Multiple sequence alignment - TraesCS2B01G361900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G361900 chr2B 100.000 4504 0 0 1 4504 514864761 514869264 0.000000e+00 8318.0
1 TraesCS2B01G361900 chr2B 84.197 386 41 15 1203 1572 30333220 30332839 1.540000e-94 357.0
2 TraesCS2B01G361900 chr2B 96.923 65 2 0 1656 1720 321689902 321689838 4.760000e-20 110.0
3 TraesCS2B01G361900 chr2B 95.161 62 3 0 1656 1717 264582632 264582693 1.030000e-16 99.0
4 TraesCS2B01G361900 chr2A 90.347 2538 154 42 1743 4232 550538123 550535629 0.000000e+00 3245.0
5 TraesCS2B01G361900 chr2A 95.371 1469 56 9 121 1587 550539839 550538381 0.000000e+00 2326.0
6 TraesCS2B01G361900 chr2A 97.531 162 4 0 4247 4408 113822462 113822301 1.230000e-70 278.0
7 TraesCS2B01G361900 chr2A 87.550 249 18 6 4267 4504 405558287 405558533 4.440000e-70 276.0
8 TraesCS2B01G361900 chr2A 96.429 112 2 1 4393 4504 588196394 588196285 2.770000e-42 183.0
9 TraesCS2B01G361900 chr2D 92.541 2239 122 30 1716 3933 436368217 436366003 0.000000e+00 3168.0
10 TraesCS2B01G361900 chr2D 93.504 1601 68 21 2 1585 436369854 436368273 0.000000e+00 2348.0
11 TraesCS2B01G361900 chr2D 87.132 272 29 6 4008 4277 436365875 436365608 2.040000e-78 303.0
12 TraesCS2B01G361900 chr2D 89.706 68 3 2 1656 1719 49876806 49876873 2.890000e-12 84.2
13 TraesCS2B01G361900 chr2D 95.918 49 2 0 1672 1720 392523923 392523971 3.730000e-11 80.5
14 TraesCS2B01G361900 chr2D 100.000 33 0 0 1646 1678 645728699 645728667 1.350000e-05 62.1
15 TraesCS2B01G361900 chr6A 76.586 867 149 35 2087 2933 384968278 384967446 1.160000e-115 427.0
16 TraesCS2B01G361900 chr6A 90.608 181 15 2 3051 3230 384967352 384967173 5.820000e-59 239.0
17 TraesCS2B01G361900 chr6A 97.297 111 0 2 4396 4504 108670954 108670845 7.690000e-43 185.0
18 TraesCS2B01G361900 chr6A 96.396 111 4 0 4394 4504 354076438 354076328 2.770000e-42 183.0
19 TraesCS2B01G361900 chr6D 76.511 877 145 44 2081 2933 271006902 271007741 5.390000e-114 422.0
20 TraesCS2B01G361900 chr6D 90.608 181 15 2 3051 3230 271007835 271008014 5.820000e-59 239.0
21 TraesCS2B01G361900 chr6B 75.949 869 157 35 2084 2933 431701626 431702461 2.520000e-107 399.0
22 TraesCS2B01G361900 chr6B 89.503 181 17 2 3051 3230 431702555 431702734 1.260000e-55 228.0
23 TraesCS2B01G361900 chr5B 83.422 374 33 17 1203 1548 649446537 649446165 2.020000e-83 320.0
24 TraesCS2B01G361900 chr5B 97.468 158 4 0 4251 4408 64265973 64265816 2.060000e-68 270.0
25 TraesCS2B01G361900 chr5B 96.774 62 2 0 1656 1717 390710510 390710571 2.220000e-18 104.0
26 TraesCS2B01G361900 chr5B 98.000 50 1 0 1672 1721 477498475 477498426 2.230000e-13 87.9
27 TraesCS2B01G361900 chr3B 97.576 165 4 0 4244 4408 805433110 805433274 2.650000e-72 283.0
28 TraesCS2B01G361900 chr7B 97.531 162 4 0 4247 4408 537509166 537509327 1.230000e-70 278.0
29 TraesCS2B01G361900 chr7B 98.101 158 3 0 4251 4408 215365514 215365671 4.440000e-70 276.0
30 TraesCS2B01G361900 chr7B 99.048 105 0 1 4401 4504 180405113 180405009 2.140000e-43 187.0
31 TraesCS2B01G361900 chr4A 98.101 158 3 0 4251 4408 610810747 610810904 4.440000e-70 276.0
32 TraesCS2B01G361900 chr4A 99.038 104 0 1 4401 4504 379744167 379744269 7.690000e-43 185.0
33 TraesCS2B01G361900 chr1B 97.516 161 4 0 4248 4408 107923413 107923253 4.440000e-70 276.0
34 TraesCS2B01G361900 chr1B 96.429 112 3 1 4394 4504 561036461 561036350 2.770000e-42 183.0
35 TraesCS2B01G361900 chr1B 94.118 119 7 0 4386 4504 435694231 435694113 9.950000e-42 182.0
36 TraesCS2B01G361900 chr1B 95.918 49 2 0 1672 1720 607690211 607690259 3.730000e-11 80.5
37 TraesCS2B01G361900 chr1A 95.808 167 7 0 4242 4408 526575513 526575679 2.060000e-68 270.0
38 TraesCS2B01G361900 chr1A 95.652 115 3 2 4390 4504 130376602 130376714 2.770000e-42 183.0
39 TraesCS2B01G361900 chr1A 95.455 66 1 1 1656 1719 381297406 381297341 2.220000e-18 104.0
40 TraesCS2B01G361900 chr1A 91.176 68 2 2 1656 1719 40230909 40230842 6.210000e-14 89.8
41 TraesCS2B01G361900 chr1A 97.674 43 1 0 1677 1719 48977209 48977251 1.740000e-09 75.0
42 TraesCS2B01G361900 chr1A 97.674 43 1 0 1678 1720 560878582 560878540 1.740000e-09 75.0
43 TraesCS2B01G361900 chr1D 90.323 62 6 0 1656 1717 411783275 411783214 1.040000e-11 82.4
44 TraesCS2B01G361900 chr1D 89.231 65 3 2 1656 1719 403375946 403375885 1.340000e-10 78.7
45 TraesCS2B01G361900 chr1D 95.349 43 2 0 1677 1719 488844781 488844823 8.080000e-08 69.4
46 TraesCS2B01G361900 chr1D 97.436 39 1 0 1681 1719 19312173 19312211 2.910000e-07 67.6
47 TraesCS2B01G361900 chr1D 88.889 45 4 1 1680 1723 166822552 166822596 2.000000e-03 54.7
48 TraesCS2B01G361900 chr4D 95.918 49 2 0 1672 1720 485409390 485409438 3.730000e-11 80.5
49 TraesCS2B01G361900 chr4D 95.455 44 2 0 1677 1720 3748008 3748051 2.250000e-08 71.3
50 TraesCS2B01G361900 chr4D 95.349 43 2 0 1677 1719 24455845 24455887 8.080000e-08 69.4
51 TraesCS2B01G361900 chr4B 97.826 46 1 0 1675 1720 437940421 437940376 3.730000e-11 80.5
52 TraesCS2B01G361900 chrUn 97.778 45 1 0 1675 1719 224653351 224653307 1.340000e-10 78.7
53 TraesCS2B01G361900 chrUn 91.667 48 4 0 1672 1719 41907462 41907509 2.910000e-07 67.6
54 TraesCS2B01G361900 chrUn 100.000 29 0 0 912 940 20368142 20368170 2.000000e-03 54.7
55 TraesCS2B01G361900 chrUn 100.000 29 0 0 1650 1678 83145088 83145116 2.000000e-03 54.7
56 TraesCS2B01G361900 chrUn 100.000 29 0 0 1650 1678 83173734 83173762 2.000000e-03 54.7
57 TraesCS2B01G361900 chrUn 100.000 29 0 0 1650 1678 331430391 331430363 2.000000e-03 54.7
58 TraesCS2B01G361900 chrUn 100.000 29 0 0 1650 1678 332318156 332318128 2.000000e-03 54.7
59 TraesCS2B01G361900 chr3D 92.453 53 3 1 1675 1726 605333042 605332990 1.740000e-09 75.0
60 TraesCS2B01G361900 chr7D 97.561 41 1 0 1679 1719 188809814 188809774 2.250000e-08 71.3
61 TraesCS2B01G361900 chr7A 96.970 33 1 0 1643 1675 540005191 540005223 6.290000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G361900 chr2B 514864761 514869264 4503 False 8318.000000 8318 100.0000 1 4504 1 chr2B.!!$F2 4503
1 TraesCS2B01G361900 chr2A 550535629 550539839 4210 True 2785.500000 3245 92.8590 121 4232 2 chr2A.!!$R3 4111
2 TraesCS2B01G361900 chr2D 436365608 436369854 4246 True 1939.666667 3168 91.0590 2 4277 3 chr2D.!!$R2 4275
3 TraesCS2B01G361900 chr6A 384967173 384968278 1105 True 333.000000 427 83.5970 2087 3230 2 chr6A.!!$R3 1143
4 TraesCS2B01G361900 chr6D 271006902 271008014 1112 False 330.500000 422 83.5595 2081 3230 2 chr6D.!!$F1 1149
5 TraesCS2B01G361900 chr6B 431701626 431702734 1108 False 313.500000 399 82.7260 2084 3230 2 chr6B.!!$F1 1146

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
710 715 0.250770 GGAAGGGTTTCAGCGAAGGT 60.251 55.0 0.00 0.00 41.48 3.50 F
1147 1159 0.171903 AGTGAAATCCGACGGTACCG 59.828 55.0 32.22 32.22 46.03 4.02 F
2052 2247 0.247894 TGCGTTGTGTTCGTTCTTGC 60.248 50.0 0.00 0.00 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2034 2229 0.928451 GGCAAGAACGAACACAACGC 60.928 55.000 0.00 0.0 0.0 4.84 R
2814 3064 1.004918 AGGTGCGTCTACAACCTGC 60.005 57.895 4.18 0.0 0.0 4.85 R
3516 3781 0.250901 GAGCTGCTCCAAACCTCCAA 60.251 55.000 18.80 0.0 0.0 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 5.615925 AGTGAACAACTAGAGAACCTTGT 57.384 39.130 0.00 0.00 37.36 3.16
58 59 6.415573 AGTGAACAACTAGAGAACCTTGTTT 58.584 36.000 0.00 0.00 38.47 2.83
67 68 7.676947 ACTAGAGAACCTTGTTTGCACTAATA 58.323 34.615 0.00 0.00 0.00 0.98
68 69 8.154856 ACTAGAGAACCTTGTTTGCACTAATAA 58.845 33.333 0.00 0.00 0.00 1.40
69 70 9.167311 CTAGAGAACCTTGTTTGCACTAATAAT 57.833 33.333 0.00 0.00 0.00 1.28
70 71 8.409358 AGAGAACCTTGTTTGCACTAATAATT 57.591 30.769 0.00 0.00 0.00 1.40
71 72 9.515226 AGAGAACCTTGTTTGCACTAATAATTA 57.485 29.630 0.00 0.00 0.00 1.40
102 103 1.064166 CAATGAGACCTTGCCCCTCAT 60.064 52.381 0.00 0.00 46.23 2.90
106 107 4.115199 ACCTTGCCCCTCATCCGC 62.115 66.667 0.00 0.00 0.00 5.54
109 110 3.338250 TTGCCCCTCATCCGCCTT 61.338 61.111 0.00 0.00 0.00 4.35
123 128 1.480954 CCGCCTTACAGTCACATAGGT 59.519 52.381 0.00 0.00 0.00 3.08
702 707 1.001393 GCCATCGGGAAGGGTTTCA 60.001 57.895 0.00 0.00 34.90 2.69
710 715 0.250770 GGAAGGGTTTCAGCGAAGGT 60.251 55.000 0.00 0.00 41.48 3.50
747 753 1.376037 GGACGAAACTGGAGCTGGG 60.376 63.158 0.00 0.00 0.00 4.45
834 840 4.189188 AGATCGCGAACGGACGGG 62.189 66.667 15.24 12.54 45.12 5.28
905 912 1.826385 AAATTCTTGAGCTCACGGGG 58.174 50.000 18.03 7.35 0.00 5.73
914 921 0.253327 AGCTCACGGGGAAATCCTTC 59.747 55.000 0.00 0.00 35.95 3.46
943 950 1.381599 CTGCTCTGCTCTCTCCCCT 60.382 63.158 0.00 0.00 0.00 4.79
949 956 2.108075 CTCTGCTCTCTCCCCTCATCTA 59.892 54.545 0.00 0.00 0.00 1.98
1140 1152 2.785258 GCCGCAGTGAAATCCGAC 59.215 61.111 0.00 0.00 0.00 4.79
1147 1159 0.171903 AGTGAAATCCGACGGTACCG 59.828 55.000 32.22 32.22 46.03 4.02
1179 1191 0.741326 TCCTCGAATCTGCTTCCTCG 59.259 55.000 0.00 0.00 0.00 4.63
1229 1241 2.415168 TCGATCCGATGTGCTTGTTTTC 59.585 45.455 0.00 0.00 0.00 2.29
1355 1367 1.980156 GAAGTTCGACGAGAAGTGAGC 59.020 52.381 0.00 0.00 41.41 4.26
1366 1378 1.064017 AGAAGTGAGCGGATCTCTCCT 60.064 52.381 11.25 0.00 42.38 3.69
1380 1392 5.395879 GGATCTCTCCTGTCTACCCTTTTTC 60.396 48.000 0.00 0.00 38.65 2.29
1381 1393 4.489737 TCTCTCCTGTCTACCCTTTTTCA 58.510 43.478 0.00 0.00 0.00 2.69
1382 1394 4.283722 TCTCTCCTGTCTACCCTTTTTCAC 59.716 45.833 0.00 0.00 0.00 3.18
1421 1434 8.262933 GGCTACTTTCTAGGGTTTCAAATACTA 58.737 37.037 0.00 0.00 0.00 1.82
1449 1462 7.080099 GCCGTCGATACATCTAACATAGTTTA 58.920 38.462 0.00 0.00 0.00 2.01
1494 1507 2.420058 ATTTAGCCCTGAGAAACCCG 57.580 50.000 0.00 0.00 0.00 5.28
1502 1515 2.175184 CTGAGAAACCCGCAGCGTTG 62.175 60.000 15.05 7.06 35.96 4.10
1512 1525 2.816958 CAGCGTTGCGAGCTCCAT 60.817 61.111 8.47 0.00 44.06 3.41
1548 1565 8.084073 GTGGAATTCTTCATTTGTTCTTGATGA 58.916 33.333 5.23 0.00 0.00 2.92
1549 1566 8.084073 TGGAATTCTTCATTTGTTCTTGATGAC 58.916 33.333 5.23 0.00 30.10 3.06
1550 1567 8.084073 GGAATTCTTCATTTGTTCTTGATGACA 58.916 33.333 5.23 0.00 30.10 3.58
1552 1569 6.940831 TCTTCATTTGTTCTTGATGACACA 57.059 33.333 0.00 0.00 30.10 3.72
1553 1570 6.728200 TCTTCATTTGTTCTTGATGACACAC 58.272 36.000 0.00 0.00 30.10 3.82
1554 1571 5.437289 TCATTTGTTCTTGATGACACACC 57.563 39.130 0.00 0.00 0.00 4.16
1557 1574 3.558931 TGTTCTTGATGACACACCTGT 57.441 42.857 0.00 0.00 0.00 4.00
1558 1575 3.884895 TGTTCTTGATGACACACCTGTT 58.115 40.909 0.00 0.00 0.00 3.16
1559 1576 3.627123 TGTTCTTGATGACACACCTGTTG 59.373 43.478 0.00 0.00 0.00 3.33
1560 1577 3.558931 TCTTGATGACACACCTGTTGT 57.441 42.857 0.00 0.00 39.97 3.32
1564 1581 5.184864 TCTTGATGACACACCTGTTGTTTTT 59.815 36.000 0.00 0.00 35.67 1.94
1616 1633 7.312657 TGTGGAGTACTAACTAGTATTCACG 57.687 40.000 16.64 0.00 43.33 4.35
1659 1676 9.807649 ATTTGGATGTCTTGCAAAATATTACTC 57.192 29.630 9.03 0.00 46.84 2.59
1660 1677 7.333528 TGGATGTCTTGCAAAATATTACTCC 57.666 36.000 0.00 0.13 0.00 3.85
1661 1678 6.321181 TGGATGTCTTGCAAAATATTACTCCC 59.679 38.462 0.00 0.00 0.00 4.30
1662 1679 6.547510 GGATGTCTTGCAAAATATTACTCCCT 59.452 38.462 0.00 0.00 0.00 4.20
1663 1680 7.255277 GGATGTCTTGCAAAATATTACTCCCTC 60.255 40.741 0.00 0.00 0.00 4.30
1664 1681 6.721318 TGTCTTGCAAAATATTACTCCCTCT 58.279 36.000 0.00 0.00 0.00 3.69
1665 1682 6.599244 TGTCTTGCAAAATATTACTCCCTCTG 59.401 38.462 0.00 0.00 0.00 3.35
1666 1683 6.599638 GTCTTGCAAAATATTACTCCCTCTGT 59.400 38.462 0.00 0.00 0.00 3.41
1667 1684 6.823689 TCTTGCAAAATATTACTCCCTCTGTC 59.176 38.462 0.00 0.00 0.00 3.51
1668 1685 5.437060 TGCAAAATATTACTCCCTCTGTCC 58.563 41.667 0.00 0.00 0.00 4.02
1669 1686 4.822350 GCAAAATATTACTCCCTCTGTCCC 59.178 45.833 0.00 0.00 0.00 4.46
1670 1687 5.631481 GCAAAATATTACTCCCTCTGTCCCA 60.631 44.000 0.00 0.00 0.00 4.37
1671 1688 6.605119 CAAAATATTACTCCCTCTGTCCCAT 58.395 40.000 0.00 0.00 0.00 4.00
1672 1689 7.691791 GCAAAATATTACTCCCTCTGTCCCATA 60.692 40.741 0.00 0.00 0.00 2.74
1673 1690 7.947782 AAATATTACTCCCTCTGTCCCATAA 57.052 36.000 0.00 0.00 0.00 1.90
1674 1691 8.525729 AAATATTACTCCCTCTGTCCCATAAT 57.474 34.615 0.00 0.00 0.00 1.28
1675 1692 5.832539 ATTACTCCCTCTGTCCCATAATG 57.167 43.478 0.00 0.00 0.00 1.90
1676 1693 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
1677 1694 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
1678 1695 4.227197 ACTCCCTCTGTCCCATAATGTAG 58.773 47.826 0.00 0.00 0.00 2.74
1679 1696 4.227197 CTCCCTCTGTCCCATAATGTAGT 58.773 47.826 0.00 0.00 0.00 2.73
1680 1697 3.967326 TCCCTCTGTCCCATAATGTAGTG 59.033 47.826 0.00 0.00 0.00 2.74
1681 1698 3.711704 CCCTCTGTCCCATAATGTAGTGT 59.288 47.826 0.00 0.00 0.00 3.55
1682 1699 4.202264 CCCTCTGTCCCATAATGTAGTGTC 60.202 50.000 0.00 0.00 0.00 3.67
1683 1700 4.405680 CCTCTGTCCCATAATGTAGTGTCA 59.594 45.833 0.00 0.00 0.00 3.58
1684 1701 5.104941 CCTCTGTCCCATAATGTAGTGTCAA 60.105 44.000 0.00 0.00 0.00 3.18
1685 1702 6.367374 TCTGTCCCATAATGTAGTGTCAAA 57.633 37.500 0.00 0.00 0.00 2.69
1686 1703 6.774673 TCTGTCCCATAATGTAGTGTCAAAA 58.225 36.000 0.00 0.00 0.00 2.44
1687 1704 7.227873 TCTGTCCCATAATGTAGTGTCAAAAA 58.772 34.615 0.00 0.00 0.00 1.94
1775 1970 8.632906 AATGAGATATGAAGGGAATGCTAAAG 57.367 34.615 0.00 0.00 0.00 1.85
1825 2020 6.139671 ACAACCATCTAGATCAGTAGTGGAT 58.860 40.000 12.23 0.00 31.18 3.41
1831 2026 2.937519 AGATCAGTAGTGGATCAGCGA 58.062 47.619 0.00 0.00 42.84 4.93
1890 2085 5.413309 AATCACTGATCTCGAGAAAGGTT 57.587 39.130 20.91 12.90 0.00 3.50
1911 2106 4.818534 TTGCAGTTTAAGCAGTCAGAAG 57.181 40.909 0.00 0.00 43.75 2.85
1938 2133 4.151121 TCTGCAAAGATTGTTCCATTCCA 58.849 39.130 0.00 0.00 0.00 3.53
1995 2190 6.821388 ACTCTGAACTTCTGAAGTGTATTGT 58.179 36.000 22.67 15.59 41.91 2.71
2007 2202 7.559897 TCTGAAGTGTATTGTTTCTTTTTCCCT 59.440 33.333 0.00 0.00 0.00 4.20
2034 2229 7.541091 CCTTCTGTTTCATCTGATTTCACATTG 59.459 37.037 0.00 0.00 0.00 2.82
2040 2235 4.216042 TCATCTGATTTCACATTGCGTTGT 59.784 37.500 0.00 0.00 0.00 3.32
2052 2247 0.247894 TGCGTTGTGTTCGTTCTTGC 60.248 50.000 0.00 0.00 0.00 4.01
2075 2274 7.445121 TGCCTTCTACTGATTAATATCACCTG 58.555 38.462 0.00 0.00 35.87 4.00
2077 2276 7.386299 GCCTTCTACTGATTAATATCACCTGTG 59.614 40.741 0.00 0.00 35.87 3.66
2179 2378 3.244770 ACTTCATAAGGGTTGGCGAGAAA 60.245 43.478 0.00 0.00 0.00 2.52
2234 2444 5.527951 TCTTAGGTTGTCGTTGCATGTTTTA 59.472 36.000 0.00 0.00 0.00 1.52
2505 2754 2.157738 CTGAGCAACTTCCTTTCCTGG 58.842 52.381 0.00 0.00 0.00 4.45
2736 2985 5.407387 GCGTATCTCTGAAACAAAAGGTACA 59.593 40.000 0.00 0.00 0.00 2.90
2767 3016 3.470709 TGTCTCCTTCAAGTCTGCTTTG 58.529 45.455 0.00 0.00 31.49 2.77
2796 3045 7.901322 AGCTTGAATGTAGATATAGGATACCCA 59.099 37.037 0.00 0.00 33.88 4.51
2936 3186 6.403866 TTTTGTGGCATTCTGTAAGTGAAT 57.596 33.333 0.00 0.00 34.82 2.57
3035 3286 7.256691 GGGTTAGCTCCTTGGATTTCTCATATA 60.257 40.741 0.00 0.00 0.00 0.86
3099 3350 2.572191 TAGACCGATACTTGCAACCG 57.428 50.000 0.00 0.00 0.00 4.44
3153 3404 4.038162 ACTGTTGTCTACTCACAGTTCCTC 59.962 45.833 10.92 0.00 38.33 3.71
3293 3558 5.537295 ACTGGTGCTTATACCGTGTATGATA 59.463 40.000 6.77 0.00 43.87 2.15
3317 3582 4.497473 TTGATGTGGCTAACCTTTTTCG 57.503 40.909 0.00 0.00 36.63 3.46
3322 3587 0.800631 GGCTAACCTTTTTCGTCCCG 59.199 55.000 0.00 0.00 0.00 5.14
3449 3714 0.036952 ACCAGTCGACCATCAAGCAG 60.037 55.000 13.01 0.00 0.00 4.24
3516 3781 3.118038 TGACCTGTAGGCTTTCTTTGTGT 60.118 43.478 0.00 0.00 39.32 3.72
3593 3859 1.133668 AGACTTTGCTTTGGCTCCTGT 60.134 47.619 0.00 0.00 39.59 4.00
3637 3903 2.214347 TGCGTTTCAGATCGGTCAAAA 58.786 42.857 0.00 0.00 0.00 2.44
3644 3910 3.674997 TCAGATCGGTCAAAAGGAAAGG 58.325 45.455 0.00 0.00 0.00 3.11
3647 3913 0.848053 TCGGTCAAAAGGAAAGGGGT 59.152 50.000 0.00 0.00 0.00 4.95
3648 3914 2.056359 TCGGTCAAAAGGAAAGGGGTA 58.944 47.619 0.00 0.00 0.00 3.69
3649 3915 2.039348 TCGGTCAAAAGGAAAGGGGTAG 59.961 50.000 0.00 0.00 0.00 3.18
3721 3996 3.259123 AGGGAATTGCAGACCATTGTTTC 59.741 43.478 0.00 0.00 0.00 2.78
3748 4023 3.885901 TGGTTGTTTCCACGATGAATTCA 59.114 39.130 11.26 11.26 31.96 2.57
3797 4072 4.320275 CCAGCGTTTTACCTTTCTTCCTTC 60.320 45.833 0.00 0.00 0.00 3.46
3888 4165 1.615392 GCACCAGCAAAAGTGAGGAAT 59.385 47.619 0.00 0.00 41.58 3.01
3915 4192 6.494893 AGATTGCACAAGCGTTTCTAATTA 57.505 33.333 0.00 0.00 46.23 1.40
3916 4193 6.908825 AGATTGCACAAGCGTTTCTAATTAA 58.091 32.000 0.00 0.00 46.23 1.40
3941 4248 3.531538 TCCTCTTTCATGACGCCAATAC 58.468 45.455 0.00 0.00 0.00 1.89
3962 4269 3.769844 ACATATCTGACGTTCCCTGAAGT 59.230 43.478 0.00 0.00 0.00 3.01
3969 4276 4.091549 TGACGTTCCCTGAAGTAGGTATT 58.908 43.478 0.00 0.00 45.80 1.89
3995 4303 5.650543 ACAGATGAAAGTTTTTGTTCGCTT 58.349 33.333 0.00 0.00 0.00 4.68
3996 4304 6.099341 ACAGATGAAAGTTTTTGTTCGCTTT 58.901 32.000 0.00 0.00 34.34 3.51
3997 4305 7.254852 ACAGATGAAAGTTTTTGTTCGCTTTA 58.745 30.769 0.00 0.00 32.14 1.85
4001 4309 9.194716 GATGAAAGTTTTTGTTCGCTTTAAAAC 57.805 29.630 0.00 0.00 39.53 2.43
4003 4311 8.004905 TGAAAGTTTTTGTTCGCTTTAAAACAC 58.995 29.630 0.00 0.00 40.90 3.32
4030 4361 1.536766 TGAACGCTTCAGAATTGCCAG 59.463 47.619 0.00 0.00 34.08 4.85
4033 4364 0.449388 CGCTTCAGAATTGCCAGGTC 59.551 55.000 0.00 0.00 0.00 3.85
4054 4386 6.947733 AGGTCAAACAGATGAATTTACCATGA 59.052 34.615 0.00 0.00 0.00 3.07
4063 4395 7.430211 CAGATGAATTTACCATGACGTTGAATG 59.570 37.037 0.00 0.00 0.00 2.67
4156 4489 5.735070 GCTGCATGAGAATAATTGTCATGCA 60.735 40.000 34.01 34.01 37.72 3.96
4161 4495 8.273557 GCATGAGAATAATTGTCATGCATTTTC 58.726 33.333 31.30 12.32 37.72 2.29
4163 4497 9.878667 ATGAGAATAATTGTCATGCATTTTCAA 57.121 25.926 0.00 3.41 37.72 2.69
4195 4529 4.025015 GATGCAAACATCGAGAATTGCT 57.975 40.909 23.57 14.10 46.27 3.91
4196 4530 3.206034 TGCAAACATCGAGAATTGCTG 57.794 42.857 23.57 6.01 46.27 4.41
4198 4532 2.095059 GCAAACATCGAGAATTGCTGGT 60.095 45.455 18.90 0.00 43.58 4.00
4200 4534 2.029838 ACATCGAGAATTGCTGGTCC 57.970 50.000 0.00 0.00 0.00 4.46
4204 4538 2.857483 TCGAGAATTGCTGGTCCAAAA 58.143 42.857 0.00 0.00 0.00 2.44
4205 4539 3.420893 TCGAGAATTGCTGGTCCAAAAT 58.579 40.909 0.00 0.00 0.00 1.82
4206 4540 3.191162 TCGAGAATTGCTGGTCCAAAATG 59.809 43.478 0.00 0.00 0.00 2.32
4211 4545 6.355747 AGAATTGCTGGTCCAAAATGAAAAA 58.644 32.000 0.00 0.00 0.00 1.94
4220 4554 6.039159 TGGTCCAAAATGAAAAAGAAAATGGC 59.961 34.615 0.00 0.00 0.00 4.40
4237 4571 3.084536 TGGCAAGAATTACCATGCTCA 57.915 42.857 0.00 0.00 36.35 4.26
4238 4572 3.018856 TGGCAAGAATTACCATGCTCAG 58.981 45.455 0.00 0.00 36.35 3.35
4262 4596 0.907704 TGCCATGTACTCCCTCCGTT 60.908 55.000 0.00 0.00 0.00 4.44
4264 4598 0.464452 CCATGTACTCCCTCCGTTCC 59.536 60.000 0.00 0.00 0.00 3.62
4265 4599 1.486211 CATGTACTCCCTCCGTTCCT 58.514 55.000 0.00 0.00 0.00 3.36
4277 4611 4.161754 CCCTCCGTTCCTAAATACTTGTCT 59.838 45.833 0.00 0.00 0.00 3.41
4278 4612 5.338137 CCCTCCGTTCCTAAATACTTGTCTT 60.338 44.000 0.00 0.00 0.00 3.01
4279 4613 6.171213 CCTCCGTTCCTAAATACTTGTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
4280 4614 6.313164 CCTCCGTTCCTAAATACTTGTCTTTC 59.687 42.308 0.00 0.00 0.00 2.62
4281 4615 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
4282 4616 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
4283 4617 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
4284 4618 7.491696 CCGTTCCTAAATACTTGTCTTTCTAGG 59.508 40.741 0.00 0.00 0.00 3.02
4285 4619 7.010275 CGTTCCTAAATACTTGTCTTTCTAGGC 59.990 40.741 0.00 0.00 0.00 3.93
4286 4620 7.490657 TCCTAAATACTTGTCTTTCTAGGCA 57.509 36.000 0.00 0.00 33.22 4.75
4287 4621 8.090788 TCCTAAATACTTGTCTTTCTAGGCAT 57.909 34.615 0.00 0.00 35.56 4.40
4288 4622 8.548877 TCCTAAATACTTGTCTTTCTAGGCATT 58.451 33.333 0.00 0.00 35.56 3.56
4289 4623 9.178758 CCTAAATACTTGTCTTTCTAGGCATTT 57.821 33.333 0.00 0.00 35.56 2.32
4296 4630 9.696917 ACTTGTCTTTCTAGGCATTTAAAATTG 57.303 29.630 0.00 0.00 35.56 2.32
4297 4631 9.912634 CTTGTCTTTCTAGGCATTTAAAATTGA 57.087 29.630 0.00 0.00 35.56 2.57
4298 4632 9.691362 TTGTCTTTCTAGGCATTTAAAATTGAC 57.309 29.630 0.00 0.00 35.56 3.18
4299 4633 9.077885 TGTCTTTCTAGGCATTTAAAATTGACT 57.922 29.630 2.80 2.80 34.88 3.41
4300 4634 9.561270 GTCTTTCTAGGCATTTAAAATTGACTC 57.439 33.333 0.31 0.00 32.22 3.36
4301 4635 9.295825 TCTTTCTAGGCATTTAAAATTGACTCA 57.704 29.630 0.31 0.00 32.22 3.41
4302 4636 9.912634 CTTTCTAGGCATTTAAAATTGACTCAA 57.087 29.630 0.31 0.00 32.22 3.02
4303 4637 9.691362 TTTCTAGGCATTTAAAATTGACTCAAC 57.309 29.630 0.31 0.00 32.22 3.18
4304 4638 8.402798 TCTAGGCATTTAAAATTGACTCAACA 57.597 30.769 0.31 0.00 32.22 3.33
4305 4639 9.023962 TCTAGGCATTTAAAATTGACTCAACAT 57.976 29.630 0.31 0.00 32.22 2.71
4307 4641 8.986477 AGGCATTTAAAATTGACTCAACATAC 57.014 30.769 0.00 0.00 0.00 2.39
4308 4642 7.754924 AGGCATTTAAAATTGACTCAACATACG 59.245 33.333 0.00 0.00 0.00 3.06
4309 4643 7.009174 GGCATTTAAAATTGACTCAACATACGG 59.991 37.037 0.00 0.00 0.00 4.02
4310 4644 7.753132 GCATTTAAAATTGACTCAACATACGGA 59.247 33.333 0.00 0.00 0.00 4.69
4311 4645 9.787532 CATTTAAAATTGACTCAACATACGGAT 57.212 29.630 0.00 0.00 0.00 4.18
4312 4646 9.787532 ATTTAAAATTGACTCAACATACGGATG 57.212 29.630 5.94 5.94 39.16 3.51
4314 4648 7.915293 AAAATTGACTCAACATACGGATGTA 57.085 32.000 15.10 0.00 45.93 2.29
4315 4649 8.506168 AAAATTGACTCAACATACGGATGTAT 57.494 30.769 15.10 0.00 45.93 2.29
4352 4686 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
4353 4687 6.882610 AAGTGTAGATTCACTCATTTTGCA 57.117 33.333 0.00 0.00 46.25 4.08
4354 4688 6.246420 AGTGTAGATTCACTCATTTTGCAC 57.754 37.500 0.00 0.00 44.07 4.57
4355 4689 5.182001 AGTGTAGATTCACTCATTTTGCACC 59.818 40.000 0.00 0.00 44.07 5.01
4356 4690 3.837213 AGATTCACTCATTTTGCACCG 57.163 42.857 0.00 0.00 0.00 4.94
4357 4691 3.149196 AGATTCACTCATTTTGCACCGT 58.851 40.909 0.00 0.00 0.00 4.83
4358 4692 4.323417 AGATTCACTCATTTTGCACCGTA 58.677 39.130 0.00 0.00 0.00 4.02
4359 4693 4.943705 AGATTCACTCATTTTGCACCGTAT 59.056 37.500 0.00 0.00 0.00 3.06
4360 4694 4.418013 TTCACTCATTTTGCACCGTATG 57.582 40.909 0.00 0.00 0.00 2.39
4361 4695 3.407698 TCACTCATTTTGCACCGTATGT 58.592 40.909 0.00 0.00 0.00 2.29
4362 4696 4.570930 TCACTCATTTTGCACCGTATGTA 58.429 39.130 0.00 0.00 0.00 2.29
4363 4697 4.629634 TCACTCATTTTGCACCGTATGTAG 59.370 41.667 0.00 0.00 0.00 2.74
4364 4698 4.391830 CACTCATTTTGCACCGTATGTAGT 59.608 41.667 0.00 0.00 0.00 2.73
4365 4699 4.630069 ACTCATTTTGCACCGTATGTAGTC 59.370 41.667 0.00 0.00 0.00 2.59
4366 4700 4.570930 TCATTTTGCACCGTATGTAGTCA 58.429 39.130 0.00 0.00 0.00 3.41
4367 4701 4.390603 TCATTTTGCACCGTATGTAGTCAC 59.609 41.667 0.00 0.00 0.00 3.67
4368 4702 3.671008 TTTGCACCGTATGTAGTCACT 57.329 42.857 0.00 0.00 0.00 3.41
4369 4703 3.671008 TTGCACCGTATGTAGTCACTT 57.329 42.857 0.00 0.00 0.00 3.16
4370 4704 2.954316 TGCACCGTATGTAGTCACTTG 58.046 47.619 0.00 0.00 0.00 3.16
4371 4705 2.297880 TGCACCGTATGTAGTCACTTGT 59.702 45.455 0.00 0.00 0.00 3.16
4372 4706 3.243941 TGCACCGTATGTAGTCACTTGTT 60.244 43.478 0.00 0.00 0.00 2.83
4373 4707 3.122948 GCACCGTATGTAGTCACTTGTTG 59.877 47.826 0.00 0.00 0.00 3.33
4374 4708 4.552355 CACCGTATGTAGTCACTTGTTGA 58.448 43.478 0.00 0.00 0.00 3.18
4375 4709 4.986034 CACCGTATGTAGTCACTTGTTGAA 59.014 41.667 0.00 0.00 35.39 2.69
4376 4710 5.464057 CACCGTATGTAGTCACTTGTTGAAA 59.536 40.000 0.00 0.00 35.39 2.69
4377 4711 6.147164 CACCGTATGTAGTCACTTGTTGAAAT 59.853 38.462 0.00 0.00 35.39 2.17
4378 4712 6.367969 ACCGTATGTAGTCACTTGTTGAAATC 59.632 38.462 0.00 0.00 35.39 2.17
4379 4713 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
4380 4714 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
4381 4715 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
4382 4716 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
4383 4717 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
4384 4718 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
4385 4719 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
4386 4720 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
4387 4721 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
4388 4722 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
4389 4723 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
4390 4724 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
4391 4725 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
4392 4726 9.050601 ACTTGTTGAAATCTCTAGAAAGACAAG 57.949 33.333 17.75 17.75 33.18 3.16
4393 4727 8.964476 TTGTTGAAATCTCTAGAAAGACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
4404 4738 9.291664 CTCTAGAAAGACAAGTATTTAGGAACG 57.708 37.037 0.00 0.00 0.00 3.95
4405 4739 8.248945 TCTAGAAAGACAAGTATTTAGGAACGG 58.751 37.037 0.00 0.00 0.00 4.44
4406 4740 7.001099 AGAAAGACAAGTATTTAGGAACGGA 57.999 36.000 0.00 0.00 0.00 4.69
4407 4741 7.097834 AGAAAGACAAGTATTTAGGAACGGAG 58.902 38.462 0.00 0.00 0.00 4.63
4409 4743 5.721232 AGACAAGTATTTAGGAACGGAGTG 58.279 41.667 0.00 0.00 45.00 3.51
4410 4744 5.245526 AGACAAGTATTTAGGAACGGAGTGT 59.754 40.000 0.00 0.00 45.00 3.55
4411 4745 5.476614 ACAAGTATTTAGGAACGGAGTGTC 58.523 41.667 0.00 0.00 45.00 3.67
4412 4746 5.011329 ACAAGTATTTAGGAACGGAGTGTCA 59.989 40.000 0.00 0.00 45.00 3.58
4413 4747 5.326200 AGTATTTAGGAACGGAGTGTCAG 57.674 43.478 0.00 0.00 45.00 3.51
4414 4748 3.611766 ATTTAGGAACGGAGTGTCAGG 57.388 47.619 0.00 0.00 45.00 3.86
4415 4749 2.297698 TTAGGAACGGAGTGTCAGGA 57.702 50.000 0.00 0.00 45.00 3.86
4416 4750 1.542492 TAGGAACGGAGTGTCAGGAC 58.458 55.000 0.00 0.00 45.00 3.85
4417 4751 1.186267 AGGAACGGAGTGTCAGGACC 61.186 60.000 0.00 0.00 45.00 4.46
4418 4752 1.292541 GAACGGAGTGTCAGGACCC 59.707 63.158 0.00 0.00 45.00 4.46
4419 4753 2.168666 GAACGGAGTGTCAGGACCCC 62.169 65.000 0.00 0.00 45.00 4.95
4420 4754 3.760035 CGGAGTGTCAGGACCCCG 61.760 72.222 9.44 9.44 33.83 5.73
4421 4755 2.283676 GGAGTGTCAGGACCCCGA 60.284 66.667 0.00 0.00 0.00 5.14
4422 4756 2.647158 GGAGTGTCAGGACCCCGAC 61.647 68.421 4.95 4.95 0.00 4.79
4423 4757 1.606889 GAGTGTCAGGACCCCGACT 60.607 63.158 11.80 0.00 31.80 4.18
4424 4758 1.596895 GAGTGTCAGGACCCCGACTC 61.597 65.000 11.80 8.77 31.80 3.36
4425 4759 2.675423 TGTCAGGACCCCGACTCG 60.675 66.667 11.80 0.00 31.80 4.18
4426 4760 2.360852 GTCAGGACCCCGACTCGA 60.361 66.667 0.00 0.00 0.00 4.04
4427 4761 1.753463 GTCAGGACCCCGACTCGAT 60.753 63.158 0.00 0.00 0.00 3.59
4428 4762 1.753078 TCAGGACCCCGACTCGATG 60.753 63.158 0.00 0.00 0.00 3.84
4429 4763 2.052690 CAGGACCCCGACTCGATGT 61.053 63.158 0.00 0.00 0.00 3.06
4430 4764 1.753463 AGGACCCCGACTCGATGTC 60.753 63.158 0.00 5.96 42.06 3.06
4431 4765 2.050350 GGACCCCGACTCGATGTCA 61.050 63.158 16.91 0.00 45.60 3.58
4432 4766 1.139095 GACCCCGACTCGATGTCAC 59.861 63.158 13.14 0.00 45.60 3.67
4433 4767 1.592400 GACCCCGACTCGATGTCACA 61.592 60.000 13.14 0.00 45.60 3.58
4434 4768 0.970937 ACCCCGACTCGATGTCACAT 60.971 55.000 13.14 0.00 45.60 3.21
4435 4769 0.249073 CCCCGACTCGATGTCACATC 60.249 60.000 7.83 7.83 45.60 3.06
4436 4770 0.592500 CCCGACTCGATGTCACATCG 60.593 60.000 30.60 30.60 45.60 3.84
4437 4771 0.377203 CCGACTCGATGTCACATCGA 59.623 55.000 34.63 34.63 46.69 3.59
4443 4777 3.544356 TCGATGTCACATCGATCTAGC 57.456 47.619 33.92 0.00 44.42 3.42
4444 4778 2.226674 TCGATGTCACATCGATCTAGCC 59.773 50.000 33.92 0.00 44.42 3.93
4445 4779 2.590073 GATGTCACATCGATCTAGCCG 58.410 52.381 0.93 0.00 0.00 5.52
4446 4780 0.668535 TGTCACATCGATCTAGCCGG 59.331 55.000 0.00 0.00 0.00 6.13
4447 4781 0.669077 GTCACATCGATCTAGCCGGT 59.331 55.000 1.90 0.00 0.00 5.28
4448 4782 1.878088 GTCACATCGATCTAGCCGGTA 59.122 52.381 1.90 0.00 0.00 4.02
4449 4783 2.292569 GTCACATCGATCTAGCCGGTAA 59.707 50.000 1.90 0.00 0.00 2.85
4450 4784 2.292569 TCACATCGATCTAGCCGGTAAC 59.707 50.000 1.90 0.00 0.00 2.50
4451 4785 2.034179 CACATCGATCTAGCCGGTAACA 59.966 50.000 1.90 0.00 0.00 2.41
4452 4786 2.034305 ACATCGATCTAGCCGGTAACAC 59.966 50.000 1.90 0.00 0.00 3.32
4453 4787 1.027357 TCGATCTAGCCGGTAACACC 58.973 55.000 1.90 0.00 34.05 4.16
4454 4788 1.030457 CGATCTAGCCGGTAACACCT 58.970 55.000 1.90 0.00 35.66 4.00
4455 4789 1.001597 CGATCTAGCCGGTAACACCTC 60.002 57.143 1.90 0.00 35.66 3.85
4456 4790 2.029623 GATCTAGCCGGTAACACCTCA 58.970 52.381 1.90 0.00 35.66 3.86
4457 4791 2.154567 TCTAGCCGGTAACACCTCAT 57.845 50.000 1.90 0.00 35.66 2.90
4458 4792 3.301794 TCTAGCCGGTAACACCTCATA 57.698 47.619 1.90 0.00 35.66 2.15
4459 4793 3.840991 TCTAGCCGGTAACACCTCATAT 58.159 45.455 1.90 0.00 35.66 1.78
4460 4794 3.825014 TCTAGCCGGTAACACCTCATATC 59.175 47.826 1.90 0.00 35.66 1.63
4461 4795 2.394632 AGCCGGTAACACCTCATATCA 58.605 47.619 1.90 0.00 35.66 2.15
4462 4796 2.102588 AGCCGGTAACACCTCATATCAC 59.897 50.000 1.90 0.00 35.66 3.06
4463 4797 2.102588 GCCGGTAACACCTCATATCACT 59.897 50.000 1.90 0.00 35.66 3.41
4464 4798 3.431766 GCCGGTAACACCTCATATCACTT 60.432 47.826 1.90 0.00 35.66 3.16
4465 4799 4.766375 CCGGTAACACCTCATATCACTTT 58.234 43.478 0.00 0.00 35.66 2.66
4466 4800 4.570772 CCGGTAACACCTCATATCACTTTG 59.429 45.833 0.00 0.00 35.66 2.77
4467 4801 4.034048 CGGTAACACCTCATATCACTTTGC 59.966 45.833 0.00 0.00 35.66 3.68
4468 4802 4.034048 GGTAACACCTCATATCACTTTGCG 59.966 45.833 0.00 0.00 34.73 4.85
4469 4803 2.632377 ACACCTCATATCACTTTGCGG 58.368 47.619 0.00 0.00 0.00 5.69
4470 4804 1.331756 CACCTCATATCACTTTGCGGC 59.668 52.381 0.00 0.00 0.00 6.53
4471 4805 0.947244 CCTCATATCACTTTGCGGCC 59.053 55.000 0.00 0.00 0.00 6.13
4472 4806 1.475751 CCTCATATCACTTTGCGGCCT 60.476 52.381 0.00 0.00 0.00 5.19
4473 4807 1.869767 CTCATATCACTTTGCGGCCTC 59.130 52.381 0.00 0.00 0.00 4.70
4474 4808 1.209261 TCATATCACTTTGCGGCCTCA 59.791 47.619 0.00 0.00 0.00 3.86
4475 4809 1.331756 CATATCACTTTGCGGCCTCAC 59.668 52.381 0.00 0.00 0.00 3.51
4476 4810 0.739462 TATCACTTTGCGGCCTCACG 60.739 55.000 0.00 0.00 0.00 4.35
4484 4818 4.508128 CGGCCTCACGCACGGTAT 62.508 66.667 0.00 0.00 40.31 2.73
4485 4819 2.585247 GGCCTCACGCACGGTATC 60.585 66.667 0.00 0.00 40.31 2.24
4486 4820 2.585247 GCCTCACGCACGGTATCC 60.585 66.667 0.00 0.00 37.47 2.59
4487 4821 2.106332 CCTCACGCACGGTATCCC 59.894 66.667 0.00 0.00 0.00 3.85
4488 4822 2.106332 CTCACGCACGGTATCCCC 59.894 66.667 0.00 0.00 0.00 4.81
4489 4823 2.680707 TCACGCACGGTATCCCCA 60.681 61.111 0.00 0.00 0.00 4.96
4490 4824 2.510691 CACGCACGGTATCCCCAC 60.511 66.667 0.00 0.00 0.00 4.61
4491 4825 4.137872 ACGCACGGTATCCCCACG 62.138 66.667 0.00 0.00 0.00 4.94
4492 4826 4.884257 CGCACGGTATCCCCACGG 62.884 72.222 0.00 0.00 0.00 4.94
4493 4827 4.540735 GCACGGTATCCCCACGGG 62.541 72.222 0.00 0.00 46.11 5.28
4494 4828 3.078836 CACGGTATCCCCACGGGT 61.079 66.667 0.41 0.00 44.74 5.28
4495 4829 3.078836 ACGGTATCCCCACGGGTG 61.079 66.667 0.41 0.00 44.74 4.61
4496 4830 3.078836 CGGTATCCCCACGGGTGT 61.079 66.667 0.41 0.00 44.74 4.16
4497 4831 2.905681 GGTATCCCCACGGGTGTC 59.094 66.667 0.41 0.00 44.74 3.67
4498 4832 2.497770 GTATCCCCACGGGTGTCG 59.502 66.667 0.41 0.00 44.74 4.35
4499 4833 3.463585 TATCCCCACGGGTGTCGC 61.464 66.667 0.41 0.00 44.74 5.19
4503 4837 3.697747 CCCACGGGTGTCGCCTTA 61.698 66.667 1.66 0.00 43.89 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.926674 TTTGATCTCTGCACATGAAAATCTA 57.073 32.000 0.00 0.00 0.00 1.98
67 68 9.533831 AAGGTCTCATTGGACTGTTAATTAATT 57.466 29.630 5.89 5.89 36.55 1.40
68 69 8.960591 CAAGGTCTCATTGGACTGTTAATTAAT 58.039 33.333 0.31 0.00 36.55 1.40
69 70 7.094377 GCAAGGTCTCATTGGACTGTTAATTAA 60.094 37.037 0.00 0.00 36.55 1.40
70 71 6.374333 GCAAGGTCTCATTGGACTGTTAATTA 59.626 38.462 5.60 0.00 36.55 1.40
71 72 5.183904 GCAAGGTCTCATTGGACTGTTAATT 59.816 40.000 5.60 0.00 36.55 1.40
72 73 4.702131 GCAAGGTCTCATTGGACTGTTAAT 59.298 41.667 5.60 0.00 36.55 1.40
73 74 4.072131 GCAAGGTCTCATTGGACTGTTAA 58.928 43.478 5.60 0.00 36.55 2.01
106 107 7.530010 CAATTGAAACCTATGTGACTGTAAGG 58.470 38.462 0.00 0.00 39.30 2.69
109 110 6.000840 TGCAATTGAAACCTATGTGACTGTA 58.999 36.000 10.34 0.00 0.00 2.74
726 731 0.671781 CAGCTCCAGTTTCGTCCCTG 60.672 60.000 0.00 0.00 0.00 4.45
794 800 2.270205 CTGTGCTGGGCGGAGAAT 59.730 61.111 0.00 0.00 0.00 2.40
834 840 2.228138 TCCACGTGTATTAATCCCGC 57.772 50.000 15.65 0.00 0.00 6.13
835 841 2.867975 GGTTCCACGTGTATTAATCCCG 59.132 50.000 15.65 0.00 0.00 5.14
836 842 3.875134 CTGGTTCCACGTGTATTAATCCC 59.125 47.826 15.65 3.37 0.00 3.85
894 901 0.253327 AAGGATTTCCCCGTGAGCTC 59.747 55.000 6.82 6.82 36.42 4.09
895 902 0.253327 GAAGGATTTCCCCGTGAGCT 59.747 55.000 0.00 0.00 36.42 4.09
905 912 2.771372 AGAGCAGAGGAGGAAGGATTTC 59.229 50.000 0.00 0.00 0.00 2.17
914 921 1.817881 CAGAGCAGAGCAGAGGAGG 59.182 63.158 0.00 0.00 0.00 4.30
943 950 1.134431 TGCTTCTGCCGCAATAGATGA 60.134 47.619 0.00 0.00 38.71 2.92
949 956 1.080298 GCTTTGCTTCTGCCGCAAT 60.080 52.632 0.00 0.00 45.67 3.56
973 980 4.863925 GCAGACTCGCCTCGCCTC 62.864 72.222 0.00 0.00 0.00 4.70
1014 1026 1.681666 CTGCTGCTTCCCTTCCTCA 59.318 57.895 0.00 0.00 0.00 3.86
1147 1159 3.471806 GAGGAGGAGGCGGGGTTC 61.472 72.222 0.00 0.00 0.00 3.62
1273 1285 2.107750 CGCGTCCATCTCCAGCAT 59.892 61.111 0.00 0.00 0.00 3.79
1355 1367 1.144093 AGGGTAGACAGGAGAGATCCG 59.856 57.143 0.00 0.00 34.28 4.18
1366 1378 2.762745 GAGCGTGAAAAAGGGTAGACA 58.237 47.619 0.00 0.00 0.00 3.41
1380 1392 1.324736 GTAGCCTGAAATTCGAGCGTG 59.675 52.381 2.16 0.00 0.00 5.34
1381 1393 1.204941 AGTAGCCTGAAATTCGAGCGT 59.795 47.619 2.16 0.00 0.00 5.07
1382 1394 1.927895 AGTAGCCTGAAATTCGAGCG 58.072 50.000 2.16 0.00 0.00 5.03
1421 1434 2.686405 TGTTAGATGTATCGACGGCAGT 59.314 45.455 0.00 0.00 0.00 4.40
1449 1462 7.623999 ATCACATAATCTATCTGGAGTGGTT 57.376 36.000 0.00 0.00 0.00 3.67
1469 1482 5.299531 GGGTTTCTCAGGGCTAAATTATCAC 59.700 44.000 0.00 0.00 0.00 3.06
1502 1515 3.246226 CACAATTACAGTATGGAGCTCGC 59.754 47.826 7.83 1.18 43.62 5.03
1590 1607 8.404000 CGTGAATACTAGTTAGTACTCCACAAT 58.596 37.037 0.00 0.00 41.18 2.71
1591 1608 7.627088 GCGTGAATACTAGTTAGTACTCCACAA 60.627 40.741 0.00 0.00 41.18 3.33
1592 1609 6.183360 GCGTGAATACTAGTTAGTACTCCACA 60.183 42.308 0.00 7.69 41.18 4.17
1593 1610 6.038050 AGCGTGAATACTAGTTAGTACTCCAC 59.962 42.308 0.00 0.00 41.18 4.02
1594 1611 6.118170 AGCGTGAATACTAGTTAGTACTCCA 58.882 40.000 0.00 1.18 41.18 3.86
1595 1612 6.616774 AGCGTGAATACTAGTTAGTACTCC 57.383 41.667 0.00 0.00 41.18 3.85
1596 1613 7.918643 AGAAGCGTGAATACTAGTTAGTACTC 58.081 38.462 0.00 1.59 41.18 2.59
1597 1614 7.862512 AGAAGCGTGAATACTAGTTAGTACT 57.137 36.000 0.00 0.00 41.18 2.73
1646 1663 4.822350 GGGACAGAGGGAGTAATATTTTGC 59.178 45.833 0.00 0.00 0.00 3.68
1647 1664 6.001449 TGGGACAGAGGGAGTAATATTTTG 57.999 41.667 0.00 0.00 0.00 2.44
1684 1701 8.934023 TCTGTCCCATAATGTAAGAAGTTTTT 57.066 30.769 0.00 0.00 0.00 1.94
1685 1702 7.611855 CCTCTGTCCCATAATGTAAGAAGTTTT 59.388 37.037 0.00 0.00 0.00 2.43
1686 1703 7.112779 CCTCTGTCCCATAATGTAAGAAGTTT 58.887 38.462 0.00 0.00 0.00 2.66
1687 1704 6.353082 CCCTCTGTCCCATAATGTAAGAAGTT 60.353 42.308 0.00 0.00 0.00 2.66
1688 1705 5.131142 CCCTCTGTCCCATAATGTAAGAAGT 59.869 44.000 0.00 0.00 0.00 3.01
1689 1706 5.366768 TCCCTCTGTCCCATAATGTAAGAAG 59.633 44.000 0.00 0.00 0.00 2.85
1690 1707 5.285401 TCCCTCTGTCCCATAATGTAAGAA 58.715 41.667 0.00 0.00 0.00 2.52
1691 1708 4.890988 TCCCTCTGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
1692 1709 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
1693 1710 4.631234 ACTCCCTCTGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
1694 1711 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
1695 1712 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
1696 1713 4.227197 ACTACTCCCTCTGTCCCATAATG 58.773 47.826 0.00 0.00 0.00 1.90
1697 1714 4.561254 ACTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
1698 1715 4.387211 GGTACTACTCCCTCTGTCCCATAA 60.387 50.000 0.00 0.00 0.00 1.90
1699 1716 3.139770 GGTACTACTCCCTCTGTCCCATA 59.860 52.174 0.00 0.00 0.00 2.74
1700 1717 2.091222 GGTACTACTCCCTCTGTCCCAT 60.091 54.545 0.00 0.00 0.00 4.00
1701 1718 1.287146 GGTACTACTCCCTCTGTCCCA 59.713 57.143 0.00 0.00 0.00 4.37
1702 1719 1.287146 TGGTACTACTCCCTCTGTCCC 59.713 57.143 0.00 0.00 0.00 4.46
1703 1720 2.822707 TGGTACTACTCCCTCTGTCC 57.177 55.000 0.00 0.00 0.00 4.02
1704 1721 5.678955 ATTTTGGTACTACTCCCTCTGTC 57.321 43.478 0.00 0.00 0.00 3.51
1705 1722 6.272558 AGAAATTTTGGTACTACTCCCTCTGT 59.727 38.462 0.00 0.00 0.00 3.41
1706 1723 6.712276 AGAAATTTTGGTACTACTCCCTCTG 58.288 40.000 0.00 0.00 0.00 3.35
1707 1724 6.954352 AGAAATTTTGGTACTACTCCCTCT 57.046 37.500 0.00 0.00 0.00 3.69
1708 1725 7.997773 AAAGAAATTTTGGTACTACTCCCTC 57.002 36.000 0.00 0.00 0.00 4.30
1709 1726 7.450634 GGAAAAGAAATTTTGGTACTACTCCCT 59.549 37.037 0.00 0.00 0.00 4.20
1710 1727 7.450634 AGGAAAAGAAATTTTGGTACTACTCCC 59.549 37.037 0.00 0.00 0.00 4.30
1711 1728 8.405418 AGGAAAAGAAATTTTGGTACTACTCC 57.595 34.615 0.00 0.00 0.00 3.85
1769 1964 5.183014 ACCTTAAACAAGCACACTTTAGC 57.817 39.130 0.00 0.00 32.29 3.09
1775 1970 5.744666 TCAGTAACCTTAAACAAGCACAC 57.255 39.130 0.00 0.00 0.00 3.82
1825 2020 7.803279 TTCTCTATTTACTATCAGTCGCTGA 57.197 36.000 11.12 11.12 44.99 4.26
1890 2085 4.199310 ACTTCTGACTGCTTAAACTGCAA 58.801 39.130 0.00 0.00 40.13 4.08
1938 2133 3.642848 AGAGCACACATTTTCATTTGGGT 59.357 39.130 0.00 0.00 0.00 4.51
1995 2190 5.955355 TGAAACAGAAGGAGGGAAAAAGAAA 59.045 36.000 0.00 0.00 0.00 2.52
2007 2202 6.298361 TGTGAAATCAGATGAAACAGAAGGA 58.702 36.000 0.00 0.00 0.00 3.36
2034 2229 0.928451 GGCAAGAACGAACACAACGC 60.928 55.000 0.00 0.00 0.00 4.84
2040 2235 3.069016 TCAGTAGAAGGCAAGAACGAACA 59.931 43.478 0.00 0.00 0.00 3.18
2052 2247 8.424918 ACACAGGTGATATTAATCAGTAGAAGG 58.575 37.037 6.40 0.00 42.80 3.46
2075 2274 2.157668 CCGCGATCCTTTATGCATACAC 59.842 50.000 8.23 0.00 0.00 2.90
2077 2276 2.683968 TCCGCGATCCTTTATGCATAC 58.316 47.619 8.23 0.00 0.00 2.39
2211 2421 3.896648 AACATGCAACGACAACCTAAG 57.103 42.857 0.00 0.00 0.00 2.18
2479 2714 6.825721 CAGGAAAGGAAGTTGCTCAGTATTAT 59.174 38.462 0.00 0.00 0.00 1.28
2505 2754 2.224314 CCCTCTTCAAACAAGCTTCGAC 59.776 50.000 0.00 0.00 0.00 4.20
2736 2985 7.986320 CAGACTTGAAGGAGACAAGATGAATAT 59.014 37.037 13.34 0.00 44.92 1.28
2788 3037 9.541143 CCAACATTATTGTTAAATTGGGTATCC 57.459 33.333 2.82 0.00 44.24 2.59
2789 3038 9.040939 GCCAACATTATTGTTAAATTGGGTATC 57.959 33.333 2.82 0.00 44.24 2.24
2791 3040 7.907389 TGCCAACATTATTGTTAAATTGGGTA 58.093 30.769 2.82 0.00 44.24 3.69
2792 3041 6.773638 TGCCAACATTATTGTTAAATTGGGT 58.226 32.000 2.82 0.00 44.24 4.51
2793 3042 6.315891 CCTGCCAACATTATTGTTAAATTGGG 59.684 38.462 2.82 1.39 44.24 4.12
2796 3045 7.936301 ACAACCTGCCAACATTATTGTTAAATT 59.064 29.630 2.82 0.00 44.24 1.82
2814 3064 1.004918 AGGTGCGTCTACAACCTGC 60.005 57.895 4.18 0.00 0.00 4.85
3049 3300 2.037136 CCGTCAGGCCAGCTGAAAG 61.037 63.158 17.39 0.00 32.15 2.62
3099 3350 2.111041 GCATGAAGTAGCGGAAATGC 57.889 50.000 0.00 0.00 34.28 3.56
3153 3404 3.120304 TCGTCACACTCTTGTATGACTCG 60.120 47.826 6.13 0.00 45.51 4.18
3269 3524 3.702548 TCATACACGGTATAAGCACCAGT 59.297 43.478 0.00 0.00 38.61 4.00
3278 3533 9.430623 CCACATCAATTTATCATACACGGTATA 57.569 33.333 0.00 0.00 0.00 1.47
3283 3538 6.304356 AGCCACATCAATTTATCATACACG 57.696 37.500 0.00 0.00 0.00 4.49
3293 3558 5.925969 CGAAAAAGGTTAGCCACATCAATTT 59.074 36.000 0.00 0.00 37.19 1.82
3322 3587 1.787847 CGTGACAATTCCCTGCGTC 59.212 57.895 0.00 0.00 0.00 5.19
3325 3590 0.598065 AAAGCGTGACAATTCCCTGC 59.402 50.000 0.00 0.00 0.00 4.85
3449 3714 1.472376 CGATTCAGCAGGAAGTCTCCC 60.472 57.143 0.00 0.00 43.64 4.30
3516 3781 0.250901 GAGCTGCTCCAAACCTCCAA 60.251 55.000 18.80 0.00 0.00 3.53
3553 3818 2.479566 TGCAAGGGAAGCTTGAGTAG 57.520 50.000 2.10 0.00 33.98 2.57
3593 3859 2.691409 GCAATACTGCCAGTACTCCA 57.309 50.000 6.73 0.00 43.26 3.86
3626 3892 2.092323 CCCCTTTCCTTTTGACCGATC 58.908 52.381 0.00 0.00 0.00 3.69
3721 3996 4.503910 TCATCGTGGAAACAACCATCTAG 58.496 43.478 0.00 0.00 46.06 2.43
3761 4036 3.518634 AACGCTGGTCACACAATTTTT 57.481 38.095 0.00 0.00 0.00 1.94
3763 4038 3.518634 AAAACGCTGGTCACACAATTT 57.481 38.095 0.00 0.00 0.00 1.82
3768 4043 1.589803 AGGTAAAACGCTGGTCACAC 58.410 50.000 0.00 0.00 0.00 3.82
3817 4092 7.945033 ACAGTTAGCACAAAATATTTGTTGG 57.055 32.000 0.39 0.00 0.00 3.77
3915 4192 4.780815 TGGCGTCATGAAAGAGGAATATT 58.219 39.130 0.00 0.00 0.00 1.28
3916 4193 4.422073 TGGCGTCATGAAAGAGGAATAT 57.578 40.909 0.00 0.00 0.00 1.28
3928 4205 4.090498 CGTCAGATATGTATTGGCGTCATG 59.910 45.833 0.00 0.00 35.41 3.07
3933 4240 3.428870 GGAACGTCAGATATGTATTGGCG 59.571 47.826 0.00 0.00 44.73 5.69
3941 4248 4.392921 ACTTCAGGGAACGTCAGATATG 57.607 45.455 0.00 0.00 0.00 1.78
3969 4276 5.514914 GCGAACAAAAACTTTCATCTGTTCA 59.485 36.000 11.87 0.00 41.62 3.18
3987 4295 5.741510 CACTGAATGTGTTTTAAAGCGAACA 59.258 36.000 0.00 0.00 41.53 3.18
3995 4303 5.493133 AGCGTTCACTGAATGTGTTTTAA 57.507 34.783 11.78 0.00 46.27 1.52
3996 4304 5.065346 TGAAGCGTTCACTGAATGTGTTTTA 59.935 36.000 11.78 1.10 46.27 1.52
3997 4305 4.142491 TGAAGCGTTCACTGAATGTGTTTT 60.142 37.500 11.78 3.45 46.27 2.43
4003 4311 4.675190 ATTCTGAAGCGTTCACTGAATG 57.325 40.909 6.62 6.62 34.92 2.67
4030 4361 7.029563 GTCATGGTAAATTCATCTGTTTGACC 58.970 38.462 0.00 0.00 0.00 4.02
4033 4364 6.611381 ACGTCATGGTAAATTCATCTGTTTG 58.389 36.000 0.00 0.00 0.00 2.93
4054 4386 7.706179 AGAACATGACAAATTTTCATTCAACGT 59.294 29.630 0.00 0.00 30.98 3.99
4063 4395 9.974980 TTTTACCCTAGAACATGACAAATTTTC 57.025 29.630 0.00 0.00 0.00 2.29
4156 4489 9.309516 GTTTGCATCATGACATATCTTGAAAAT 57.690 29.630 0.00 0.00 41.07 1.82
4195 4529 6.039159 GCCATTTTCTTTTTCATTTTGGACCA 59.961 34.615 0.00 0.00 0.00 4.02
4196 4530 6.039159 TGCCATTTTCTTTTTCATTTTGGACC 59.961 34.615 0.00 0.00 0.00 4.46
4198 4532 7.555554 TCTTGCCATTTTCTTTTTCATTTTGGA 59.444 29.630 0.00 0.00 0.00 3.53
4200 4534 9.738832 ATTCTTGCCATTTTCTTTTTCATTTTG 57.261 25.926 0.00 0.00 0.00 2.44
4204 4538 9.002600 GGTAATTCTTGCCATTTTCTTTTTCAT 57.997 29.630 0.00 0.00 35.27 2.57
4205 4539 7.989741 TGGTAATTCTTGCCATTTTCTTTTTCA 59.010 29.630 0.00 0.00 40.68 2.69
4206 4540 8.376889 TGGTAATTCTTGCCATTTTCTTTTTC 57.623 30.769 0.00 0.00 40.68 2.29
4220 4554 6.270815 CAAATCCTGAGCATGGTAATTCTTG 58.729 40.000 0.00 0.00 0.00 3.02
4237 4571 2.173569 GAGGGAGTACATGGCAAATCCT 59.826 50.000 4.37 4.11 35.26 3.24
4238 4572 2.576615 GAGGGAGTACATGGCAAATCC 58.423 52.381 0.00 0.10 0.00 3.01
4262 4596 7.490657 TGCCTAGAAAGACAAGTATTTAGGA 57.509 36.000 11.40 0.00 26.70 2.94
4277 4611 9.691362 GTTGAGTCAATTTTAAATGCCTAGAAA 57.309 29.630 9.18 0.00 0.00 2.52
4278 4612 8.855110 TGTTGAGTCAATTTTAAATGCCTAGAA 58.145 29.630 9.18 0.00 0.00 2.10
4279 4613 8.402798 TGTTGAGTCAATTTTAAATGCCTAGA 57.597 30.769 9.18 0.00 0.00 2.43
4282 4616 7.754924 CGTATGTTGAGTCAATTTTAAATGCCT 59.245 33.333 9.18 0.00 0.00 4.75
4283 4617 7.009174 CCGTATGTTGAGTCAATTTTAAATGCC 59.991 37.037 9.18 0.00 0.00 4.40
4284 4618 7.753132 TCCGTATGTTGAGTCAATTTTAAATGC 59.247 33.333 9.18 0.00 0.00 3.56
4285 4619 9.787532 ATCCGTATGTTGAGTCAATTTTAAATG 57.212 29.630 9.18 0.00 0.00 2.32
4286 4620 9.787532 CATCCGTATGTTGAGTCAATTTTAAAT 57.212 29.630 9.18 0.09 0.00 1.40
4287 4621 8.788806 ACATCCGTATGTTGAGTCAATTTTAAA 58.211 29.630 9.18 0.00 44.07 1.52
4288 4622 8.330466 ACATCCGTATGTTGAGTCAATTTTAA 57.670 30.769 9.18 0.00 44.07 1.52
4289 4623 7.915293 ACATCCGTATGTTGAGTCAATTTTA 57.085 32.000 9.18 0.00 44.07 1.52
4290 4624 6.817765 ACATCCGTATGTTGAGTCAATTTT 57.182 33.333 9.18 0.00 44.07 1.82
4291 4625 7.919690 CATACATCCGTATGTTGAGTCAATTT 58.080 34.615 9.18 2.43 46.70 1.82
4292 4626 7.482654 CATACATCCGTATGTTGAGTCAATT 57.517 36.000 9.18 2.79 46.70 2.32
4332 4666 5.393962 GGTGCAAAATGAGTGAATCTACAC 58.606 41.667 0.00 0.00 40.60 2.90
4333 4667 4.154015 CGGTGCAAAATGAGTGAATCTACA 59.846 41.667 0.00 0.00 0.00 2.74
4334 4668 4.154195 ACGGTGCAAAATGAGTGAATCTAC 59.846 41.667 0.00 0.00 0.00 2.59
4335 4669 4.323417 ACGGTGCAAAATGAGTGAATCTA 58.677 39.130 0.00 0.00 0.00 1.98
4336 4670 3.149196 ACGGTGCAAAATGAGTGAATCT 58.851 40.909 0.00 0.00 0.00 2.40
4337 4671 3.559238 ACGGTGCAAAATGAGTGAATC 57.441 42.857 0.00 0.00 0.00 2.52
4338 4672 4.458989 ACATACGGTGCAAAATGAGTGAAT 59.541 37.500 0.00 0.00 0.00 2.57
4339 4673 3.818210 ACATACGGTGCAAAATGAGTGAA 59.182 39.130 0.00 0.00 0.00 3.18
4340 4674 3.407698 ACATACGGTGCAAAATGAGTGA 58.592 40.909 0.00 0.00 0.00 3.41
4341 4675 3.829886 ACATACGGTGCAAAATGAGTG 57.170 42.857 0.00 0.00 0.00 3.51
4342 4676 4.575885 ACTACATACGGTGCAAAATGAGT 58.424 39.130 0.00 0.00 0.00 3.41
4343 4677 4.629634 TGACTACATACGGTGCAAAATGAG 59.370 41.667 0.00 0.00 0.00 2.90
4344 4678 4.390603 GTGACTACATACGGTGCAAAATGA 59.609 41.667 0.00 0.00 0.00 2.57
4345 4679 4.391830 AGTGACTACATACGGTGCAAAATG 59.608 41.667 0.00 0.00 0.00 2.32
4346 4680 4.575885 AGTGACTACATACGGTGCAAAAT 58.424 39.130 0.00 0.00 0.00 1.82
4347 4681 3.997762 AGTGACTACATACGGTGCAAAA 58.002 40.909 0.00 0.00 0.00 2.44
4348 4682 3.671008 AGTGACTACATACGGTGCAAA 57.329 42.857 0.00 0.00 0.00 3.68
4349 4683 3.243941 ACAAGTGACTACATACGGTGCAA 60.244 43.478 0.00 0.00 0.00 4.08
4350 4684 2.297880 ACAAGTGACTACATACGGTGCA 59.702 45.455 0.00 0.00 0.00 4.57
4351 4685 2.955614 ACAAGTGACTACATACGGTGC 58.044 47.619 0.00 0.00 0.00 5.01
4352 4686 4.552355 TCAACAAGTGACTACATACGGTG 58.448 43.478 0.00 0.00 0.00 4.94
4353 4687 4.859304 TCAACAAGTGACTACATACGGT 57.141 40.909 0.00 0.00 0.00 4.83
4354 4688 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
4355 4689 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
4356 4690 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
4358 4692 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
4359 4693 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
4360 4694 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
4361 4695 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
4362 4696 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
4363 4697 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
4364 4698 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
4365 4699 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
4366 4700 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
4367 4701 9.050601 ACTTGTCTTTCTAGAGATTTCAACAAG 57.949 33.333 18.42 18.42 32.73 3.16
4368 4702 8.964476 ACTTGTCTTTCTAGAGATTTCAACAA 57.036 30.769 0.00 0.00 0.00 2.83
4378 4712 9.291664 CGTTCCTAAATACTTGTCTTTCTAGAG 57.708 37.037 0.00 0.00 0.00 2.43
4379 4713 8.248945 CCGTTCCTAAATACTTGTCTTTCTAGA 58.751 37.037 0.00 0.00 0.00 2.43
4380 4714 8.248945 TCCGTTCCTAAATACTTGTCTTTCTAG 58.751 37.037 0.00 0.00 0.00 2.43
4381 4715 8.125978 TCCGTTCCTAAATACTTGTCTTTCTA 57.874 34.615 0.00 0.00 0.00 2.10
4382 4716 7.001099 TCCGTTCCTAAATACTTGTCTTTCT 57.999 36.000 0.00 0.00 0.00 2.52
4383 4717 6.872547 ACTCCGTTCCTAAATACTTGTCTTTC 59.127 38.462 0.00 0.00 0.00 2.62
4384 4718 6.649557 CACTCCGTTCCTAAATACTTGTCTTT 59.350 38.462 0.00 0.00 0.00 2.52
4385 4719 6.164176 CACTCCGTTCCTAAATACTTGTCTT 58.836 40.000 0.00 0.00 0.00 3.01
4386 4720 5.245526 ACACTCCGTTCCTAAATACTTGTCT 59.754 40.000 0.00 0.00 0.00 3.41
4387 4721 5.476614 ACACTCCGTTCCTAAATACTTGTC 58.523 41.667 0.00 0.00 0.00 3.18
4388 4722 5.011329 TGACACTCCGTTCCTAAATACTTGT 59.989 40.000 0.00 0.00 0.00 3.16
4389 4723 5.475719 TGACACTCCGTTCCTAAATACTTG 58.524 41.667 0.00 0.00 0.00 3.16
4390 4724 5.337330 CCTGACACTCCGTTCCTAAATACTT 60.337 44.000 0.00 0.00 0.00 2.24
4391 4725 4.159879 CCTGACACTCCGTTCCTAAATACT 59.840 45.833 0.00 0.00 0.00 2.12
4392 4726 4.159135 TCCTGACACTCCGTTCCTAAATAC 59.841 45.833 0.00 0.00 0.00 1.89
4393 4727 4.159135 GTCCTGACACTCCGTTCCTAAATA 59.841 45.833 0.00 0.00 0.00 1.40
4394 4728 3.056035 GTCCTGACACTCCGTTCCTAAAT 60.056 47.826 0.00 0.00 0.00 1.40
4395 4729 2.298163 GTCCTGACACTCCGTTCCTAAA 59.702 50.000 0.00 0.00 0.00 1.85
4396 4730 1.891150 GTCCTGACACTCCGTTCCTAA 59.109 52.381 0.00 0.00 0.00 2.69
4397 4731 1.542492 GTCCTGACACTCCGTTCCTA 58.458 55.000 0.00 0.00 0.00 2.94
4398 4732 1.186267 GGTCCTGACACTCCGTTCCT 61.186 60.000 0.00 0.00 0.00 3.36
4399 4733 1.292541 GGTCCTGACACTCCGTTCC 59.707 63.158 0.00 0.00 0.00 3.62
4400 4734 1.292541 GGGTCCTGACACTCCGTTC 59.707 63.158 0.00 0.00 0.00 3.95
4401 4735 2.214920 GGGGTCCTGACACTCCGTT 61.215 63.158 0.00 0.00 34.49 4.44
4402 4736 2.603776 GGGGTCCTGACACTCCGT 60.604 66.667 0.00 0.00 34.49 4.69
4403 4737 3.760035 CGGGGTCCTGACACTCCG 61.760 72.222 0.00 0.00 34.49 4.63
4404 4738 2.283676 TCGGGGTCCTGACACTCC 60.284 66.667 0.00 0.00 34.49 3.85
4410 4744 1.753078 CATCGAGTCGGGGTCCTGA 60.753 63.158 13.54 0.00 0.00 3.86
4411 4745 2.005960 GACATCGAGTCGGGGTCCTG 62.006 65.000 20.03 9.27 37.53 3.86
4412 4746 1.753463 GACATCGAGTCGGGGTCCT 60.753 63.158 20.03 0.00 37.53 3.85
4413 4747 2.806237 GACATCGAGTCGGGGTCC 59.194 66.667 20.03 8.02 37.53 4.46
4424 4758 2.590073 GGCTAGATCGATGTGACATCG 58.410 52.381 34.77 34.77 42.38 3.84
4425 4759 2.590073 CGGCTAGATCGATGTGACATC 58.410 52.381 15.36 15.36 0.00 3.06
4426 4760 1.270826 CCGGCTAGATCGATGTGACAT 59.729 52.381 0.54 0.00 0.00 3.06
4427 4761 0.668535 CCGGCTAGATCGATGTGACA 59.331 55.000 0.54 0.00 0.00 3.58
4428 4762 0.669077 ACCGGCTAGATCGATGTGAC 59.331 55.000 0.54 0.00 0.00 3.67
4429 4763 2.265589 TACCGGCTAGATCGATGTGA 57.734 50.000 0.54 0.00 0.00 3.58
4430 4764 2.034179 TGTTACCGGCTAGATCGATGTG 59.966 50.000 0.54 0.00 0.00 3.21
4431 4765 2.034305 GTGTTACCGGCTAGATCGATGT 59.966 50.000 0.54 0.00 0.00 3.06
4432 4766 2.607282 GGTGTTACCGGCTAGATCGATG 60.607 54.545 0.54 0.00 0.00 3.84
4433 4767 1.612463 GGTGTTACCGGCTAGATCGAT 59.388 52.381 0.00 0.00 0.00 3.59
4434 4768 1.027357 GGTGTTACCGGCTAGATCGA 58.973 55.000 0.00 0.00 0.00 3.59
4435 4769 1.001597 GAGGTGTTACCGGCTAGATCG 60.002 57.143 0.00 0.00 44.90 3.69
4436 4770 2.029623 TGAGGTGTTACCGGCTAGATC 58.970 52.381 0.00 0.00 44.90 2.75
4437 4771 2.154567 TGAGGTGTTACCGGCTAGAT 57.845 50.000 0.00 0.00 44.90 1.98
4438 4772 2.154567 ATGAGGTGTTACCGGCTAGA 57.845 50.000 0.00 0.00 44.90 2.43
4439 4773 3.572682 TGATATGAGGTGTTACCGGCTAG 59.427 47.826 0.00 0.00 44.90 3.42
4440 4774 3.319972 GTGATATGAGGTGTTACCGGCTA 59.680 47.826 0.00 0.00 44.90 3.93
4441 4775 2.102588 GTGATATGAGGTGTTACCGGCT 59.897 50.000 0.00 0.00 44.90 5.52
4442 4776 2.102588 AGTGATATGAGGTGTTACCGGC 59.897 50.000 0.00 0.00 44.90 6.13
4443 4777 4.402056 AAGTGATATGAGGTGTTACCGG 57.598 45.455 0.00 0.00 44.90 5.28
4444 4778 4.034048 GCAAAGTGATATGAGGTGTTACCG 59.966 45.833 0.00 0.00 44.90 4.02
4445 4779 4.034048 CGCAAAGTGATATGAGGTGTTACC 59.966 45.833 0.00 0.00 38.99 2.85
4446 4780 4.034048 CCGCAAAGTGATATGAGGTGTTAC 59.966 45.833 0.00 0.00 32.55 2.50
4447 4781 4.188462 CCGCAAAGTGATATGAGGTGTTA 58.812 43.478 0.00 0.00 32.55 2.41
4448 4782 3.009723 CCGCAAAGTGATATGAGGTGTT 58.990 45.455 0.00 0.00 32.55 3.32
4449 4783 2.632377 CCGCAAAGTGATATGAGGTGT 58.368 47.619 0.00 0.00 32.55 4.16
4450 4784 1.331756 GCCGCAAAGTGATATGAGGTG 59.668 52.381 0.00 0.00 38.58 4.00
4451 4785 1.668419 GCCGCAAAGTGATATGAGGT 58.332 50.000 0.00 0.00 38.58 3.85
4452 4786 0.947244 GGCCGCAAAGTGATATGAGG 59.053 55.000 0.00 0.00 39.25 3.86
4453 4787 1.869767 GAGGCCGCAAAGTGATATGAG 59.130 52.381 0.00 0.00 0.00 2.90
4454 4788 1.209261 TGAGGCCGCAAAGTGATATGA 59.791 47.619 6.75 0.00 0.00 2.15
4455 4789 1.331756 GTGAGGCCGCAAAGTGATATG 59.668 52.381 12.05 0.00 0.00 1.78
4456 4790 1.668419 GTGAGGCCGCAAAGTGATAT 58.332 50.000 12.05 0.00 0.00 1.63
4457 4791 0.739462 CGTGAGGCCGCAAAGTGATA 60.739 55.000 12.05 0.00 0.00 2.15
4458 4792 2.034879 CGTGAGGCCGCAAAGTGAT 61.035 57.895 12.05 0.00 0.00 3.06
4459 4793 2.664851 CGTGAGGCCGCAAAGTGA 60.665 61.111 12.05 0.00 0.00 3.41
4467 4801 4.508128 ATACCGTGCGTGAGGCCG 62.508 66.667 0.00 0.00 42.61 6.13
4468 4802 2.585247 GATACCGTGCGTGAGGCC 60.585 66.667 0.00 0.00 42.61 5.19
4469 4803 2.585247 GGATACCGTGCGTGAGGC 60.585 66.667 0.00 0.00 43.96 4.70
4486 4820 3.697747 TAAGGCGACACCCGTGGG 61.698 66.667 2.58 2.58 40.58 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.