Multiple sequence alignment - TraesCS2B01G361400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G361400 chr2B 100.000 3527 0 0 1 3527 514368920 514372446 0.000000e+00 6514.0
1 TraesCS2B01G361400 chr2B 74.917 303 66 10 1958 2255 719199750 719199453 2.860000e-26 130.0
2 TraesCS2B01G361400 chr2D 95.851 1928 72 5 878 2801 437910870 437912793 0.000000e+00 3110.0
3 TraesCS2B01G361400 chr2D 87.234 188 24 0 2616 2803 46191293 46191106 7.670000e-52 215.0
4 TraesCS2B01G361400 chr2D 86.486 185 23 2 2616 2799 576274128 576273945 5.970000e-48 202.0
5 TraesCS2B01G361400 chr2D 77.660 282 58 4 1928 2205 593164611 593164331 2.180000e-37 167.0
6 TraesCS2B01G361400 chr2A 93.349 1654 104 4 1153 2801 550861138 550859486 0.000000e+00 2440.0
7 TraesCS2B01G361400 chr2A 82.726 851 129 14 6 847 555347389 555346548 0.000000e+00 741.0
8 TraesCS2B01G361400 chr2A 88.089 403 35 5 2803 3193 493407776 493408177 1.920000e-127 466.0
9 TraesCS2B01G361400 chr2A 93.312 314 17 3 857 1166 550861611 550861298 8.920000e-126 460.0
10 TraesCS2B01G361400 chr2A 97.071 239 7 0 3289 3527 684243971 684243733 1.520000e-108 403.0
11 TraesCS2B01G361400 chr2A 96.250 240 9 0 3288 3527 68253669 68253430 9.180000e-106 394.0
12 TraesCS2B01G361400 chr2A 75.887 282 63 5 1928 2205 727687129 727686849 4.750000e-29 139.0
13 TraesCS2B01G361400 chr5B 95.070 852 35 4 1 849 225109514 225110361 0.000000e+00 1334.0
14 TraesCS2B01G361400 chr5B 94.488 254 11 3 3274 3527 56365378 56365628 4.270000e-104 388.0
15 TraesCS2B01G361400 chr5B 82.588 425 31 16 2804 3187 596069143 596069565 5.640000e-88 335.0
16 TraesCS2B01G361400 chr5B 86.813 182 24 0 2616 2797 302215904 302216085 1.660000e-48 204.0
17 TraesCS2B01G361400 chr6B 88.367 851 93 4 1 848 692198289 692197442 0.000000e+00 1018.0
18 TraesCS2B01G361400 chr6B 87.793 852 98 4 1 849 691860398 691861246 0.000000e+00 992.0
19 TraesCS2B01G361400 chr4B 88.457 849 88 6 6 848 649535145 649534301 0.000000e+00 1016.0
20 TraesCS2B01G361400 chr4B 88.350 412 27 6 2802 3193 663789917 663790327 3.190000e-130 475.0
21 TraesCS2B01G361400 chr4B 95.294 255 9 1 3273 3527 299463159 299463410 5.480000e-108 401.0
22 TraesCS2B01G361400 chr4B 73.577 685 154 22 181 848 115395353 115394679 1.640000e-58 237.0
23 TraesCS2B01G361400 chr5D 86.972 852 103 4 1 848 12583022 12582175 0.000000e+00 952.0
24 TraesCS2B01G361400 chr5D 78.836 189 36 3 659 847 367653146 367653330 1.330000e-24 124.0
25 TraesCS2B01G361400 chr3D 86.137 844 112 2 8 848 418419607 418418766 0.000000e+00 905.0
26 TraesCS2B01G361400 chr3D 87.468 391 29 9 2804 3193 160523063 160523434 1.940000e-117 433.0
27 TraesCS2B01G361400 chr3D 79.897 194 31 7 659 849 124504046 124503858 6.140000e-28 135.0
28 TraesCS2B01G361400 chr3D 80.208 192 25 10 659 846 174901534 174901716 7.940000e-27 132.0
29 TraesCS2B01G361400 chr3D 79.885 174 23 10 681 849 128538351 128538517 2.220000e-22 117.0
30 TraesCS2B01G361400 chr4A 87.344 719 86 5 129 847 555557090 555557803 0.000000e+00 819.0
31 TraesCS2B01G361400 chr1A 86.005 736 98 4 114 848 578350542 578351273 0.000000e+00 784.0
32 TraesCS2B01G361400 chr1A 90.805 435 36 3 413 847 19129199 19128769 2.360000e-161 579.0
33 TraesCS2B01G361400 chr1A 86.042 523 70 1 1 520 554845650 554846172 3.080000e-155 558.0
34 TraesCS2B01G361400 chr1A 89.487 409 21 6 2804 3192 326025144 326024738 6.800000e-137 497.0
35 TraesCS2B01G361400 chr1A 90.801 337 28 3 516 852 554871740 554872073 6.950000e-122 448.0
36 TraesCS2B01G361400 chr1A 95.600 250 8 3 3278 3527 271884692 271884938 7.090000e-107 398.0
37 TraesCS2B01G361400 chr1A 93.701 254 16 0 3274 3527 49093816 49093563 7.140000e-102 381.0
38 TraesCS2B01G361400 chr1A 88.095 84 7 1 5 85 578350458 578350541 2.900000e-16 97.1
39 TraesCS2B01G361400 chr6A 83.236 853 137 3 1 849 609835763 609836613 0.000000e+00 778.0
40 TraesCS2B01G361400 chr6A 95.600 250 8 3 3278 3527 38448410 38448656 7.090000e-107 398.0
41 TraesCS2B01G361400 chr6A 85.052 194 27 2 2616 2807 567179376 567179569 2.780000e-46 196.0
42 TraesCS2B01G361400 chr1D 86.640 509 63 4 340 847 20086511 20087015 3.080000e-155 558.0
43 TraesCS2B01G361400 chr4D 91.272 401 24 3 2802 3192 500007223 500006824 1.440000e-148 536.0
44 TraesCS2B01G361400 chr4D 90.299 402 27 4 2802 3192 505966972 505966572 1.880000e-142 516.0
45 TraesCS2B01G361400 chr4D 88.586 403 34 3 2802 3192 298111915 298111513 2.460000e-131 479.0
46 TraesCS2B01G361400 chr3A 90.773 401 23 4 2802 3192 716129725 716130121 1.120000e-144 523.0
47 TraesCS2B01G361400 chr3A 95.600 250 8 3 3278 3527 704769493 704769739 7.090000e-107 398.0
48 TraesCS2B01G361400 chr6D 89.706 408 32 2 2812 3210 163327907 163328313 2.430000e-141 512.0
49 TraesCS2B01G361400 chr6D 87.955 357 26 7 2802 3144 141593078 141592725 4.240000e-109 405.0
50 TraesCS2B01G361400 chr3B 90.024 411 19 9 2801 3192 815466848 815467255 2.430000e-141 512.0
51 TraesCS2B01G361400 chr3B 88.647 414 24 8 2802 3193 800103748 800104160 1.900000e-132 483.0
52 TraesCS2B01G361400 chr1B 90.123 405 25 7 2802 3196 278613564 278613165 2.430000e-141 512.0
53 TraesCS2B01G361400 chr1B 87.363 182 23 0 2616 2797 105938075 105938256 3.570000e-50 209.0
54 TraesCS2B01G361400 chr7D 89.294 411 24 4 2802 3192 538352568 538352158 6.800000e-137 497.0
55 TraesCS2B01G361400 chr7D 76.190 189 43 2 659 847 4699438 4699252 8.060000e-17 99.0
56 TraesCS2B01G361400 chr5A 95.652 253 10 1 3275 3527 451722992 451722741 4.240000e-109 405.0
57 TraesCS2B01G361400 chr5A 90.204 245 14 2 2802 3036 436355433 436355677 9.510000e-81 311.0
58 TraesCS2B01G361400 chr7A 86.316 190 25 1 2616 2805 56714773 56714585 4.620000e-49 206.0
59 TraesCS2B01G361400 chr7A 86.740 181 24 0 2616 2796 670951172 670951352 5.970000e-48 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G361400 chr2B 514368920 514372446 3526 False 6514.00 6514 100.0000 1 3527 1 chr2B.!!$F1 3526
1 TraesCS2B01G361400 chr2D 437910870 437912793 1923 False 3110.00 3110 95.8510 878 2801 1 chr2D.!!$F1 1923
2 TraesCS2B01G361400 chr2A 550859486 550861611 2125 True 1450.00 2440 93.3305 857 2801 2 chr2A.!!$R5 1944
3 TraesCS2B01G361400 chr2A 555346548 555347389 841 True 741.00 741 82.7260 6 847 1 chr2A.!!$R2 841
4 TraesCS2B01G361400 chr5B 225109514 225110361 847 False 1334.00 1334 95.0700 1 849 1 chr5B.!!$F2 848
5 TraesCS2B01G361400 chr6B 692197442 692198289 847 True 1018.00 1018 88.3670 1 848 1 chr6B.!!$R1 847
6 TraesCS2B01G361400 chr6B 691860398 691861246 848 False 992.00 992 87.7930 1 849 1 chr6B.!!$F1 848
7 TraesCS2B01G361400 chr4B 649534301 649535145 844 True 1016.00 1016 88.4570 6 848 1 chr4B.!!$R2 842
8 TraesCS2B01G361400 chr4B 115394679 115395353 674 True 237.00 237 73.5770 181 848 1 chr4B.!!$R1 667
9 TraesCS2B01G361400 chr5D 12582175 12583022 847 True 952.00 952 86.9720 1 848 1 chr5D.!!$R1 847
10 TraesCS2B01G361400 chr3D 418418766 418419607 841 True 905.00 905 86.1370 8 848 1 chr3D.!!$R2 840
11 TraesCS2B01G361400 chr4A 555557090 555557803 713 False 819.00 819 87.3440 129 847 1 chr4A.!!$F1 718
12 TraesCS2B01G361400 chr1A 554845650 554846172 522 False 558.00 558 86.0420 1 520 1 chr1A.!!$F2 519
13 TraesCS2B01G361400 chr1A 578350458 578351273 815 False 440.55 784 87.0500 5 848 2 chr1A.!!$F4 843
14 TraesCS2B01G361400 chr6A 609835763 609836613 850 False 778.00 778 83.2360 1 849 1 chr6A.!!$F3 848
15 TraesCS2B01G361400 chr1D 20086511 20087015 504 False 558.00 558 86.6400 340 847 1 chr1D.!!$F1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
485 499 0.532573 GATCAAGGGTCTGAGCGACA 59.467 55.0 0.18 0.0 44.68 4.35 F
1600 1802 0.475475 TCCTGAGCTATGCCAATGGG 59.525 55.0 0.00 0.0 37.18 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1867 2069 0.176680 CTGCGATCAAGCCACCTACT 59.823 55.0 0.00 0.0 36.02 2.57 R
3156 3362 0.036671 CTCACAGGAGCATCTGCACA 60.037 55.0 4.79 0.0 45.16 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 82 3.181440 TGGCACTTTCTGACCAATCTCTT 60.181 43.478 0.00 0.00 0.00 2.85
140 146 6.290294 ACTGGCTTTTTAATCTGCATGATT 57.710 33.333 13.51 13.51 46.22 2.57
316 323 1.305718 AGGGACTGAGAGGAGGCAC 60.306 63.158 0.00 0.00 37.18 5.01
383 390 5.067674 GGTTGCAGCAAGATAAATGTGGATA 59.932 40.000 8.49 0.00 0.00 2.59
458 472 2.102252 GGTTGTTTTCAGGGTGCATCAA 59.898 45.455 0.00 0.00 0.00 2.57
459 473 3.244181 GGTTGTTTTCAGGGTGCATCAAT 60.244 43.478 0.00 0.00 0.00 2.57
485 499 0.532573 GATCAAGGGTCTGAGCGACA 59.467 55.000 0.18 0.00 44.68 4.35
839 863 1.354040 AAGCTTCGCGAGATTGTCTG 58.646 50.000 9.59 0.00 41.60 3.51
921 946 3.766691 GCCTAACCTCGCGACCCA 61.767 66.667 3.71 0.00 0.00 4.51
940 968 6.290294 ACCCATCAATCAATCAAAAAGAGG 57.710 37.500 0.00 0.00 0.00 3.69
975 1003 3.288290 CGGCGGCGAGGTCTCTAT 61.288 66.667 29.19 0.00 0.00 1.98
985 1013 2.879026 CGAGGTCTCTATCGATCAACCA 59.121 50.000 0.00 0.00 41.40 3.67
990 1018 1.338337 CTCTATCGATCAACCACGCCT 59.662 52.381 0.00 0.00 0.00 5.52
993 1021 1.613317 ATCGATCAACCACGCCTGGA 61.613 55.000 8.88 0.00 40.55 3.86
1066 1094 2.771762 AGGAGCTGGATGAGGCCC 60.772 66.667 0.00 0.00 0.00 5.80
1067 1095 2.771762 GGAGCTGGATGAGGCCCT 60.772 66.667 0.00 0.00 0.00 5.19
1115 1143 0.764369 CATCCGGAGAAGGGGATGGA 60.764 60.000 11.34 0.00 37.09 3.41
1234 1436 1.231958 GGTTGATTGCGTCCGGTCAA 61.232 55.000 0.00 5.14 0.00 3.18
1236 1438 1.199097 GTTGATTGCGTCCGGTCAATT 59.801 47.619 16.20 5.30 33.49 2.32
1542 1744 6.547880 ACAAGATCGTATTCTCCACTCTACAT 59.452 38.462 0.00 0.00 0.00 2.29
1600 1802 0.475475 TCCTGAGCTATGCCAATGGG 59.525 55.000 0.00 0.00 37.18 4.00
1601 1803 0.538977 CCTGAGCTATGCCAATGGGG 60.539 60.000 0.00 0.00 40.85 4.96
1704 1906 0.967380 CCAGGAATGCCAAGGTGTCC 60.967 60.000 0.00 0.00 36.29 4.02
1755 1957 3.391382 GAGCGGGCAGGGTACACT 61.391 66.667 0.00 0.00 0.00 3.55
1758 1960 4.096003 CGGGCAGGGTACACTGGG 62.096 72.222 26.11 2.36 38.90 4.45
1861 2063 4.072839 CCTCTCATATGGTAGCGACTACA 58.927 47.826 15.62 5.83 38.58 2.74
1864 2066 5.131067 TCTCATATGGTAGCGACTACAACT 58.869 41.667 15.62 5.46 38.58 3.16
1865 2067 5.008712 TCTCATATGGTAGCGACTACAACTG 59.991 44.000 15.62 8.45 38.58 3.16
1866 2068 4.643334 TCATATGGTAGCGACTACAACTGT 59.357 41.667 15.62 0.00 38.58 3.55
1867 2069 5.824097 TCATATGGTAGCGACTACAACTGTA 59.176 40.000 15.62 0.00 38.58 2.74
2032 2234 4.814147 TGAATTTCTGTTTGTGTTGCACA 58.186 34.783 0.00 0.00 43.02 4.57
2255 2457 1.039856 GAGAGGCAGGAGGAGATGAC 58.960 60.000 0.00 0.00 0.00 3.06
2263 2465 0.460987 GGAGGAGATGACACCGCTTG 60.461 60.000 0.00 0.00 32.13 4.01
2279 2481 2.955660 CGCTTGTAGAGGAGGAAGAGAT 59.044 50.000 0.00 0.00 0.00 2.75
2345 2547 2.767505 ACAGAAACTCCTACGCAAAGG 58.232 47.619 0.00 0.00 38.06 3.11
2578 2780 7.721286 AAGAGAAGTAATGACACAAGTCTTG 57.279 36.000 11.17 11.17 45.20 3.02
2597 2799 1.133823 TGTTTCTCCCATGCGCCATAT 60.134 47.619 4.18 0.00 0.00 1.78
2598 2800 1.537202 GTTTCTCCCATGCGCCATATC 59.463 52.381 4.18 0.00 0.00 1.63
2704 2910 1.083489 CCAGGATCGCAAAAGCGTAA 58.917 50.000 9.80 0.00 34.52 3.18
2716 2922 5.053932 CGCAAAAGCGTAAATTCTATGAACG 60.054 40.000 1.13 0.00 36.67 3.95
2739 2945 6.952935 GAGAATCGTAGAATCACACAAGTT 57.047 37.500 0.00 0.00 43.58 2.66
2749 2955 7.440523 AGAATCACACAAGTTAGTTTGGATC 57.559 36.000 0.00 0.00 32.32 3.36
2758 2964 6.987992 ACAAGTTAGTTTGGATCGTAAAGTCA 59.012 34.615 5.09 0.00 32.32 3.41
2801 3007 5.763204 TCTTGATTCTAACAACCTTGTGTCC 59.237 40.000 0.00 0.00 41.31 4.02
2802 3008 4.062293 TGATTCTAACAACCTTGTGTCCG 58.938 43.478 0.00 0.00 41.31 4.79
2803 3009 3.823281 TTCTAACAACCTTGTGTCCGA 57.177 42.857 0.00 0.00 41.31 4.55
2804 3010 3.823281 TCTAACAACCTTGTGTCCGAA 57.177 42.857 0.00 0.00 41.31 4.30
2805 3011 4.345859 TCTAACAACCTTGTGTCCGAAT 57.654 40.909 0.00 0.00 41.31 3.34
2806 3012 5.471556 TCTAACAACCTTGTGTCCGAATA 57.528 39.130 0.00 0.00 41.31 1.75
2807 3013 6.045072 TCTAACAACCTTGTGTCCGAATAT 57.955 37.500 0.00 0.00 41.31 1.28
2808 3014 6.103997 TCTAACAACCTTGTGTCCGAATATC 58.896 40.000 0.00 0.00 41.31 1.63
2809 3015 3.606687 ACAACCTTGTGTCCGAATATCC 58.393 45.455 0.00 0.00 40.49 2.59
2810 3016 3.008594 ACAACCTTGTGTCCGAATATCCA 59.991 43.478 0.00 0.00 40.49 3.41
2811 3017 3.992943 ACCTTGTGTCCGAATATCCAA 57.007 42.857 0.00 0.00 0.00 3.53
2812 3018 4.503714 ACCTTGTGTCCGAATATCCAAT 57.496 40.909 0.00 0.00 0.00 3.16
2813 3019 4.855340 ACCTTGTGTCCGAATATCCAATT 58.145 39.130 0.00 0.00 0.00 2.32
2814 3020 4.881850 ACCTTGTGTCCGAATATCCAATTC 59.118 41.667 0.00 0.00 0.00 2.17
2815 3021 5.126067 CCTTGTGTCCGAATATCCAATTCT 58.874 41.667 0.00 0.00 0.00 2.40
2816 3022 5.008019 CCTTGTGTCCGAATATCCAATTCTG 59.992 44.000 0.00 0.00 0.00 3.02
2817 3023 5.351948 TGTGTCCGAATATCCAATTCTGA 57.648 39.130 0.00 0.00 0.00 3.27
2818 3024 5.739959 TGTGTCCGAATATCCAATTCTGAA 58.260 37.500 0.00 0.00 0.00 3.02
2819 3025 5.584649 TGTGTCCGAATATCCAATTCTGAAC 59.415 40.000 0.00 0.00 0.00 3.18
2820 3026 5.007724 GTGTCCGAATATCCAATTCTGAACC 59.992 44.000 0.00 0.00 0.00 3.62
2821 3027 4.515567 GTCCGAATATCCAATTCTGAACCC 59.484 45.833 0.00 0.00 0.00 4.11
2822 3028 3.498397 CCGAATATCCAATTCTGAACCCG 59.502 47.826 0.00 0.00 0.00 5.28
2823 3029 3.498397 CGAATATCCAATTCTGAACCCGG 59.502 47.826 0.00 0.00 0.00 5.73
2824 3030 3.508845 ATATCCAATTCTGAACCCGGG 57.491 47.619 22.25 22.25 0.00 5.73
2825 3031 0.395724 ATCCAATTCTGAACCCGGGC 60.396 55.000 24.08 5.60 0.00 6.13
2826 3032 1.000896 CCAATTCTGAACCCGGGCT 60.001 57.895 24.08 8.98 0.00 5.19
2827 3033 1.032114 CCAATTCTGAACCCGGGCTC 61.032 60.000 24.08 20.45 0.00 4.70
2828 3034 0.322456 CAATTCTGAACCCGGGCTCA 60.322 55.000 24.84 24.84 0.00 4.26
2829 3035 0.625849 AATTCTGAACCCGGGCTCAT 59.374 50.000 26.46 9.88 0.00 2.90
2830 3036 0.181350 ATTCTGAACCCGGGCTCATC 59.819 55.000 26.46 16.86 0.00 2.92
2831 3037 0.909610 TTCTGAACCCGGGCTCATCT 60.910 55.000 26.46 0.00 0.00 2.90
2832 3038 1.153289 CTGAACCCGGGCTCATCTG 60.153 63.158 26.46 15.96 0.00 2.90
2833 3039 2.514824 GAACCCGGGCTCATCTGC 60.515 66.667 24.08 0.00 0.00 4.26
2834 3040 3.329542 GAACCCGGGCTCATCTGCA 62.330 63.158 24.08 0.00 34.04 4.41
2835 3041 3.628646 AACCCGGGCTCATCTGCAC 62.629 63.158 24.08 0.00 34.04 4.57
2836 3042 4.864334 CCCGGGCTCATCTGCACC 62.864 72.222 8.08 0.00 31.60 5.01
2837 3043 4.864334 CCGGGCTCATCTGCACCC 62.864 72.222 0.00 0.00 39.12 4.61
2840 3046 4.479993 GGCTCATCTGCACCCGCT 62.480 66.667 0.00 0.00 39.64 5.52
2841 3047 2.894387 GCTCATCTGCACCCGCTC 60.894 66.667 0.00 0.00 39.64 5.03
2842 3048 2.580815 CTCATCTGCACCCGCTCA 59.419 61.111 0.00 0.00 39.64 4.26
2843 3049 1.078918 CTCATCTGCACCCGCTCAA 60.079 57.895 0.00 0.00 39.64 3.02
2844 3050 1.078918 TCATCTGCACCCGCTCAAG 60.079 57.895 0.00 0.00 39.64 3.02
2845 3051 1.078918 CATCTGCACCCGCTCAAGA 60.079 57.895 0.00 0.00 39.64 3.02
2846 3052 0.674581 CATCTGCACCCGCTCAAGAA 60.675 55.000 0.00 0.00 39.64 2.52
2847 3053 0.036732 ATCTGCACCCGCTCAAGAAA 59.963 50.000 0.00 0.00 39.64 2.52
2848 3054 0.036732 TCTGCACCCGCTCAAGAAAT 59.963 50.000 0.00 0.00 39.64 2.17
2849 3055 1.277842 TCTGCACCCGCTCAAGAAATA 59.722 47.619 0.00 0.00 39.64 1.40
2850 3056 2.083774 CTGCACCCGCTCAAGAAATAA 58.916 47.619 0.00 0.00 39.64 1.40
2851 3057 2.684881 CTGCACCCGCTCAAGAAATAAT 59.315 45.455 0.00 0.00 39.64 1.28
2852 3058 3.088532 TGCACCCGCTCAAGAAATAATT 58.911 40.909 0.00 0.00 39.64 1.40
2853 3059 3.128589 TGCACCCGCTCAAGAAATAATTC 59.871 43.478 0.00 0.00 39.64 2.17
2854 3060 3.128589 GCACCCGCTCAAGAAATAATTCA 59.871 43.478 0.00 0.00 34.89 2.57
2855 3061 4.202050 GCACCCGCTCAAGAAATAATTCAT 60.202 41.667 0.00 0.00 34.89 2.57
2856 3062 5.008613 GCACCCGCTCAAGAAATAATTCATA 59.991 40.000 0.00 0.00 34.89 2.15
2857 3063 6.459573 GCACCCGCTCAAGAAATAATTCATAA 60.460 38.462 0.00 0.00 34.89 1.90
2858 3064 7.479980 CACCCGCTCAAGAAATAATTCATAAA 58.520 34.615 0.00 0.00 38.06 1.40
2859 3065 7.973388 CACCCGCTCAAGAAATAATTCATAAAA 59.027 33.333 0.00 0.00 38.06 1.52
2860 3066 8.527810 ACCCGCTCAAGAAATAATTCATAAAAA 58.472 29.630 0.00 0.00 38.06 1.94
2904 3110 6.849085 TTTGTGCATGGTAGATAATTTGGT 57.151 33.333 0.00 0.00 0.00 3.67
2905 3111 5.833406 TGTGCATGGTAGATAATTTGGTG 57.167 39.130 0.00 0.00 0.00 4.17
2906 3112 4.097741 TGTGCATGGTAGATAATTTGGTGC 59.902 41.667 0.00 0.00 0.00 5.01
2907 3113 3.314913 TGCATGGTAGATAATTTGGTGCG 59.685 43.478 0.00 0.00 33.07 5.34
2908 3114 3.853307 GCATGGTAGATAATTTGGTGCGC 60.853 47.826 0.00 0.00 0.00 6.09
2909 3115 3.275617 TGGTAGATAATTTGGTGCGCT 57.724 42.857 9.73 0.00 0.00 5.92
2910 3116 3.202906 TGGTAGATAATTTGGTGCGCTC 58.797 45.455 9.73 4.47 0.00 5.03
2911 3117 2.548480 GGTAGATAATTTGGTGCGCTCC 59.452 50.000 21.41 21.41 0.00 4.70
2912 3118 2.418368 AGATAATTTGGTGCGCTCCA 57.582 45.000 26.46 26.46 35.49 3.86
2913 3119 2.722094 AGATAATTTGGTGCGCTCCAA 58.278 42.857 33.71 33.71 44.48 3.53
2918 3124 3.883997 TTGGTGCGCTCCAAATTTC 57.116 47.368 34.82 7.04 43.40 2.17
2919 3125 1.035923 TTGGTGCGCTCCAAATTTCA 58.964 45.000 34.82 16.58 43.40 2.69
2920 3126 0.597568 TGGTGCGCTCCAAATTTCAG 59.402 50.000 27.84 0.00 34.24 3.02
2921 3127 0.881118 GGTGCGCTCCAAATTTCAGA 59.119 50.000 23.09 0.00 0.00 3.27
2922 3128 1.135575 GGTGCGCTCCAAATTTCAGAG 60.136 52.381 23.09 9.49 0.00 3.35
2935 3141 7.429636 CAAATTTCAGAGCATTTGGACATTT 57.570 32.000 8.42 0.00 36.93 2.32
2936 3142 7.295201 CAAATTTCAGAGCATTTGGACATTTG 58.705 34.615 8.42 0.00 36.93 2.32
2937 3143 5.787953 TTTCAGAGCATTTGGACATTTGA 57.212 34.783 0.00 0.00 0.00 2.69
2938 3144 5.381174 TTCAGAGCATTTGGACATTTGAG 57.619 39.130 0.00 0.00 0.00 3.02
2939 3145 4.401022 TCAGAGCATTTGGACATTTGAGT 58.599 39.130 0.00 0.00 0.00 3.41
2940 3146 5.559770 TCAGAGCATTTGGACATTTGAGTA 58.440 37.500 0.00 0.00 0.00 2.59
2941 3147 5.645067 TCAGAGCATTTGGACATTTGAGTAG 59.355 40.000 0.00 0.00 0.00 2.57
2942 3148 4.397417 AGAGCATTTGGACATTTGAGTAGC 59.603 41.667 0.00 0.00 0.00 3.58
2943 3149 4.338879 AGCATTTGGACATTTGAGTAGCT 58.661 39.130 0.00 0.00 0.00 3.32
2944 3150 4.397417 AGCATTTGGACATTTGAGTAGCTC 59.603 41.667 0.00 0.00 0.00 4.09
2945 3151 4.397417 GCATTTGGACATTTGAGTAGCTCT 59.603 41.667 0.00 0.00 0.00 4.09
2946 3152 5.448360 GCATTTGGACATTTGAGTAGCTCTC 60.448 44.000 0.00 0.00 43.03 3.20
2974 3180 5.930837 AAAAGACAAATTGGGTCAGAACA 57.069 34.783 11.72 0.00 37.74 3.18
2975 3181 5.520376 AAAGACAAATTGGGTCAGAACAG 57.480 39.130 11.72 0.00 37.74 3.16
2976 3182 4.170468 AGACAAATTGGGTCAGAACAGT 57.830 40.909 11.72 0.00 37.74 3.55
2977 3183 5.304686 AGACAAATTGGGTCAGAACAGTA 57.695 39.130 11.72 0.00 37.74 2.74
2978 3184 5.880901 AGACAAATTGGGTCAGAACAGTAT 58.119 37.500 11.72 0.00 37.74 2.12
2979 3185 7.016153 AGACAAATTGGGTCAGAACAGTATA 57.984 36.000 11.72 0.00 37.74 1.47
2980 3186 6.879458 AGACAAATTGGGTCAGAACAGTATAC 59.121 38.462 11.72 0.00 37.74 1.47
2981 3187 5.642063 ACAAATTGGGTCAGAACAGTATACG 59.358 40.000 0.00 0.00 0.00 3.06
2982 3188 5.670792 AATTGGGTCAGAACAGTATACGA 57.329 39.130 0.00 0.00 0.00 3.43
2983 3189 5.670792 ATTGGGTCAGAACAGTATACGAA 57.329 39.130 0.00 0.00 0.00 3.85
2984 3190 4.445452 TGGGTCAGAACAGTATACGAAC 57.555 45.455 0.00 0.00 0.00 3.95
2985 3191 3.827876 TGGGTCAGAACAGTATACGAACA 59.172 43.478 0.00 0.00 0.00 3.18
2986 3192 4.082408 TGGGTCAGAACAGTATACGAACAG 60.082 45.833 0.00 0.00 0.00 3.16
2987 3193 4.082354 GGGTCAGAACAGTATACGAACAGT 60.082 45.833 0.00 0.00 0.00 3.55
2988 3194 5.124457 GGGTCAGAACAGTATACGAACAGTA 59.876 44.000 0.00 0.00 40.03 2.74
2989 3195 6.026513 GGTCAGAACAGTATACGAACAGTAC 58.973 44.000 0.00 0.00 38.29 2.73
2990 3196 6.348786 GGTCAGAACAGTATACGAACAGTACA 60.349 42.308 0.00 0.00 38.29 2.90
2991 3197 7.249147 GTCAGAACAGTATACGAACAGTACAT 58.751 38.462 0.00 0.00 38.29 2.29
2992 3198 7.754027 GTCAGAACAGTATACGAACAGTACATT 59.246 37.037 0.00 0.00 38.29 2.71
2993 3199 8.949177 TCAGAACAGTATACGAACAGTACATTA 58.051 33.333 0.00 0.00 38.29 1.90
2994 3200 9.731819 CAGAACAGTATACGAACAGTACATTAT 57.268 33.333 0.00 0.00 38.29 1.28
3005 3211 9.095065 ACGAACAGTACATTATTTAACAGATCC 57.905 33.333 0.00 0.00 0.00 3.36
3006 3212 8.548721 CGAACAGTACATTATTTAACAGATCCC 58.451 37.037 0.00 0.00 0.00 3.85
3007 3213 9.391006 GAACAGTACATTATTTAACAGATCCCA 57.609 33.333 0.00 0.00 0.00 4.37
3008 3214 9.747898 AACAGTACATTATTTAACAGATCCCAA 57.252 29.630 0.00 0.00 0.00 4.12
3009 3215 9.747898 ACAGTACATTATTTAACAGATCCCAAA 57.252 29.630 0.00 0.00 0.00 3.28
3020 3226 9.898152 TTTAACAGATCCCAAATTTGTCTTTTT 57.102 25.926 16.73 10.36 0.00 1.94
3046 3252 4.727507 GAGAGCTACTCAGATGTCCAAA 57.272 45.455 7.93 0.00 44.36 3.28
3047 3253 5.275067 GAGAGCTACTCAGATGTCCAAAT 57.725 43.478 7.93 0.00 44.36 2.32
3048 3254 5.021033 AGAGCTACTCAGATGTCCAAATG 57.979 43.478 0.00 0.00 32.06 2.32
3049 3255 4.713814 AGAGCTACTCAGATGTCCAAATGA 59.286 41.667 0.00 0.00 32.06 2.57
3050 3256 5.366186 AGAGCTACTCAGATGTCCAAATGAT 59.634 40.000 0.00 0.00 32.06 2.45
3051 3257 5.999044 AGCTACTCAGATGTCCAAATGATT 58.001 37.500 0.00 0.00 0.00 2.57
3052 3258 6.421485 AGCTACTCAGATGTCCAAATGATTT 58.579 36.000 0.00 0.00 0.00 2.17
3053 3259 6.318144 AGCTACTCAGATGTCCAAATGATTTG 59.682 38.462 10.84 10.84 40.32 2.32
3054 3260 6.317140 GCTACTCAGATGTCCAAATGATTTGA 59.683 38.462 18.82 0.00 43.26 2.69
3055 3261 7.148188 GCTACTCAGATGTCCAAATGATTTGAA 60.148 37.037 18.82 0.00 43.26 2.69
3056 3262 7.528996 ACTCAGATGTCCAAATGATTTGAAA 57.471 32.000 18.82 4.37 43.26 2.69
3057 3263 8.130671 ACTCAGATGTCCAAATGATTTGAAAT 57.869 30.769 18.82 9.08 43.26 2.17
3058 3264 8.591072 ACTCAGATGTCCAAATGATTTGAAATT 58.409 29.630 18.82 1.83 43.26 1.82
3059 3265 9.431887 CTCAGATGTCCAAATGATTTGAAATTT 57.568 29.630 18.82 0.00 43.26 1.82
3060 3266 9.210329 TCAGATGTCCAAATGATTTGAAATTTG 57.790 29.630 18.82 13.07 43.26 2.32
3066 3272 6.168164 CAAATGATTTGAAATTTGGACCGG 57.832 37.500 12.37 0.00 43.26 5.28
3067 3273 5.736951 AATGATTTGAAATTTGGACCGGA 57.263 34.783 9.46 0.00 0.00 5.14
3068 3274 4.513198 TGATTTGAAATTTGGACCGGAC 57.487 40.909 9.46 0.00 0.00 4.79
3069 3275 3.891977 TGATTTGAAATTTGGACCGGACA 59.108 39.130 9.46 3.42 0.00 4.02
3070 3276 4.526262 TGATTTGAAATTTGGACCGGACAT 59.474 37.500 9.46 0.00 0.00 3.06
3071 3277 4.513198 TTTGAAATTTGGACCGGACATC 57.487 40.909 9.46 0.00 0.00 3.06
3072 3278 3.147553 TGAAATTTGGACCGGACATCA 57.852 42.857 9.46 4.66 0.00 3.07
3073 3279 2.817258 TGAAATTTGGACCGGACATCAC 59.183 45.455 9.46 0.00 0.00 3.06
3074 3280 1.448985 AATTTGGACCGGACATCACG 58.551 50.000 9.46 0.00 0.00 4.35
3075 3281 1.024579 ATTTGGACCGGACATCACGC 61.025 55.000 9.46 0.00 0.00 5.34
3076 3282 2.384653 TTTGGACCGGACATCACGCA 62.385 55.000 9.46 0.00 0.00 5.24
3077 3283 2.813908 GGACCGGACATCACGCAC 60.814 66.667 9.46 0.00 0.00 5.34
3078 3284 2.813908 GACCGGACATCACGCACC 60.814 66.667 9.46 0.00 0.00 5.01
3079 3285 3.583276 GACCGGACATCACGCACCA 62.583 63.158 9.46 0.00 0.00 4.17
3080 3286 2.358125 CCGGACATCACGCACCAA 60.358 61.111 0.00 0.00 0.00 3.67
3081 3287 1.963855 CCGGACATCACGCACCAAA 60.964 57.895 0.00 0.00 0.00 3.28
3082 3288 1.305219 CCGGACATCACGCACCAAAT 61.305 55.000 0.00 0.00 0.00 2.32
3083 3289 0.521291 CGGACATCACGCACCAAATT 59.479 50.000 0.00 0.00 0.00 1.82
3084 3290 1.735018 CGGACATCACGCACCAAATTA 59.265 47.619 0.00 0.00 0.00 1.40
3085 3291 2.354510 CGGACATCACGCACCAAATTAT 59.645 45.455 0.00 0.00 0.00 1.28
3086 3292 3.546020 CGGACATCACGCACCAAATTATC 60.546 47.826 0.00 0.00 0.00 1.75
3087 3293 3.627577 GGACATCACGCACCAAATTATCT 59.372 43.478 0.00 0.00 0.00 1.98
3088 3294 4.814234 GGACATCACGCACCAAATTATCTA 59.186 41.667 0.00 0.00 0.00 1.98
3089 3295 5.277345 GGACATCACGCACCAAATTATCTAC 60.277 44.000 0.00 0.00 0.00 2.59
3090 3296 4.574828 ACATCACGCACCAAATTATCTACC 59.425 41.667 0.00 0.00 0.00 3.18
3091 3297 3.191669 TCACGCACCAAATTATCTACCG 58.808 45.455 0.00 0.00 0.00 4.02
3092 3298 2.933906 CACGCACCAAATTATCTACCGT 59.066 45.455 0.00 0.00 0.00 4.83
3093 3299 2.933906 ACGCACCAAATTATCTACCGTG 59.066 45.455 0.00 0.00 0.00 4.94
3094 3300 2.286184 CGCACCAAATTATCTACCGTGC 60.286 50.000 0.00 0.00 41.23 5.34
3095 3301 2.032924 GCACCAAATTATCTACCGTGCC 59.967 50.000 0.00 0.00 39.30 5.01
3096 3302 3.275143 CACCAAATTATCTACCGTGCCA 58.725 45.455 0.00 0.00 0.00 4.92
3097 3303 3.692101 CACCAAATTATCTACCGTGCCAA 59.308 43.478 0.00 0.00 0.00 4.52
3098 3304 4.156922 CACCAAATTATCTACCGTGCCAAA 59.843 41.667 0.00 0.00 0.00 3.28
3099 3305 4.767928 ACCAAATTATCTACCGTGCCAAAA 59.232 37.500 0.00 0.00 0.00 2.44
3100 3306 5.244178 ACCAAATTATCTACCGTGCCAAAAA 59.756 36.000 0.00 0.00 0.00 1.94
3155 3361 8.939201 TTGTTTTGATTTTTCTATTCAGCACA 57.061 26.923 0.00 0.00 0.00 4.57
3156 3362 9.545105 TTGTTTTGATTTTTCTATTCAGCACAT 57.455 25.926 0.00 0.00 0.00 3.21
3157 3363 8.980610 TGTTTTGATTTTTCTATTCAGCACATG 58.019 29.630 0.00 0.00 0.00 3.21
3158 3364 8.981647 GTTTTGATTTTTCTATTCAGCACATGT 58.018 29.630 0.00 0.00 0.00 3.21
3159 3365 8.523523 TTTGATTTTTCTATTCAGCACATGTG 57.476 30.769 21.83 21.83 0.00 3.21
3170 3376 3.170360 CACATGTGCAGATGCTCCT 57.830 52.632 22.79 1.16 42.66 3.69
3171 3377 0.733150 CACATGTGCAGATGCTCCTG 59.267 55.000 22.79 10.38 42.66 3.86
3172 3378 0.327259 ACATGTGCAGATGCTCCTGT 59.673 50.000 22.79 10.64 42.66 4.00
3173 3379 0.733150 CATGTGCAGATGCTCCTGTG 59.267 55.000 11.30 0.00 42.66 3.66
3174 3380 0.616891 ATGTGCAGATGCTCCTGTGA 59.383 50.000 6.35 0.00 42.66 3.58
3175 3381 0.036671 TGTGCAGATGCTCCTGTGAG 60.037 55.000 6.35 0.00 42.66 3.51
3184 3390 1.576421 CTCCTGTGAGCCAAAACGC 59.424 57.895 0.00 0.00 0.00 4.84
3185 3391 1.856265 CTCCTGTGAGCCAAAACGCC 61.856 60.000 0.00 0.00 0.00 5.68
3186 3392 1.898574 CCTGTGAGCCAAAACGCCT 60.899 57.895 0.00 0.00 0.00 5.52
3187 3393 1.576421 CTGTGAGCCAAAACGCCTC 59.424 57.895 0.00 0.00 0.00 4.70
3188 3394 1.153066 TGTGAGCCAAAACGCCTCA 60.153 52.632 0.00 0.00 0.00 3.86
3189 3395 1.282875 GTGAGCCAAAACGCCTCAC 59.717 57.895 4.51 4.51 37.78 3.51
3190 3396 1.148273 TGAGCCAAAACGCCTCACT 59.852 52.632 0.00 0.00 0.00 3.41
3191 3397 0.884704 TGAGCCAAAACGCCTCACTC 60.885 55.000 0.00 0.00 0.00 3.51
3192 3398 1.578206 GAGCCAAAACGCCTCACTCC 61.578 60.000 0.00 0.00 0.00 3.85
3193 3399 2.626780 GCCAAAACGCCTCACTCCC 61.627 63.158 0.00 0.00 0.00 4.30
3194 3400 1.073199 CCAAAACGCCTCACTCCCT 59.927 57.895 0.00 0.00 0.00 4.20
3195 3401 0.537371 CCAAAACGCCTCACTCCCTT 60.537 55.000 0.00 0.00 0.00 3.95
3196 3402 0.593128 CAAAACGCCTCACTCCCTTG 59.407 55.000 0.00 0.00 0.00 3.61
3197 3403 0.182775 AAAACGCCTCACTCCCTTGT 59.817 50.000 0.00 0.00 0.00 3.16
3198 3404 0.535102 AAACGCCTCACTCCCTTGTG 60.535 55.000 0.00 0.00 39.15 3.33
3199 3405 1.696097 AACGCCTCACTCCCTTGTGT 61.696 55.000 0.00 0.00 38.90 3.72
3200 3406 1.374758 CGCCTCACTCCCTTGTGTC 60.375 63.158 0.00 0.00 38.90 3.67
3201 3407 1.821061 CGCCTCACTCCCTTGTGTCT 61.821 60.000 0.00 0.00 38.90 3.41
3202 3408 1.267121 GCCTCACTCCCTTGTGTCTA 58.733 55.000 0.00 0.00 38.90 2.59
3203 3409 1.834263 GCCTCACTCCCTTGTGTCTAT 59.166 52.381 0.00 0.00 38.90 1.98
3204 3410 3.031736 GCCTCACTCCCTTGTGTCTATA 58.968 50.000 0.00 0.00 38.90 1.31
3205 3411 3.451178 GCCTCACTCCCTTGTGTCTATAA 59.549 47.826 0.00 0.00 38.90 0.98
3206 3412 4.081087 GCCTCACTCCCTTGTGTCTATAAA 60.081 45.833 0.00 0.00 38.90 1.40
3207 3413 5.396884 GCCTCACTCCCTTGTGTCTATAAAT 60.397 44.000 0.00 0.00 38.90 1.40
3208 3414 6.653989 CCTCACTCCCTTGTGTCTATAAATT 58.346 40.000 0.00 0.00 38.90 1.82
3209 3415 7.112779 CCTCACTCCCTTGTGTCTATAAATTT 58.887 38.462 0.00 0.00 38.90 1.82
3210 3416 7.281100 CCTCACTCCCTTGTGTCTATAAATTTC 59.719 40.741 0.00 0.00 38.90 2.17
3211 3417 7.918076 TCACTCCCTTGTGTCTATAAATTTCT 58.082 34.615 0.00 0.00 38.90 2.52
3212 3418 7.824289 TCACTCCCTTGTGTCTATAAATTTCTG 59.176 37.037 0.00 0.00 38.90 3.02
3213 3419 7.607991 CACTCCCTTGTGTCTATAAATTTCTGT 59.392 37.037 0.00 0.00 33.61 3.41
3214 3420 7.607991 ACTCCCTTGTGTCTATAAATTTCTGTG 59.392 37.037 0.00 0.00 0.00 3.66
3215 3421 7.685481 TCCCTTGTGTCTATAAATTTCTGTGA 58.315 34.615 0.00 0.00 0.00 3.58
3216 3422 8.160765 TCCCTTGTGTCTATAAATTTCTGTGAA 58.839 33.333 0.00 0.00 0.00 3.18
3217 3423 8.792633 CCCTTGTGTCTATAAATTTCTGTGAAA 58.207 33.333 0.00 0.00 0.00 2.69
3218 3424 9.612620 CCTTGTGTCTATAAATTTCTGTGAAAC 57.387 33.333 0.00 0.00 37.35 2.78
3243 3449 9.820229 ACATATACAAATAAAAGTCACACAACG 57.180 29.630 0.00 0.00 0.00 4.10
3244 3450 8.785101 CATATACAAATAAAAGTCACACAACGC 58.215 33.333 0.00 0.00 0.00 4.84
3245 3451 5.243426 ACAAATAAAAGTCACACAACGCT 57.757 34.783 0.00 0.00 0.00 5.07
3246 3452 6.366315 ACAAATAAAAGTCACACAACGCTA 57.634 33.333 0.00 0.00 0.00 4.26
3247 3453 6.787225 ACAAATAAAAGTCACACAACGCTAA 58.213 32.000 0.00 0.00 0.00 3.09
3248 3454 6.689669 ACAAATAAAAGTCACACAACGCTAAC 59.310 34.615 0.00 0.00 0.00 2.34
3249 3455 5.994887 ATAAAAGTCACACAACGCTAACA 57.005 34.783 0.00 0.00 0.00 2.41
3250 3456 3.668596 AAAGTCACACAACGCTAACAC 57.331 42.857 0.00 0.00 0.00 3.32
3251 3457 2.596904 AGTCACACAACGCTAACACT 57.403 45.000 0.00 0.00 0.00 3.55
3252 3458 3.720949 AGTCACACAACGCTAACACTA 57.279 42.857 0.00 0.00 0.00 2.74
3253 3459 4.049546 AGTCACACAACGCTAACACTAA 57.950 40.909 0.00 0.00 0.00 2.24
3254 3460 3.800506 AGTCACACAACGCTAACACTAAC 59.199 43.478 0.00 0.00 0.00 2.34
3255 3461 3.800506 GTCACACAACGCTAACACTAACT 59.199 43.478 0.00 0.00 0.00 2.24
3256 3462 4.046462 TCACACAACGCTAACACTAACTC 58.954 43.478 0.00 0.00 0.00 3.01
3257 3463 3.183775 CACACAACGCTAACACTAACTCC 59.816 47.826 0.00 0.00 0.00 3.85
3258 3464 3.181473 ACACAACGCTAACACTAACTCCA 60.181 43.478 0.00 0.00 0.00 3.86
3259 3465 3.428870 CACAACGCTAACACTAACTCCAG 59.571 47.826 0.00 0.00 0.00 3.86
3260 3466 2.365408 ACGCTAACACTAACTCCAGC 57.635 50.000 0.00 0.00 0.00 4.85
3261 3467 1.893801 ACGCTAACACTAACTCCAGCT 59.106 47.619 0.00 0.00 0.00 4.24
3262 3468 2.299297 ACGCTAACACTAACTCCAGCTT 59.701 45.455 0.00 0.00 0.00 3.74
3263 3469 3.508793 ACGCTAACACTAACTCCAGCTTA 59.491 43.478 0.00 0.00 0.00 3.09
3264 3470 4.159879 ACGCTAACACTAACTCCAGCTTAT 59.840 41.667 0.00 0.00 0.00 1.73
3265 3471 4.504461 CGCTAACACTAACTCCAGCTTATG 59.496 45.833 0.00 0.00 0.00 1.90
3266 3472 5.661458 GCTAACACTAACTCCAGCTTATGA 58.339 41.667 0.00 0.00 0.00 2.15
3267 3473 5.751028 GCTAACACTAACTCCAGCTTATGAG 59.249 44.000 3.67 3.67 34.73 2.90
3268 3474 4.744795 ACACTAACTCCAGCTTATGAGG 57.255 45.455 8.96 0.00 32.80 3.86
3269 3475 4.097418 ACACTAACTCCAGCTTATGAGGT 58.903 43.478 8.96 5.32 32.80 3.85
3270 3476 5.269991 ACACTAACTCCAGCTTATGAGGTA 58.730 41.667 8.96 6.09 32.80 3.08
3271 3477 5.900123 ACACTAACTCCAGCTTATGAGGTAT 59.100 40.000 8.96 0.00 30.77 2.73
3272 3478 6.183360 ACACTAACTCCAGCTTATGAGGTATG 60.183 42.308 8.96 8.84 30.77 2.39
3273 3479 3.760580 ACTCCAGCTTATGAGGTATGC 57.239 47.619 8.96 0.00 34.55 3.14
3274 3480 2.370189 ACTCCAGCTTATGAGGTATGCC 59.630 50.000 8.96 0.00 34.81 4.40
3275 3481 1.699634 TCCAGCTTATGAGGTATGCCC 59.300 52.381 0.00 0.00 34.81 5.36
3276 3482 1.271597 CCAGCTTATGAGGTATGCCCC 60.272 57.143 0.00 0.00 34.81 5.80
3277 3483 1.068121 AGCTTATGAGGTATGCCCCC 58.932 55.000 0.00 0.00 34.81 5.40
3318 3524 3.465403 CTCCCAGGGGCGACTCAG 61.465 72.222 5.33 0.00 34.68 3.35
3321 3527 3.465403 CCAGGGGCGACTCAGGAG 61.465 72.222 0.00 0.00 0.00 3.69
3322 3528 3.465403 CAGGGGCGACTCAGGAGG 61.465 72.222 0.00 0.00 0.00 4.30
3329 3535 4.600207 GACTCAGGAGGCGAAACC 57.400 61.111 0.83 0.00 39.61 3.27
3330 3536 1.079057 GACTCAGGAGGCGAAACCC 60.079 63.158 0.83 0.00 40.58 4.11
3331 3537 1.536662 ACTCAGGAGGCGAAACCCT 60.537 57.895 0.83 0.00 40.58 4.34
3332 3538 0.252103 ACTCAGGAGGCGAAACCCTA 60.252 55.000 0.83 0.00 40.58 3.53
3333 3539 0.461961 CTCAGGAGGCGAAACCCTAG 59.538 60.000 0.00 0.00 40.58 3.02
3334 3540 1.153349 CAGGAGGCGAAACCCTAGC 60.153 63.158 0.00 0.00 40.58 3.42
3357 3563 3.093172 CCCAGGCTCCCCTCCTTC 61.093 72.222 0.00 0.00 40.33 3.46
3358 3564 3.093172 CCAGGCTCCCCTCCTTCC 61.093 72.222 0.00 0.00 40.33 3.46
3359 3565 3.093172 CAGGCTCCCCTCCTTCCC 61.093 72.222 0.00 0.00 40.33 3.97
3360 3566 4.439901 AGGCTCCCCTCCTTCCCC 62.440 72.222 0.00 0.00 36.46 4.81
3361 3567 4.439901 GGCTCCCCTCCTTCCCCT 62.440 72.222 0.00 0.00 0.00 4.79
3362 3568 2.770475 GCTCCCCTCCTTCCCCTC 60.770 72.222 0.00 0.00 0.00 4.30
3363 3569 2.040359 CTCCCCTCCTTCCCCTCC 60.040 72.222 0.00 0.00 0.00 4.30
3364 3570 3.707189 TCCCCTCCTTCCCCTCCC 61.707 72.222 0.00 0.00 0.00 4.30
3365 3571 3.711782 CCCCTCCTTCCCCTCCCT 61.712 72.222 0.00 0.00 0.00 4.20
3366 3572 2.040359 CCCTCCTTCCCCTCCCTC 60.040 72.222 0.00 0.00 0.00 4.30
3367 3573 2.040359 CCTCCTTCCCCTCCCTCC 60.040 72.222 0.00 0.00 0.00 4.30
3368 3574 2.040359 CTCCTTCCCCTCCCTCCC 60.040 72.222 0.00 0.00 0.00 4.30
3369 3575 3.707189 TCCTTCCCCTCCCTCCCC 61.707 72.222 0.00 0.00 0.00 4.81
3370 3576 3.711782 CCTTCCCCTCCCTCCCCT 61.712 72.222 0.00 0.00 0.00 4.79
3371 3577 2.461637 CTTCCCCTCCCTCCCCTT 59.538 66.667 0.00 0.00 0.00 3.95
3372 3578 2.003548 CTTCCCCTCCCTCCCCTTG 61.004 68.421 0.00 0.00 0.00 3.61
3373 3579 4.760220 TCCCCTCCCTCCCCTTGC 62.760 72.222 0.00 0.00 0.00 4.01
3377 3583 3.787001 CTCCCTCCCCTTGCCGTC 61.787 72.222 0.00 0.00 0.00 4.79
3412 3618 4.660938 GGCAAAGCCCTCACCGGT 62.661 66.667 0.00 0.00 44.06 5.28
3413 3619 3.365265 GCAAAGCCCTCACCGGTG 61.365 66.667 29.26 29.26 0.00 4.94
3414 3620 2.672996 CAAAGCCCTCACCGGTGG 60.673 66.667 33.40 22.94 0.00 4.61
3415 3621 2.852075 AAAGCCCTCACCGGTGGA 60.852 61.111 33.40 18.99 0.00 4.02
3416 3622 3.192103 AAAGCCCTCACCGGTGGAC 62.192 63.158 33.40 19.66 0.00 4.02
3442 3648 4.096003 CGGGGCCCTCGTTCATGT 62.096 66.667 24.38 0.00 0.00 3.21
3443 3649 2.438434 GGGGCCCTCGTTCATGTG 60.438 66.667 24.38 0.00 0.00 3.21
3444 3650 3.134127 GGGCCCTCGTTCATGTGC 61.134 66.667 17.04 0.00 0.00 4.57
3445 3651 2.045926 GGCCCTCGTTCATGTGCT 60.046 61.111 0.00 0.00 0.00 4.40
3446 3652 2.109126 GGCCCTCGTTCATGTGCTC 61.109 63.158 0.00 0.00 0.00 4.26
3447 3653 2.456119 GCCCTCGTTCATGTGCTCG 61.456 63.158 0.00 0.00 0.00 5.03
3448 3654 2.456119 CCCTCGTTCATGTGCTCGC 61.456 63.158 0.00 0.00 0.00 5.03
3449 3655 2.691522 CTCGTTCATGTGCTCGCG 59.308 61.111 0.00 0.00 0.00 5.87
3450 3656 3.411703 CTCGTTCATGTGCTCGCGC 62.412 63.158 0.00 0.00 0.00 6.86
3451 3657 4.833561 CGTTCATGTGCTCGCGCG 62.834 66.667 26.76 26.76 39.65 6.86
3469 3675 4.034258 CTGCTGTTGGGCGTGCTG 62.034 66.667 0.00 0.00 34.52 4.41
3472 3678 3.052082 CTGTTGGGCGTGCTGGAG 61.052 66.667 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
76 82 8.650490 TCCTCATTCATGCTTATATGTTCTACA 58.350 33.333 0.00 0.00 0.00 2.74
140 146 0.704664 TACTCCTCCTGGCTCAGTGA 59.295 55.000 0.00 0.00 0.00 3.41
316 323 2.280186 GGCCGATCGGTAGCTTGG 60.280 66.667 33.33 7.68 37.65 3.61
383 390 2.765250 CTACCTCGTGCAACAGCGGT 62.765 60.000 0.00 0.00 35.74 5.68
458 472 5.558818 GCTCAGACCCTTGATCAATATCAT 58.441 41.667 8.96 0.00 41.73 2.45
459 473 4.502087 CGCTCAGACCCTTGATCAATATCA 60.502 45.833 8.96 0.00 40.43 2.15
921 946 8.837788 GGTTTTCCTCTTTTTGATTGATTGAT 57.162 30.769 0.00 0.00 36.94 2.57
940 968 0.712222 CGACGCGAGGTTAGGTTTTC 59.288 55.000 15.93 0.00 0.00 2.29
975 1003 1.822114 TTCCAGGCGTGGTTGATCGA 61.822 55.000 24.03 0.80 45.28 3.59
985 1013 0.909610 TCCATCTCCTTTCCAGGCGT 60.910 55.000 0.00 0.00 40.58 5.68
990 1018 3.044156 CTCCATCTCCATCTCCTTTCCA 58.956 50.000 0.00 0.00 0.00 3.53
993 1021 3.577848 CGATCTCCATCTCCATCTCCTTT 59.422 47.826 0.00 0.00 0.00 3.11
1115 1143 1.003233 GTCCCAGAACGGAACCAATCT 59.997 52.381 0.00 0.00 36.56 2.40
1192 1394 1.341531 CTTCCAGTTCTCACGGTCTGT 59.658 52.381 0.00 0.00 0.00 3.41
1234 1436 2.202878 CATGTCGACCGGCCGAAT 60.203 61.111 30.73 15.31 40.51 3.34
1407 1609 3.545124 ATTTGACCAGGCGGCGACA 62.545 57.895 18.30 0.00 34.57 4.35
1542 1744 3.456365 GAGGAGAGGAGCTGCGCA 61.456 66.667 10.98 10.98 40.35 6.09
1704 1906 1.218316 GTACTCCTTCCGCCACCAG 59.782 63.158 0.00 0.00 0.00 4.00
1861 2063 3.119101 CGATCAAGCCACCTACTACAGTT 60.119 47.826 0.00 0.00 0.00 3.16
1864 2066 1.136305 GCGATCAAGCCACCTACTACA 59.864 52.381 0.00 0.00 0.00 2.74
1865 2067 1.136305 TGCGATCAAGCCACCTACTAC 59.864 52.381 0.00 0.00 36.02 2.73
1866 2068 1.409064 CTGCGATCAAGCCACCTACTA 59.591 52.381 0.00 0.00 36.02 1.82
1867 2069 0.176680 CTGCGATCAAGCCACCTACT 59.823 55.000 0.00 0.00 36.02 2.57
2032 2234 4.681978 GGCGACTGTCCAAGCCGT 62.682 66.667 9.01 0.00 40.17 5.68
2255 2457 0.895530 TTCCTCCTCTACAAGCGGTG 59.104 55.000 0.00 0.00 0.00 4.94
2263 2465 7.142680 CGTTTATTCATCTCTTCCTCCTCTAC 58.857 42.308 0.00 0.00 0.00 2.59
2279 2481 4.699637 ACGCATATCTTCCCGTTTATTCA 58.300 39.130 0.00 0.00 0.00 2.57
2345 2547 0.681243 ATGAGCCGCCTCCCTTTTTC 60.681 55.000 0.00 0.00 37.29 2.29
2389 2591 3.657727 TCATTCTTCCCCTGTTCTTTCCT 59.342 43.478 0.00 0.00 0.00 3.36
2578 2780 1.537202 GATATGGCGCATGGGAGAAAC 59.463 52.381 14.90 0.00 0.00 2.78
2631 2837 2.102084 TCCAAGCTCCGATCTGATTCAG 59.898 50.000 7.38 7.38 0.00 3.02
2638 2844 1.340399 TGCCATCCAAGCTCCGATCT 61.340 55.000 0.00 0.00 0.00 2.75
2716 2922 6.952935 AACTTGTGTGATTCTACGATTCTC 57.047 37.500 0.00 0.00 0.00 2.87
2739 2945 9.745880 GATTCTATGACTTTACGATCCAAACTA 57.254 33.333 0.00 0.00 0.00 2.24
2780 2986 4.062293 CGGACACAAGGTTGTTAGAATCA 58.938 43.478 0.00 0.00 39.91 2.57
2801 3007 3.498397 CCGGGTTCAGAATTGGATATTCG 59.502 47.826 0.00 0.00 33.51 3.34
2802 3008 3.821033 CCCGGGTTCAGAATTGGATATTC 59.179 47.826 14.18 0.00 0.00 1.75
2803 3009 3.832527 CCCGGGTTCAGAATTGGATATT 58.167 45.455 14.18 0.00 0.00 1.28
2804 3010 2.489073 GCCCGGGTTCAGAATTGGATAT 60.489 50.000 24.63 0.00 0.00 1.63
2805 3011 1.133915 GCCCGGGTTCAGAATTGGATA 60.134 52.381 24.63 0.00 0.00 2.59
2806 3012 0.395724 GCCCGGGTTCAGAATTGGAT 60.396 55.000 24.63 0.00 0.00 3.41
2807 3013 1.001393 GCCCGGGTTCAGAATTGGA 60.001 57.895 24.63 0.00 0.00 3.53
2808 3014 1.000896 AGCCCGGGTTCAGAATTGG 60.001 57.895 24.63 0.00 0.00 3.16
2809 3015 0.322456 TGAGCCCGGGTTCAGAATTG 60.322 55.000 33.78 0.00 31.87 2.32
2810 3016 0.625849 ATGAGCCCGGGTTCAGAATT 59.374 50.000 38.14 23.19 38.65 2.17
2811 3017 0.181350 GATGAGCCCGGGTTCAGAAT 59.819 55.000 38.14 25.82 38.65 2.40
2812 3018 0.909610 AGATGAGCCCGGGTTCAGAA 60.910 55.000 38.14 20.62 38.65 3.02
2813 3019 1.306141 AGATGAGCCCGGGTTCAGA 60.306 57.895 38.14 21.33 38.65 3.27
2814 3020 1.153289 CAGATGAGCCCGGGTTCAG 60.153 63.158 38.14 24.61 38.65 3.02
2815 3021 2.989639 CAGATGAGCCCGGGTTCA 59.010 61.111 37.98 37.98 39.52 3.18
2816 3022 2.514824 GCAGATGAGCCCGGGTTC 60.515 66.667 29.11 29.11 0.00 3.62
2817 3023 3.329889 TGCAGATGAGCCCGGGTT 61.330 61.111 24.63 18.47 0.00 4.11
2818 3024 4.101448 GTGCAGATGAGCCCGGGT 62.101 66.667 24.63 9.10 0.00 5.28
2819 3025 4.864334 GGTGCAGATGAGCCCGGG 62.864 72.222 19.09 19.09 0.00 5.73
2820 3026 4.864334 GGGTGCAGATGAGCCCGG 62.864 72.222 0.00 0.00 0.00 5.73
2823 3029 4.479993 AGCGGGTGCAGATGAGCC 62.480 66.667 0.00 0.00 46.23 4.70
2824 3030 2.894387 GAGCGGGTGCAGATGAGC 60.894 66.667 0.00 0.00 46.23 4.26
2825 3031 1.078918 TTGAGCGGGTGCAGATGAG 60.079 57.895 0.00 0.00 46.23 2.90
2826 3032 1.078918 CTTGAGCGGGTGCAGATGA 60.079 57.895 0.00 0.00 46.23 2.92
2827 3033 0.674581 TTCTTGAGCGGGTGCAGATG 60.675 55.000 0.00 0.00 46.23 2.90
2828 3034 0.036732 TTTCTTGAGCGGGTGCAGAT 59.963 50.000 0.00 0.00 46.23 2.90
2829 3035 0.036732 ATTTCTTGAGCGGGTGCAGA 59.963 50.000 0.00 0.00 46.23 4.26
2830 3036 1.737838 TATTTCTTGAGCGGGTGCAG 58.262 50.000 0.00 0.00 46.23 4.41
2831 3037 2.192664 TTATTTCTTGAGCGGGTGCA 57.807 45.000 0.00 0.00 46.23 4.57
2832 3038 3.128589 TGAATTATTTCTTGAGCGGGTGC 59.871 43.478 0.00 0.00 35.49 5.01
2833 3039 4.963276 TGAATTATTTCTTGAGCGGGTG 57.037 40.909 0.00 0.00 32.78 4.61
2834 3040 7.639113 TTTATGAATTATTTCTTGAGCGGGT 57.361 32.000 0.00 0.00 32.78 5.28
2835 3041 8.925161 TTTTTATGAATTATTTCTTGAGCGGG 57.075 30.769 0.00 0.00 32.78 6.13
2879 3085 7.601886 CACCAAATTATCTACCATGCACAAAAA 59.398 33.333 0.00 0.00 0.00 1.94
2880 3086 7.095910 CACCAAATTATCTACCATGCACAAAA 58.904 34.615 0.00 0.00 0.00 2.44
2881 3087 6.629128 CACCAAATTATCTACCATGCACAAA 58.371 36.000 0.00 0.00 0.00 2.83
2882 3088 5.394005 GCACCAAATTATCTACCATGCACAA 60.394 40.000 0.00 0.00 0.00 3.33
2883 3089 4.097741 GCACCAAATTATCTACCATGCACA 59.902 41.667 0.00 0.00 0.00 4.57
2884 3090 4.610945 GCACCAAATTATCTACCATGCAC 58.389 43.478 0.00 0.00 0.00 4.57
2885 3091 3.314913 CGCACCAAATTATCTACCATGCA 59.685 43.478 0.00 0.00 0.00 3.96
2886 3092 3.853307 GCGCACCAAATTATCTACCATGC 60.853 47.826 0.30 0.00 0.00 4.06
2887 3093 3.565482 AGCGCACCAAATTATCTACCATG 59.435 43.478 11.47 0.00 0.00 3.66
2888 3094 3.815401 GAGCGCACCAAATTATCTACCAT 59.185 43.478 11.47 0.00 0.00 3.55
2889 3095 3.202906 GAGCGCACCAAATTATCTACCA 58.797 45.455 11.47 0.00 0.00 3.25
2890 3096 2.548480 GGAGCGCACCAAATTATCTACC 59.452 50.000 19.70 0.00 0.00 3.18
2891 3097 3.202906 TGGAGCGCACCAAATTATCTAC 58.797 45.455 24.92 0.00 36.96 2.59
2892 3098 3.552132 TGGAGCGCACCAAATTATCTA 57.448 42.857 24.92 0.00 36.96 1.98
2893 3099 2.418368 TGGAGCGCACCAAATTATCT 57.582 45.000 24.92 0.00 36.96 1.98
2900 3106 1.000385 CTGAAATTTGGAGCGCACCAA 60.000 47.619 31.70 31.70 46.44 3.67
2901 3107 0.597568 CTGAAATTTGGAGCGCACCA 59.402 50.000 23.37 23.37 38.24 4.17
2902 3108 0.881118 TCTGAAATTTGGAGCGCACC 59.119 50.000 17.78 17.78 0.00 5.01
2903 3109 1.730446 GCTCTGAAATTTGGAGCGCAC 60.730 52.381 19.96 1.97 42.03 5.34
2904 3110 0.523072 GCTCTGAAATTTGGAGCGCA 59.477 50.000 19.96 2.00 42.03 6.09
2905 3111 3.319245 GCTCTGAAATTTGGAGCGC 57.681 52.632 19.96 0.00 42.03 5.92
2911 3117 7.171848 TCAAATGTCCAAATGCTCTGAAATTTG 59.828 33.333 14.21 14.21 41.41 2.32
2912 3118 7.218614 TCAAATGTCCAAATGCTCTGAAATTT 58.781 30.769 0.00 0.00 0.00 1.82
2913 3119 6.761312 TCAAATGTCCAAATGCTCTGAAATT 58.239 32.000 0.00 0.00 0.00 1.82
2914 3120 6.014840 ACTCAAATGTCCAAATGCTCTGAAAT 60.015 34.615 0.00 0.00 0.00 2.17
2915 3121 5.302568 ACTCAAATGTCCAAATGCTCTGAAA 59.697 36.000 0.00 0.00 0.00 2.69
2916 3122 4.828939 ACTCAAATGTCCAAATGCTCTGAA 59.171 37.500 0.00 0.00 0.00 3.02
2917 3123 4.401022 ACTCAAATGTCCAAATGCTCTGA 58.599 39.130 0.00 0.00 0.00 3.27
2918 3124 4.778534 ACTCAAATGTCCAAATGCTCTG 57.221 40.909 0.00 0.00 0.00 3.35
2919 3125 4.397417 GCTACTCAAATGTCCAAATGCTCT 59.603 41.667 0.00 0.00 0.00 4.09
2920 3126 4.397417 AGCTACTCAAATGTCCAAATGCTC 59.603 41.667 0.00 0.00 0.00 4.26
2921 3127 4.338879 AGCTACTCAAATGTCCAAATGCT 58.661 39.130 0.00 0.00 0.00 3.79
2922 3128 4.397417 AGAGCTACTCAAATGTCCAAATGC 59.603 41.667 0.00 0.00 32.06 3.56
2923 3129 6.116680 GAGAGCTACTCAAATGTCCAAATG 57.883 41.667 7.93 0.00 44.36 2.32
2951 3157 6.070824 ACTGTTCTGACCCAATTTGTCTTTTT 60.071 34.615 6.47 0.00 33.83 1.94
2952 3158 5.422012 ACTGTTCTGACCCAATTTGTCTTTT 59.578 36.000 6.47 0.00 33.83 2.27
2953 3159 4.956075 ACTGTTCTGACCCAATTTGTCTTT 59.044 37.500 6.47 0.00 33.83 2.52
2954 3160 4.536765 ACTGTTCTGACCCAATTTGTCTT 58.463 39.130 6.47 0.00 33.83 3.01
2955 3161 4.170468 ACTGTTCTGACCCAATTTGTCT 57.830 40.909 6.47 0.00 33.83 3.41
2956 3162 6.183360 CGTATACTGTTCTGACCCAATTTGTC 60.183 42.308 0.56 0.00 0.00 3.18
2957 3163 5.642063 CGTATACTGTTCTGACCCAATTTGT 59.358 40.000 0.56 0.00 0.00 2.83
2958 3164 5.872617 TCGTATACTGTTCTGACCCAATTTG 59.127 40.000 0.56 0.00 0.00 2.32
2959 3165 6.045072 TCGTATACTGTTCTGACCCAATTT 57.955 37.500 0.56 0.00 0.00 1.82
2960 3166 5.670792 TCGTATACTGTTCTGACCCAATT 57.329 39.130 0.56 0.00 0.00 2.32
2961 3167 5.046878 TGTTCGTATACTGTTCTGACCCAAT 60.047 40.000 0.56 0.00 0.00 3.16
2962 3168 4.281435 TGTTCGTATACTGTTCTGACCCAA 59.719 41.667 0.56 0.00 0.00 4.12
2963 3169 3.827876 TGTTCGTATACTGTTCTGACCCA 59.172 43.478 0.56 0.00 0.00 4.51
2964 3170 4.082354 ACTGTTCGTATACTGTTCTGACCC 60.082 45.833 0.56 0.00 0.00 4.46
2965 3171 5.056894 ACTGTTCGTATACTGTTCTGACC 57.943 43.478 0.56 0.00 0.00 4.02
2966 3172 6.605849 TGTACTGTTCGTATACTGTTCTGAC 58.394 40.000 0.56 0.00 33.15 3.51
2967 3173 6.806388 TGTACTGTTCGTATACTGTTCTGA 57.194 37.500 0.56 0.00 33.15 3.27
2968 3174 9.731819 ATAATGTACTGTTCGTATACTGTTCTG 57.268 33.333 0.56 0.00 33.15 3.02
2979 3185 9.095065 GGATCTGTTAAATAATGTACTGTTCGT 57.905 33.333 0.00 0.00 0.00 3.85
2980 3186 8.548721 GGGATCTGTTAAATAATGTACTGTTCG 58.451 37.037 0.00 0.00 0.00 3.95
2981 3187 9.391006 TGGGATCTGTTAAATAATGTACTGTTC 57.609 33.333 0.00 0.00 0.00 3.18
2982 3188 9.747898 TTGGGATCTGTTAAATAATGTACTGTT 57.252 29.630 0.00 0.00 0.00 3.16
2983 3189 9.747898 TTTGGGATCTGTTAAATAATGTACTGT 57.252 29.630 0.00 0.00 0.00 3.55
2994 3200 9.898152 AAAAAGACAAATTTGGGATCTGTTAAA 57.102 25.926 21.74 0.00 0.00 1.52
3025 3231 4.727507 TTTGGACATCTGAGTAGCTCTC 57.272 45.455 0.00 0.00 43.03 3.20
3026 3232 4.713814 TCATTTGGACATCTGAGTAGCTCT 59.286 41.667 0.00 0.00 0.00 4.09
3027 3233 5.016051 TCATTTGGACATCTGAGTAGCTC 57.984 43.478 0.00 0.00 0.00 4.09
3028 3234 5.627182 ATCATTTGGACATCTGAGTAGCT 57.373 39.130 0.00 0.00 0.00 3.32
3029 3235 6.317140 TCAAATCATTTGGACATCTGAGTAGC 59.683 38.462 10.30 0.00 40.98 3.58
3030 3236 7.854557 TCAAATCATTTGGACATCTGAGTAG 57.145 36.000 10.30 0.00 40.98 2.57
3031 3237 8.634335 TTTCAAATCATTTGGACATCTGAGTA 57.366 30.769 10.30 0.00 40.98 2.59
3032 3238 7.528996 TTTCAAATCATTTGGACATCTGAGT 57.471 32.000 10.30 0.00 40.98 3.41
3033 3239 8.997621 AATTTCAAATCATTTGGACATCTGAG 57.002 30.769 10.30 0.00 40.98 3.35
3034 3240 9.210329 CAAATTTCAAATCATTTGGACATCTGA 57.790 29.630 10.30 0.00 40.98 3.27
3043 3249 5.931146 TCCGGTCCAAATTTCAAATCATTTG 59.069 36.000 3.46 3.46 39.25 2.32
3044 3250 5.931724 GTCCGGTCCAAATTTCAAATCATTT 59.068 36.000 0.00 0.00 0.00 2.32
3045 3251 5.011533 TGTCCGGTCCAAATTTCAAATCATT 59.988 36.000 0.00 0.00 0.00 2.57
3046 3252 4.526262 TGTCCGGTCCAAATTTCAAATCAT 59.474 37.500 0.00 0.00 0.00 2.45
3047 3253 3.891977 TGTCCGGTCCAAATTTCAAATCA 59.108 39.130 0.00 0.00 0.00 2.57
3048 3254 4.513198 TGTCCGGTCCAAATTTCAAATC 57.487 40.909 0.00 0.00 0.00 2.17
3049 3255 4.526262 TGATGTCCGGTCCAAATTTCAAAT 59.474 37.500 0.00 0.00 0.00 2.32
3050 3256 3.891977 TGATGTCCGGTCCAAATTTCAAA 59.108 39.130 0.00 0.00 0.00 2.69
3051 3257 3.254657 GTGATGTCCGGTCCAAATTTCAA 59.745 43.478 0.00 0.00 0.00 2.69
3052 3258 2.817258 GTGATGTCCGGTCCAAATTTCA 59.183 45.455 0.00 0.00 0.00 2.69
3053 3259 2.159572 CGTGATGTCCGGTCCAAATTTC 60.160 50.000 0.00 0.00 0.00 2.17
3054 3260 1.810151 CGTGATGTCCGGTCCAAATTT 59.190 47.619 0.00 0.00 0.00 1.82
3055 3261 1.448985 CGTGATGTCCGGTCCAAATT 58.551 50.000 0.00 0.00 0.00 1.82
3056 3262 1.024579 GCGTGATGTCCGGTCCAAAT 61.025 55.000 0.00 0.00 0.00 2.32
3057 3263 1.669760 GCGTGATGTCCGGTCCAAA 60.670 57.895 0.00 0.00 0.00 3.28
3058 3264 2.047655 GCGTGATGTCCGGTCCAA 60.048 61.111 0.00 0.00 0.00 3.53
3059 3265 3.307108 TGCGTGATGTCCGGTCCA 61.307 61.111 0.00 0.00 0.00 4.02
3060 3266 2.813908 GTGCGTGATGTCCGGTCC 60.814 66.667 0.00 0.00 0.00 4.46
3061 3267 2.813908 GGTGCGTGATGTCCGGTC 60.814 66.667 0.00 0.00 0.00 4.79
3062 3268 2.668185 TTTGGTGCGTGATGTCCGGT 62.668 55.000 0.00 0.00 0.00 5.28
3063 3269 1.305219 ATTTGGTGCGTGATGTCCGG 61.305 55.000 0.00 0.00 0.00 5.14
3064 3270 0.521291 AATTTGGTGCGTGATGTCCG 59.479 50.000 0.00 0.00 0.00 4.79
3065 3271 3.627577 AGATAATTTGGTGCGTGATGTCC 59.372 43.478 0.00 0.00 0.00 4.02
3066 3272 4.882671 AGATAATTTGGTGCGTGATGTC 57.117 40.909 0.00 0.00 0.00 3.06
3067 3273 4.574828 GGTAGATAATTTGGTGCGTGATGT 59.425 41.667 0.00 0.00 0.00 3.06
3068 3274 4.318760 CGGTAGATAATTTGGTGCGTGATG 60.319 45.833 0.00 0.00 0.00 3.07
3069 3275 3.807622 CGGTAGATAATTTGGTGCGTGAT 59.192 43.478 0.00 0.00 0.00 3.06
3070 3276 3.191669 CGGTAGATAATTTGGTGCGTGA 58.808 45.455 0.00 0.00 0.00 4.35
3071 3277 2.933906 ACGGTAGATAATTTGGTGCGTG 59.066 45.455 0.00 0.00 0.00 5.34
3072 3278 2.933906 CACGGTAGATAATTTGGTGCGT 59.066 45.455 0.00 0.00 0.00 5.24
3073 3279 2.286184 GCACGGTAGATAATTTGGTGCG 60.286 50.000 0.00 0.00 39.68 5.34
3074 3280 2.032924 GGCACGGTAGATAATTTGGTGC 59.967 50.000 4.78 4.78 46.16 5.01
3075 3281 3.275143 TGGCACGGTAGATAATTTGGTG 58.725 45.455 0.00 0.00 0.00 4.17
3076 3282 3.637911 TGGCACGGTAGATAATTTGGT 57.362 42.857 0.00 0.00 0.00 3.67
3077 3283 4.974368 TTTGGCACGGTAGATAATTTGG 57.026 40.909 0.00 0.00 0.00 3.28
3129 3335 9.376075 TGTGCTGAATAGAAAAATCAAAACAAA 57.624 25.926 0.00 0.00 0.00 2.83
3130 3336 8.939201 TGTGCTGAATAGAAAAATCAAAACAA 57.061 26.923 0.00 0.00 0.00 2.83
3131 3337 8.980610 CATGTGCTGAATAGAAAAATCAAAACA 58.019 29.630 0.00 0.00 0.00 2.83
3132 3338 8.981647 ACATGTGCTGAATAGAAAAATCAAAAC 58.018 29.630 0.00 0.00 0.00 2.43
3133 3339 8.980610 CACATGTGCTGAATAGAAAAATCAAAA 58.019 29.630 13.94 0.00 0.00 2.44
3134 3340 8.523523 CACATGTGCTGAATAGAAAAATCAAA 57.476 30.769 13.94 0.00 0.00 2.69
3152 3358 0.733150 CAGGAGCATCTGCACATGTG 59.267 55.000 21.83 21.83 45.16 3.21
3153 3359 3.170360 CAGGAGCATCTGCACATGT 57.830 52.632 3.80 0.00 45.16 3.21
3154 3360 0.733150 CACAGGAGCATCTGCACATG 59.267 55.000 11.68 11.68 45.99 3.21
3155 3361 0.616891 TCACAGGAGCATCTGCACAT 59.383 50.000 4.79 0.00 45.16 3.21
3156 3362 0.036671 CTCACAGGAGCATCTGCACA 60.037 55.000 4.79 0.00 45.16 4.57
3157 3363 2.764944 CTCACAGGAGCATCTGCAC 58.235 57.895 4.79 0.00 45.16 4.57
3166 3372 1.576421 GCGTTTTGGCTCACAGGAG 59.424 57.895 0.00 0.00 44.33 3.69
3167 3373 1.896660 GGCGTTTTGGCTCACAGGA 60.897 57.895 0.00 0.00 40.72 3.86
3168 3374 2.644992 GGCGTTTTGGCTCACAGG 59.355 61.111 0.00 0.00 40.72 4.00
3175 3381 2.626780 GGGAGTGAGGCGTTTTGGC 61.627 63.158 0.00 0.00 45.27 4.52
3176 3382 0.537371 AAGGGAGTGAGGCGTTTTGG 60.537 55.000 0.00 0.00 0.00 3.28
3177 3383 0.593128 CAAGGGAGTGAGGCGTTTTG 59.407 55.000 0.00 0.00 0.00 2.44
3178 3384 0.182775 ACAAGGGAGTGAGGCGTTTT 59.817 50.000 0.00 0.00 0.00 2.43
3179 3385 0.535102 CACAAGGGAGTGAGGCGTTT 60.535 55.000 0.00 0.00 42.05 3.60
3180 3386 1.071471 CACAAGGGAGTGAGGCGTT 59.929 57.895 0.00 0.00 42.05 4.84
3181 3387 2.100879 GACACAAGGGAGTGAGGCGT 62.101 60.000 0.57 0.00 42.05 5.68
3182 3388 1.374758 GACACAAGGGAGTGAGGCG 60.375 63.158 0.57 0.00 42.05 5.52
3183 3389 1.267121 TAGACACAAGGGAGTGAGGC 58.733 55.000 0.57 0.00 42.05 4.70
3184 3390 5.677319 TTTATAGACACAAGGGAGTGAGG 57.323 43.478 0.57 0.00 42.05 3.86
3185 3391 8.043710 AGAAATTTATAGACACAAGGGAGTGAG 58.956 37.037 0.57 0.00 42.05 3.51
3186 3392 7.824289 CAGAAATTTATAGACACAAGGGAGTGA 59.176 37.037 0.57 0.00 42.05 3.41
3187 3393 7.607991 ACAGAAATTTATAGACACAAGGGAGTG 59.392 37.037 0.00 0.00 44.93 3.51
3188 3394 7.607991 CACAGAAATTTATAGACACAAGGGAGT 59.392 37.037 0.00 0.00 0.00 3.85
3189 3395 7.824289 TCACAGAAATTTATAGACACAAGGGAG 59.176 37.037 0.00 0.00 0.00 4.30
3190 3396 7.685481 TCACAGAAATTTATAGACACAAGGGA 58.315 34.615 0.00 0.00 0.00 4.20
3191 3397 7.921786 TCACAGAAATTTATAGACACAAGGG 57.078 36.000 0.00 0.00 0.00 3.95
3192 3398 9.612620 GTTTCACAGAAATTTATAGACACAAGG 57.387 33.333 0.00 0.00 0.00 3.61
3217 3423 9.820229 CGTTGTGTGACTTTTATTTGTATATGT 57.180 29.630 0.00 0.00 0.00 2.29
3218 3424 8.785101 GCGTTGTGTGACTTTTATTTGTATATG 58.215 33.333 0.00 0.00 0.00 1.78
3219 3425 8.726988 AGCGTTGTGTGACTTTTATTTGTATAT 58.273 29.630 0.00 0.00 0.00 0.86
3220 3426 8.090250 AGCGTTGTGTGACTTTTATTTGTATA 57.910 30.769 0.00 0.00 0.00 1.47
3221 3427 6.966021 AGCGTTGTGTGACTTTTATTTGTAT 58.034 32.000 0.00 0.00 0.00 2.29
3222 3428 6.366315 AGCGTTGTGTGACTTTTATTTGTA 57.634 33.333 0.00 0.00 0.00 2.41
3223 3429 5.243426 AGCGTTGTGTGACTTTTATTTGT 57.757 34.783 0.00 0.00 0.00 2.83
3224 3430 6.689241 TGTTAGCGTTGTGTGACTTTTATTTG 59.311 34.615 0.00 0.00 0.00 2.32
3225 3431 6.689669 GTGTTAGCGTTGTGTGACTTTTATTT 59.310 34.615 0.00 0.00 0.00 1.40
3226 3432 6.037830 AGTGTTAGCGTTGTGTGACTTTTATT 59.962 34.615 0.00 0.00 0.00 1.40
3227 3433 5.526111 AGTGTTAGCGTTGTGTGACTTTTAT 59.474 36.000 0.00 0.00 0.00 1.40
3228 3434 4.871557 AGTGTTAGCGTTGTGTGACTTTTA 59.128 37.500 0.00 0.00 0.00 1.52
3229 3435 3.687698 AGTGTTAGCGTTGTGTGACTTTT 59.312 39.130 0.00 0.00 0.00 2.27
3230 3436 3.267483 AGTGTTAGCGTTGTGTGACTTT 58.733 40.909 0.00 0.00 0.00 2.66
3231 3437 2.901249 AGTGTTAGCGTTGTGTGACTT 58.099 42.857 0.00 0.00 0.00 3.01
3232 3438 2.596904 AGTGTTAGCGTTGTGTGACT 57.403 45.000 0.00 0.00 0.00 3.41
3233 3439 3.800506 AGTTAGTGTTAGCGTTGTGTGAC 59.199 43.478 0.00 0.00 0.00 3.67
3234 3440 4.046462 GAGTTAGTGTTAGCGTTGTGTGA 58.954 43.478 0.00 0.00 0.00 3.58
3235 3441 3.183775 GGAGTTAGTGTTAGCGTTGTGTG 59.816 47.826 0.00 0.00 0.00 3.82
3236 3442 3.181473 TGGAGTTAGTGTTAGCGTTGTGT 60.181 43.478 0.00 0.00 0.00 3.72
3237 3443 3.386486 TGGAGTTAGTGTTAGCGTTGTG 58.614 45.455 0.00 0.00 0.00 3.33
3238 3444 3.650139 CTGGAGTTAGTGTTAGCGTTGT 58.350 45.455 0.00 0.00 0.00 3.32
3239 3445 2.412089 GCTGGAGTTAGTGTTAGCGTTG 59.588 50.000 0.00 0.00 0.00 4.10
3240 3446 2.299297 AGCTGGAGTTAGTGTTAGCGTT 59.701 45.455 0.00 0.00 36.36 4.84
3241 3447 1.893801 AGCTGGAGTTAGTGTTAGCGT 59.106 47.619 0.00 0.00 36.36 5.07
3242 3448 2.656560 AGCTGGAGTTAGTGTTAGCG 57.343 50.000 0.00 0.00 36.36 4.26
3243 3449 5.661458 TCATAAGCTGGAGTTAGTGTTAGC 58.339 41.667 0.00 0.00 0.00 3.09
3244 3450 6.127310 ACCTCATAAGCTGGAGTTAGTGTTAG 60.127 42.308 8.86 0.00 0.00 2.34
3245 3451 5.720041 ACCTCATAAGCTGGAGTTAGTGTTA 59.280 40.000 8.86 0.00 0.00 2.41
3246 3452 4.532521 ACCTCATAAGCTGGAGTTAGTGTT 59.467 41.667 8.86 0.00 0.00 3.32
3247 3453 4.097418 ACCTCATAAGCTGGAGTTAGTGT 58.903 43.478 8.86 0.00 0.00 3.55
3248 3454 4.744795 ACCTCATAAGCTGGAGTTAGTG 57.255 45.455 8.86 0.00 0.00 2.74
3249 3455 5.221541 GCATACCTCATAAGCTGGAGTTAGT 60.222 44.000 8.86 3.85 0.00 2.24
3250 3456 5.233988 GCATACCTCATAAGCTGGAGTTAG 58.766 45.833 8.86 0.00 0.00 2.34
3251 3457 4.040461 GGCATACCTCATAAGCTGGAGTTA 59.960 45.833 8.86 1.14 0.00 2.24
3252 3458 3.181450 GGCATACCTCATAAGCTGGAGTT 60.181 47.826 8.86 0.00 0.00 3.01
3253 3459 2.370189 GGCATACCTCATAAGCTGGAGT 59.630 50.000 8.86 2.00 0.00 3.85
3254 3460 2.289945 GGGCATACCTCATAAGCTGGAG 60.290 54.545 0.00 0.00 35.85 3.86
3255 3461 1.699634 GGGCATACCTCATAAGCTGGA 59.300 52.381 0.00 0.00 35.85 3.86
3256 3462 1.271597 GGGGCATACCTCATAAGCTGG 60.272 57.143 0.00 0.00 35.91 4.85
3257 3463 1.271597 GGGGGCATACCTCATAAGCTG 60.272 57.143 0.00 0.00 40.60 4.24
3258 3464 1.068121 GGGGGCATACCTCATAAGCT 58.932 55.000 0.00 0.00 40.60 3.74
3259 3465 3.652581 GGGGGCATACCTCATAAGC 57.347 57.895 0.00 0.00 40.60 3.09
3301 3507 3.465403 CTGAGTCGCCCCTGGGAG 61.465 72.222 16.20 8.14 37.50 4.30
3304 3510 3.465403 CTCCTGAGTCGCCCCTGG 61.465 72.222 0.00 0.00 0.00 4.45
3305 3511 3.465403 CCTCCTGAGTCGCCCCTG 61.465 72.222 0.00 0.00 0.00 4.45
3309 3515 3.296709 TTTCGCCTCCTGAGTCGCC 62.297 63.158 0.00 0.00 0.00 5.54
3310 3516 2.095252 GTTTCGCCTCCTGAGTCGC 61.095 63.158 0.00 0.00 0.00 5.19
3311 3517 1.446272 GGTTTCGCCTCCTGAGTCG 60.446 63.158 0.00 0.00 0.00 4.18
3312 3518 1.079057 GGGTTTCGCCTCCTGAGTC 60.079 63.158 0.00 0.00 37.43 3.36
3313 3519 0.252103 TAGGGTTTCGCCTCCTGAGT 60.252 55.000 0.00 0.00 37.43 3.41
3314 3520 0.461961 CTAGGGTTTCGCCTCCTGAG 59.538 60.000 0.00 0.00 37.43 3.35
3315 3521 1.614241 GCTAGGGTTTCGCCTCCTGA 61.614 60.000 0.00 0.00 37.43 3.86
3316 3522 1.153349 GCTAGGGTTTCGCCTCCTG 60.153 63.158 0.00 0.00 37.43 3.86
3317 3523 2.368011 GGCTAGGGTTTCGCCTCCT 61.368 63.158 0.00 0.00 40.62 3.69
3318 3524 2.189784 GGCTAGGGTTTCGCCTCC 59.810 66.667 0.00 0.00 40.62 4.30
3319 3525 2.202892 CGGCTAGGGTTTCGCCTC 60.203 66.667 0.00 0.00 41.61 4.70
3320 3526 4.468689 GCGGCTAGGGTTTCGCCT 62.469 66.667 0.00 0.00 41.61 5.52
3340 3546 3.093172 GAAGGAGGGGAGCCTGGG 61.093 72.222 0.00 0.00 35.50 4.45
3341 3547 3.093172 GGAAGGAGGGGAGCCTGG 61.093 72.222 0.00 0.00 35.50 4.45
3342 3548 3.093172 GGGAAGGAGGGGAGCCTG 61.093 72.222 0.00 0.00 35.50 4.85
3343 3549 4.439901 GGGGAAGGAGGGGAGCCT 62.440 72.222 0.00 0.00 37.35 4.58
3344 3550 4.439901 AGGGGAAGGAGGGGAGCC 62.440 72.222 0.00 0.00 0.00 4.70
3345 3551 2.770475 GAGGGGAAGGAGGGGAGC 60.770 72.222 0.00 0.00 0.00 4.70
3346 3552 2.040359 GGAGGGGAAGGAGGGGAG 60.040 72.222 0.00 0.00 0.00 4.30
3347 3553 3.707189 GGGAGGGGAAGGAGGGGA 61.707 72.222 0.00 0.00 0.00 4.81
3348 3554 3.711782 AGGGAGGGGAAGGAGGGG 61.712 72.222 0.00 0.00 0.00 4.79
3349 3555 2.040359 GAGGGAGGGGAAGGAGGG 60.040 72.222 0.00 0.00 0.00 4.30
3350 3556 2.040359 GGAGGGAGGGGAAGGAGG 60.040 72.222 0.00 0.00 0.00 4.30
3351 3557 2.040359 GGGAGGGAGGGGAAGGAG 60.040 72.222 0.00 0.00 0.00 3.69
3352 3558 3.707189 GGGGAGGGAGGGGAAGGA 61.707 72.222 0.00 0.00 0.00 3.36
3353 3559 3.289454 AAGGGGAGGGAGGGGAAGG 62.289 68.421 0.00 0.00 0.00 3.46
3354 3560 2.003548 CAAGGGGAGGGAGGGGAAG 61.004 68.421 0.00 0.00 0.00 3.46
3355 3561 2.127297 CAAGGGGAGGGAGGGGAA 59.873 66.667 0.00 0.00 0.00 3.97
3356 3562 4.760220 GCAAGGGGAGGGAGGGGA 62.760 72.222 0.00 0.00 0.00 4.81
3360 3566 3.787001 GACGGCAAGGGGAGGGAG 61.787 72.222 0.00 0.00 0.00 4.30
3396 3602 3.365265 CACCGGTGAGGGCTTTGC 61.365 66.667 31.31 0.00 46.96 3.68
3397 3603 2.672996 CCACCGGTGAGGGCTTTG 60.673 66.667 36.07 12.56 46.96 2.77
3398 3604 2.852075 TCCACCGGTGAGGGCTTT 60.852 61.111 36.07 0.00 46.96 3.51
3399 3605 3.637273 GTCCACCGGTGAGGGCTT 61.637 66.667 36.07 0.00 46.96 4.35
3425 3631 4.096003 ACATGAACGAGGGCCCCG 62.096 66.667 25.51 25.51 0.00 5.73
3426 3632 2.438434 CACATGAACGAGGGCCCC 60.438 66.667 21.43 9.47 0.00 5.80
3427 3633 3.134127 GCACATGAACGAGGGCCC 61.134 66.667 16.46 16.46 0.00 5.80
3428 3634 2.045926 AGCACATGAACGAGGGCC 60.046 61.111 0.00 0.00 0.00 5.80
3429 3635 2.456119 CGAGCACATGAACGAGGGC 61.456 63.158 0.00 0.00 0.00 5.19
3430 3636 2.456119 GCGAGCACATGAACGAGGG 61.456 63.158 0.00 0.00 0.00 4.30
3431 3637 2.792290 CGCGAGCACATGAACGAGG 61.792 63.158 0.00 0.00 0.00 4.63
3432 3638 2.691522 CGCGAGCACATGAACGAG 59.308 61.111 0.00 0.00 0.00 4.18
3452 3658 4.034258 CAGCACGCCCAACAGCAG 62.034 66.667 0.00 0.00 0.00 4.24
3455 3661 3.052082 CTCCAGCACGCCCAACAG 61.052 66.667 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.