Multiple sequence alignment - TraesCS2B01G361800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G361800 chr2B 100.000 5387 0 0 1 5387 514866487 514861101 0.000000e+00 9949.0
1 TraesCS2B01G361800 chr2B 84.197 386 41 15 156 525 30332839 30333220 1.850000e-94 357.0
2 TraesCS2B01G361800 chr2B 96.923 65 2 0 8 72 321689838 321689902 5.700000e-20 110.0
3 TraesCS2B01G361800 chr2B 95.161 62 3 0 11 72 264582693 264582632 1.230000e-16 99.0
4 TraesCS2B01G361800 chr2D 91.389 4657 239 85 143 4684 436368273 436372882 0.000000e+00 6229.0
5 TraesCS2B01G361800 chr2D 98.123 373 6 1 5015 5387 436373237 436373608 0.000000e+00 649.0
6 TraesCS2B01G361800 chr2D 84.000 225 25 7 4443 4656 120561490 120561266 7.070000e-49 206.0
7 TraesCS2B01G361800 chr2D 95.455 66 2 1 4678 4743 134301484 134301548 2.650000e-18 104.0
8 TraesCS2B01G361800 chr2D 89.706 68 3 2 9 72 49876873 49876806 3.460000e-12 84.2
9 TraesCS2B01G361800 chr2D 100.000 33 0 0 50 82 645728667 645728699 1.620000e-05 62.1
10 TraesCS2B01G361800 chr2A 92.437 3702 195 41 141 3825 550538381 550542014 0.000000e+00 5206.0
11 TraesCS2B01G361800 chr2A 89.425 643 40 14 3823 4443 550542054 550542690 0.000000e+00 785.0
12 TraesCS2B01G361800 chr2A 83.910 752 91 17 1936 2678 723566176 723566906 0.000000e+00 691.0
13 TraesCS2B01G361800 chr2A 92.708 480 32 3 4836 5315 550542685 550543161 0.000000e+00 689.0
14 TraesCS2B01G361800 chr2A 98.261 115 2 0 5273 5387 550543162 550543276 9.150000e-48 202.0
15 TraesCS2B01G361800 chr2A 79.139 302 50 7 1580 1881 723565882 723566170 4.260000e-46 196.0
16 TraesCS2B01G361800 chr2A 78.929 280 30 11 4439 4689 158051292 158051013 4.320000e-36 163.0
17 TraesCS2B01G361800 chr2A 85.629 167 9 2 4680 4831 275929399 275929233 1.550000e-35 161.0
18 TraesCS2B01G361800 chr2A 83.140 172 14 8 4679 4835 522841263 522841434 5.620000e-30 143.0
19 TraesCS2B01G361800 chr7D 84.176 752 90 15 1936 2678 31965561 31964830 0.000000e+00 702.0
20 TraesCS2B01G361800 chr7D 78.146 302 50 9 1580 1881 31965852 31965567 1.540000e-40 178.0
21 TraesCS2B01G361800 chr4A 84.043 752 90 18 1936 2678 417625545 417626275 0.000000e+00 697.0
22 TraesCS2B01G361800 chr4A 78.808 302 51 7 1580 1881 417625251 417625539 1.980000e-44 191.0
23 TraesCS2B01G361800 chr4A 83.704 135 17 5 4688 4817 630758503 630758369 7.330000e-24 122.0
24 TraesCS2B01G361800 chr6B 82.319 690 68 24 1994 2677 520243070 520243711 2.840000e-152 549.0
25 TraesCS2B01G361800 chr6B 90.110 91 9 0 1936 2026 630698669 630698579 9.480000e-23 119.0
26 TraesCS2B01G361800 chr3D 80.058 687 76 25 1994 2678 505790726 505790099 2.290000e-123 453.0
27 TraesCS2B01G361800 chr3D 86.598 194 19 4 2221 2414 491795703 491795517 1.970000e-49 207.0
28 TraesCS2B01G361800 chr3D 79.675 246 32 9 4462 4689 451880952 451880707 1.550000e-35 161.0
29 TraesCS2B01G361800 chr3D 81.765 170 25 4 4520 4683 374056814 374056983 2.620000e-28 137.0
30 TraesCS2B01G361800 chr5B 83.422 374 33 17 180 525 649446165 649446537 2.420000e-83 320.0
31 TraesCS2B01G361800 chr5B 85.333 150 18 3 4682 4827 418548889 418549038 9.350000e-33 152.0
32 TraesCS2B01G361800 chr5B 96.774 62 2 0 11 72 390710571 390710510 2.650000e-18 104.0
33 TraesCS2B01G361800 chr5B 98.000 50 1 0 7 56 477498426 477498475 2.670000e-13 87.9
34 TraesCS2B01G361800 chr3A 88.660 194 15 4 2221 2414 633293934 633293748 4.200000e-56 230.0
35 TraesCS2B01G361800 chr3A 83.230 161 21 4 4446 4600 46208889 46208729 5.620000e-30 143.0
36 TraesCS2B01G361800 chr4B 81.887 265 29 10 4443 4689 42938418 42938155 7.070000e-49 206.0
37 TraesCS2B01G361800 chr4B 83.226 155 18 4 4443 4589 377733046 377733200 9.410000e-28 135.0
38 TraesCS2B01G361800 chr1A 80.144 277 30 17 4438 4689 156671363 156671087 3.310000e-42 183.0
39 TraesCS2B01G361800 chr1A 79.554 269 35 7 4441 4689 568268781 568268513 1.990000e-39 174.0
40 TraesCS2B01G361800 chr1A 86.301 146 17 2 4687 4831 491646606 491646463 7.220000e-34 156.0
41 TraesCS2B01G361800 chr1A 83.333 168 13 2 4682 4834 54362536 54362369 2.020000e-29 141.0
42 TraesCS2B01G361800 chr1A 95.455 66 1 1 9 72 381297341 381297406 2.650000e-18 104.0
43 TraesCS2B01G361800 chr1A 91.176 68 2 2 9 72 40230842 40230909 7.430000e-14 89.8
44 TraesCS2B01G361800 chr1D 80.078 256 38 5 4442 4684 398570992 398571247 1.540000e-40 178.0
45 TraesCS2B01G361800 chr1D 94.792 96 4 1 4741 4835 19153727 19153632 1.210000e-31 148.0
46 TraesCS2B01G361800 chr1D 84.337 166 11 2 4682 4832 293904601 293904766 1.210000e-31 148.0
47 TraesCS2B01G361800 chr1D 90.323 62 6 0 11 72 411783214 411783275 1.240000e-11 82.4
48 TraesCS2B01G361800 chr1D 89.231 65 3 2 9 72 403375885 403375946 1.610000e-10 78.7
49 TraesCS2B01G361800 chr7A 79.554 269 30 12 4441 4684 75572984 75573252 9.280000e-38 169.0
50 TraesCS2B01G361800 chr6D 86.310 168 8 2 4680 4832 243032888 243033055 9.280000e-38 169.0
51 TraesCS2B01G361800 chr6D 84.431 167 11 2 4680 4831 404605355 404605521 3.360000e-32 150.0
52 TraesCS2B01G361800 chr5A 79.336 271 30 13 4440 4684 471410598 471410868 3.340000e-37 167.0
53 TraesCS2B01G361800 chr5A 79.508 244 25 10 4442 4661 295588346 295588104 3.360000e-32 150.0
54 TraesCS2B01G361800 chr3B 86.503 163 7 9 4688 4835 55460770 55460608 1.200000e-36 165.0
55 TraesCS2B01G361800 chr3B 78.846 260 37 7 4441 4684 821289826 821290083 5.580000e-35 159.0
56 TraesCS2B01G361800 chr3B 85.030 167 10 2 4680 4831 697907975 697908141 7.220000e-34 156.0
57 TraesCS2B01G361800 chr7B 84.524 168 15 4 4441 4598 454795313 454795147 7.220000e-34 156.0
58 TraesCS2B01G361800 chr7B 93.814 97 2 3 4742 4835 367021558 367021463 5.620000e-30 143.0
59 TraesCS2B01G361800 chr7B 83.333 168 11 4 4680 4832 123805243 123805078 7.280000e-29 139.0
60 TraesCS2B01G361800 chrUn 100.000 29 0 0 788 816 20368170 20368142 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G361800 chr2B 514861101 514866487 5386 True 9949.0 9949 100.00000 1 5387 1 chr2B.!!$R2 5386
1 TraesCS2B01G361800 chr2D 436368273 436373608 5335 False 3439.0 6229 94.75600 143 5387 2 chr2D.!!$F3 5244
2 TraesCS2B01G361800 chr2A 550538381 550543276 4895 False 1720.5 5206 93.20775 141 5387 4 chr2A.!!$F2 5246
3 TraesCS2B01G361800 chr2A 723565882 723566906 1024 False 443.5 691 81.52450 1580 2678 2 chr2A.!!$F3 1098
4 TraesCS2B01G361800 chr7D 31964830 31965852 1022 True 440.0 702 81.16100 1580 2678 2 chr7D.!!$R1 1098
5 TraesCS2B01G361800 chr4A 417625251 417626275 1024 False 444.0 697 81.42550 1580 2678 2 chr4A.!!$F1 1098
6 TraesCS2B01G361800 chr6B 520243070 520243711 641 False 549.0 549 82.31900 1994 2677 1 chr6B.!!$F1 683
7 TraesCS2B01G361800 chr3D 505790099 505790726 627 True 453.0 453 80.05800 1994 2678 1 chr3D.!!$R3 684


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
831 847 0.253327 GAAGGATTTCCCCGTGAGCT 59.747 55.000 0.0 0.0 36.42 4.09 F
2056 2088 0.036164 TGGGTGGGACTTTCATGTCG 59.964 55.000 0.0 0.0 37.81 4.35 F
2529 2575 0.239347 CCTTCCTTGCTGCTTGAACG 59.761 55.000 0.0 0.0 0.00 3.95 F
2530 2576 0.386478 CTTCCTTGCTGCTTGAACGC 60.386 55.000 0.0 0.0 0.00 4.84 F
3346 3394 1.352352 AGGTACTCAACAGCTTGCCAT 59.648 47.619 0.0 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2509 2555 0.038801 GTTCAAGCAGCAAGGAAGGC 60.039 55.0 0.0 0.0 0.0 4.35 R
3255 3303 0.035317 AATCACGCCTGACAAGCTCA 59.965 50.0 0.0 0.0 0.0 4.26 R
4340 4460 2.035066 GCATGGATTACACCATTCTGCC 59.965 50.0 0.0 0.0 47.0 4.85 R
4364 4488 7.424227 AACTAAATCGTCGTGTTTAATTGGA 57.576 32.0 0.0 0.0 0.0 3.53 R
4821 4986 0.179073 CAAGGGCATGTACTCCTCCG 60.179 60.0 0.0 0.0 0.0 4.63 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.678955 ATTTTGGTACTACTCCCTCTGTC 57.321 43.478 0.00 0.00 0.00 3.51
23 24 2.822707 TGGTACTACTCCCTCTGTCC 57.177 55.000 0.00 0.00 0.00 4.02
24 25 1.287146 TGGTACTACTCCCTCTGTCCC 59.713 57.143 0.00 0.00 0.00 4.46
25 26 1.287146 GGTACTACTCCCTCTGTCCCA 59.713 57.143 0.00 0.00 0.00 4.37
26 27 2.091222 GGTACTACTCCCTCTGTCCCAT 60.091 54.545 0.00 0.00 0.00 4.00
27 28 3.139770 GGTACTACTCCCTCTGTCCCATA 59.860 52.174 0.00 0.00 0.00 2.74
28 29 4.387211 GGTACTACTCCCTCTGTCCCATAA 60.387 50.000 0.00 0.00 0.00 1.90
29 30 4.561254 ACTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
30 31 4.227197 ACTACTCCCTCTGTCCCATAATG 58.773 47.826 0.00 0.00 0.00 1.90
31 32 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
32 33 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
33 34 4.631234 ACTCCCTCTGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
34 35 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
35 36 4.890988 TCCCTCTGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
36 37 5.285401 TCCCTCTGTCCCATAATGTAAGAA 58.715 41.667 0.00 0.00 0.00 2.52
37 38 5.366768 TCCCTCTGTCCCATAATGTAAGAAG 59.633 44.000 0.00 0.00 0.00 2.85
38 39 5.131142 CCCTCTGTCCCATAATGTAAGAAGT 59.869 44.000 0.00 0.00 0.00 3.01
39 40 6.353082 CCCTCTGTCCCATAATGTAAGAAGTT 60.353 42.308 0.00 0.00 0.00 2.66
40 41 7.112779 CCTCTGTCCCATAATGTAAGAAGTTT 58.887 38.462 0.00 0.00 0.00 2.66
41 42 7.611855 CCTCTGTCCCATAATGTAAGAAGTTTT 59.388 37.037 0.00 0.00 0.00 2.43
42 43 8.934023 TCTGTCCCATAATGTAAGAAGTTTTT 57.066 30.769 0.00 0.00 0.00 1.94
79 80 6.001449 TGGGACAGAGGGAGTAATATTTTG 57.999 41.667 0.00 0.00 0.00 2.44
80 81 4.822350 GGGACAGAGGGAGTAATATTTTGC 59.178 45.833 0.00 0.00 0.00 3.68
81 82 5.437060 GGACAGAGGGAGTAATATTTTGCA 58.563 41.667 0.00 0.00 0.00 4.08
82 83 5.885912 GGACAGAGGGAGTAATATTTTGCAA 59.114 40.000 0.00 0.00 0.00 4.08
83 84 6.038714 GGACAGAGGGAGTAATATTTTGCAAG 59.961 42.308 0.00 0.00 0.00 4.01
84 85 6.721318 ACAGAGGGAGTAATATTTTGCAAGA 58.279 36.000 0.00 0.00 0.00 3.02
85 86 6.599638 ACAGAGGGAGTAATATTTTGCAAGAC 59.400 38.462 0.00 0.00 0.00 3.01
86 87 6.599244 CAGAGGGAGTAATATTTTGCAAGACA 59.401 38.462 0.00 0.00 0.00 3.41
87 88 7.284034 CAGAGGGAGTAATATTTTGCAAGACAT 59.716 37.037 0.00 0.00 0.00 3.06
88 89 7.500559 AGAGGGAGTAATATTTTGCAAGACATC 59.499 37.037 0.00 0.00 0.00 3.06
89 90 6.547510 AGGGAGTAATATTTTGCAAGACATCC 59.452 38.462 0.00 1.12 0.00 3.51
90 91 6.321181 GGGAGTAATATTTTGCAAGACATCCA 59.679 38.462 0.00 0.00 0.00 3.41
91 92 7.147915 GGGAGTAATATTTTGCAAGACATCCAA 60.148 37.037 0.00 0.00 0.00 3.53
92 93 8.250332 GGAGTAATATTTTGCAAGACATCCAAA 58.750 33.333 0.00 0.00 0.00 3.28
93 94 9.807649 GAGTAATATTTTGCAAGACATCCAAAT 57.192 29.630 0.00 0.00 0.00 2.32
113 114 8.560576 CCAAATTTGGTAATATTAGAAGCGTG 57.439 34.615 26.34 0.00 43.43 5.34
114 115 8.402472 CCAAATTTGGTAATATTAGAAGCGTGA 58.598 33.333 26.34 0.00 43.43 4.35
115 116 9.781834 CAAATTTGGTAATATTAGAAGCGTGAA 57.218 29.630 10.49 0.00 0.00 3.18
119 120 9.826574 TTTGGTAATATTAGAAGCGTGAATACT 57.173 29.630 0.00 0.00 0.00 2.12
129 130 7.862512 AGAAGCGTGAATACTAGTTAGTACT 57.137 36.000 0.00 0.00 41.18 2.73
130 131 7.918643 AGAAGCGTGAATACTAGTTAGTACTC 58.081 38.462 0.00 1.59 41.18 2.59
131 132 6.616774 AGCGTGAATACTAGTTAGTACTCC 57.383 41.667 0.00 0.00 41.18 3.85
132 133 6.118170 AGCGTGAATACTAGTTAGTACTCCA 58.882 40.000 0.00 1.18 41.18 3.86
133 134 6.038050 AGCGTGAATACTAGTTAGTACTCCAC 59.962 42.308 0.00 0.00 41.18 4.02
134 135 6.183360 GCGTGAATACTAGTTAGTACTCCACA 60.183 42.308 0.00 7.69 41.18 4.17
135 136 7.627088 GCGTGAATACTAGTTAGTACTCCACAA 60.627 40.741 0.00 0.00 41.18 3.33
136 137 8.404000 CGTGAATACTAGTTAGTACTCCACAAT 58.596 37.037 0.00 0.00 41.18 2.71
224 229 3.246226 CACAATTACAGTATGGAGCTCGC 59.754 47.826 7.83 1.18 43.62 5.03
257 262 5.299531 GGGTTTCTCAGGGCTAAATTATCAC 59.700 44.000 0.00 0.00 0.00 3.06
277 282 7.623999 ATCACATAATCTATCTGGAGTGGTT 57.376 36.000 0.00 0.00 0.00 3.67
305 310 2.686405 TGTTAGATGTATCGACGGCAGT 59.314 45.455 0.00 0.00 0.00 4.40
344 349 1.927895 AGTAGCCTGAAATTCGAGCG 58.072 50.000 2.16 0.00 0.00 5.03
360 366 2.762745 GAGCGTGAAAAAGGGTAGACA 58.237 47.619 0.00 0.00 0.00 3.41
371 377 1.144093 AGGGTAGACAGGAGAGATCCG 59.856 57.143 0.00 0.00 34.28 4.18
453 459 2.107750 CGCGTCCATCTCCAGCAT 59.892 61.111 0.00 0.00 0.00 3.79
579 585 3.471806 GAGGAGGAGGCGGGGTTC 61.472 72.222 0.00 0.00 0.00 3.62
712 718 1.681666 CTGCTGCTTCCCTTCCTCA 59.318 57.895 0.00 0.00 0.00 3.86
777 793 1.080298 GCTTTGCTTCTGCCGCAAT 60.080 52.632 0.00 0.00 45.67 3.56
783 799 1.134431 TGCTTCTGCCGCAATAGATGA 60.134 47.619 0.00 0.00 38.71 2.92
812 828 1.817881 CAGAGCAGAGCAGAGGAGG 59.182 63.158 0.00 0.00 0.00 4.30
821 837 2.771372 AGAGCAGAGGAGGAAGGATTTC 59.229 50.000 0.00 0.00 0.00 2.17
831 847 0.253327 GAAGGATTTCCCCGTGAGCT 59.747 55.000 0.00 0.00 36.42 4.09
832 848 0.253327 AAGGATTTCCCCGTGAGCTC 59.747 55.000 6.82 6.82 36.42 4.09
890 907 3.875134 CTGGTTCCACGTGTATTAATCCC 59.125 47.826 15.65 3.37 0.00 3.85
891 908 2.867975 GGTTCCACGTGTATTAATCCCG 59.132 50.000 15.65 0.00 0.00 5.14
892 909 2.228138 TCCACGTGTATTAATCCCGC 57.772 50.000 15.65 0.00 0.00 6.13
932 949 2.270205 CTGTGCTGGGCGGAGAAT 59.730 61.111 0.00 0.00 0.00 2.40
1000 1017 0.671781 CAGCTCCAGTTTCGTCCCTG 60.672 60.000 0.00 0.00 0.00 4.45
1620 1641 7.530010 CAATTGAAACCTATGTGACTGTAAGG 58.470 38.462 0.00 0.00 39.30 2.69
1657 1678 7.094377 GCAAGGTCTCATTGGACTGTTAATTAA 60.094 37.037 0.00 0.00 36.55 1.40
1659 1680 9.533831 AAGGTCTCATTGGACTGTTAATTAATT 57.466 29.630 5.89 5.89 36.55 1.40
1729 1752 7.927048 TGATCTCTGCACATGAAAATCTAATG 58.073 34.615 0.00 0.00 0.00 1.90
1747 1777 1.034838 TGGCCACAGGTTGTGTTGAC 61.035 55.000 0.00 0.00 46.45 3.18
1757 1788 2.484264 GGTTGTGTTGACTGATGTAGCC 59.516 50.000 0.00 0.00 0.00 3.93
1765 1796 3.797039 TGACTGATGTAGCCATACAAGC 58.203 45.455 0.00 0.00 44.85 4.01
1773 1804 7.154656 TGATGTAGCCATACAAGCACTATTAG 58.845 38.462 0.00 0.00 44.85 1.73
1780 1811 7.502226 AGCCATACAAGCACTATTAGCATTTTA 59.498 33.333 0.00 0.00 0.00 1.52
1856 1888 5.995446 TGTAGGTACAATCCATATGTGCAA 58.005 37.500 1.24 0.00 35.42 4.08
1927 1959 1.340114 GGTTTGTCCCTAGCCCAAGAG 60.340 57.143 0.00 0.00 0.00 2.85
1951 1983 8.503458 AGACTATTTCATCTTGATTTGAGTGG 57.497 34.615 0.00 0.00 0.00 4.00
1952 1984 7.066766 AGACTATTTCATCTTGATTTGAGTGGC 59.933 37.037 0.00 0.00 0.00 5.01
1968 2000 3.806380 AGTGGCTTCATGCTCAATCTAG 58.194 45.455 0.00 0.00 42.39 2.43
1983 2015 8.777413 TGCTCAATCTAGTTATATTTGATGCAC 58.223 33.333 0.00 0.00 31.69 4.57
2056 2088 0.036164 TGGGTGGGACTTTCATGTCG 59.964 55.000 0.00 0.00 37.81 4.35
2113 2152 2.972021 TCTCCATGATGCTTTATCGGGA 59.028 45.455 0.00 0.00 38.68 5.14
2416 2458 1.609208 GTGACACAAACAGAGGCCAT 58.391 50.000 5.01 0.00 0.00 4.40
2478 2523 7.539034 AAGATGCTGGTTTTAAGGTTATTGT 57.461 32.000 0.00 0.00 0.00 2.71
2490 2536 1.612199 GGTTATTGTTCACCGCCCTCA 60.612 52.381 0.00 0.00 0.00 3.86
2499 2545 1.032114 CACCGCCCTCAAATTCCTCC 61.032 60.000 0.00 0.00 0.00 4.30
2509 2555 5.337009 CCCTCAAATTCCTCCTGTTGAATTG 60.337 44.000 0.00 0.00 39.59 2.32
2510 2556 5.138125 TCAAATTCCTCCTGTTGAATTGC 57.862 39.130 0.00 0.00 39.59 3.56
2519 2565 2.611224 CCTGTTGAATTGCCTTCCTTGC 60.611 50.000 0.00 0.00 32.49 4.01
2529 2575 0.239347 CCTTCCTTGCTGCTTGAACG 59.761 55.000 0.00 0.00 0.00 3.95
2530 2576 0.386478 CTTCCTTGCTGCTTGAACGC 60.386 55.000 0.00 0.00 0.00 4.84
2581 2629 7.600752 GTCTTCTTAGCTTGAGTTATGACTTGT 59.399 37.037 0.00 0.00 35.88 3.16
2667 2715 4.559862 ACCTAATGTTGGAGTTGAGAGG 57.440 45.455 0.00 0.00 0.00 3.69
2849 2897 6.500684 TTGATCTTATGGTCAGTCTTTTGC 57.499 37.500 0.00 0.00 0.00 3.68
2851 2899 6.240894 TGATCTTATGGTCAGTCTTTTGCTT 58.759 36.000 0.00 0.00 0.00 3.91
2852 2900 6.372659 TGATCTTATGGTCAGTCTTTTGCTTC 59.627 38.462 0.00 0.00 0.00 3.86
2857 2905 5.489792 TGGTCAGTCTTTTGCTTCTCTAT 57.510 39.130 0.00 0.00 0.00 1.98
2872 2920 8.582657 TGCTTCTCTATAGTTTTAGAGTGAGT 57.417 34.615 0.00 0.00 43.74 3.41
3085 3133 1.740025 CTTTGGCTCGAATGGAAGACC 59.260 52.381 0.00 0.00 0.00 3.85
3183 3231 8.694540 ACTGCCATGTGCTTATAATTGATTAAA 58.305 29.630 7.54 0.00 42.00 1.52
3276 3324 1.661112 GAGCTTGTCAGGCGTGATTAC 59.339 52.381 12.93 0.94 34.36 1.89
3291 3339 1.396996 GATTACGCTGCAAATGACGGT 59.603 47.619 0.00 0.00 0.00 4.83
3346 3394 1.352352 AGGTACTCAACAGCTTGCCAT 59.648 47.619 0.00 0.00 0.00 4.40
3355 3403 3.589951 ACAGCTTGCCATCCTATTCAT 57.410 42.857 0.00 0.00 0.00 2.57
3459 3514 6.833416 TCAATTTCCTTTACATAGGTGGGATG 59.167 38.462 0.00 0.00 36.63 3.51
3465 3520 6.435904 TCCTTTACATAGGTGGGATGTTTTTG 59.564 38.462 0.00 0.00 38.47 2.44
3473 3528 6.590234 AGGTGGGATGTTTTTGAACTTATC 57.410 37.500 0.00 0.00 0.00 1.75
3474 3529 5.480422 AGGTGGGATGTTTTTGAACTTATCC 59.520 40.000 0.00 0.00 34.69 2.59
3477 3535 5.835819 TGGGATGTTTTTGAACTTATCCACA 59.164 36.000 0.00 0.00 36.63 4.17
3491 3549 9.555727 GAACTTATCCACATAGTTATTGCCTTA 57.444 33.333 0.00 0.00 0.00 2.69
3504 3562 8.644374 AGTTATTGCCTTATTGGTTTCACTTA 57.356 30.769 0.00 0.00 38.35 2.24
3540 3598 8.725148 AGTTTTAATCTCTGTTCTGCTTGTATG 58.275 33.333 0.00 0.00 0.00 2.39
3545 3603 4.526650 TCTCTGTTCTGCTTGTATGGTGTA 59.473 41.667 0.00 0.00 0.00 2.90
3548 3606 4.968259 TGTTCTGCTTGTATGGTGTACTT 58.032 39.130 0.00 0.00 0.00 2.24
3583 3645 5.186198 GTGCATAGAGTTTATCACTGGGTT 58.814 41.667 0.00 0.00 35.01 4.11
3589 3651 9.099454 CATAGAGTTTATCACTGGGTTTCTTAC 57.901 37.037 0.00 0.00 35.01 2.34
3603 3665 6.650427 GGTTTCTTACCCTTTTGATCTTGT 57.350 37.500 0.00 0.00 41.43 3.16
3628 3690 8.276325 GTGTAACATTACTCACACTTCTCTTTG 58.724 37.037 3.58 0.00 38.56 2.77
3752 3814 1.920574 CTTCATGTCTACGGAACAGCG 59.079 52.381 0.00 0.00 0.00 5.18
3809 3871 5.705905 GCAACACCAGGTTAATCTCTTACTT 59.294 40.000 0.00 0.00 37.72 2.24
3821 3883 9.974750 GTTAATCTCTTACTTGAACAACTATGC 57.025 33.333 0.00 0.00 0.00 3.14
3841 3952 6.683974 ATGCGTGCTCAGAATAGTAAAAAT 57.316 33.333 0.00 0.00 0.00 1.82
3842 3953 6.494893 TGCGTGCTCAGAATAGTAAAAATT 57.505 33.333 0.00 0.00 0.00 1.82
3853 3966 9.238368 CAGAATAGTAAAAATTAGGACCCACAA 57.762 33.333 0.00 0.00 0.00 3.33
3894 4008 7.019774 TGAATGAATACTTGCTAAGCATGAC 57.980 36.000 0.00 0.00 38.76 3.06
3895 4009 6.598850 TGAATGAATACTTGCTAAGCATGACA 59.401 34.615 0.00 0.00 38.76 3.58
3896 4010 5.801350 TGAATACTTGCTAAGCATGACAC 57.199 39.130 0.00 0.00 38.76 3.67
3897 4011 5.491070 TGAATACTTGCTAAGCATGACACT 58.509 37.500 0.00 0.00 38.76 3.55
3899 4013 7.102993 TGAATACTTGCTAAGCATGACACTAA 58.897 34.615 0.00 0.00 38.76 2.24
3900 4014 7.278646 TGAATACTTGCTAAGCATGACACTAAG 59.721 37.037 0.00 0.00 38.76 2.18
3901 4015 4.256920 ACTTGCTAAGCATGACACTAAGG 58.743 43.478 0.00 0.00 38.76 2.69
3902 4016 2.632377 TGCTAAGCATGACACTAAGGC 58.368 47.619 0.00 0.00 31.71 4.35
3903 4017 2.237143 TGCTAAGCATGACACTAAGGCT 59.763 45.455 0.00 0.00 31.71 4.58
3909 4025 5.629079 AGCATGACACTAAGGCTTTTTAC 57.371 39.130 4.45 0.00 0.00 2.01
3976 4092 2.391616 TTACCATGACTCTGCTGCTG 57.608 50.000 0.00 0.00 0.00 4.41
4021 4137 6.773976 TTTGTTCCATCCATCACCTATTTC 57.226 37.500 0.00 0.00 0.00 2.17
4201 4317 6.321945 TGGCATAGTGTATTTCAGCATCAAAT 59.678 34.615 0.00 0.00 0.00 2.32
4206 4322 5.047164 AGTGTATTTCAGCATCAAATGGCAA 60.047 36.000 0.00 0.00 0.00 4.52
4340 4460 5.734855 ATAGCAGCGTATTACACCTTTTG 57.265 39.130 0.00 0.00 0.00 2.44
4364 4488 3.817084 CAGAATGGTGTAATCCATGCGAT 59.183 43.478 0.00 0.00 45.63 4.58
4367 4516 1.488393 TGGTGTAATCCATGCGATCCA 59.512 47.619 0.00 0.00 31.96 3.41
4369 4518 3.149196 GGTGTAATCCATGCGATCCAAT 58.851 45.455 0.00 0.00 0.00 3.16
4372 4521 5.240623 GGTGTAATCCATGCGATCCAATTAA 59.759 40.000 0.00 0.00 0.00 1.40
4453 4602 2.702592 TTTCCCTTAGGGCATGTACG 57.297 50.000 13.54 0.00 43.94 3.67
4455 4604 1.227853 CCCTTAGGGCATGTACGGC 60.228 63.158 3.52 0.95 35.35 5.68
4470 4619 2.396590 ACGGCGGTTGATAAGACAAT 57.603 45.000 13.24 0.00 32.36 2.71
4472 4621 2.093658 ACGGCGGTTGATAAGACAATCT 60.094 45.455 13.24 0.00 32.36 2.40
4474 4623 4.116961 CGGCGGTTGATAAGACAATCTTA 58.883 43.478 0.00 0.95 42.49 2.10
4570 4729 5.757320 CAGCTATTCCTAGAAACATGGTGAG 59.243 44.000 0.00 0.00 0.00 3.51
4578 4737 8.547481 TCCTAGAAACATGGTGAGACATATTA 57.453 34.615 0.00 0.00 0.00 0.98
4581 4740 7.502120 AGAAACATGGTGAGACATATTATGC 57.498 36.000 3.52 0.00 0.00 3.14
4585 4744 8.613060 AACATGGTGAGACATATTATGCTAAG 57.387 34.615 3.52 0.00 0.00 2.18
4645 4807 5.533112 TGATTTCTCTCTCCTCCACCTTAT 58.467 41.667 0.00 0.00 0.00 1.73
4653 4815 7.453126 TCTCTCTCCTCCACCTTATCATTTATC 59.547 40.741 0.00 0.00 0.00 1.75
4656 4818 6.270927 TCTCCTCCACCTTATCATTTATCCTG 59.729 42.308 0.00 0.00 0.00 3.86
4660 4822 6.005823 TCCACCTTATCATTTATCCTGCATG 58.994 40.000 0.00 0.00 0.00 4.06
4662 4824 6.662234 CCACCTTATCATTTATCCTGCATGAT 59.338 38.462 9.54 9.54 40.16 2.45
4666 4828 9.107177 CCTTATCATTTATCCTGCATGATACTC 57.893 37.037 10.81 0.00 38.86 2.59
4667 4829 9.107177 CTTATCATTTATCCTGCATGATACTCC 57.893 37.037 10.81 0.00 38.86 3.85
4677 4842 4.159557 TGCATGATACTCCTATAGCACCA 58.840 43.478 0.00 0.00 0.00 4.17
4684 4849 7.010771 TGATACTCCTATAGCACCATTGTACT 58.989 38.462 0.00 0.00 0.00 2.73
4685 4850 5.793030 ACTCCTATAGCACCATTGTACTC 57.207 43.478 0.00 0.00 0.00 2.59
4686 4851 4.589374 ACTCCTATAGCACCATTGTACTCC 59.411 45.833 0.00 0.00 0.00 3.85
4688 4853 3.904339 CCTATAGCACCATTGTACTCCCT 59.096 47.826 0.00 0.00 0.00 4.20
4691 4856 0.462047 GCACCATTGTACTCCCTCCG 60.462 60.000 0.00 0.00 0.00 4.63
4692 4857 0.902531 CACCATTGTACTCCCTCCGT 59.097 55.000 0.00 0.00 0.00 4.69
4694 4859 1.553704 ACCATTGTACTCCCTCCGTTC 59.446 52.381 0.00 0.00 0.00 3.95
4695 4860 1.134491 CCATTGTACTCCCTCCGTTCC 60.134 57.143 0.00 0.00 0.00 3.62
4696 4861 1.831736 CATTGTACTCCCTCCGTTCCT 59.168 52.381 0.00 0.00 0.00 3.36
4697 4862 2.905415 TTGTACTCCCTCCGTTCCTA 57.095 50.000 0.00 0.00 0.00 2.94
4698 4863 2.905415 TGTACTCCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
4699 4864 3.173953 TGTACTCCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
4700 4865 3.716431 TGTACTCCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
4701 4866 4.870636 TGTACTCCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
4702 4867 5.461327 TGTACTCCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
4703 4868 6.613699 TGTACTCCCTCCGTTCCTAAATATA 58.386 40.000 0.00 0.00 0.00 0.86
4704 4869 6.718454 TGTACTCCCTCCGTTCCTAAATATAG 59.282 42.308 0.00 0.00 0.00 1.31
4728 4893 8.753497 AGGTCTTTTTAGAGATTTCAACAAGT 57.247 30.769 0.00 0.00 0.00 3.16
4729 4894 8.624776 AGGTCTTTTTAGAGATTTCAACAAGTG 58.375 33.333 0.00 0.00 0.00 3.16
4730 4895 8.621286 GGTCTTTTTAGAGATTTCAACAAGTGA 58.379 33.333 0.00 0.00 0.00 3.41
4739 4904 8.873830 AGAGATTTCAACAAGTGATTACATACG 58.126 33.333 0.00 0.00 35.70 3.06
4740 4905 7.974675 AGATTTCAACAAGTGATTACATACGG 58.025 34.615 0.00 0.00 35.70 4.02
4741 4906 7.822334 AGATTTCAACAAGTGATTACATACGGA 59.178 33.333 0.00 0.00 35.70 4.69
4742 4907 7.915293 TTTCAACAAGTGATTACATACGGAT 57.085 32.000 0.00 0.00 35.70 4.18
4743 4908 7.534085 TTCAACAAGTGATTACATACGGATC 57.466 36.000 0.00 0.00 35.70 3.36
4744 4909 6.873997 TCAACAAGTGATTACATACGGATCT 58.126 36.000 0.00 0.00 0.00 2.75
4745 4910 8.002984 TCAACAAGTGATTACATACGGATCTA 57.997 34.615 0.00 0.00 0.00 1.98
4746 4911 7.919091 TCAACAAGTGATTACATACGGATCTAC 59.081 37.037 0.00 0.00 0.00 2.59
4747 4912 7.342769 ACAAGTGATTACATACGGATCTACA 57.657 36.000 0.00 0.00 0.00 2.74
4748 4913 7.201145 ACAAGTGATTACATACGGATCTACAC 58.799 38.462 0.00 0.00 0.00 2.90
4749 4914 7.068348 ACAAGTGATTACATACGGATCTACACT 59.932 37.037 0.00 0.00 36.63 3.55
4750 4915 7.204496 AGTGATTACATACGGATCTACACTC 57.796 40.000 0.00 0.00 30.77 3.51
4751 4916 6.999272 AGTGATTACATACGGATCTACACTCT 59.001 38.462 0.00 0.00 30.77 3.24
4752 4917 8.155510 AGTGATTACATACGGATCTACACTCTA 58.844 37.037 0.00 0.00 30.77 2.43
4753 4918 8.781196 GTGATTACATACGGATCTACACTCTAA 58.219 37.037 0.00 0.00 0.00 2.10
4754 4919 9.346005 TGATTACATACGGATCTACACTCTAAA 57.654 33.333 0.00 0.00 0.00 1.85
4828 4993 9.780186 AAAGAATTATATTTAGGAACGGAGGAG 57.220 33.333 0.00 0.00 0.00 3.69
4829 4994 8.493787 AGAATTATATTTAGGAACGGAGGAGT 57.506 34.615 0.00 0.00 0.00 3.85
4830 4995 9.597681 AGAATTATATTTAGGAACGGAGGAGTA 57.402 33.333 0.00 0.00 0.00 2.59
4831 4996 9.636879 GAATTATATTTAGGAACGGAGGAGTAC 57.363 37.037 0.00 0.00 0.00 2.73
4832 4997 8.716674 ATTATATTTAGGAACGGAGGAGTACA 57.283 34.615 0.00 0.00 0.00 2.90
4833 4998 8.716674 TTATATTTAGGAACGGAGGAGTACAT 57.283 34.615 0.00 0.00 0.00 2.29
4834 4999 4.730949 TTTAGGAACGGAGGAGTACATG 57.269 45.455 0.00 0.00 0.00 3.21
4835 5000 0.824759 AGGAACGGAGGAGTACATGC 59.175 55.000 0.00 0.00 0.00 4.06
4836 5001 0.179081 GGAACGGAGGAGTACATGCC 60.179 60.000 0.00 0.00 0.00 4.40
4837 5002 0.179081 GAACGGAGGAGTACATGCCC 60.179 60.000 0.00 0.00 0.00 5.36
4838 5003 0.617820 AACGGAGGAGTACATGCCCT 60.618 55.000 0.00 0.00 0.00 5.19
4839 5004 0.617820 ACGGAGGAGTACATGCCCTT 60.618 55.000 0.00 0.00 0.00 3.95
4840 5005 0.179073 CGGAGGAGTACATGCCCTTG 60.179 60.000 0.00 0.00 0.00 3.61
4849 5014 4.445710 ATGCCCTTGCCCGCATGA 62.446 61.111 0.00 0.00 43.91 3.07
4893 5058 6.353323 TGTCCAGTTTGTTGAGAAGTTATCA 58.647 36.000 0.00 0.00 0.00 2.15
4915 5081 7.904558 TCAGAGTAATGAATGATCACTAGGT 57.095 36.000 0.00 0.00 38.69 3.08
4916 5082 7.720442 TCAGAGTAATGAATGATCACTAGGTG 58.280 38.462 0.00 0.00 38.69 4.00
4917 5083 6.423302 CAGAGTAATGAATGATCACTAGGTGC 59.577 42.308 0.00 0.00 38.69 5.01
4920 5086 7.112122 AGTAATGAATGATCACTAGGTGCAAA 58.888 34.615 0.00 0.00 38.69 3.68
4921 5087 6.446781 AATGAATGATCACTAGGTGCAAAG 57.553 37.500 0.00 0.00 38.69 2.77
4922 5088 5.164620 TGAATGATCACTAGGTGCAAAGA 57.835 39.130 0.00 0.00 32.98 2.52
4924 5090 6.182627 TGAATGATCACTAGGTGCAAAGATT 58.817 36.000 0.00 0.00 32.98 2.40
4925 5091 7.337938 TGAATGATCACTAGGTGCAAAGATTA 58.662 34.615 0.00 0.00 32.98 1.75
4926 5092 7.994911 TGAATGATCACTAGGTGCAAAGATTAT 59.005 33.333 0.00 0.00 32.98 1.28
4935 5101 8.107095 ACTAGGTGCAAAGATTATTTACAGGAA 58.893 33.333 0.00 0.00 0.00 3.36
4955 5121 0.178984 TAGTCCCACGTCACACTCCA 60.179 55.000 0.00 0.00 0.00 3.86
4958 5124 1.480954 GTCCCACGTCACACTCCATAT 59.519 52.381 0.00 0.00 0.00 1.78
4960 5126 1.757118 CCCACGTCACACTCCATATCT 59.243 52.381 0.00 0.00 0.00 1.98
4966 5132 4.342378 ACGTCACACTCCATATCTGCTATT 59.658 41.667 0.00 0.00 0.00 1.73
4985 5151 6.755141 TGCTATTTTTATCGGACAGTGAGTAC 59.245 38.462 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.836562 GGACAGAGGGAGTAGTACCAAAA 59.163 47.826 0.40 0.00 0.00 2.44
3 4 2.292061 GGGACAGAGGGAGTAGTACCAA 60.292 54.545 0.40 0.00 35.00 3.67
4 5 1.287146 GGGACAGAGGGAGTAGTACCA 59.713 57.143 0.40 0.00 35.00 3.25
5 6 1.287146 TGGGACAGAGGGAGTAGTACC 59.713 57.143 0.00 0.00 35.47 3.34
6 7 2.822707 TGGGACAGAGGGAGTAGTAC 57.177 55.000 0.00 0.00 0.00 2.73
39 40 7.227873 TCTGTCCCATAATGTAGTGTCAAAAA 58.772 34.615 0.00 0.00 0.00 1.94
40 41 6.774673 TCTGTCCCATAATGTAGTGTCAAAA 58.225 36.000 0.00 0.00 0.00 2.44
41 42 6.367374 TCTGTCCCATAATGTAGTGTCAAA 57.633 37.500 0.00 0.00 0.00 2.69
42 43 5.104941 CCTCTGTCCCATAATGTAGTGTCAA 60.105 44.000 0.00 0.00 0.00 3.18
43 44 4.405680 CCTCTGTCCCATAATGTAGTGTCA 59.594 45.833 0.00 0.00 0.00 3.58
44 45 4.202264 CCCTCTGTCCCATAATGTAGTGTC 60.202 50.000 0.00 0.00 0.00 3.67
45 46 3.711704 CCCTCTGTCCCATAATGTAGTGT 59.288 47.826 0.00 0.00 0.00 3.55
46 47 3.967326 TCCCTCTGTCCCATAATGTAGTG 59.033 47.826 0.00 0.00 0.00 2.74
47 48 4.227197 CTCCCTCTGTCCCATAATGTAGT 58.773 47.826 0.00 0.00 0.00 2.73
48 49 4.227197 ACTCCCTCTGTCCCATAATGTAG 58.773 47.826 0.00 0.00 0.00 2.74
49 50 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
50 51 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
51 52 5.832539 ATTACTCCCTCTGTCCCATAATG 57.167 43.478 0.00 0.00 0.00 1.90
52 53 8.525729 AAATATTACTCCCTCTGTCCCATAAT 57.474 34.615 0.00 0.00 0.00 1.28
53 54 7.947782 AAATATTACTCCCTCTGTCCCATAA 57.052 36.000 0.00 0.00 0.00 1.90
54 55 7.691791 GCAAAATATTACTCCCTCTGTCCCATA 60.692 40.741 0.00 0.00 0.00 2.74
55 56 6.605119 CAAAATATTACTCCCTCTGTCCCAT 58.395 40.000 0.00 0.00 0.00 4.00
56 57 5.631481 GCAAAATATTACTCCCTCTGTCCCA 60.631 44.000 0.00 0.00 0.00 4.37
57 58 4.822350 GCAAAATATTACTCCCTCTGTCCC 59.178 45.833 0.00 0.00 0.00 4.46
58 59 5.437060 TGCAAAATATTACTCCCTCTGTCC 58.563 41.667 0.00 0.00 0.00 4.02
59 60 6.823689 TCTTGCAAAATATTACTCCCTCTGTC 59.176 38.462 0.00 0.00 0.00 3.51
60 61 6.599638 GTCTTGCAAAATATTACTCCCTCTGT 59.400 38.462 0.00 0.00 0.00 3.41
61 62 6.599244 TGTCTTGCAAAATATTACTCCCTCTG 59.401 38.462 0.00 0.00 0.00 3.35
62 63 6.721318 TGTCTTGCAAAATATTACTCCCTCT 58.279 36.000 0.00 0.00 0.00 3.69
63 64 7.255277 GGATGTCTTGCAAAATATTACTCCCTC 60.255 40.741 0.00 0.00 0.00 4.30
64 65 6.547510 GGATGTCTTGCAAAATATTACTCCCT 59.452 38.462 0.00 0.00 0.00 4.20
65 66 6.321181 TGGATGTCTTGCAAAATATTACTCCC 59.679 38.462 0.00 0.00 0.00 4.30
66 67 7.333528 TGGATGTCTTGCAAAATATTACTCC 57.666 36.000 0.00 0.13 0.00 3.85
67 68 9.807649 ATTTGGATGTCTTGCAAAATATTACTC 57.192 29.630 9.03 0.00 46.84 2.59
89 90 9.781834 TTCACGCTTCTAATATTACCAAATTTG 57.218 29.630 11.40 11.40 0.00 2.32
93 94 9.826574 AGTATTCACGCTTCTAATATTACCAAA 57.173 29.630 0.00 0.00 0.00 3.28
103 104 9.388506 AGTACTAACTAGTATTCACGCTTCTAA 57.611 33.333 0.00 0.00 40.55 2.10
104 105 8.954950 AGTACTAACTAGTATTCACGCTTCTA 57.045 34.615 0.00 0.00 40.55 2.10
105 106 7.012232 GGAGTACTAACTAGTATTCACGCTTCT 59.988 40.741 16.64 1.51 43.33 2.85
106 107 7.131565 GGAGTACTAACTAGTATTCACGCTTC 58.868 42.308 16.64 0.00 43.33 3.86
107 108 6.600822 TGGAGTACTAACTAGTATTCACGCTT 59.399 38.462 16.64 0.00 43.33 4.68
108 109 6.038050 GTGGAGTACTAACTAGTATTCACGCT 59.962 42.308 16.64 3.17 43.33 5.07
109 110 6.183360 TGTGGAGTACTAACTAGTATTCACGC 60.183 42.308 16.64 13.39 43.33 5.34
110 111 7.312657 TGTGGAGTACTAACTAGTATTCACG 57.687 40.000 16.64 0.00 43.33 4.35
116 117 9.745018 ACTGTAATTGTGGAGTACTAACTAGTA 57.255 33.333 0.00 0.00 35.56 1.82
117 118 8.647256 ACTGTAATTGTGGAGTACTAACTAGT 57.353 34.615 0.00 0.00 35.56 2.57
118 119 8.958506 AGACTGTAATTGTGGAGTACTAACTAG 58.041 37.037 0.00 0.00 35.56 2.57
119 120 8.874744 AGACTGTAATTGTGGAGTACTAACTA 57.125 34.615 0.00 0.00 35.56 2.24
120 121 7.778185 AGACTGTAATTGTGGAGTACTAACT 57.222 36.000 0.00 0.00 39.21 2.24
121 122 8.738106 ACTAGACTGTAATTGTGGAGTACTAAC 58.262 37.037 0.00 0.00 30.37 2.34
122 123 8.874744 ACTAGACTGTAATTGTGGAGTACTAA 57.125 34.615 0.00 0.00 30.37 2.24
123 124 8.874744 AACTAGACTGTAATTGTGGAGTACTA 57.125 34.615 0.00 0.00 30.37 1.82
124 125 7.778185 AACTAGACTGTAATTGTGGAGTACT 57.222 36.000 0.00 0.00 30.37 2.73
162 163 5.184864 TCTTGATGACACACCTGTTGTTTTT 59.815 36.000 0.00 0.00 35.67 1.94
166 167 3.558931 TCTTGATGACACACCTGTTGT 57.441 42.857 0.00 0.00 39.97 3.32
167 168 3.627123 TGTTCTTGATGACACACCTGTTG 59.373 43.478 0.00 0.00 0.00 3.33
169 170 3.558931 TGTTCTTGATGACACACCTGT 57.441 42.857 0.00 0.00 0.00 4.00
170 171 4.898829 TTTGTTCTTGATGACACACCTG 57.101 40.909 0.00 0.00 0.00 4.00
171 172 5.132502 TCATTTGTTCTTGATGACACACCT 58.867 37.500 0.00 0.00 0.00 4.00
173 174 6.728200 TCTTCATTTGTTCTTGATGACACAC 58.272 36.000 0.00 0.00 30.10 3.82
174 175 6.940831 TCTTCATTTGTTCTTGATGACACA 57.059 33.333 0.00 0.00 30.10 3.72
175 176 8.807667 AATTCTTCATTTGTTCTTGATGACAC 57.192 30.769 0.00 0.00 30.10 3.67
176 177 8.084073 GGAATTCTTCATTTGTTCTTGATGACA 58.916 33.333 5.23 0.00 30.10 3.58
177 178 8.084073 TGGAATTCTTCATTTGTTCTTGATGAC 58.916 33.333 5.23 0.00 30.10 3.06
178 179 8.084073 GTGGAATTCTTCATTTGTTCTTGATGA 58.916 33.333 5.23 0.00 0.00 2.92
214 215 2.816958 CAGCGTTGCGAGCTCCAT 60.817 61.111 8.47 0.00 44.06 3.41
224 229 2.175184 CTGAGAAACCCGCAGCGTTG 62.175 60.000 15.05 7.06 35.96 4.10
232 237 2.420058 ATTTAGCCCTGAGAAACCCG 57.580 50.000 0.00 0.00 0.00 5.28
277 282 7.080099 GCCGTCGATACATCTAACATAGTTTA 58.920 38.462 0.00 0.00 0.00 2.01
305 310 8.262933 GGCTACTTTCTAGGGTTTCAAATACTA 58.737 37.037 0.00 0.00 0.00 1.82
344 349 4.283722 TCTCTCCTGTCTACCCTTTTTCAC 59.716 45.833 0.00 0.00 0.00 3.18
360 366 1.064017 AGAAGTGAGCGGATCTCTCCT 60.064 52.381 11.25 0.00 42.38 3.69
371 377 1.980156 GAAGTTCGACGAGAAGTGAGC 59.020 52.381 0.00 0.00 41.41 4.26
497 503 2.415168 TCGATCCGATGTGCTTGTTTTC 59.585 45.455 0.00 0.00 0.00 2.29
547 553 0.741326 TCCTCGAATCTGCTTCCTCG 59.259 55.000 0.00 0.00 0.00 4.63
579 585 0.171903 AGTGAAATCCGACGGTACCG 59.828 55.000 32.22 32.22 46.03 4.02
586 592 2.785258 GCCGCAGTGAAATCCGAC 59.215 61.111 0.00 0.00 0.00 4.79
777 793 2.108075 CTCTGCTCTCTCCCCTCATCTA 59.892 54.545 0.00 0.00 0.00 1.98
783 799 1.381599 CTGCTCTGCTCTCTCCCCT 60.382 63.158 0.00 0.00 0.00 4.79
812 828 0.253327 AGCTCACGGGGAAATCCTTC 59.747 55.000 0.00 0.00 35.95 3.46
821 837 1.826385 AAATTCTTGAGCTCACGGGG 58.174 50.000 18.03 7.35 0.00 5.73
892 909 4.189188 AGATCGCGAACGGACGGG 62.189 66.667 15.24 12.54 45.12 5.28
1016 1033 0.250770 GGAAGGGTTTCAGCGAAGGT 60.251 55.000 0.00 0.00 41.48 3.50
1024 1041 1.001393 GCCATCGGGAAGGGTTTCA 60.001 57.895 0.00 0.00 34.90 2.69
1620 1641 4.115199 ACCTTGCCCCTCATCCGC 62.115 66.667 0.00 0.00 0.00 5.54
1624 1645 1.064166 CAATGAGACCTTGCCCCTCAT 60.064 52.381 0.00 0.00 46.23 2.90
1657 1678 9.167311 CTAGAGAACCTTGTTTGCACTAATAAT 57.833 33.333 0.00 0.00 0.00 1.28
1659 1680 7.676947 ACTAGAGAACCTTGTTTGCACTAATA 58.323 34.615 0.00 0.00 0.00 0.98
1660 1681 6.534634 ACTAGAGAACCTTGTTTGCACTAAT 58.465 36.000 0.00 0.00 0.00 1.73
1661 1682 5.925509 ACTAGAGAACCTTGTTTGCACTAA 58.074 37.500 0.00 0.00 0.00 2.24
1662 1683 5.546621 ACTAGAGAACCTTGTTTGCACTA 57.453 39.130 0.00 0.00 0.00 2.74
1663 1684 4.423625 ACTAGAGAACCTTGTTTGCACT 57.576 40.909 0.00 0.00 0.00 4.40
1664 1685 4.335594 ACAACTAGAGAACCTTGTTTGCAC 59.664 41.667 0.00 0.00 38.47 4.57
1665 1686 4.523083 ACAACTAGAGAACCTTGTTTGCA 58.477 39.130 0.00 0.00 38.47 4.08
1666 1687 5.065988 TGAACAACTAGAGAACCTTGTTTGC 59.934 40.000 0.00 0.00 38.47 3.68
1667 1688 6.316390 AGTGAACAACTAGAGAACCTTGTTTG 59.684 38.462 0.00 0.00 38.47 2.93
1668 1689 6.415573 AGTGAACAACTAGAGAACCTTGTTT 58.584 36.000 0.00 0.00 38.47 2.83
1669 1690 5.990668 AGTGAACAACTAGAGAACCTTGTT 58.009 37.500 6.60 6.60 40.56 2.83
1747 1777 3.801698 AGTGCTTGTATGGCTACATCAG 58.198 45.455 0.00 0.00 37.68 2.90
1773 1804 7.917505 AGCATATCTACAAAGCAGTTAAAATGC 59.082 33.333 5.91 5.91 44.18 3.56
1856 1888 2.633967 CTGATCTATCCTGCTTCTGGCT 59.366 50.000 0.00 0.00 42.39 4.75
1927 1959 7.066766 AGCCACTCAAATCAAGATGAAATAGTC 59.933 37.037 0.00 0.00 0.00 2.59
1951 1983 9.823098 CAAATATAACTAGATTGAGCATGAAGC 57.177 33.333 0.00 0.00 46.19 3.86
2056 2088 3.088194 TCACGATAATCAGCCGGTAAC 57.912 47.619 1.90 0.00 0.00 2.50
2113 2152 6.299805 TCCTCAACATTAGCAGAAGTATGT 57.700 37.500 0.00 0.00 32.89 2.29
2478 2523 0.404040 AGGAATTTGAGGGCGGTGAA 59.596 50.000 0.00 0.00 0.00 3.18
2490 2536 4.162651 AGGCAATTCAACAGGAGGAATTT 58.837 39.130 0.00 0.00 40.68 1.82
2499 2545 2.298163 AGCAAGGAAGGCAATTCAACAG 59.702 45.455 3.64 0.00 39.91 3.16
2509 2555 0.038801 GTTCAAGCAGCAAGGAAGGC 60.039 55.000 0.00 0.00 0.00 4.35
2510 2556 0.239347 CGTTCAAGCAGCAAGGAAGG 59.761 55.000 0.00 0.00 0.00 3.46
2519 2565 1.432514 TGAAGCTAGCGTTCAAGCAG 58.567 50.000 20.34 0.00 41.32 4.24
2553 2600 7.846066 AGTCATAACTCAAGCTAAGAAGACAT 58.154 34.615 3.19 0.00 0.00 3.06
2581 2629 5.988287 TCATCATGTATTAGGACAACTGCA 58.012 37.500 0.00 0.00 31.83 4.41
2837 2885 8.541133 AAACTATAGAGAAGCAAAAGACTGAC 57.459 34.615 6.78 0.00 0.00 3.51
3085 3133 1.830279 TCTCTGCATTTCAAGCCCAG 58.170 50.000 0.00 0.00 0.00 4.45
3183 3231 7.120285 CACAACAAGAATAATGAGGACACATCT 59.880 37.037 0.00 0.00 0.00 2.90
3189 3237 5.886960 AGCACAACAAGAATAATGAGGAC 57.113 39.130 0.00 0.00 0.00 3.85
3255 3303 0.035317 AATCACGCCTGACAAGCTCA 59.965 50.000 0.00 0.00 0.00 4.26
3276 3324 1.442520 CCAACCGTCATTTGCAGCG 60.443 57.895 0.00 0.00 0.00 5.18
3279 3327 0.109532 TCTCCCAACCGTCATTTGCA 59.890 50.000 0.00 0.00 0.00 4.08
3346 3394 3.523157 TCCCAGCAGTGAAATGAATAGGA 59.477 43.478 0.00 0.00 0.00 2.94
3355 3403 2.655090 TTCACATCCCAGCAGTGAAA 57.345 45.000 4.90 0.00 45.95 2.69
3450 3505 5.480422 GGATAAGTTCAAAAACATCCCACCT 59.520 40.000 0.00 0.00 37.88 4.00
3465 3520 8.451908 AAGGCAATAACTATGTGGATAAGTTC 57.548 34.615 0.00 0.00 0.00 3.01
3473 3528 6.959639 ACCAATAAGGCAATAACTATGTGG 57.040 37.500 0.00 0.00 43.14 4.17
3474 3529 8.465999 TGAAACCAATAAGGCAATAACTATGTG 58.534 33.333 0.00 0.00 43.14 3.21
3477 3535 8.823220 AGTGAAACCAATAAGGCAATAACTAT 57.177 30.769 0.00 0.00 43.14 2.12
3521 3579 4.019860 ACACCATACAAGCAGAACAGAGAT 60.020 41.667 0.00 0.00 0.00 2.75
3522 3580 3.324846 ACACCATACAAGCAGAACAGAGA 59.675 43.478 0.00 0.00 0.00 3.10
3540 3598 3.684788 CACCAGTAGCAATCAAGTACACC 59.315 47.826 0.00 0.00 0.00 4.16
3545 3603 2.566833 TGCACCAGTAGCAATCAAGT 57.433 45.000 0.00 0.00 39.39 3.16
3548 3606 3.452264 ACTCTATGCACCAGTAGCAATCA 59.548 43.478 0.00 0.00 46.27 2.57
3583 3645 7.776030 TGTTACACAAGATCAAAAGGGTAAGAA 59.224 33.333 0.00 0.00 0.00 2.52
3589 3651 8.110860 AGTAATGTTACACAAGATCAAAAGGG 57.889 34.615 5.77 0.00 36.12 3.95
3603 3665 7.042051 GCAAAGAGAAGTGTGAGTAATGTTACA 60.042 37.037 5.77 0.00 36.12 2.41
3622 3684 9.213799 GGATATCCTGTAGAATTTAGCAAAGAG 57.786 37.037 14.97 0.00 0.00 2.85
3623 3685 8.938883 AGGATATCCTGTAGAATTTAGCAAAGA 58.061 33.333 23.95 0.00 46.55 2.52
3752 3814 2.436646 CGACCATGCACAGGGACC 60.437 66.667 8.56 0.00 35.92 4.46
3809 3871 2.068519 CTGAGCACGCATAGTTGTTCA 58.931 47.619 0.00 0.00 0.00 3.18
3821 3883 8.328864 GTCCTAATTTTTACTATTCTGAGCACG 58.671 37.037 0.00 0.00 0.00 5.34
3853 3966 4.099419 TCATTCAGTCACTGTACACACACT 59.901 41.667 4.28 0.00 32.61 3.55
3860 3974 6.591834 AGCAAGTATTCATTCAGTCACTGTAC 59.408 38.462 4.28 0.00 32.61 2.90
3894 4008 4.522789 ACACCATGGTAAAAAGCCTTAGTG 59.477 41.667 19.28 2.10 0.00 2.74
3895 4009 4.736473 ACACCATGGTAAAAAGCCTTAGT 58.264 39.130 19.28 3.45 0.00 2.24
3896 4010 6.827586 TTACACCATGGTAAAAAGCCTTAG 57.172 37.500 19.28 2.73 30.68 2.18
3897 4011 7.233757 ACAATTACACCATGGTAAAAAGCCTTA 59.766 33.333 19.28 0.00 36.86 2.69
3899 4013 5.542251 ACAATTACACCATGGTAAAAAGCCT 59.458 36.000 19.28 0.00 36.86 4.58
3900 4014 5.789521 ACAATTACACCATGGTAAAAAGCC 58.210 37.500 19.28 0.00 36.86 4.35
3901 4015 6.147000 CCAACAATTACACCATGGTAAAAAGC 59.853 38.462 19.28 0.00 36.86 3.51
3902 4016 6.147000 GCCAACAATTACACCATGGTAAAAAG 59.853 38.462 19.28 7.40 36.86 2.27
3903 4017 5.992217 GCCAACAATTACACCATGGTAAAAA 59.008 36.000 19.28 12.38 36.86 1.94
3909 4025 3.130340 GGTAGCCAACAATTACACCATGG 59.870 47.826 11.19 11.19 0.00 3.66
3965 4081 2.157738 GAAACAATCCAGCAGCAGAGT 58.842 47.619 0.00 0.00 0.00 3.24
3976 4092 2.819608 TGTTAGCCAGCTGAAACAATCC 59.180 45.455 17.39 0.00 0.00 3.01
4021 4137 2.768344 AGCGTCCCATACCCCTGG 60.768 66.667 0.00 0.00 35.95 4.45
4201 4317 5.973899 TTCTAGTTGCAATACAATTGCCA 57.026 34.783 18.99 8.01 44.32 4.92
4274 4393 8.233868 AGGCAAACACAAAACTTTCAAAATAAC 58.766 29.630 0.00 0.00 0.00 1.89
4275 4394 8.329203 AGGCAAACACAAAACTTTCAAAATAA 57.671 26.923 0.00 0.00 0.00 1.40
4276 4395 7.913674 AGGCAAACACAAAACTTTCAAAATA 57.086 28.000 0.00 0.00 0.00 1.40
4286 4405 4.562789 GTCTGAAGAAGGCAAACACAAAAC 59.437 41.667 0.00 0.00 0.00 2.43
4340 4460 2.035066 GCATGGATTACACCATTCTGCC 59.965 50.000 0.00 0.00 47.00 4.85
4364 4488 7.424227 AACTAAATCGTCGTGTTTAATTGGA 57.576 32.000 0.00 0.00 0.00 3.53
4372 4521 7.878477 TCTCAAATAACTAAATCGTCGTGTT 57.122 32.000 0.00 0.00 0.00 3.32
4514 4663 9.528489 TGAAAATAAGGCTAAGAGGTAAACATT 57.472 29.630 0.00 0.00 0.00 2.71
4546 4705 5.674525 TCACCATGTTTCTAGGAATAGCTG 58.325 41.667 0.00 0.00 0.00 4.24
4570 4729 8.925161 GAGATGGTCTCTTAGCATAATATGTC 57.075 38.462 1.92 0.00 46.22 3.06
4637 4799 6.005823 TCATGCAGGATAAATGATAAGGTGG 58.994 40.000 0.00 0.00 0.00 4.61
4645 4807 6.692849 AGGAGTATCATGCAGGATAAATGA 57.307 37.500 21.69 4.43 36.25 2.57
4653 4815 4.382470 GGTGCTATAGGAGTATCATGCAGG 60.382 50.000 1.04 0.00 36.25 4.85
4656 4818 4.808414 TGGTGCTATAGGAGTATCATGC 57.192 45.455 1.04 0.00 36.25 4.06
4660 4822 7.363094 GGAGTACAATGGTGCTATAGGAGTATC 60.363 44.444 1.04 0.00 40.28 2.24
4662 4824 5.773680 GGAGTACAATGGTGCTATAGGAGTA 59.226 44.000 1.04 0.00 40.28 2.59
4666 4828 3.904339 AGGGAGTACAATGGTGCTATAGG 59.096 47.826 1.04 0.00 40.28 2.57
4667 4829 4.021016 GGAGGGAGTACAATGGTGCTATAG 60.021 50.000 0.00 0.00 40.28 1.31
4677 4842 2.249309 AGGAACGGAGGGAGTACAAT 57.751 50.000 0.00 0.00 0.00 2.71
4702 4867 9.847224 ACTTGTTGAAATCTCTAAAAAGACCTA 57.153 29.630 0.00 0.00 0.00 3.08
4703 4868 8.624776 CACTTGTTGAAATCTCTAAAAAGACCT 58.375 33.333 0.00 0.00 0.00 3.85
4704 4869 8.621286 TCACTTGTTGAAATCTCTAAAAAGACC 58.379 33.333 0.00 0.00 0.00 3.85
4713 4878 8.873830 CGTATGTAATCACTTGTTGAAATCTCT 58.126 33.333 0.00 0.00 37.92 3.10
4714 4879 8.116753 CCGTATGTAATCACTTGTTGAAATCTC 58.883 37.037 0.00 0.00 37.92 2.75
4715 4880 7.822334 TCCGTATGTAATCACTTGTTGAAATCT 59.178 33.333 0.00 0.00 37.92 2.40
4716 4881 7.970384 TCCGTATGTAATCACTTGTTGAAATC 58.030 34.615 0.00 0.00 37.92 2.17
4717 4882 7.915293 TCCGTATGTAATCACTTGTTGAAAT 57.085 32.000 0.00 0.00 37.92 2.17
4718 4883 7.822334 AGATCCGTATGTAATCACTTGTTGAAA 59.178 33.333 0.00 0.00 37.92 2.69
4719 4884 7.327975 AGATCCGTATGTAATCACTTGTTGAA 58.672 34.615 0.00 0.00 37.92 2.69
4720 4885 6.873997 AGATCCGTATGTAATCACTTGTTGA 58.126 36.000 0.00 0.00 39.11 3.18
4721 4886 7.704899 TGTAGATCCGTATGTAATCACTTGTTG 59.295 37.037 0.00 0.00 0.00 3.33
4722 4887 7.705325 GTGTAGATCCGTATGTAATCACTTGTT 59.295 37.037 0.00 0.00 0.00 2.83
4723 4888 7.068348 AGTGTAGATCCGTATGTAATCACTTGT 59.932 37.037 0.00 0.00 0.00 3.16
4724 4889 7.426410 AGTGTAGATCCGTATGTAATCACTTG 58.574 38.462 0.00 0.00 0.00 3.16
4725 4890 7.502895 AGAGTGTAGATCCGTATGTAATCACTT 59.497 37.037 0.00 0.00 33.55 3.16
4726 4891 6.999272 AGAGTGTAGATCCGTATGTAATCACT 59.001 38.462 0.00 0.00 35.58 3.41
4727 4892 7.204496 AGAGTGTAGATCCGTATGTAATCAC 57.796 40.000 0.00 0.00 0.00 3.06
4728 4893 8.913487 TTAGAGTGTAGATCCGTATGTAATCA 57.087 34.615 0.00 0.00 0.00 2.57
4802 4967 9.780186 CTCCTCCGTTCCTAAATATAATTCTTT 57.220 33.333 0.00 0.00 0.00 2.52
4803 4968 8.935741 ACTCCTCCGTTCCTAAATATAATTCTT 58.064 33.333 0.00 0.00 0.00 2.52
4804 4969 8.493787 ACTCCTCCGTTCCTAAATATAATTCT 57.506 34.615 0.00 0.00 0.00 2.40
4805 4970 9.636879 GTACTCCTCCGTTCCTAAATATAATTC 57.363 37.037 0.00 0.00 0.00 2.17
4806 4971 9.151177 TGTACTCCTCCGTTCCTAAATATAATT 57.849 33.333 0.00 0.00 0.00 1.40
4807 4972 8.716674 TGTACTCCTCCGTTCCTAAATATAAT 57.283 34.615 0.00 0.00 0.00 1.28
4808 4973 8.582437 CATGTACTCCTCCGTTCCTAAATATAA 58.418 37.037 0.00 0.00 0.00 0.98
4809 4974 7.309621 GCATGTACTCCTCCGTTCCTAAATATA 60.310 40.741 0.00 0.00 0.00 0.86
4810 4975 6.518537 GCATGTACTCCTCCGTTCCTAAATAT 60.519 42.308 0.00 0.00 0.00 1.28
4811 4976 5.221382 GCATGTACTCCTCCGTTCCTAAATA 60.221 44.000 0.00 0.00 0.00 1.40
4812 4977 4.443034 GCATGTACTCCTCCGTTCCTAAAT 60.443 45.833 0.00 0.00 0.00 1.40
4813 4978 3.118884 GCATGTACTCCTCCGTTCCTAAA 60.119 47.826 0.00 0.00 0.00 1.85
4814 4979 2.429610 GCATGTACTCCTCCGTTCCTAA 59.570 50.000 0.00 0.00 0.00 2.69
4815 4980 2.029623 GCATGTACTCCTCCGTTCCTA 58.970 52.381 0.00 0.00 0.00 2.94
4816 4981 0.824759 GCATGTACTCCTCCGTTCCT 59.175 55.000 0.00 0.00 0.00 3.36
4817 4982 0.179081 GGCATGTACTCCTCCGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
4818 4983 0.179081 GGGCATGTACTCCTCCGTTC 60.179 60.000 0.00 0.00 0.00 3.95
4819 4984 0.617820 AGGGCATGTACTCCTCCGTT 60.618 55.000 0.00 0.00 0.00 4.44
4820 4985 0.617820 AAGGGCATGTACTCCTCCGT 60.618 55.000 0.00 0.00 0.00 4.69
4821 4986 0.179073 CAAGGGCATGTACTCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
4822 4987 0.464554 GCAAGGGCATGTACTCCTCC 60.465 60.000 0.00 0.00 40.72 4.30
4823 4988 0.464554 GGCAAGGGCATGTACTCCTC 60.465 60.000 0.00 0.00 43.71 3.71
4824 4989 1.609783 GGCAAGGGCATGTACTCCT 59.390 57.895 0.00 0.00 43.71 3.69
4825 4990 1.453928 GGGCAAGGGCATGTACTCC 60.454 63.158 0.00 0.00 43.71 3.85
4826 4991 1.819632 CGGGCAAGGGCATGTACTC 60.820 63.158 0.00 0.00 43.71 2.59
4827 4992 2.272146 CGGGCAAGGGCATGTACT 59.728 61.111 0.00 0.00 43.71 2.73
4828 4993 3.518068 GCGGGCAAGGGCATGTAC 61.518 66.667 0.00 0.00 43.71 2.90
4829 4994 4.040426 TGCGGGCAAGGGCATGTA 62.040 61.111 0.00 0.00 43.71 2.29
4833 4998 4.445710 ATCATGCGGGCAAGGGCA 62.446 61.111 0.00 0.00 43.71 5.36
4834 4999 3.908081 CATCATGCGGGCAAGGGC 61.908 66.667 0.00 0.00 40.13 5.19
4835 5000 2.440796 ACATCATGCGGGCAAGGG 60.441 61.111 0.00 0.00 0.00 3.95
4836 5001 0.747644 TACACATCATGCGGGCAAGG 60.748 55.000 0.00 0.00 0.00 3.61
4837 5002 1.002142 CATACACATCATGCGGGCAAG 60.002 52.381 0.00 0.00 0.00 4.01
4838 5003 1.023502 CATACACATCATGCGGGCAA 58.976 50.000 0.00 0.00 0.00 4.52
4839 5004 1.446516 GCATACACATCATGCGGGCA 61.447 55.000 0.00 0.00 39.43 5.36
4840 5005 1.283793 GCATACACATCATGCGGGC 59.716 57.895 0.00 0.00 39.43 6.13
4893 5058 6.098838 TGCACCTAGTGATCATTCATTACTCT 59.901 38.462 0.00 0.00 35.23 3.24
4914 5080 9.937175 GACTATTCCTGTAAATAATCTTTGCAC 57.063 33.333 0.00 0.00 0.00 4.57
4915 5081 9.120538 GGACTATTCCTGTAAATAATCTTTGCA 57.879 33.333 0.00 0.00 39.13 4.08
4916 5082 8.568794 GGGACTATTCCTGTAAATAATCTTTGC 58.431 37.037 0.00 0.00 42.38 3.68
4917 5083 9.627123 TGGGACTATTCCTGTAAATAATCTTTG 57.373 33.333 0.00 0.00 42.38 2.77
4920 5086 7.070821 ACGTGGGACTATTCCTGTAAATAATCT 59.929 37.037 0.00 0.00 42.38 2.40
4921 5087 7.215085 ACGTGGGACTATTCCTGTAAATAATC 58.785 38.462 0.00 0.00 42.38 1.75
4922 5088 7.133133 ACGTGGGACTATTCCTGTAAATAAT 57.867 36.000 0.00 0.00 42.38 1.28
4924 5090 5.657745 TGACGTGGGACTATTCCTGTAAATA 59.342 40.000 0.00 0.00 42.38 1.40
4925 5091 4.468510 TGACGTGGGACTATTCCTGTAAAT 59.531 41.667 0.00 0.00 42.38 1.40
4926 5092 3.833650 TGACGTGGGACTATTCCTGTAAA 59.166 43.478 0.00 0.00 42.38 2.01
4935 5101 1.183549 GGAGTGTGACGTGGGACTAT 58.816 55.000 0.00 0.00 0.00 2.12
4955 5121 8.367911 TCACTGTCCGATAAAAATAGCAGATAT 58.632 33.333 0.00 0.00 0.00 1.63
4958 5124 5.972935 TCACTGTCCGATAAAAATAGCAGA 58.027 37.500 0.00 0.00 0.00 4.26
4960 5126 5.730550 ACTCACTGTCCGATAAAAATAGCA 58.269 37.500 0.00 0.00 0.00 3.49
4966 5132 5.471556 TTGGTACTCACTGTCCGATAAAA 57.528 39.130 0.00 0.00 0.00 1.52
4985 5151 0.522495 CGCGCCCGAAAAACTATTGG 60.522 55.000 0.00 0.00 36.29 3.16
5064 5408 7.029563 CAGTATGTATTCCTTTCTGGCAAAAC 58.970 38.462 0.00 0.00 35.26 2.43



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.