGAACATCATAAGAATTTGCTGCAG 59.253 40.000 10.11 10.11 0.00 4.41
5819 6915 5.394443 GGGAACATCATAAGAATTTGCTGCA 60.394 40.000 0.00 0.00 0.00 4.41
5820 6916 5.045872 GGGAACATCATAAGAATTTGCTGC 58.954 41.667 0.00 0.00 0.00 5.25
5821 6917 6.461110 AGGGAACATCATAAGAATTTGCTG 57.539 37.500 0.00 0.00 0.00 4.41
5822 6918 5.297776 CGAGGGAACATCATAAGAATTTGCT 59.702 40.000 0.00 0.00 0.00 3.91
5823 6919 5.066505 ACGAGGGAACATCATAAGAATTTGC 59.933 40.000 0.00 0.00 0.00 3.68
5824 6920 6.316140 TCACGAGGGAACATCATAAGAATTTG 59.684 38.462 0.00 0.00 0.00 2.32
5825 6921 6.414732 TCACGAGGGAACATCATAAGAATTT 58.585 36.000 0.00 0.00 0.00 1.82
5826 6922 5.989477 TCACGAGGGAACATCATAAGAATT 58.011 37.500 0.00 0.00 0.00 2.17
5827 6923 5.363868 TCTCACGAGGGAACATCATAAGAAT 59.636 40.000 0.00 0.00 0.00 2.40
5828 6924 4.709886 TCTCACGAGGGAACATCATAAGAA 59.290 41.667 0.00 0.00 0.00 2.52
5829 6925 4.278310 TCTCACGAGGGAACATCATAAGA 58.722 43.478 0.00 0.00 0.00 2.10
5830 6926 4.655762 TCTCACGAGGGAACATCATAAG 57.344 45.455 0.00 0.00 0.00 1.73
5831 6927 5.046591 AGTTTCTCACGAGGGAACATCATAA 60.047 40.000 0.00 0.00 31.76 1.90
5832 6928 4.466370 AGTTTCTCACGAGGGAACATCATA 59.534 41.667 0.00 0.00 31.76 2.15
5833 6929 3.261897 AGTTTCTCACGAGGGAACATCAT 59.738 43.478 0.00 0.00 31.76 2.45
5834 6930 2.632996 AGTTTCTCACGAGGGAACATCA 59.367 45.455 0.00 0.00 31.76 3.07
5835 6931 3.320673 AGTTTCTCACGAGGGAACATC 57.679 47.619 0.00 0.00 31.76 3.06
5836 6932 3.833070 ACTAGTTTCTCACGAGGGAACAT 59.167 43.478 0.00 0.00 32.51 2.71
5837 6933 3.228453 ACTAGTTTCTCACGAGGGAACA 58.772 45.455 0.00 0.00 32.51 3.18
5838 6934 3.938289 ACTAGTTTCTCACGAGGGAAC 57.062 47.619 0.00 0.99 32.51 3.62
5839 6935 5.771666 TCTTTACTAGTTTCTCACGAGGGAA 59.228 40.000 0.00 0.00 32.51 3.97
5840 6936 5.319453 TCTTTACTAGTTTCTCACGAGGGA 58.681 41.667 0.00 0.00 32.51 4.20
5841 6937 5.640189 TCTTTACTAGTTTCTCACGAGGG 57.360 43.478 0.00 0.00 32.51 4.30
5842 6938 9.239002 CATAATCTTTACTAGTTTCTCACGAGG 57.761 37.037 0.00 0.00 32.51 4.63
5845 6941 9.790389 ACTCATAATCTTTACTAGTTTCTCACG 57.210 33.333 0.00 0.00 0.00 4.35
5850 6946 9.974750 GCAACACTCATAATCTTTACTAGTTTC 57.025 33.333 0.00 0.00 0.00 2.78
5851 6947 9.502091 TGCAACACTCATAATCTTTACTAGTTT 57.498 29.630 0.00 0.00 0.00 2.66
6023 7138 5.696724 AGCGAAACGAGGGAGATATTTTATG 59.303 40.000 0.00 0.00 0.00 1.90
6030 7145 2.621998 CCTTAGCGAAACGAGGGAGATA 59.378 50.000 0.00 0.00 0.00 1.98
6124 7243 0.818040 AAGTCGTGGTGAAGTTGGCC 60.818 55.000 0.00 0.00 0.00 5.36
6125 7244 0.586802 GAAGTCGTGGTGAAGTTGGC 59.413 55.000 0.00 0.00 0.00 4.52
6126 7245 1.948104 TGAAGTCGTGGTGAAGTTGG 58.052 50.000 0.00 0.00 0.00 3.77
6127 7246 4.282068 CATTTGAAGTCGTGGTGAAGTTG 58.718 43.478 0.00 0.00 0.00 3.16
6128 7247 3.315191 CCATTTGAAGTCGTGGTGAAGTT 59.685 43.478 0.00 0.00 0.00 2.66
6129 7248 2.878406 CCATTTGAAGTCGTGGTGAAGT 59.122 45.455 0.00 0.00 0.00 3.01
6130 7249 3.138304 TCCATTTGAAGTCGTGGTGAAG 58.862 45.455 0.00 0.00 33.47 3.02
6131 7250 3.201353 TCCATTTGAAGTCGTGGTGAA 57.799 42.857 0.00 0.00 33.47 3.18
6132 7251 2.920724 TCCATTTGAAGTCGTGGTGA 57.079 45.000 0.00 0.00 33.47 4.02
6133 7252 2.813754 ACATCCATTTGAAGTCGTGGTG 59.186 45.455 0.00 0.00 33.47 4.17
6134 7253 3.074412 GACATCCATTTGAAGTCGTGGT 58.926 45.455 0.00 0.00 32.58 4.16
6135 7254 2.420022 GGACATCCATTTGAAGTCGTGG 59.580 50.000 0.00 0.00 41.53 4.94
6136 7255 2.094258 CGGACATCCATTTGAAGTCGTG 59.906 50.000 0.00 0.00 41.53 4.35
6137 7256 2.346803 CGGACATCCATTTGAAGTCGT 58.653 47.619 0.00 0.00 41.53 4.34
6138 7257 1.665679 CCGGACATCCATTTGAAGTCG 59.334 52.381 0.00 0.00 41.53 4.18
6139 7258 2.711542 ACCGGACATCCATTTGAAGTC 58.288 47.619 9.46 0.00 40.23 3.01
6140 7259 2.879103 ACCGGACATCCATTTGAAGT 57.121 45.000 9.46 0.00 35.14 3.01
6141 7260 3.367292 CCAAACCGGACATCCATTTGAAG 60.367 47.826 9.46 6.45 41.05 3.02
6142 7261 2.560542 CCAAACCGGACATCCATTTGAA 59.439 45.455 9.46 0.00 41.05 2.69
6143 7262 2.166829 CCAAACCGGACATCCATTTGA 58.833 47.619 9.46 0.00 41.05 2.69
6144 7263 1.404047 GCCAAACCGGACATCCATTTG 60.404 52.381 9.46 6.45 39.56 2.32
6145 7264 0.894835 GCCAAACCGGACATCCATTT 59.105 50.000 9.46 0.00 36.56 2.32
6146 7265 0.039618 AGCCAAACCGGACATCCATT 59.960 50.000 9.46 0.00 36.56 3.16
6147 7266 0.680921 CAGCCAAACCGGACATCCAT 60.681 55.000 9.46 0.00 36.56 3.41
6148 7267 1.303236 CAGCCAAACCGGACATCCA 60.303 57.895 9.46 0.00 36.56 3.41
6149 7268 2.046285 CCAGCCAAACCGGACATCC 61.046 63.158 9.46 0.00 36.56 3.51
6150 7269 0.394352 ATCCAGCCAAACCGGACATC 60.394 55.000 9.46 0.00 36.56 3.06
6151 7270 0.039618 AATCCAGCCAAACCGGACAT 59.960 50.000 9.46 0.00 36.56 3.06
6152 7271 0.178975 AAATCCAGCCAAACCGGACA 60.179 50.000 9.46 0.00 36.56 4.02
6153 7272 0.966179 AAAATCCAGCCAAACCGGAC 59.034 50.000 9.46 0.00 36.56 4.79
6154 7273 0.965439 CAAAATCCAGCCAAACCGGA 59.035 50.000 9.46 0.00 36.56 5.14
6155 7274 0.678950 ACAAAATCCAGCCAAACCGG 59.321 50.000 0.00 0.00 38.11 5.28
6156 7275 2.064573 GACAAAATCCAGCCAAACCG 57.935 50.000 0.00 0.00 0.00 4.44
6166 7285 2.352715 CCGCCTCAAAAGGACAAAATCC 60.353 50.000 0.00 0.00 46.67 3.01
6167 7286 2.926586 GCCGCCTCAAAAGGACAAAATC 60.927 50.000 0.00 0.00 46.67 2.17
6168 7287 1.000843 GCCGCCTCAAAAGGACAAAAT 59.999 47.619 0.00 0.00 46.67 1.82
6169 7288 0.387565 GCCGCCTCAAAAGGACAAAA 59.612 50.000 0.00 0.00 46.67 2.44
6170 7289 0.753479 TGCCGCCTCAAAAGGACAAA 60.753 50.000 0.00 0.00 46.67 2.83
6171 7290 0.753479 TTGCCGCCTCAAAAGGACAA 60.753 50.000 0.00 0.00 46.67 3.18
6172 7291 0.539438 ATTGCCGCCTCAAAAGGACA 60.539 50.000 0.00 0.00 46.67 4.02
6173 7292 0.109132 CATTGCCGCCTCAAAAGGAC 60.109 55.000 0.00 0.00 46.67 3.85
6174 7293 1.250154 CCATTGCCGCCTCAAAAGGA 61.250 55.000 0.00 0.00 46.67 3.36
6175 7294 1.216178 CCATTGCCGCCTCAAAAGG 59.784 57.895 0.00 0.00 46.44 3.11
6176 7295 1.216178 CCCATTGCCGCCTCAAAAG 59.784 57.895 0.00 0.00 0.00 2.27
6177 7296 1.118356 AACCCATTGCCGCCTCAAAA 61.118 50.000 0.00 0.00 0.00 2.44
6178 7297 1.531739 GAACCCATTGCCGCCTCAAA 61.532 55.000 0.00 0.00 0.00 2.69
6179 7298 1.976474 GAACCCATTGCCGCCTCAA 60.976 57.895 0.00 0.00 0.00 3.02
6180 7299 2.361104 GAACCCATTGCCGCCTCA 60.361 61.111 0.00 0.00 0.00 3.86
6181 7300 3.508840 CGAACCCATTGCCGCCTC 61.509 66.667 0.00 0.00 0.00 4.70
6193 7312 1.001393 TCAAAGGGATGGGCGAACC 60.001 57.895 0.00 0.00 40.81 3.62
6194 7313 1.032114 CCTCAAAGGGATGGGCGAAC 61.032 60.000 0.00 0.00 0.00 3.95
6195 7314 1.302949 CCTCAAAGGGATGGGCGAA 59.697 57.895 0.00 0.00 0.00 4.70
6196 7315 2.998097 CCTCAAAGGGATGGGCGA 59.002 61.111 0.00 0.00 0.00 5.54
6197 7316 2.830370 GCCTCAAAGGGATGGGCG 60.830 66.667 0.00 0.00 35.37 6.13
6198 7317 2.830370 CGCCTCAAAGGGATGGGC 60.830 66.667 0.00 0.00 35.37 5.36
6199 7318 2.124151 CCGCCTCAAAGGGATGGG 60.124 66.667 0.00 0.00 35.37 4.00
6200 7319 2.830370 GCCGCCTCAAAGGGATGG 60.830 66.667 0.00 0.00 35.37 3.51
6201 7320 1.039233 ATTGCCGCCTCAAAGGGATG 61.039 55.000 0.00 0.00 35.37 3.51
6202 7321 1.039233 CATTGCCGCCTCAAAGGGAT 61.039 55.000 0.00 0.00 35.37 3.85
6203 7322 1.678635 CATTGCCGCCTCAAAGGGA 60.679 57.895 0.00 0.00 35.37 4.20
6204 7323 2.713967 CCATTGCCGCCTCAAAGGG 61.714 63.158 0.00 0.00 35.37 3.95
6205 7324 2.713967 CCCATTGCCGCCTCAAAGG 61.714 63.158 1.20 1.20 38.80 3.11
6206 7325 1.535204 AACCCATTGCCGCCTCAAAG 61.535 55.000 0.00 0.00 0.00 2.77
6207 7326 1.531739 GAACCCATTGCCGCCTCAAA 61.532 55.000 0.00 0.00 0.00 2.69
6208 7327 1.976474 GAACCCATTGCCGCCTCAA 60.976 57.895 0.00 0.00 0.00 3.02
6209 7328 2.361104 GAACCCATTGCCGCCTCA 60.361 61.111 0.00 0.00 0.00 3.86
6210 7329 3.508840 CGAACCCATTGCCGCCTC 61.509 66.667 0.00 0.00 0.00 4.70
6222 7341 1.009335 GAACAAACACGGGCGAACC 60.009 57.895 0.00 0.00 0.00 3.62
6223 7342 0.379316 AAGAACAAACACGGGCGAAC 59.621 50.000 0.00 0.00 0.00 3.95
6224 7343 0.378962 CAAGAACAAACACGGGCGAA 59.621 50.000 0.00 0.00 0.00 4.70
6225 7344 0.745128 ACAAGAACAAACACGGGCGA 60.745 50.000 0.00 0.00 0.00 5.54
6226 7345 0.316689 GACAAGAACAAACACGGGCG 60.317 55.000 0.00 0.00 0.00 6.13
6227 7346 1.021968 AGACAAGAACAAACACGGGC 58.978 50.000 0.00 0.00 0.00 6.13
6228 7347 2.014128 ACAGACAAGAACAAACACGGG 58.986 47.619 0.00 0.00 0.00 5.28
6229 7348 3.425404 CAACAGACAAGAACAAACACGG 58.575 45.455 0.00 0.00 0.00 4.94
6230 7349 3.126171 TCCAACAGACAAGAACAAACACG 59.874 43.478 0.00 0.00 0.00 4.49
6231 7350 4.695217 TCCAACAGACAAGAACAAACAC 57.305 40.909 0.00 0.00 0.00 3.32
6232 7351 4.035091 CGATCCAACAGACAAGAACAAACA 59.965 41.667 0.00 0.00 0.00 2.83
6233 7352 4.035208 ACGATCCAACAGACAAGAACAAAC 59.965 41.667 0.00 0.00 0.00 2.93
6234 7353 4.035091 CACGATCCAACAGACAAGAACAAA 59.965 41.667 0.00 0.00 0.00 2.83
6235 7354 3.559655 CACGATCCAACAGACAAGAACAA 59.440 43.478 0.00 0.00 0.00 2.83
6236 7355 3.130633 CACGATCCAACAGACAAGAACA 58.869 45.455 0.00 0.00 0.00 3.18
6237 7356 2.096218 GCACGATCCAACAGACAAGAAC 60.096 50.000 0.00 0.00 0.00 3.01
6238 7357 2.143122 GCACGATCCAACAGACAAGAA 58.857 47.619 0.00 0.00 0.00 2.52
6239 7358 1.795768 GCACGATCCAACAGACAAGA 58.204 50.000 0.00 0.00 0.00 3.02
6240 7359 0.439985 CGCACGATCCAACAGACAAG 59.560 55.000 0.00 0.00 0.00 3.16
6241 7360 0.249699 ACGCACGATCCAACAGACAA 60.250 50.000 0.00 0.00 0.00 3.18
6242 7361 0.943835 CACGCACGATCCAACAGACA 60.944 55.000 0.00 0.00 0.00 3.41
6243 7362 1.781555 CACGCACGATCCAACAGAC 59.218 57.895 0.00 0.00 0.00 3.51
6244 7363 2.027073 GCACGCACGATCCAACAGA 61.027 57.895 0.00 0.00 0.00 3.41
6245 7364 2.316867 TGCACGCACGATCCAACAG 61.317 57.895 0.00 0.00 0.00 3.16
6246 7365 2.280457 TGCACGCACGATCCAACA 60.280 55.556 0.00 0.00 0.00 3.33
6247 7366 2.173382 GTGCACGCACGATCCAAC 59.827 61.111 6.38 0.00 37.19 3.77
6273 7392 1.748879 ATGATTTGGGGTGCGACCG 60.749 57.895 0.00 0.00 39.83 4.79
6274 7393 0.965363 ACATGATTTGGGGTGCGACC 60.965 55.000 0.00 0.00 37.60 4.79
6275 7394 0.451783 GACATGATTTGGGGTGCGAC 59.548 55.000 0.00 0.00 0.00 5.19
6276 7395 0.679640 GGACATGATTTGGGGTGCGA 60.680 55.000 0.00 0.00 0.00 5.10
6277 7396 1.809207 GGACATGATTTGGGGTGCG 59.191 57.895 0.00 0.00 0.00 5.34
6278 7397 0.965363 ACGGACATGATTTGGGGTGC 60.965 55.000 0.00 0.00 0.00 5.01
6279 7398 0.810648 CACGGACATGATTTGGGGTG 59.189 55.000 0.00 0.00 0.00 4.61
6280 7399 0.404040 ACACGGACATGATTTGGGGT 59.596 50.000 0.00 0.00 0.00 4.95
6281 7400 1.202114 CAACACGGACATGATTTGGGG 59.798 52.381 0.00 0.00 0.00 4.96
6282 7401 1.202114 CCAACACGGACATGATTTGGG 59.798 52.381 0.00 0.00 36.56 4.12
6283 7402 2.158559 TCCAACACGGACATGATTTGG 58.841 47.619 0.00 2.82 39.64 3.28
6294 7413 2.736995 ACGCACGATCCAACACGG 60.737 61.111 0.00 0.00 0.00 4.94
6295 7414 2.469847 CACGCACGATCCAACACG 59.530 61.111 0.00 0.00 0.00 4.49
6296 7415 2.173382 GCACGCACGATCCAACAC 59.827 61.111 0.00 0.00 0.00 3.32
6297 7416 3.410516 CGCACGCACGATCCAACA 61.411 61.111 0.00 0.00 34.06 3.33
6298 7417 4.794241 GCGCACGCACGATCCAAC 62.794 66.667 10.65 0.00 41.49 3.77
6301 7420 4.865761 TAGGCGCACGCACGATCC 62.866 66.667 17.69 0.00 44.11 3.36
6302 7421 3.617538 GTAGGCGCACGCACGATC 61.618 66.667 17.69 0.00 44.11 3.69
6322 7441 3.168237 GATTTGGGGTGCGATCGCG 62.168 63.158 32.64 0.00 45.51 5.87
6323 7442 1.447317 ATGATTTGGGGTGCGATCGC 61.447 55.000 32.48 32.48 42.35 4.58
6324 7443 0.308684 CATGATTTGGGGTGCGATCG 59.691 55.000 11.69 11.69 0.00 3.69
6325 7444 1.334869 GACATGATTTGGGGTGCGATC 59.665 52.381 0.00 0.00 0.00 3.69
6326 7445 1.392589 GACATGATTTGGGGTGCGAT 58.607 50.000 0.00 0.00 0.00 4.58
6327 7446 0.679640 GGACATGATTTGGGGTGCGA 60.680 55.000 0.00 0.00 0.00 5.10
6328 7447 1.809207 GGACATGATTTGGGGTGCG 59.191 57.895 0.00 0.00 0.00 5.34
6329 7448 1.809207 CGGACATGATTTGGGGTGC 59.191 57.895 0.00 0.00 0.00 5.01
6330 7449 0.964860 TGCGGACATGATTTGGGGTG 60.965 55.000 0.00 0.00 0.00 4.61
6331 7450 0.033208 ATGCGGACATGATTTGGGGT 60.033 50.000 0.00 0.00 34.35 4.95
6332 7451 1.113788 AATGCGGACATGATTTGGGG 58.886 50.000 0.00 0.00 36.36 4.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.