Multiple sequence alignment - TraesCS2B01G361100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G361100 chr2B 100.000 4772 0 0 1 4772 514323492 514318721 0.000000e+00 8813.0
1 TraesCS2B01G361100 chr2B 87.394 825 81 9 895 1704 514343995 514343179 0.000000e+00 926.0
2 TraesCS2B01G361100 chr2B 81.622 370 58 8 3217 3581 514341524 514341160 1.000000e-76 298.0
3 TraesCS2B01G361100 chr2B 94.340 53 3 0 257 309 227303645 227303697 1.100000e-11 82.4
4 TraesCS2B01G361100 chr2B 91.228 57 5 0 3131 3187 764543842 764543898 1.420000e-10 78.7
5 TraesCS2B01G361100 chr2B 91.071 56 4 1 254 309 98261734 98261788 1.840000e-09 75.0
6 TraesCS2B01G361100 chr2A 92.237 1082 73 9 2014 3090 550886077 550887152 0.000000e+00 1522.0
7 TraesCS2B01G361100 chr2A 92.146 1044 49 11 882 1903 550884852 550885884 0.000000e+00 1443.0
8 TraesCS2B01G361100 chr2A 87.763 809 78 7 911 1704 550872941 550873743 0.000000e+00 926.0
9 TraesCS2B01G361100 chr2A 87.785 483 36 8 3745 4208 550887962 550888440 1.170000e-150 544.0
10 TraesCS2B01G361100 chr2A 91.837 343 28 0 3206 3548 550887205 550887547 3.340000e-131 479.0
11 TraesCS2B01G361100 chr2A 93.851 309 13 4 1 309 32762791 32763093 1.210000e-125 460.0
12 TraesCS2B01G361100 chr2A 85.479 365 37 6 4308 4670 550888461 550888811 2.710000e-97 366.0
13 TraesCS2B01G361100 chr2A 93.789 161 10 0 3574 3734 550887729 550887889 4.770000e-60 243.0
14 TraesCS2B01G361100 chr2A 91.346 104 8 1 726 828 550883558 550883661 1.790000e-29 141.0
15 TraesCS2B01G361100 chr2A 94.186 86 4 1 310 394 550883011 550883096 3.880000e-26 130.0
16 TraesCS2B01G361100 chr2A 94.444 36 1 1 3080 3115 75929286 75929252 2.000000e-03 54.7
17 TraesCS2B01G361100 chr2D 87.858 1326 85 29 464 1746 437874833 437873541 0.000000e+00 1487.0
18 TraesCS2B01G361100 chr2D 87.234 846 80 12 880 1704 437901585 437900747 0.000000e+00 939.0
19 TraesCS2B01G361100 chr2D 86.317 782 57 19 2351 3088 437872668 437871893 0.000000e+00 806.0
20 TraesCS2B01G361100 chr2D 93.017 401 28 0 3176 3576 437871891 437871491 1.910000e-163 586.0
21 TraesCS2B01G361100 chr2D 90.244 205 13 5 2021 2223 437873496 437873297 1.320000e-65 261.0
22 TraesCS2B01G361100 chr2D 85.965 171 16 3 3576 3738 437871442 437871272 4.910000e-40 176.0
23 TraesCS2B01G361100 chr2D 95.652 92 2 2 4220 4309 13622546 13622455 3.850000e-31 147.0
24 TraesCS2B01G361100 chr2D 96.512 86 2 1 309 394 437875036 437874952 1.790000e-29 141.0
25 TraesCS2B01G361100 chr6B 81.978 627 109 4 1076 1700 422655549 422654925 3.270000e-146 529.0
26 TraesCS2B01G361100 chr6B 86.957 92 8 3 3088 3178 44827187 44827275 3.040000e-17 100.0
27 TraesCS2B01G361100 chr6B 79.208 101 11 9 3088 3179 718319212 718319113 1.430000e-05 62.1
28 TraesCS2B01G361100 chr6A 81.021 627 115 4 1076 1700 387279609 387280233 3.320000e-136 496.0
29 TraesCS2B01G361100 chr6A 90.244 41 2 2 279 317 508352959 508352919 9.000000e-03 52.8
30 TraesCS2B01G361100 chr1A 93.226 310 15 4 1 310 7295327 7295024 7.280000e-123 451.0
31 TraesCS2B01G361100 chr1A 91.489 94 7 1 4217 4309 511621795 511621888 1.390000e-25 128.0
32 TraesCS2B01G361100 chr1A 83.000 100 13 3 3078 3176 557750673 557750769 2.370000e-13 87.9
33 TraesCS2B01G361100 chr1A 100.000 32 0 0 279 310 254992936 254992967 5.160000e-05 60.2
34 TraesCS2B01G361100 chr5B 88.889 306 31 2 1 305 641397159 641397462 1.620000e-99 374.0
35 TraesCS2B01G361100 chr5B 94.565 92 4 1 4220 4310 208925847 208925756 1.790000e-29 141.0
36 TraesCS2B01G361100 chr5B 85.870 92 11 1 3085 3176 139339075 139339164 3.930000e-16 97.1
37 TraesCS2B01G361100 chr5B 96.875 32 1 0 279 310 491096336 491096367 2.000000e-03 54.7
38 TraesCS2B01G361100 chr4A 96.667 210 7 0 1 210 695990731 695990522 2.730000e-92 350.0
39 TraesCS2B01G361100 chr4A 93.814 97 5 1 4220 4315 697982981 697983077 1.380000e-30 145.0
40 TraesCS2B01G361100 chr4A 83.673 98 7 6 3088 3176 25026062 25025965 3.060000e-12 84.2
41 TraesCS2B01G361100 chr4A 88.525 61 5 2 3129 3187 714308525 714308465 6.620000e-09 73.1
42 TraesCS2B01G361100 chr4A 100.000 33 0 0 279 311 420036276 420036244 1.430000e-05 62.1
43 TraesCS2B01G361100 chr4A 100.000 31 0 0 279 309 519227225 519227255 1.850000e-04 58.4
44 TraesCS2B01G361100 chr5D 94.059 101 4 2 4218 4316 504792923 504793023 8.270000e-33 152.0
45 TraesCS2B01G361100 chr5D 84.211 95 7 4 3089 3180 45490974 45490885 8.510000e-13 86.1
46 TraesCS2B01G361100 chr5D 95.833 48 2 0 3129 3176 422766710 422766663 1.420000e-10 78.7
47 TraesCS2B01G361100 chr5D 100.000 31 0 0 279 309 413354874 413354844 1.850000e-04 58.4
48 TraesCS2B01G361100 chr7B 93.814 97 4 2 4219 4314 440325695 440325600 1.380000e-30 145.0
49 TraesCS2B01G361100 chr7B 83.158 95 10 3 3084 3176 29827093 29827003 1.100000e-11 82.4
50 TraesCS2B01G361100 chr7B 95.833 48 2 0 3129 3176 195210270 195210317 1.420000e-10 78.7
51 TraesCS2B01G361100 chr7B 94.737 38 1 1 274 310 567572969 567572932 1.850000e-04 58.4
52 TraesCS2B01G361100 chr3B 95.506 89 3 1 4226 4313 460164334 460164246 1.790000e-29 141.0
53 TraesCS2B01G361100 chr7A 92.708 96 5 2 4219 4312 108210518 108210423 2.320000e-28 137.0
54 TraesCS2B01G361100 chr7A 83.636 110 16 2 1192 1300 190014766 190014874 8.450000e-18 102.0
55 TraesCS2B01G361100 chr7A 100.000 32 0 0 279 310 725802655 725802686 5.160000e-05 60.2
56 TraesCS2B01G361100 chr6D 88.182 110 10 3 4217 4324 429715371 429715263 1.390000e-25 128.0
57 TraesCS2B01G361100 chr7D 83.636 110 16 2 1198 1306 181846213 181846105 8.450000e-18 102.0
58 TraesCS2B01G361100 chrUn 82.609 92 14 1 3085 3176 62656205 62656116 3.960000e-11 80.5
59 TraesCS2B01G361100 chr4D 82.022 89 14 1 3088 3176 32055948 32056034 1.840000e-09 75.0
60 TraesCS2B01G361100 chr5A 97.368 38 1 0 279 316 23906493 23906530 1.110000e-06 65.8
61 TraesCS2B01G361100 chr5A 97.143 35 1 0 278 312 268467805 268467771 5.160000e-05 60.2
62 TraesCS2B01G361100 chr5A 79.000 100 12 5 3086 3176 569720066 569720165 5.160000e-05 60.2
63 TraesCS2B01G361100 chr1B 100.000 33 0 0 3082 3114 583163536 583163568 1.430000e-05 62.1
64 TraesCS2B01G361100 chr1B 97.059 34 1 0 276 309 316265869 316265902 1.850000e-04 58.4
65 TraesCS2B01G361100 chr1B 100.000 31 0 0 279 309 453870529 453870559 1.850000e-04 58.4
66 TraesCS2B01G361100 chr4B 94.444 36 2 0 279 314 252981785 252981750 6.670000e-04 56.5
67 TraesCS2B01G361100 chr4B 100.000 28 0 0 282 309 496286720 496286693 9.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G361100 chr2B 514318721 514323492 4771 True 8813.000000 8813 100.000000 1 4772 1 chr2B.!!$R1 4771
1 TraesCS2B01G361100 chr2B 514341160 514343995 2835 True 612.000000 926 84.508000 895 3581 2 chr2B.!!$R2 2686
2 TraesCS2B01G361100 chr2A 550872941 550873743 802 False 926.000000 926 87.763000 911 1704 1 chr2A.!!$F2 793
3 TraesCS2B01G361100 chr2A 550883011 550888811 5800 False 608.500000 1522 91.100625 310 4670 8 chr2A.!!$F3 4360
4 TraesCS2B01G361100 chr2D 437900747 437901585 838 True 939.000000 939 87.234000 880 1704 1 chr2D.!!$R2 824
5 TraesCS2B01G361100 chr2D 437871272 437875036 3764 True 576.166667 1487 89.985500 309 3738 6 chr2D.!!$R3 3429
6 TraesCS2B01G361100 chr6B 422654925 422655549 624 True 529.000000 529 81.978000 1076 1700 1 chr6B.!!$R1 624
7 TraesCS2B01G361100 chr6A 387279609 387280233 624 False 496.000000 496 81.021000 1076 1700 1 chr6A.!!$F1 624

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
619 709 0.389948 CCCTCAACTGTCGTAGTGCC 60.390 60.000 0.00 0.00 40.26 5.01 F
802 1063 1.063166 GCTGCACTAGCGCATTTCC 59.937 57.895 11.47 0.00 46.23 3.13 F
2004 3757 0.179108 GGAGGCCACGTGACAGATAC 60.179 60.000 19.30 1.52 0.00 2.24 F
3098 5671 0.179073 CAAGGCATGTACTCCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1988 3741 0.530744 TCAGTATCTGTCACGTGGCC 59.469 55.000 19.06 8.45 32.61 5.36 R
2341 4815 1.205655 CTTCGTCTGAGATGAGGGCAA 59.794 52.381 5.94 0.00 0.00 4.52 R
3108 5681 0.615331 ACCGATGCCAACTGTCATCT 59.385 50.000 6.45 0.00 37.52 2.90 R
4456 7358 1.213537 CTCCCGTTGCAATGCTTGG 59.786 57.895 13.42 9.39 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.919385 ATTTGAAACCCTGCCATCTTATAAT 57.081 32.000 0.00 0.00 0.00 1.28
25 26 6.713762 TTGAAACCCTGCCATCTTATAATG 57.286 37.500 0.00 0.00 0.00 1.90
51 52 9.855021 GGAGAATCTATAAGAGAGTATTCAAGC 57.145 37.037 0.00 0.00 37.70 4.01
56 57 9.926158 ATCTATAAGAGAGTATTCAAGCATGTG 57.074 33.333 0.00 0.00 37.70 3.21
57 58 8.918116 TCTATAAGAGAGTATTCAAGCATGTGT 58.082 33.333 0.00 0.00 0.00 3.72
58 59 9.190858 CTATAAGAGAGTATTCAAGCATGTGTC 57.809 37.037 0.00 0.00 0.00 3.67
59 60 5.674052 AGAGAGTATTCAAGCATGTGTCT 57.326 39.130 0.00 0.00 0.00 3.41
60 61 5.659463 AGAGAGTATTCAAGCATGTGTCTC 58.341 41.667 0.00 0.00 0.00 3.36
61 62 5.421693 AGAGAGTATTCAAGCATGTGTCTCT 59.578 40.000 0.00 0.00 33.36 3.10
62 63 6.047511 AGAGTATTCAAGCATGTGTCTCTT 57.952 37.500 0.00 0.00 0.00 2.85
63 64 6.105333 AGAGTATTCAAGCATGTGTCTCTTC 58.895 40.000 0.00 0.00 0.00 2.87
64 65 5.798132 AGTATTCAAGCATGTGTCTCTTCA 58.202 37.500 0.00 0.00 0.00 3.02
65 66 5.641209 AGTATTCAAGCATGTGTCTCTTCAC 59.359 40.000 0.00 0.00 38.63 3.18
76 77 5.670485 TGTGTCTCTTCACACTTACATTGT 58.330 37.500 5.40 0.00 45.98 2.71
77 78 6.811954 TGTGTCTCTTCACACTTACATTGTA 58.188 36.000 5.40 0.00 45.98 2.41
78 79 7.269316 TGTGTCTCTTCACACTTACATTGTAA 58.731 34.615 8.86 8.86 45.98 2.41
79 80 7.438160 TGTGTCTCTTCACACTTACATTGTAAG 59.562 37.037 27.30 27.30 45.98 2.34
80 81 7.652105 GTGTCTCTTCACACTTACATTGTAAGA 59.348 37.037 32.89 16.33 43.00 2.10
81 82 7.867909 TGTCTCTTCACACTTACATTGTAAGAG 59.132 37.037 32.89 28.24 36.82 2.85
82 83 8.082852 GTCTCTTCACACTTACATTGTAAGAGA 58.917 37.037 32.89 24.29 38.96 3.10
83 84 8.300286 TCTCTTCACACTTACATTGTAAGAGAG 58.700 37.037 32.89 29.54 37.93 3.20
84 85 7.952671 TCTTCACACTTACATTGTAAGAGAGT 58.047 34.615 32.89 25.07 0.00 3.24
85 86 8.082852 TCTTCACACTTACATTGTAAGAGAGTC 58.917 37.037 32.89 0.00 0.00 3.36
86 87 7.526142 TCACACTTACATTGTAAGAGAGTCT 57.474 36.000 32.89 14.11 0.00 3.24
87 88 7.952671 TCACACTTACATTGTAAGAGAGTCTT 58.047 34.615 32.89 13.51 40.35 3.01
88 89 8.421784 TCACACTTACATTGTAAGAGAGTCTTT 58.578 33.333 32.89 12.91 37.89 2.52
89 90 8.491152 CACACTTACATTGTAAGAGAGTCTTTG 58.509 37.037 32.89 22.56 37.89 2.77
90 91 8.421784 ACACTTACATTGTAAGAGAGTCTTTGA 58.578 33.333 32.89 0.65 37.89 2.69
91 92 9.261180 CACTTACATTGTAAGAGAGTCTTTGAA 57.739 33.333 32.89 1.91 37.89 2.69
92 93 9.832445 ACTTACATTGTAAGAGAGTCTTTGAAA 57.168 29.630 32.89 1.34 37.89 2.69
94 95 9.832445 TTACATTGTAAGAGAGTCTTTGAAACT 57.168 29.630 5.14 0.00 37.89 2.66
95 96 8.147642 ACATTGTAAGAGAGTCTTTGAAACTG 57.852 34.615 0.00 0.00 37.89 3.16
96 97 7.770897 ACATTGTAAGAGAGTCTTTGAAACTGT 59.229 33.333 0.00 0.00 37.89 3.55
97 98 9.261180 CATTGTAAGAGAGTCTTTGAAACTGTA 57.739 33.333 0.00 0.00 37.89 2.74
129 130 7.773489 TCTATCTGAGTGGAAATAGAGATGG 57.227 40.000 0.00 0.00 0.00 3.51
130 131 7.530435 TCTATCTGAGTGGAAATAGAGATGGA 58.470 38.462 0.00 0.00 0.00 3.41
131 132 8.176105 TCTATCTGAGTGGAAATAGAGATGGAT 58.824 37.037 0.00 0.00 0.00 3.41
132 133 6.416631 TCTGAGTGGAAATAGAGATGGATG 57.583 41.667 0.00 0.00 0.00 3.51
133 134 5.901853 TCTGAGTGGAAATAGAGATGGATGT 59.098 40.000 0.00 0.00 0.00 3.06
134 135 6.385176 TCTGAGTGGAAATAGAGATGGATGTT 59.615 38.462 0.00 0.00 0.00 2.71
135 136 6.351711 TGAGTGGAAATAGAGATGGATGTTG 58.648 40.000 0.00 0.00 0.00 3.33
136 137 5.688807 AGTGGAAATAGAGATGGATGTTGG 58.311 41.667 0.00 0.00 0.00 3.77
137 138 5.192522 AGTGGAAATAGAGATGGATGTTGGT 59.807 40.000 0.00 0.00 0.00 3.67
138 139 5.297776 GTGGAAATAGAGATGGATGTTGGTG 59.702 44.000 0.00 0.00 0.00 4.17
139 140 5.191522 TGGAAATAGAGATGGATGTTGGTGA 59.808 40.000 0.00 0.00 0.00 4.02
140 141 6.126390 TGGAAATAGAGATGGATGTTGGTGAT 60.126 38.462 0.00 0.00 0.00 3.06
141 142 6.206243 GGAAATAGAGATGGATGTTGGTGATG 59.794 42.308 0.00 0.00 0.00 3.07
142 143 5.901413 ATAGAGATGGATGTTGGTGATGT 57.099 39.130 0.00 0.00 0.00 3.06
143 144 7.379059 AATAGAGATGGATGTTGGTGATGTA 57.621 36.000 0.00 0.00 0.00 2.29
144 145 5.901413 AGAGATGGATGTTGGTGATGTAT 57.099 39.130 0.00 0.00 0.00 2.29
145 146 6.257994 AGAGATGGATGTTGGTGATGTATT 57.742 37.500 0.00 0.00 0.00 1.89
146 147 6.060136 AGAGATGGATGTTGGTGATGTATTG 58.940 40.000 0.00 0.00 0.00 1.90
147 148 6.005066 AGATGGATGTTGGTGATGTATTGA 57.995 37.500 0.00 0.00 0.00 2.57
148 149 6.425735 AGATGGATGTTGGTGATGTATTGAA 58.574 36.000 0.00 0.00 0.00 2.69
149 150 7.064866 AGATGGATGTTGGTGATGTATTGAAT 58.935 34.615 0.00 0.00 0.00 2.57
150 151 6.698008 TGGATGTTGGTGATGTATTGAATC 57.302 37.500 0.00 0.00 0.00 2.52
151 152 6.425735 TGGATGTTGGTGATGTATTGAATCT 58.574 36.000 0.00 0.00 0.00 2.40
152 153 6.543465 TGGATGTTGGTGATGTATTGAATCTC 59.457 38.462 0.00 0.00 0.00 2.75
153 154 6.293081 GGATGTTGGTGATGTATTGAATCTCG 60.293 42.308 0.00 0.00 0.00 4.04
154 155 5.729510 TGTTGGTGATGTATTGAATCTCGA 58.270 37.500 0.00 0.00 0.00 4.04
155 156 6.348498 TGTTGGTGATGTATTGAATCTCGAT 58.652 36.000 0.00 0.00 0.00 3.59
156 157 7.496747 TGTTGGTGATGTATTGAATCTCGATA 58.503 34.615 0.00 0.00 0.00 2.92
157 158 7.438160 TGTTGGTGATGTATTGAATCTCGATAC 59.562 37.037 6.99 6.99 41.81 2.24
164 165 7.412137 TGTATTGAATCTCGATACATTGCAG 57.588 36.000 11.19 0.00 44.56 4.41
165 166 5.936686 ATTGAATCTCGATACATTGCAGG 57.063 39.130 0.00 0.00 0.00 4.85
166 167 4.670896 TGAATCTCGATACATTGCAGGA 57.329 40.909 0.00 0.00 0.00 3.86
167 168 4.625028 TGAATCTCGATACATTGCAGGAG 58.375 43.478 0.00 0.00 0.00 3.69
168 169 4.342092 TGAATCTCGATACATTGCAGGAGA 59.658 41.667 0.00 0.00 35.28 3.71
169 170 5.011431 TGAATCTCGATACATTGCAGGAGAT 59.989 40.000 0.00 0.00 41.58 2.75
170 171 4.511617 TCTCGATACATTGCAGGAGATC 57.488 45.455 0.00 0.00 0.00 2.75
171 172 4.148079 TCTCGATACATTGCAGGAGATCT 58.852 43.478 0.00 0.00 0.00 2.75
172 173 4.217334 TCTCGATACATTGCAGGAGATCTC 59.783 45.833 14.75 14.75 0.00 2.75
173 174 3.891366 TCGATACATTGCAGGAGATCTCA 59.109 43.478 23.85 3.53 0.00 3.27
174 175 4.525874 TCGATACATTGCAGGAGATCTCAT 59.474 41.667 23.85 15.01 0.00 2.90
175 176 4.863689 CGATACATTGCAGGAGATCTCATC 59.136 45.833 23.85 13.03 0.00 2.92
176 177 5.566230 CGATACATTGCAGGAGATCTCATCA 60.566 44.000 23.85 14.45 0.00 3.07
177 178 4.498894 ACATTGCAGGAGATCTCATCAA 57.501 40.909 23.85 21.03 0.00 2.57
178 179 4.452825 ACATTGCAGGAGATCTCATCAAG 58.547 43.478 23.85 16.62 0.00 3.02
179 180 4.163649 ACATTGCAGGAGATCTCATCAAGA 59.836 41.667 23.85 5.82 38.72 3.02
181 182 5.369409 TTGCAGGAGATCTCATCAAGATT 57.631 39.130 23.85 0.00 45.06 2.40
182 183 5.369409 TGCAGGAGATCTCATCAAGATTT 57.631 39.130 23.85 0.00 45.06 2.17
183 184 6.490241 TGCAGGAGATCTCATCAAGATTTA 57.510 37.500 23.85 0.00 45.06 1.40
184 185 6.892485 TGCAGGAGATCTCATCAAGATTTAA 58.108 36.000 23.85 0.00 45.06 1.52
185 186 7.515586 TGCAGGAGATCTCATCAAGATTTAAT 58.484 34.615 23.85 0.00 45.06 1.40
186 187 7.660617 TGCAGGAGATCTCATCAAGATTTAATC 59.339 37.037 23.85 0.00 45.06 1.75
187 188 7.879160 GCAGGAGATCTCATCAAGATTTAATCT 59.121 37.037 23.85 0.99 45.06 2.40
188 189 9.426837 CAGGAGATCTCATCAAGATTTAATCTC 57.573 37.037 23.85 12.49 45.06 2.75
189 190 8.306038 AGGAGATCTCATCAAGATTTAATCTCG 58.694 37.037 23.85 0.00 45.06 4.04
190 191 7.063308 GGAGATCTCATCAAGATTTAATCTCGC 59.937 40.741 23.85 0.00 45.06 5.03
191 192 7.440198 AGATCTCATCAAGATTTAATCTCGCA 58.560 34.615 8.00 0.00 45.06 5.10
192 193 7.599621 AGATCTCATCAAGATTTAATCTCGCAG 59.400 37.037 8.00 1.46 45.06 5.18
193 194 6.809869 TCTCATCAAGATTTAATCTCGCAGA 58.190 36.000 8.00 5.15 39.08 4.26
211 212 6.379386 TCGCAGAGTTTATCGAATGTATAGG 58.621 40.000 0.00 0.00 0.00 2.57
212 213 6.206048 TCGCAGAGTTTATCGAATGTATAGGA 59.794 38.462 0.00 0.00 0.00 2.94
213 214 6.861572 CGCAGAGTTTATCGAATGTATAGGAA 59.138 38.462 0.00 0.00 0.00 3.36
214 215 7.061210 CGCAGAGTTTATCGAATGTATAGGAAG 59.939 40.741 0.00 0.00 0.00 3.46
215 216 7.148722 GCAGAGTTTATCGAATGTATAGGAAGC 60.149 40.741 0.00 0.00 0.00 3.86
216 217 7.867909 CAGAGTTTATCGAATGTATAGGAAGCA 59.132 37.037 0.00 0.00 0.00 3.91
217 218 8.589338 AGAGTTTATCGAATGTATAGGAAGCAT 58.411 33.333 0.00 0.00 0.00 3.79
218 219 9.209175 GAGTTTATCGAATGTATAGGAAGCATT 57.791 33.333 0.00 0.00 35.78 3.56
219 220 8.993121 AGTTTATCGAATGTATAGGAAGCATTG 58.007 33.333 0.00 0.00 33.56 2.82
220 221 5.869753 ATCGAATGTATAGGAAGCATTGC 57.130 39.130 0.00 0.00 36.28 3.56
221 222 4.702831 TCGAATGTATAGGAAGCATTGCA 58.297 39.130 11.91 0.00 39.77 4.08
222 223 5.308014 TCGAATGTATAGGAAGCATTGCAT 58.692 37.500 11.91 0.00 39.77 3.96
223 224 5.179929 TCGAATGTATAGGAAGCATTGCATG 59.820 40.000 11.91 0.00 39.77 4.06
224 225 5.049198 CGAATGTATAGGAAGCATTGCATGT 60.049 40.000 11.91 0.00 39.77 3.21
225 226 6.147656 CGAATGTATAGGAAGCATTGCATGTA 59.852 38.462 11.91 0.00 39.77 2.29
226 227 7.148356 CGAATGTATAGGAAGCATTGCATGTAT 60.148 37.037 11.91 4.99 39.77 2.29
227 228 9.166173 GAATGTATAGGAAGCATTGCATGTATA 57.834 33.333 11.91 4.09 39.77 1.47
228 229 9.690913 AATGTATAGGAAGCATTGCATGTATAT 57.309 29.630 11.91 5.26 39.77 0.86
229 230 8.496707 TGTATAGGAAGCATTGCATGTATATG 57.503 34.615 11.91 0.00 39.77 1.78
230 231 8.102676 TGTATAGGAAGCATTGCATGTATATGT 58.897 33.333 11.91 0.00 39.77 2.29
231 232 5.700722 AGGAAGCATTGCATGTATATGTG 57.299 39.130 11.91 0.00 39.77 3.21
232 233 4.521639 AGGAAGCATTGCATGTATATGTGG 59.478 41.667 11.91 0.00 39.77 4.17
233 234 4.520111 GGAAGCATTGCATGTATATGTGGA 59.480 41.667 11.91 0.00 35.98 4.02
234 235 5.184479 GGAAGCATTGCATGTATATGTGGAT 59.816 40.000 11.91 0.00 35.98 3.41
235 236 6.294899 GGAAGCATTGCATGTATATGTGGATT 60.295 38.462 11.91 0.00 35.98 3.01
236 237 6.020971 AGCATTGCATGTATATGTGGATTG 57.979 37.500 11.91 0.00 36.65 2.67
237 238 5.771165 AGCATTGCATGTATATGTGGATTGA 59.229 36.000 11.91 0.00 36.65 2.57
238 239 6.265876 AGCATTGCATGTATATGTGGATTGAA 59.734 34.615 11.91 0.00 36.65 2.69
239 240 6.924612 GCATTGCATGTATATGTGGATTGAAA 59.075 34.615 3.15 0.00 36.65 2.69
240 241 7.438757 GCATTGCATGTATATGTGGATTGAAAA 59.561 33.333 3.15 0.00 36.65 2.29
241 242 9.483916 CATTGCATGTATATGTGGATTGAAAAT 57.516 29.630 1.14 0.00 36.65 1.82
243 244 9.887629 TTGCATGTATATGTGGATTGAAAATTT 57.112 25.926 1.14 0.00 36.65 1.82
285 286 8.840867 CAAATTTTGAACTCTAATAAGACGTGC 58.159 33.333 2.88 0.00 0.00 5.34
286 287 7.667043 ATTTTGAACTCTAATAAGACGTGCA 57.333 32.000 0.00 0.00 0.00 4.57
287 288 7.667043 TTTTGAACTCTAATAAGACGTGCAT 57.333 32.000 0.00 0.00 0.00 3.96
288 289 7.667043 TTTGAACTCTAATAAGACGTGCATT 57.333 32.000 0.00 0.00 0.00 3.56
289 290 6.647212 TGAACTCTAATAAGACGTGCATTG 57.353 37.500 0.00 0.00 0.00 2.82
290 291 5.063438 TGAACTCTAATAAGACGTGCATTGC 59.937 40.000 0.46 0.46 0.00 3.56
291 292 4.503910 ACTCTAATAAGACGTGCATTGCA 58.496 39.130 7.38 7.38 35.60 4.08
308 309 1.359848 GCACGTGCATGCTTACTAGT 58.640 50.000 34.52 0.00 42.62 2.57
311 312 3.060272 GCACGTGCATGCTTACTAGTATG 60.060 47.826 34.52 7.42 44.50 2.39
417 419 1.714794 TTTGCGCAGAAGTAGAGAGC 58.285 50.000 11.31 0.00 0.00 4.09
418 420 0.891373 TTGCGCAGAAGTAGAGAGCT 59.109 50.000 11.31 0.00 0.00 4.09
419 421 1.751437 TGCGCAGAAGTAGAGAGCTA 58.249 50.000 5.66 0.00 0.00 3.32
420 422 1.402259 TGCGCAGAAGTAGAGAGCTAC 59.598 52.381 5.66 0.00 45.92 3.58
431 433 2.021457 AGAGAGCTACTTCTTCCGCTC 58.979 52.381 0.00 0.00 46.89 5.03
439 441 1.550976 ACTTCTTCCGCTCCTCGAAAT 59.449 47.619 0.00 0.00 41.67 2.17
456 458 6.183360 CCTCGAAATAAGTGAGTGTTGACATC 60.183 42.308 0.00 0.00 0.00 3.06
557 646 4.255833 AGTCTGAAACTGCTCTTGAGAG 57.744 45.455 3.63 3.63 44.75 3.20
567 656 7.665561 AACTGCTCTTGAGAGAAATCTTTAC 57.334 36.000 12.07 0.00 44.74 2.01
568 657 6.763355 ACTGCTCTTGAGAGAAATCTTTACA 58.237 36.000 12.07 0.00 44.74 2.41
569 658 6.648725 ACTGCTCTTGAGAGAAATCTTTACAC 59.351 38.462 12.07 0.00 44.74 2.90
570 659 5.635280 TGCTCTTGAGAGAAATCTTTACACG 59.365 40.000 12.07 0.00 44.74 4.49
571 660 5.445275 GCTCTTGAGAGAAATCTTTACACGC 60.445 44.000 12.07 0.00 44.74 5.34
572 661 4.929808 TCTTGAGAGAAATCTTTACACGCC 59.070 41.667 0.00 0.00 0.00 5.68
612 702 3.126831 GCAATCTATCCCTCAACTGTCG 58.873 50.000 0.00 0.00 0.00 4.35
618 708 0.601558 TCCCTCAACTGTCGTAGTGC 59.398 55.000 0.00 0.00 40.26 4.40
619 709 0.389948 CCCTCAACTGTCGTAGTGCC 60.390 60.000 0.00 0.00 40.26 5.01
663 759 2.889522 AAAGGGGCTGAGGGAGTATA 57.110 50.000 0.00 0.00 0.00 1.47
708 804 9.775854 ATGGTCAAAAATTGATTTACACATGAA 57.224 25.926 0.00 0.00 42.47 2.57
737 998 7.437713 ACATGACTATTTGTAGATGAAGGGA 57.562 36.000 0.00 0.00 0.00 4.20
738 999 7.861629 ACATGACTATTTGTAGATGAAGGGAA 58.138 34.615 0.00 0.00 0.00 3.97
802 1063 1.063166 GCTGCACTAGCGCATTTCC 59.937 57.895 11.47 0.00 46.23 3.13
830 1091 3.768633 CATCCGAAGAGGGAAGTGG 57.231 57.895 0.00 0.00 40.09 4.00
831 1092 1.195115 CATCCGAAGAGGGAAGTGGA 58.805 55.000 0.00 0.00 40.09 4.02
852 2267 3.174779 AGAAGACTCCCTCAGTTAACCC 58.825 50.000 0.88 0.00 34.41 4.11
856 2271 2.576648 GACTCCCTCAGTTAACCCCAAT 59.423 50.000 0.88 0.00 34.41 3.16
862 2277 4.777366 CCCTCAGTTAACCCCAATCAAAAT 59.223 41.667 0.88 0.00 0.00 1.82
864 2279 6.127451 CCCTCAGTTAACCCCAATCAAAATAC 60.127 42.308 0.88 0.00 0.00 1.89
865 2280 6.127451 CCTCAGTTAACCCCAATCAAAATACC 60.127 42.308 0.88 0.00 0.00 2.73
868 2283 6.210584 CAGTTAACCCCAATCAAAATACCACT 59.789 38.462 0.88 0.00 0.00 4.00
875 2290 6.542370 CCCCAATCAAAATACCACTAGTAGTG 59.458 42.308 21.39 21.39 45.53 2.74
929 2347 2.049433 ACACCGCGAAACTCCTCG 60.049 61.111 8.23 0.00 41.84 4.63
1050 2479 1.299850 CCGTCTCACTGTTGCGTCA 60.300 57.895 0.00 0.00 0.00 4.35
1052 2481 1.139989 CGTCTCACTGTTGCGTCAAT 58.860 50.000 0.00 0.00 0.00 2.57
1053 2482 1.526887 CGTCTCACTGTTGCGTCAATT 59.473 47.619 0.00 0.00 0.00 2.32
1054 2483 2.660094 CGTCTCACTGTTGCGTCAATTG 60.660 50.000 0.00 0.00 0.00 2.32
1466 2914 2.809601 GTCGGCGTGCTCGTCAAT 60.810 61.111 13.64 0.00 42.21 2.57
1790 3392 3.299503 GCATAAATCAGGGACCCACATT 58.700 45.455 14.60 7.23 0.00 2.71
1792 3394 4.162131 GCATAAATCAGGGACCCACATTTT 59.838 41.667 19.70 12.96 0.00 1.82
1794 3396 6.041979 GCATAAATCAGGGACCCACATTTTAT 59.958 38.462 19.70 15.53 0.00 1.40
1804 3406 6.818142 GGGACCCACATTTTATTTTGAATCAG 59.182 38.462 5.33 0.00 0.00 2.90
1875 3477 1.278238 GTCACATCGTTAAGCCGAGG 58.722 55.000 0.00 0.00 43.64 4.63
1897 3499 8.483307 GAGGTGTCGATGTTTACCTAATTTAA 57.517 34.615 0.00 0.00 43.28 1.52
1948 3550 8.044309 ACTACAATGTTGGTGTGTATTATGCTA 58.956 33.333 0.00 0.00 0.00 3.49
1949 3551 7.880160 ACAATGTTGGTGTGTATTATGCTAT 57.120 32.000 0.00 0.00 0.00 2.97
1950 3552 8.972458 ACAATGTTGGTGTGTATTATGCTATA 57.028 30.769 0.00 0.00 0.00 1.31
1981 3710 6.721318 TGCATTTAATTACTGTTCTCCCTCT 58.279 36.000 0.00 0.00 0.00 3.69
1984 3737 7.554476 GCATTTAATTACTGTTCTCCCTCTCTT 59.446 37.037 0.00 0.00 0.00 2.85
1996 3749 1.079543 CTCTCTTGGAGGCCACGTG 60.080 63.158 9.08 9.08 38.35 4.49
2000 3753 1.669115 CTTGGAGGCCACGTGACAG 60.669 63.158 19.30 0.72 30.78 3.51
2004 3757 0.179108 GGAGGCCACGTGACAGATAC 60.179 60.000 19.30 1.52 0.00 2.24
2007 3760 0.530744 GGCCACGTGACAGATACTGA 59.469 55.000 19.30 0.00 35.18 3.41
2012 3765 4.377431 GCCACGTGACAGATACTGAAAAAG 60.377 45.833 19.30 0.00 35.18 2.27
2019 3773 8.162880 CGTGACAGATACTGAAAAAGAATACAC 58.837 37.037 5.76 0.00 35.18 2.90
2286 4625 6.260050 TCTTTTCTTTGTGTATGTCACTGGTC 59.740 38.462 0.00 0.00 46.27 4.02
2299 4638 7.682787 ATGTCACTGGTCTTCCTAGATTATT 57.317 36.000 0.00 0.00 31.86 1.40
2300 4639 8.783660 ATGTCACTGGTCTTCCTAGATTATTA 57.216 34.615 0.00 0.00 31.86 0.98
2341 4815 1.351350 GGGGGCTCACAAGAAGTTACT 59.649 52.381 0.00 0.00 0.00 2.24
2356 4830 3.445008 AGTTACTTGCCCTCATCTCAGA 58.555 45.455 0.00 0.00 0.00 3.27
2491 4971 5.069501 AGTACAGGAACAAAGGTATCGAC 57.930 43.478 0.00 0.00 0.00 4.20
2547 5030 5.890110 ATAGTCGATGCATTTCACTAACG 57.110 39.130 14.03 5.82 0.00 3.18
2564 5047 5.853282 CACTAACGGCTCAAAAGAAAATCTG 59.147 40.000 0.00 0.00 0.00 2.90
2568 5051 4.518970 ACGGCTCAAAAGAAAATCTGCTTA 59.481 37.500 0.00 0.00 0.00 3.09
2749 5251 9.056005 TGATGTTTCTGTATATTTCATGGTAGC 57.944 33.333 0.00 0.00 0.00 3.58
2805 5328 8.805175 TGACATTTTTATGATTTGACACTCCAT 58.195 29.630 0.00 0.00 0.00 3.41
2820 5343 6.072175 TGACACTCCATTTGTTAAAGGTATGC 60.072 38.462 0.00 0.00 0.00 3.14
2922 5468 6.954944 TCAATTAGTTGTGCACTTGTACTTC 58.045 36.000 19.41 0.00 36.88 3.01
2939 5485 2.434336 ACTTCTACTGGACAGTGTGCAA 59.566 45.455 18.66 3.96 42.52 4.08
2966 5512 1.273606 CATAGCCACTGACGGGGATAG 59.726 57.143 0.00 0.00 0.00 2.08
2979 5526 1.144057 GGATAGCAGTGACACGGGG 59.856 63.158 7.85 0.00 0.00 5.73
3004 5577 6.601741 TTCAACAAGAAACCAAATTCATGC 57.398 33.333 0.00 0.00 32.69 4.06
3011 5584 4.283978 AGAAACCAAATTCATGCCATGTGA 59.716 37.500 4.31 0.00 0.00 3.58
3015 5588 6.488769 ACCAAATTCATGCCATGTGAATAT 57.511 33.333 4.31 0.68 43.49 1.28
3024 5597 4.707105 TGCCATGTGAATATAGTGTGAGG 58.293 43.478 0.00 0.00 0.00 3.86
3048 5621 6.183360 GGACTTAACGAGTGTCACTTCAAAAA 60.183 38.462 7.00 0.00 39.19 1.94
3077 5650 5.648092 TGTCCTATAGCTTCTTCTTTTTGGC 59.352 40.000 0.00 0.00 0.00 4.52
3095 5668 2.311287 CCCAAGGCATGTACTCCCT 58.689 57.895 0.00 0.00 0.00 4.20
3096 5669 0.181350 CCCAAGGCATGTACTCCCTC 59.819 60.000 0.00 0.00 0.00 4.30
3097 5670 0.181350 CCAAGGCATGTACTCCCTCC 59.819 60.000 0.00 0.00 0.00 4.30
3098 5671 0.179073 CAAGGCATGTACTCCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
3099 5672 0.617820 AAGGCATGTACTCCCTCCGT 60.618 55.000 0.00 0.00 0.00 4.69
3102 5675 1.653151 GCATGTACTCCCTCCGTTTC 58.347 55.000 0.00 0.00 0.00 2.78
3103 5676 1.066430 GCATGTACTCCCTCCGTTTCA 60.066 52.381 0.00 0.00 0.00 2.69
3104 5677 2.614481 GCATGTACTCCCTCCGTTTCAA 60.614 50.000 0.00 0.00 0.00 2.69
3105 5678 3.670625 CATGTACTCCCTCCGTTTCAAA 58.329 45.455 0.00 0.00 0.00 2.69
3107 5680 4.360951 TGTACTCCCTCCGTTTCAAAAT 57.639 40.909 0.00 0.00 0.00 1.82
3108 5681 5.486735 TGTACTCCCTCCGTTTCAAAATA 57.513 39.130 0.00 0.00 0.00 1.40
3109 5682 5.484715 TGTACTCCCTCCGTTTCAAAATAG 58.515 41.667 0.00 0.00 0.00 1.73
3112 5685 5.186198 ACTCCCTCCGTTTCAAAATAGATG 58.814 41.667 0.00 0.00 0.00 2.90
3114 5687 5.183228 TCCCTCCGTTTCAAAATAGATGAC 58.817 41.667 0.00 0.00 0.00 3.06
3115 5688 4.941263 CCCTCCGTTTCAAAATAGATGACA 59.059 41.667 0.00 0.00 0.00 3.58
3118 5691 6.149474 CCTCCGTTTCAAAATAGATGACAGTT 59.851 38.462 0.00 0.00 0.00 3.16
3119 5692 6.898041 TCCGTTTCAAAATAGATGACAGTTG 58.102 36.000 0.00 0.00 0.00 3.16
3122 5695 6.446318 GTTTCAAAATAGATGACAGTTGGCA 58.554 36.000 0.00 0.00 37.54 4.92
3128 5701 3.159298 ATGACAGTTGGCATCGGTC 57.841 52.632 18.16 18.16 40.40 4.79
3130 5703 1.262417 TGACAGTTGGCATCGGTCTA 58.738 50.000 23.01 11.45 32.82 2.59
3131 5704 1.621317 TGACAGTTGGCATCGGTCTAA 59.379 47.619 23.01 7.35 32.82 2.10
3133 5706 3.270877 GACAGTTGGCATCGGTCTAAAT 58.729 45.455 17.84 0.00 0.00 1.40
3134 5707 3.686016 ACAGTTGGCATCGGTCTAAATT 58.314 40.909 0.00 0.00 0.00 1.82
3136 5709 5.250200 ACAGTTGGCATCGGTCTAAATTTA 58.750 37.500 0.00 0.00 0.00 1.40
3137 5710 5.354234 ACAGTTGGCATCGGTCTAAATTTAG 59.646 40.000 17.60 17.60 0.00 1.85
3138 5711 5.354234 CAGTTGGCATCGGTCTAAATTTAGT 59.646 40.000 21.69 2.73 32.61 2.24
3139 5712 6.537301 CAGTTGGCATCGGTCTAAATTTAGTA 59.463 38.462 21.69 8.68 32.61 1.82
3140 5713 6.537660 AGTTGGCATCGGTCTAAATTTAGTAC 59.462 38.462 21.69 17.57 32.61 2.73
3141 5714 5.979993 TGGCATCGGTCTAAATTTAGTACA 58.020 37.500 21.69 3.41 32.61 2.90
3142 5715 6.408035 TGGCATCGGTCTAAATTTAGTACAA 58.592 36.000 21.69 12.11 32.61 2.41
3143 5716 6.879993 TGGCATCGGTCTAAATTTAGTACAAA 59.120 34.615 21.69 11.85 32.61 2.83
3144 5717 7.065324 TGGCATCGGTCTAAATTTAGTACAAAG 59.935 37.037 21.69 11.97 32.61 2.77
3145 5718 7.065443 GGCATCGGTCTAAATTTAGTACAAAGT 59.935 37.037 21.69 4.45 32.61 2.66
3146 5719 8.114905 GCATCGGTCTAAATTTAGTACAAAGTC 58.885 37.037 21.69 7.57 32.61 3.01
3147 5720 7.801547 TCGGTCTAAATTTAGTACAAAGTCG 57.198 36.000 21.69 15.73 32.61 4.18
3148 5721 7.592938 TCGGTCTAAATTTAGTACAAAGTCGA 58.407 34.615 21.69 17.15 32.61 4.20
3149 5722 7.752239 TCGGTCTAAATTTAGTACAAAGTCGAG 59.248 37.037 21.69 0.00 32.61 4.04
3150 5723 7.540055 CGGTCTAAATTTAGTACAAAGTCGAGT 59.460 37.037 21.69 0.00 32.61 4.18
3151 5724 8.858186 GGTCTAAATTTAGTACAAAGTCGAGTC 58.142 37.037 21.69 0.00 32.61 3.36
3152 5725 9.403110 GTCTAAATTTAGTACAAAGTCGAGTCA 57.597 33.333 21.69 0.00 32.61 3.41
3162 5735 9.268268 AGTACAAAGTCGAGTCATTTATTTTGA 57.732 29.630 0.00 0.00 0.00 2.69
3163 5736 9.872757 GTACAAAGTCGAGTCATTTATTTTGAA 57.127 29.630 0.00 0.00 0.00 2.69
3165 5738 9.233232 ACAAAGTCGAGTCATTTATTTTGAAAC 57.767 29.630 0.00 0.00 0.00 2.78
3166 5739 8.409690 CAAAGTCGAGTCATTTATTTTGAAACG 58.590 33.333 0.00 0.00 0.00 3.60
3167 5740 6.599437 AGTCGAGTCATTTATTTTGAAACGG 58.401 36.000 0.00 0.00 0.00 4.44
3168 5741 6.425721 AGTCGAGTCATTTATTTTGAAACGGA 59.574 34.615 0.00 0.00 0.00 4.69
3169 5742 6.736853 GTCGAGTCATTTATTTTGAAACGGAG 59.263 38.462 0.00 0.00 0.00 4.63
3170 5743 6.021596 CGAGTCATTTATTTTGAAACGGAGG 58.978 40.000 0.00 0.00 0.00 4.30
3171 5744 6.267496 AGTCATTTATTTTGAAACGGAGGG 57.733 37.500 0.00 0.00 0.00 4.30
3172 5745 6.007703 AGTCATTTATTTTGAAACGGAGGGA 58.992 36.000 0.00 0.00 0.00 4.20
3182 5755 3.835978 TGAAACGGAGGGAGTAAATCAGA 59.164 43.478 0.00 0.00 0.00 3.27
3204 5800 1.956043 GCAGTTGGCATCGGTTCAA 59.044 52.632 0.00 0.00 43.97 2.69
3289 5885 3.842923 CGATCAGGCAGGCGTCCT 61.843 66.667 0.00 0.00 0.00 3.85
3345 5941 0.531974 CCGTGCGCTACATTGGGTAT 60.532 55.000 9.73 0.00 0.00 2.73
3399 5995 2.517598 CGTGTGGTTCCTCTTCACG 58.482 57.895 0.00 0.00 43.77 4.35
3420 6016 4.899239 GTCCCTGAGCCCATCGCG 62.899 72.222 0.00 0.00 44.76 5.87
3502 6098 3.057736 CAGAAAGAAAGCCATGTGAGTGG 60.058 47.826 0.00 0.00 42.35 4.00
3544 6141 3.304257 CTCATACGCTCTCAAAGATCGG 58.696 50.000 5.36 0.00 38.09 4.18
3634 6445 4.746535 TTCGGTTGCCAGTCATCTTATA 57.253 40.909 0.00 0.00 0.00 0.98
3635 6446 4.955811 TCGGTTGCCAGTCATCTTATAT 57.044 40.909 0.00 0.00 0.00 0.86
3641 6452 6.376978 GTTGCCAGTCATCTTATATTGATGC 58.623 40.000 11.37 8.18 40.59 3.91
3642 6453 5.872963 TGCCAGTCATCTTATATTGATGCT 58.127 37.500 11.37 9.64 40.59 3.79
3668 6479 2.291465 CAGTGTGTATTGTGCTTGCACT 59.709 45.455 23.53 9.52 36.32 4.40
3701 6512 6.838090 TGTTTCTTGGATTTGGATGGCATATA 59.162 34.615 0.00 0.00 0.00 0.86
3717 6536 7.090319 TGGCATATATACCATCTTGTTCCTT 57.910 36.000 0.02 0.00 0.00 3.36
3738 6557 5.234543 CCTTCTAGCTAATAAAAGGTCGTGC 59.765 44.000 12.49 0.00 33.36 5.34
3739 6558 5.593679 TCTAGCTAATAAAAGGTCGTGCT 57.406 39.130 0.00 0.00 0.00 4.40
3740 6559 5.589192 TCTAGCTAATAAAAGGTCGTGCTC 58.411 41.667 0.00 0.00 0.00 4.26
3741 6560 3.532542 AGCTAATAAAAGGTCGTGCTCC 58.467 45.455 0.00 0.00 0.00 4.70
3746 6627 0.602905 AAAAGGTCGTGCTCCTTCCG 60.603 55.000 0.00 0.00 43.50 4.30
3757 6638 2.432874 TGCTCCTTCCGATCCGAATTAA 59.567 45.455 0.00 0.00 0.00 1.40
3762 6643 5.297547 TCCTTCCGATCCGAATTAATTGAG 58.702 41.667 5.17 0.00 0.00 3.02
3766 6647 3.753272 CCGATCCGAATTAATTGAGGCAT 59.247 43.478 5.17 5.08 0.00 4.40
3794 6676 2.093447 ACAATGTAAAGCGGAGGGAGAG 60.093 50.000 0.00 0.00 0.00 3.20
3801 6689 1.626686 AGCGGAGGGAGAGACATATG 58.373 55.000 0.00 0.00 0.00 1.78
3802 6690 1.133325 AGCGGAGGGAGAGACATATGT 60.133 52.381 8.43 8.43 0.00 2.29
3804 6692 1.615883 CGGAGGGAGAGACATATGTGG 59.384 57.143 14.43 0.00 0.00 4.17
3812 6700 5.455326 GGGAGAGACATATGTGGTAAGCAAT 60.455 44.000 14.43 0.00 0.00 3.56
3813 6701 6.239600 GGGAGAGACATATGTGGTAAGCAATA 60.240 42.308 14.43 0.00 0.00 1.90
3826 6714 5.889289 TGGTAAGCAATACAAACTAATCCCC 59.111 40.000 2.63 0.00 36.14 4.81
3827 6715 5.301045 GGTAAGCAATACAAACTAATCCCCC 59.699 44.000 2.63 0.00 36.14 5.40
3893 6781 1.153429 CGTAACCTAGGGGTGCAGC 60.153 63.158 14.81 7.55 46.67 5.25
3954 6842 2.358737 CGAGTGTCCAGTTGGGCC 60.359 66.667 0.00 0.00 39.61 5.80
3958 6846 3.948719 TGTCCAGTTGGGCCGACC 61.949 66.667 20.56 5.63 39.61 4.79
3971 6859 1.017387 GCCGACCAATTAGCTTCCTG 58.983 55.000 0.00 0.00 0.00 3.86
3975 6863 2.677902 CGACCAATTAGCTTCCTGCAGA 60.678 50.000 17.39 0.00 45.94 4.26
3977 6865 3.950395 GACCAATTAGCTTCCTGCAGATT 59.050 43.478 17.39 1.59 45.94 2.40
4036 6936 9.275398 TGCTTTGCTCATATTTTCAAGAAAAAT 57.725 25.926 11.53 4.37 46.72 1.82
4214 7114 8.928733 ACTTGTTCATGACATTTAAATTCATGC 58.071 29.630 27.32 20.96 44.22 4.06
4215 7115 8.828688 TTGTTCATGACATTTAAATTCATGCA 57.171 26.923 27.32 21.47 44.22 3.96
4216 7116 9.438228 TTGTTCATGACATTTAAATTCATGCAT 57.562 25.926 27.32 14.59 44.22 3.96
4217 7117 9.438228 TGTTCATGACATTTAAATTCATGCATT 57.562 25.926 27.32 10.31 44.22 3.56
4240 7140 1.961133 AAAATACTCCCTCCGTCCCA 58.039 50.000 0.00 0.00 0.00 4.37
4241 7141 2.191981 AAATACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
4242 7142 3.339713 AAATACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
4243 7143 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
4244 7144 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
4245 7145 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
4246 7146 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
4247 7147 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
4248 7148 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
4249 7149 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
4250 7150 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
4251 7151 3.583086 CCCTCCGTCCCATAATGTAAGAT 59.417 47.826 0.00 0.00 0.00 2.40
4252 7152 4.563580 CCCTCCGTCCCATAATGTAAGATG 60.564 50.000 0.00 0.00 0.00 2.90
4253 7153 4.040461 CCTCCGTCCCATAATGTAAGATGT 59.960 45.833 0.00 0.00 0.00 3.06
4254 7154 5.454755 CCTCCGTCCCATAATGTAAGATGTT 60.455 44.000 0.00 0.00 0.00 2.71
4255 7155 5.996644 TCCGTCCCATAATGTAAGATGTTT 58.003 37.500 0.00 0.00 0.00 2.83
4256 7156 6.419791 TCCGTCCCATAATGTAAGATGTTTT 58.580 36.000 0.00 0.00 0.00 2.43
4257 7157 6.887545 TCCGTCCCATAATGTAAGATGTTTTT 59.112 34.615 0.00 0.00 0.00 1.94
4286 7186 7.211966 ACTAGTGTAGTGTCATAAAACGTCT 57.788 36.000 0.00 0.00 37.69 4.18
4287 7187 7.655490 ACTAGTGTAGTGTCATAAAACGTCTT 58.345 34.615 0.00 0.00 37.69 3.01
4288 7188 8.786898 ACTAGTGTAGTGTCATAAAACGTCTTA 58.213 33.333 0.00 0.00 37.69 2.10
4289 7189 7.864307 AGTGTAGTGTCATAAAACGTCTTAC 57.136 36.000 0.00 0.00 0.00 2.34
4290 7190 7.428020 AGTGTAGTGTCATAAAACGTCTTACA 58.572 34.615 0.00 0.00 0.00 2.41
4291 7191 8.086522 AGTGTAGTGTCATAAAACGTCTTACAT 58.913 33.333 0.00 0.00 0.00 2.29
4292 7192 8.706035 GTGTAGTGTCATAAAACGTCTTACATT 58.294 33.333 0.00 0.00 0.00 2.71
4293 7193 9.911138 TGTAGTGTCATAAAACGTCTTACATTA 57.089 29.630 0.00 0.00 0.00 1.90
4296 7196 8.879759 AGTGTCATAAAACGTCTTACATTATGG 58.120 33.333 0.00 0.00 35.62 2.74
4297 7197 8.120465 GTGTCATAAAACGTCTTACATTATGGG 58.880 37.037 0.00 0.00 35.62 4.00
4298 7198 8.041919 TGTCATAAAACGTCTTACATTATGGGA 58.958 33.333 0.00 0.00 35.62 4.37
4299 7199 8.333186 GTCATAAAACGTCTTACATTATGGGAC 58.667 37.037 0.00 1.75 35.62 4.46
4302 7202 3.720949 CGTCTTACATTATGGGACGGA 57.279 47.619 20.50 2.30 43.69 4.69
4303 7203 3.639538 CGTCTTACATTATGGGACGGAG 58.360 50.000 20.50 2.74 43.69 4.63
4304 7204 3.552273 CGTCTTACATTATGGGACGGAGG 60.552 52.174 20.50 5.87 43.69 4.30
4305 7205 3.640029 GTCTTACATTATGGGACGGAGGA 59.360 47.826 0.00 0.00 0.00 3.71
4306 7206 3.895656 TCTTACATTATGGGACGGAGGAG 59.104 47.826 0.00 0.00 0.00 3.69
4309 7209 3.858135 ACATTATGGGACGGAGGAGTAT 58.142 45.455 0.00 0.00 0.00 2.12
4318 7218 3.683340 GGACGGAGGAGTATGTTTTTGAC 59.317 47.826 0.00 0.00 0.00 3.18
4325 7225 8.293867 CGGAGGAGTATGTTTTTGACATTTTTA 58.706 33.333 0.00 0.00 46.80 1.52
4424 7326 7.921787 TGTTTCTACGTGTATTTGACAAATGT 58.078 30.769 21.21 13.43 40.66 2.71
4461 7363 6.819397 ACTTACTAGGAAAAATGTCCAAGC 57.181 37.500 0.00 0.00 40.48 4.01
4462 7364 6.303839 ACTTACTAGGAAAAATGTCCAAGCA 58.696 36.000 0.00 0.00 40.48 3.91
4510 7412 5.515982 CACATCTCGAAGAATGACTCAAGAG 59.484 44.000 8.60 0.00 34.09 2.85
4524 7426 2.828520 CTCAAGAGCCTTCACTCAGGTA 59.171 50.000 0.00 0.00 39.26 3.08
4540 7442 6.758886 CACTCAGGTACATGTCCTCTATTTTC 59.241 42.308 0.00 0.00 32.37 2.29
4547 7449 8.421784 GGTACATGTCCTCTATTTTCACATAGA 58.578 37.037 0.00 0.00 35.01 1.98
4565 7467 9.330063 TCACATAGAAATCCAACAATGTCTATC 57.670 33.333 0.00 0.00 35.06 2.08
4566 7468 8.562892 CACATAGAAATCCAACAATGTCTATCC 58.437 37.037 0.00 0.00 35.06 2.59
4567 7469 8.497745 ACATAGAAATCCAACAATGTCTATCCT 58.502 33.333 0.00 0.00 35.06 3.24
4568 7470 8.997323 CATAGAAATCCAACAATGTCTATCCTC 58.003 37.037 0.00 0.00 35.06 3.71
4569 7471 6.360618 AGAAATCCAACAATGTCTATCCTCC 58.639 40.000 0.00 0.00 0.00 4.30
4570 7472 4.713792 ATCCAACAATGTCTATCCTCCC 57.286 45.455 0.00 0.00 0.00 4.30
4571 7473 3.736094 TCCAACAATGTCTATCCTCCCT 58.264 45.455 0.00 0.00 0.00 4.20
4572 7474 3.711704 TCCAACAATGTCTATCCTCCCTC 59.288 47.826 0.00 0.00 0.00 4.30
4573 7475 3.455910 CCAACAATGTCTATCCTCCCTCA 59.544 47.826 0.00 0.00 0.00 3.86
4574 7476 4.446371 CAACAATGTCTATCCTCCCTCAC 58.554 47.826 0.00 0.00 0.00 3.51
4575 7477 3.724478 ACAATGTCTATCCTCCCTCACA 58.276 45.455 0.00 0.00 0.00 3.58
4576 7478 4.302067 ACAATGTCTATCCTCCCTCACAT 58.698 43.478 0.00 0.00 0.00 3.21
4580 7482 3.161866 GTCTATCCTCCCTCACATCCTC 58.838 54.545 0.00 0.00 0.00 3.71
4601 7503 0.546598 CCCCTCCCTTATGTGTGGTC 59.453 60.000 0.00 0.00 0.00 4.02
4603 7505 2.628559 CCCCTCCCTTATGTGTGGTCTA 60.629 54.545 0.00 0.00 0.00 2.59
4609 7511 7.236847 CCCTCCCTTATGTGTGGTCTATAATTA 59.763 40.741 0.00 0.00 0.00 1.40
4675 7577 9.922477 ATCCATAATATTCTCACGATAGGTAGA 57.078 33.333 0.00 0.00 43.77 2.59
4676 7578 9.749340 TCCATAATATTCTCACGATAGGTAGAA 57.251 33.333 0.00 0.00 42.53 2.10
4726 7628 8.387354 TGTTTTATTATGCACAGTATTCTCACG 58.613 33.333 0.00 0.00 0.00 4.35
4727 7629 8.600625 GTTTTATTATGCACAGTATTCTCACGA 58.399 33.333 0.00 0.00 0.00 4.35
4728 7630 8.887036 TTTATTATGCACAGTATTCTCACGAT 57.113 30.769 0.00 0.00 0.00 3.73
4729 7631 9.974980 TTTATTATGCACAGTATTCTCACGATA 57.025 29.630 0.00 0.00 0.00 2.92
4731 7633 8.694975 ATTATGCACAGTATTCTCACGATATC 57.305 34.615 0.00 0.00 0.00 1.63
4732 7634 4.871513 TGCACAGTATTCTCACGATATCC 58.128 43.478 0.00 0.00 0.00 2.59
4733 7635 4.340950 TGCACAGTATTCTCACGATATCCA 59.659 41.667 0.00 0.00 0.00 3.41
4734 7636 4.920340 GCACAGTATTCTCACGATATCCAG 59.080 45.833 0.00 0.00 0.00 3.86
4735 7637 5.278512 GCACAGTATTCTCACGATATCCAGA 60.279 44.000 0.00 0.00 0.00 3.86
4736 7638 6.735968 GCACAGTATTCTCACGATATCCAGAA 60.736 42.308 8.24 8.24 0.00 3.02
4737 7639 6.860539 CACAGTATTCTCACGATATCCAGAAG 59.139 42.308 10.57 0.00 0.00 2.85
4738 7640 6.547880 ACAGTATTCTCACGATATCCAGAAGT 59.452 38.462 10.57 3.30 0.00 3.01
4739 7641 7.068839 ACAGTATTCTCACGATATCCAGAAGTT 59.931 37.037 10.57 1.37 0.00 2.66
4740 7642 8.568794 CAGTATTCTCACGATATCCAGAAGTTA 58.431 37.037 10.57 0.69 0.00 2.24
4741 7643 9.132923 AGTATTCTCACGATATCCAGAAGTTAA 57.867 33.333 10.57 0.00 0.00 2.01
4742 7644 9.745880 GTATTCTCACGATATCCAGAAGTTAAA 57.254 33.333 10.57 0.00 0.00 1.52
4744 7646 9.667107 ATTCTCACGATATCCAGAAGTTAAAAA 57.333 29.630 10.57 0.00 0.00 1.94
4745 7647 8.475331 TCTCACGATATCCAGAAGTTAAAAAC 57.525 34.615 0.00 0.00 0.00 2.43
4746 7648 8.092068 TCTCACGATATCCAGAAGTTAAAAACA 58.908 33.333 0.00 0.00 0.00 2.83
4747 7649 8.610248 TCACGATATCCAGAAGTTAAAAACAA 57.390 30.769 0.00 0.00 0.00 2.83
4748 7650 9.058174 TCACGATATCCAGAAGTTAAAAACAAA 57.942 29.630 0.00 0.00 0.00 2.83
4749 7651 9.672086 CACGATATCCAGAAGTTAAAAACAAAA 57.328 29.630 0.00 0.00 0.00 2.44
4750 7652 9.893305 ACGATATCCAGAAGTTAAAAACAAAAG 57.107 29.630 0.00 0.00 0.00 2.27
4753 7655 9.914131 ATATCCAGAAGTTAAAAACAAAAGAGC 57.086 29.630 0.00 0.00 0.00 4.09
4754 7656 7.164230 TCCAGAAGTTAAAAACAAAAGAGCA 57.836 32.000 0.00 0.00 0.00 4.26
4755 7657 7.607250 TCCAGAAGTTAAAAACAAAAGAGCAA 58.393 30.769 0.00 0.00 0.00 3.91
4756 7658 8.091449 TCCAGAAGTTAAAAACAAAAGAGCAAA 58.909 29.630 0.00 0.00 0.00 3.68
4757 7659 8.882736 CCAGAAGTTAAAAACAAAAGAGCAAAT 58.117 29.630 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.202029 CCATTATAAGATGGCAGGGTTTCAAAT 60.202 37.037 0.00 0.00 40.11 2.32
1 2 6.098124 CCATTATAAGATGGCAGGGTTTCAAA 59.902 38.462 0.00 0.00 40.11 2.69
3 4 5.103728 TCCATTATAAGATGGCAGGGTTTCA 60.104 40.000 0.00 0.00 45.07 2.69
4 5 5.385198 TCCATTATAAGATGGCAGGGTTTC 58.615 41.667 0.00 0.00 45.07 2.78
5 6 5.134339 TCTCCATTATAAGATGGCAGGGTTT 59.866 40.000 0.00 0.00 45.07 3.27
6 7 4.665009 TCTCCATTATAAGATGGCAGGGTT 59.335 41.667 0.00 0.00 45.07 4.11
7 8 4.242811 TCTCCATTATAAGATGGCAGGGT 58.757 43.478 0.00 0.00 45.07 4.34
8 9 4.916041 TCTCCATTATAAGATGGCAGGG 57.084 45.455 0.00 0.00 45.07 4.45
9 10 6.719301 AGATTCTCCATTATAAGATGGCAGG 58.281 40.000 0.00 0.00 45.07 4.85
25 26 9.855021 GCTTGAATACTCTCTTATAGATTCTCC 57.145 37.037 0.00 0.00 32.41 3.71
30 31 9.926158 CACATGCTTGAATACTCTCTTATAGAT 57.074 33.333 6.60 0.00 32.41 1.98
31 32 8.918116 ACACATGCTTGAATACTCTCTTATAGA 58.082 33.333 6.60 0.00 0.00 1.98
32 33 9.190858 GACACATGCTTGAATACTCTCTTATAG 57.809 37.037 6.60 0.00 0.00 1.31
33 34 8.918116 AGACACATGCTTGAATACTCTCTTATA 58.082 33.333 6.60 0.00 0.00 0.98
34 35 7.790027 AGACACATGCTTGAATACTCTCTTAT 58.210 34.615 6.60 0.00 0.00 1.73
35 36 7.123397 AGAGACACATGCTTGAATACTCTCTTA 59.877 37.037 6.60 0.00 0.00 2.10
36 37 6.047511 AGACACATGCTTGAATACTCTCTT 57.952 37.500 6.60 0.00 0.00 2.85
37 38 5.421693 AGAGACACATGCTTGAATACTCTCT 59.578 40.000 6.60 9.18 0.00 3.10
38 39 5.659463 AGAGACACATGCTTGAATACTCTC 58.341 41.667 6.60 7.38 0.00 3.20
39 40 5.674052 AGAGACACATGCTTGAATACTCT 57.326 39.130 6.60 10.77 0.00 3.24
40 41 5.871524 TGAAGAGACACATGCTTGAATACTC 59.128 40.000 6.60 8.97 0.00 2.59
41 42 5.641209 GTGAAGAGACACATGCTTGAATACT 59.359 40.000 6.60 0.61 40.11 2.12
42 43 5.409520 TGTGAAGAGACACATGCTTGAATAC 59.590 40.000 6.60 0.00 44.29 1.89
43 44 5.550290 TGTGAAGAGACACATGCTTGAATA 58.450 37.500 6.60 0.00 44.29 1.75
44 45 4.392047 TGTGAAGAGACACATGCTTGAAT 58.608 39.130 6.60 0.00 44.29 2.57
45 46 3.807553 TGTGAAGAGACACATGCTTGAA 58.192 40.909 6.60 0.00 44.29 2.69
46 47 3.473923 TGTGAAGAGACACATGCTTGA 57.526 42.857 6.60 0.00 44.29 3.02
65 66 8.818141 TCAAAGACTCTCTTACAATGTAAGTG 57.182 34.615 26.55 24.31 35.27 3.16
66 67 9.832445 TTTCAAAGACTCTCTTACAATGTAAGT 57.168 29.630 26.55 12.91 35.27 2.24
68 69 9.832445 AGTTTCAAAGACTCTCTTACAATGTAA 57.168 29.630 5.66 5.66 35.27 2.41
69 70 9.261180 CAGTTTCAAAGACTCTCTTACAATGTA 57.739 33.333 0.00 0.00 35.27 2.29
70 71 7.770897 ACAGTTTCAAAGACTCTCTTACAATGT 59.229 33.333 0.00 0.00 35.27 2.71
71 72 8.147642 ACAGTTTCAAAGACTCTCTTACAATG 57.852 34.615 0.00 0.00 35.27 2.82
103 104 8.814931 CCATCTCTATTTCCACTCAGATAGAAT 58.185 37.037 0.00 0.00 32.45 2.40
104 105 8.007153 TCCATCTCTATTTCCACTCAGATAGAA 58.993 37.037 0.00 0.00 32.45 2.10
105 106 7.530435 TCCATCTCTATTTCCACTCAGATAGA 58.470 38.462 0.00 0.00 32.05 1.98
106 107 7.773489 TCCATCTCTATTTCCACTCAGATAG 57.227 40.000 0.00 0.00 0.00 2.08
107 108 7.732140 ACATCCATCTCTATTTCCACTCAGATA 59.268 37.037 0.00 0.00 0.00 1.98
108 109 6.558014 ACATCCATCTCTATTTCCACTCAGAT 59.442 38.462 0.00 0.00 0.00 2.90
109 110 5.901853 ACATCCATCTCTATTTCCACTCAGA 59.098 40.000 0.00 0.00 0.00 3.27
110 111 6.172136 ACATCCATCTCTATTTCCACTCAG 57.828 41.667 0.00 0.00 0.00 3.35
111 112 6.351711 CAACATCCATCTCTATTTCCACTCA 58.648 40.000 0.00 0.00 0.00 3.41
112 113 5.762218 CCAACATCCATCTCTATTTCCACTC 59.238 44.000 0.00 0.00 0.00 3.51
113 114 5.192522 ACCAACATCCATCTCTATTTCCACT 59.807 40.000 0.00 0.00 0.00 4.00
114 115 5.297776 CACCAACATCCATCTCTATTTCCAC 59.702 44.000 0.00 0.00 0.00 4.02
115 116 5.191522 TCACCAACATCCATCTCTATTTCCA 59.808 40.000 0.00 0.00 0.00 3.53
116 117 5.684704 TCACCAACATCCATCTCTATTTCC 58.315 41.667 0.00 0.00 0.00 3.13
117 118 6.769822 ACATCACCAACATCCATCTCTATTTC 59.230 38.462 0.00 0.00 0.00 2.17
118 119 6.666678 ACATCACCAACATCCATCTCTATTT 58.333 36.000 0.00 0.00 0.00 1.40
119 120 6.257994 ACATCACCAACATCCATCTCTATT 57.742 37.500 0.00 0.00 0.00 1.73
120 121 5.901413 ACATCACCAACATCCATCTCTAT 57.099 39.130 0.00 0.00 0.00 1.98
121 122 7.071071 TCAATACATCACCAACATCCATCTCTA 59.929 37.037 0.00 0.00 0.00 2.43
122 123 5.901413 ATACATCACCAACATCCATCTCT 57.099 39.130 0.00 0.00 0.00 3.10
123 124 6.057533 TCAATACATCACCAACATCCATCTC 58.942 40.000 0.00 0.00 0.00 2.75
124 125 6.005066 TCAATACATCACCAACATCCATCT 57.995 37.500 0.00 0.00 0.00 2.90
125 126 6.698008 TTCAATACATCACCAACATCCATC 57.302 37.500 0.00 0.00 0.00 3.51
126 127 7.064866 AGATTCAATACATCACCAACATCCAT 58.935 34.615 0.00 0.00 0.00 3.41
127 128 6.425735 AGATTCAATACATCACCAACATCCA 58.574 36.000 0.00 0.00 0.00 3.41
128 129 6.293081 CGAGATTCAATACATCACCAACATCC 60.293 42.308 0.00 0.00 0.00 3.51
129 130 6.479990 TCGAGATTCAATACATCACCAACATC 59.520 38.462 0.00 0.00 0.00 3.06
130 131 6.348498 TCGAGATTCAATACATCACCAACAT 58.652 36.000 0.00 0.00 0.00 2.71
131 132 5.729510 TCGAGATTCAATACATCACCAACA 58.270 37.500 0.00 0.00 0.00 3.33
132 133 6.851222 ATCGAGATTCAATACATCACCAAC 57.149 37.500 0.00 0.00 0.00 3.77
133 134 7.496747 TGTATCGAGATTCAATACATCACCAA 58.503 34.615 0.00 0.00 32.44 3.67
134 135 7.049799 TGTATCGAGATTCAATACATCACCA 57.950 36.000 0.00 0.00 32.44 4.17
135 136 8.438513 CAATGTATCGAGATTCAATACATCACC 58.561 37.037 14.51 0.00 42.74 4.02
136 137 7.954248 GCAATGTATCGAGATTCAATACATCAC 59.046 37.037 14.51 9.39 42.74 3.06
137 138 7.656948 TGCAATGTATCGAGATTCAATACATCA 59.343 33.333 14.51 9.67 42.74 3.07
138 139 8.021955 TGCAATGTATCGAGATTCAATACATC 57.978 34.615 14.51 8.10 42.74 3.06
139 140 7.118825 CCTGCAATGTATCGAGATTCAATACAT 59.881 37.037 10.90 10.90 44.46 2.29
140 141 6.424812 CCTGCAATGTATCGAGATTCAATACA 59.575 38.462 0.00 8.22 39.47 2.29
141 142 6.646653 TCCTGCAATGTATCGAGATTCAATAC 59.353 38.462 0.00 0.00 0.00 1.89
142 143 6.758254 TCCTGCAATGTATCGAGATTCAATA 58.242 36.000 0.00 0.00 0.00 1.90
143 144 5.614308 TCCTGCAATGTATCGAGATTCAAT 58.386 37.500 0.00 0.00 0.00 2.57
144 145 5.022282 TCCTGCAATGTATCGAGATTCAA 57.978 39.130 0.00 0.00 0.00 2.69
145 146 4.342092 TCTCCTGCAATGTATCGAGATTCA 59.658 41.667 0.00 0.00 0.00 2.57
146 147 4.876125 TCTCCTGCAATGTATCGAGATTC 58.124 43.478 0.00 0.00 0.00 2.52
147 148 4.944619 TCTCCTGCAATGTATCGAGATT 57.055 40.909 0.00 0.00 0.00 2.40
148 149 4.771577 AGATCTCCTGCAATGTATCGAGAT 59.228 41.667 9.60 9.60 39.24 2.75
149 150 4.148079 AGATCTCCTGCAATGTATCGAGA 58.852 43.478 0.00 1.95 0.00 4.04
150 151 4.022503 TGAGATCTCCTGCAATGTATCGAG 60.023 45.833 20.03 0.00 0.00 4.04
151 152 3.891366 TGAGATCTCCTGCAATGTATCGA 59.109 43.478 20.03 0.00 0.00 3.59
152 153 4.248691 TGAGATCTCCTGCAATGTATCG 57.751 45.455 20.03 0.00 0.00 2.92
153 154 5.791666 TGATGAGATCTCCTGCAATGTATC 58.208 41.667 20.03 12.43 0.00 2.24
154 155 5.820404 TGATGAGATCTCCTGCAATGTAT 57.180 39.130 20.03 3.27 0.00 2.29
155 156 5.364735 TCTTGATGAGATCTCCTGCAATGTA 59.635 40.000 20.03 7.39 0.00 2.29
156 157 4.163649 TCTTGATGAGATCTCCTGCAATGT 59.836 41.667 20.03 0.00 0.00 2.71
157 158 4.704965 TCTTGATGAGATCTCCTGCAATG 58.295 43.478 20.03 13.29 0.00 2.82
158 159 5.570205 ATCTTGATGAGATCTCCTGCAAT 57.430 39.130 20.03 6.24 41.31 3.56
159 160 5.369409 AATCTTGATGAGATCTCCTGCAA 57.631 39.130 20.03 17.79 44.41 4.08
160 161 5.369409 AAATCTTGATGAGATCTCCTGCA 57.631 39.130 20.03 11.97 44.41 4.41
161 162 7.879160 AGATTAAATCTTGATGAGATCTCCTGC 59.121 37.037 20.03 9.57 44.41 4.85
162 163 9.426837 GAGATTAAATCTTGATGAGATCTCCTG 57.573 37.037 20.03 5.85 44.41 3.86
163 164 8.306038 CGAGATTAAATCTTGATGAGATCTCCT 58.694 37.037 20.03 10.42 44.41 3.69
164 165 7.063308 GCGAGATTAAATCTTGATGAGATCTCC 59.937 40.741 20.03 6.16 44.41 3.71
165 166 7.598118 TGCGAGATTAAATCTTGATGAGATCTC 59.402 37.037 16.21 16.21 44.41 2.75
166 167 7.440198 TGCGAGATTAAATCTTGATGAGATCT 58.560 34.615 0.00 0.00 44.41 2.75
167 168 7.598118 TCTGCGAGATTAAATCTTGATGAGATC 59.402 37.037 0.00 0.00 44.41 2.75
169 170 6.809869 TCTGCGAGATTAAATCTTGATGAGA 58.190 36.000 0.00 0.00 42.34 3.27
170 171 6.700960 ACTCTGCGAGATTAAATCTTGATGAG 59.299 38.462 11.64 4.84 42.34 2.90
171 172 6.577103 ACTCTGCGAGATTAAATCTTGATGA 58.423 36.000 11.64 0.00 42.34 2.92
172 173 6.841443 ACTCTGCGAGATTAAATCTTGATG 57.159 37.500 11.64 0.00 42.34 3.07
173 174 7.856145 AAACTCTGCGAGATTAAATCTTGAT 57.144 32.000 11.64 0.00 42.34 2.57
174 175 8.948631 ATAAACTCTGCGAGATTAAATCTTGA 57.051 30.769 11.64 0.00 42.34 3.02
175 176 8.000991 CGATAAACTCTGCGAGATTAAATCTTG 58.999 37.037 11.64 0.00 40.38 3.02
176 177 7.921214 TCGATAAACTCTGCGAGATTAAATCTT 59.079 33.333 11.64 0.00 40.38 2.40
177 178 7.426410 TCGATAAACTCTGCGAGATTAAATCT 58.574 34.615 11.64 0.00 43.70 2.40
178 179 7.624706 TCGATAAACTCTGCGAGATTAAATC 57.375 36.000 11.64 6.82 32.36 2.17
179 180 8.491152 CATTCGATAAACTCTGCGAGATTAAAT 58.509 33.333 11.64 5.76 32.36 1.40
180 181 7.491372 ACATTCGATAAACTCTGCGAGATTAAA 59.509 33.333 11.64 4.13 32.36 1.52
181 182 6.978659 ACATTCGATAAACTCTGCGAGATTAA 59.021 34.615 11.64 0.27 32.36 1.40
182 183 6.504398 ACATTCGATAAACTCTGCGAGATTA 58.496 36.000 11.64 10.42 32.95 1.75
183 184 5.352284 ACATTCGATAAACTCTGCGAGATT 58.648 37.500 11.64 8.81 34.01 2.40
184 185 4.938080 ACATTCGATAAACTCTGCGAGAT 58.062 39.130 11.64 0.00 34.01 2.75
185 186 4.371855 ACATTCGATAAACTCTGCGAGA 57.628 40.909 11.64 0.00 34.01 4.04
186 187 6.524933 CCTATACATTCGATAAACTCTGCGAG 59.475 42.308 4.36 4.36 34.01 5.03
187 188 6.206048 TCCTATACATTCGATAAACTCTGCGA 59.794 38.462 0.00 0.00 0.00 5.10
188 189 6.379386 TCCTATACATTCGATAAACTCTGCG 58.621 40.000 0.00 0.00 0.00 5.18
189 190 7.148722 GCTTCCTATACATTCGATAAACTCTGC 60.149 40.741 0.00 0.00 0.00 4.26
190 191 7.867909 TGCTTCCTATACATTCGATAAACTCTG 59.132 37.037 0.00 0.00 0.00 3.35
191 192 7.952671 TGCTTCCTATACATTCGATAAACTCT 58.047 34.615 0.00 0.00 0.00 3.24
192 193 8.764524 ATGCTTCCTATACATTCGATAAACTC 57.235 34.615 0.00 0.00 0.00 3.01
193 194 8.993121 CAATGCTTCCTATACATTCGATAAACT 58.007 33.333 0.00 0.00 31.82 2.66
194 195 7.746475 GCAATGCTTCCTATACATTCGATAAAC 59.254 37.037 0.00 0.00 31.82 2.01
195 196 7.443879 TGCAATGCTTCCTATACATTCGATAAA 59.556 33.333 6.82 0.00 31.82 1.40
196 197 6.934083 TGCAATGCTTCCTATACATTCGATAA 59.066 34.615 6.82 0.00 31.82 1.75
197 198 6.463360 TGCAATGCTTCCTATACATTCGATA 58.537 36.000 6.82 0.00 31.82 2.92
198 199 5.308014 TGCAATGCTTCCTATACATTCGAT 58.692 37.500 6.82 0.00 31.82 3.59
199 200 4.702831 TGCAATGCTTCCTATACATTCGA 58.297 39.130 6.82 0.00 31.82 3.71
200 201 5.388111 CATGCAATGCTTCCTATACATTCG 58.612 41.667 6.82 0.00 37.62 3.34
217 218 9.887629 AAATTTTCAATCCACATATACATGCAA 57.112 25.926 0.00 0.00 35.39 4.08
259 260 8.840867 GCACGTCTTATTAGAGTTCAAAATTTG 58.159 33.333 0.00 0.00 0.00 2.32
260 261 8.564574 TGCACGTCTTATTAGAGTTCAAAATTT 58.435 29.630 0.00 0.00 0.00 1.82
261 262 8.094798 TGCACGTCTTATTAGAGTTCAAAATT 57.905 30.769 0.00 0.00 0.00 1.82
262 263 7.667043 TGCACGTCTTATTAGAGTTCAAAAT 57.333 32.000 0.00 0.00 0.00 1.82
263 264 7.667043 ATGCACGTCTTATTAGAGTTCAAAA 57.333 32.000 0.00 0.00 0.00 2.44
264 265 7.518161 CAATGCACGTCTTATTAGAGTTCAAA 58.482 34.615 0.00 0.00 0.00 2.69
265 266 6.402118 GCAATGCACGTCTTATTAGAGTTCAA 60.402 38.462 0.00 0.00 0.00 2.69
266 267 5.063438 GCAATGCACGTCTTATTAGAGTTCA 59.937 40.000 0.00 0.00 0.00 3.18
267 268 5.063438 TGCAATGCACGTCTTATTAGAGTTC 59.937 40.000 2.72 0.00 31.71 3.01
268 269 4.935205 TGCAATGCACGTCTTATTAGAGTT 59.065 37.500 2.72 0.00 31.71 3.01
269 270 4.503910 TGCAATGCACGTCTTATTAGAGT 58.496 39.130 2.72 0.00 31.71 3.24
289 290 1.359848 ACTAGTAAGCATGCACGTGC 58.640 50.000 33.11 33.11 45.38 5.34
290 291 4.359706 TCATACTAGTAAGCATGCACGTG 58.640 43.478 21.98 12.28 0.00 4.49
291 292 4.649088 TCATACTAGTAAGCATGCACGT 57.351 40.909 21.98 7.14 0.00 4.49
292 293 5.966636 TTTCATACTAGTAAGCATGCACG 57.033 39.130 21.98 3.52 0.00 5.34
293 294 7.526608 TGTTTTTCATACTAGTAAGCATGCAC 58.473 34.615 21.98 10.48 0.00 4.57
294 295 7.680442 TGTTTTTCATACTAGTAAGCATGCA 57.320 32.000 21.98 0.00 0.00 3.96
295 296 9.573133 AATTGTTTTTCATACTAGTAAGCATGC 57.427 29.630 10.51 10.51 0.00 4.06
396 398 2.480419 GCTCTCTACTTCTGCGCAAAAA 59.520 45.455 13.05 8.20 0.00 1.94
397 399 2.069273 GCTCTCTACTTCTGCGCAAAA 58.931 47.619 13.05 2.85 0.00 2.44
398 400 1.273606 AGCTCTCTACTTCTGCGCAAA 59.726 47.619 13.05 8.18 0.00 3.68
399 401 0.891373 AGCTCTCTACTTCTGCGCAA 59.109 50.000 13.05 0.00 0.00 4.85
400 402 1.402259 GTAGCTCTCTACTTCTGCGCA 59.598 52.381 10.98 10.98 41.47 6.09
401 403 2.113910 GTAGCTCTCTACTTCTGCGC 57.886 55.000 0.00 0.00 41.47 6.09
409 411 2.946990 AGCGGAAGAAGTAGCTCTCTAC 59.053 50.000 0.00 0.00 44.27 2.59
410 412 3.284793 AGCGGAAGAAGTAGCTCTCTA 57.715 47.619 0.00 0.00 34.48 2.43
411 413 2.137810 AGCGGAAGAAGTAGCTCTCT 57.862 50.000 0.00 0.00 34.48 3.10
415 417 1.107945 GAGGAGCGGAAGAAGTAGCT 58.892 55.000 0.00 0.00 43.33 3.32
416 418 0.248702 CGAGGAGCGGAAGAAGTAGC 60.249 60.000 0.00 0.00 36.03 3.58
417 419 1.380524 TCGAGGAGCGGAAGAAGTAG 58.619 55.000 0.00 0.00 41.33 2.57
418 420 1.830279 TTCGAGGAGCGGAAGAAGTA 58.170 50.000 0.00 0.00 41.33 2.24
419 421 0.966920 TTTCGAGGAGCGGAAGAAGT 59.033 50.000 0.00 0.00 41.33 3.01
420 422 2.301577 ATTTCGAGGAGCGGAAGAAG 57.698 50.000 0.00 0.00 41.60 2.85
421 423 3.194968 ACTTATTTCGAGGAGCGGAAGAA 59.805 43.478 0.00 0.00 41.60 2.52
422 424 2.758979 ACTTATTTCGAGGAGCGGAAGA 59.241 45.455 0.00 0.00 41.60 2.87
424 426 2.494471 TCACTTATTTCGAGGAGCGGAA 59.506 45.455 0.00 0.00 42.70 4.30
431 433 4.988540 TGTCAACACTCACTTATTTCGAGG 59.011 41.667 0.00 0.00 0.00 4.63
505 594 6.971726 TCGTTGGTCTTCATACATATACCT 57.028 37.500 0.00 0.00 0.00 3.08
557 646 7.492352 AACCATATAGGCGTGTAAAGATTTC 57.508 36.000 0.00 0.00 43.14 2.17
567 656 5.560966 AACTTGAAAACCATATAGGCGTG 57.439 39.130 0.00 0.00 43.14 5.34
568 657 5.621329 GCAAACTTGAAAACCATATAGGCGT 60.621 40.000 0.00 0.00 43.14 5.68
569 658 4.798387 GCAAACTTGAAAACCATATAGGCG 59.202 41.667 0.00 0.00 43.14 5.52
570 659 5.719173 TGCAAACTTGAAAACCATATAGGC 58.281 37.500 0.00 0.00 43.14 3.93
571 660 8.253113 AGATTGCAAACTTGAAAACCATATAGG 58.747 33.333 1.71 0.00 45.67 2.57
639 735 3.681311 ACTCCCTCAGCCCCTTTATATT 58.319 45.455 0.00 0.00 0.00 1.28
645 741 4.719116 ATATATACTCCCTCAGCCCCTT 57.281 45.455 0.00 0.00 0.00 3.95
737 998 9.397280 GGTTAAAACCTCTGCTTCTCTTATATT 57.603 33.333 4.58 0.00 45.75 1.28
738 999 8.966069 GGTTAAAACCTCTGCTTCTCTTATAT 57.034 34.615 4.58 0.00 45.75 0.86
797 1058 0.395724 GGATGGCGAACAGGGGAAAT 60.396 55.000 0.00 0.00 0.00 2.17
798 1059 1.001393 GGATGGCGAACAGGGGAAA 60.001 57.895 0.00 0.00 0.00 3.13
802 1063 1.815421 CTTCGGATGGCGAACAGGG 60.815 63.158 0.00 0.00 0.00 4.45
830 1091 3.196039 GGGTTAACTGAGGGAGTCTTCTC 59.804 52.174 5.42 6.97 39.76 2.87
831 1092 3.174779 GGGTTAACTGAGGGAGTCTTCT 58.825 50.000 5.42 0.00 31.73 2.85
850 2265 6.542370 CACTACTAGTGGTATTTTGATTGGGG 59.458 42.308 11.97 0.00 42.35 4.96
852 2267 8.786826 TTCACTACTAGTGGTATTTTGATTGG 57.213 34.615 11.97 0.00 45.94 3.16
875 2290 6.432107 TGCTGGAACGTTGTTAACTTAATTC 58.568 36.000 5.00 6.03 0.00 2.17
914 2332 4.736896 GCCGAGGAGTTTCGCGGT 62.737 66.667 6.13 0.00 45.22 5.68
944 2362 3.551407 GGCCGGGGAGAGGATGAC 61.551 72.222 2.18 0.00 0.00 3.06
1310 2758 3.768185 GACCGCGGCGAGCTTATCA 62.768 63.158 28.58 0.00 45.59 2.15
1313 2761 4.189188 GAGACCGCGGCGAGCTTA 62.189 66.667 28.58 0.00 45.59 3.09
1466 2914 3.383681 TAGCAGTGGCCGGCGTTA 61.384 61.111 22.54 6.44 42.56 3.18
1844 3446 5.779806 AACGATGTGACACTATTTGTAGC 57.220 39.130 7.20 0.00 39.17 3.58
1909 3511 9.787435 ACCAACATTGTAGTAGAATGTAAAGAA 57.213 29.630 22.04 0.00 42.04 2.52
1922 3524 6.884295 AGCATAATACACACCAACATTGTAGT 59.116 34.615 0.00 0.00 0.00 2.73
1955 3557 7.836183 AGAGGGAGAACAGTAATTAAATGCAAT 59.164 33.333 0.00 0.00 0.00 3.56
1956 3558 7.175104 AGAGGGAGAACAGTAATTAAATGCAA 58.825 34.615 0.00 0.00 0.00 4.08
1966 3695 4.127918 TCCAAGAGAGGGAGAACAGTAA 57.872 45.455 0.00 0.00 0.00 2.24
1978 3707 1.079543 CACGTGGCCTCCAAGAGAG 60.080 63.158 7.95 0.00 42.83 3.20
1981 3710 2.099652 CTGTCACGTGGCCTCCAAGA 62.100 60.000 19.06 0.00 36.54 3.02
1984 3737 0.613572 TATCTGTCACGTGGCCTCCA 60.614 55.000 19.06 0.00 0.00 3.86
1988 3741 0.530744 TCAGTATCTGTCACGTGGCC 59.469 55.000 19.06 8.45 32.61 5.36
1996 3749 8.373992 GTCGTGTATTCTTTTTCAGTATCTGTC 58.626 37.037 0.00 0.00 32.61 3.51
2228 4555 5.589452 ACGTTTGTAACAATCCAAAGGTGTA 59.411 36.000 8.97 0.00 43.79 2.90
2299 4638 5.340611 CCCCTCCCTCGGTCTATTGTATATA 60.341 48.000 0.00 0.00 0.00 0.86
2300 4639 4.572223 CCCCTCCCTCGGTCTATTGTATAT 60.572 50.000 0.00 0.00 0.00 0.86
2325 4664 2.226674 GGGCAAGTAACTTCTTGTGAGC 59.773 50.000 7.98 0.00 44.41 4.26
2341 4815 1.205655 CTTCGTCTGAGATGAGGGCAA 59.794 52.381 5.94 0.00 0.00 4.52
2347 4821 5.541845 ACAAAATCACTTCGTCTGAGATGA 58.458 37.500 0.00 0.00 0.00 2.92
2349 4823 6.073003 GGAAACAAAATCACTTCGTCTGAGAT 60.073 38.462 0.00 0.00 0.00 2.75
2356 4830 9.244799 GAAAAATAGGAAACAAAATCACTTCGT 57.755 29.630 0.00 0.00 0.00 3.85
2392 4866 5.106830 CGTTATTGCCGGTTCTTAGAAACTT 60.107 40.000 8.46 0.00 0.00 2.66
2393 4867 4.390909 CGTTATTGCCGGTTCTTAGAAACT 59.609 41.667 8.46 0.00 0.00 2.66
2491 4971 1.240641 TTGGTACCTGGCATTGCACG 61.241 55.000 14.36 0.13 0.00 5.34
2547 5030 8.864024 GTTAATAAGCAGATTTTCTTTTGAGCC 58.136 33.333 0.00 0.00 0.00 4.70
2614 5112 3.703001 AGGGTTACATGAGACCAACAG 57.297 47.619 19.06 0.00 37.68 3.16
2721 5223 8.806429 ACCATGAAATATACAGAAACATCACA 57.194 30.769 0.00 0.00 0.00 3.58
2749 5251 8.980143 ATTGTTTATATTTTCCAAAGTGTCGG 57.020 30.769 0.00 0.00 0.00 4.79
2836 5382 6.126863 TGAGAGACCCATCAAAAATGTACT 57.873 37.500 0.00 0.00 0.00 2.73
2841 5387 9.710900 GTTTTAAATGAGAGACCCATCAAAAAT 57.289 29.630 0.00 0.00 0.00 1.82
2889 5435 8.671384 AGTGCACAACTAATTGAACTAACTTA 57.329 30.769 21.04 0.00 37.36 2.24
2922 5468 2.932614 GCTATTGCACACTGTCCAGTAG 59.067 50.000 0.00 0.00 38.21 2.57
2951 5497 1.330655 ACTGCTATCCCCGTCAGTGG 61.331 60.000 0.00 0.00 38.25 4.00
2958 5504 1.226974 CGTGTCACTGCTATCCCCG 60.227 63.158 0.65 0.00 0.00 5.73
2966 5512 1.098712 TTGAAACCCCGTGTCACTGC 61.099 55.000 0.65 0.00 28.50 4.40
3004 5577 6.166984 AGTCCTCACACTATATTCACATGG 57.833 41.667 0.00 0.00 0.00 3.66
3011 5584 7.122353 ACACTCGTTAAGTCCTCACACTATATT 59.878 37.037 0.00 0.00 35.45 1.28
3015 5588 4.139786 ACACTCGTTAAGTCCTCACACTA 58.860 43.478 0.00 0.00 35.45 2.74
3024 5597 5.961395 TTTGAAGTGACACTCGTTAAGTC 57.039 39.130 8.93 1.36 35.45 3.01
3066 5639 3.612517 GCCTTGGGCCAAAAAGAAG 57.387 52.632 21.28 7.07 44.06 2.85
3077 5650 4.986467 GGGAGTACATGCCTTGGG 57.014 61.111 0.00 0.00 36.22 4.12
3087 5660 5.727434 TCTATTTTGAAACGGAGGGAGTAC 58.273 41.667 0.00 0.00 0.00 2.73
3088 5661 6.155565 TCATCTATTTTGAAACGGAGGGAGTA 59.844 38.462 0.00 0.00 0.00 2.59
3090 5663 5.294552 GTCATCTATTTTGAAACGGAGGGAG 59.705 44.000 0.00 0.00 0.00 4.30
3091 5664 5.183228 GTCATCTATTTTGAAACGGAGGGA 58.817 41.667 0.00 0.00 0.00 4.20
3092 5665 4.941263 TGTCATCTATTTTGAAACGGAGGG 59.059 41.667 0.00 0.00 0.00 4.30
3093 5666 5.643777 ACTGTCATCTATTTTGAAACGGAGG 59.356 40.000 0.00 0.00 0.00 4.30
3095 5668 6.072728 CCAACTGTCATCTATTTTGAAACGGA 60.073 38.462 0.00 0.00 0.00 4.69
3096 5669 6.086222 CCAACTGTCATCTATTTTGAAACGG 58.914 40.000 0.00 0.00 0.00 4.44
3097 5670 5.569059 GCCAACTGTCATCTATTTTGAAACG 59.431 40.000 0.00 0.00 0.00 3.60
3098 5671 6.446318 TGCCAACTGTCATCTATTTTGAAAC 58.554 36.000 0.00 0.00 0.00 2.78
3099 5672 6.647334 TGCCAACTGTCATCTATTTTGAAA 57.353 33.333 0.00 0.00 0.00 2.69
3102 5675 5.268544 CGATGCCAACTGTCATCTATTTTG 58.731 41.667 6.45 0.00 37.52 2.44
3103 5676 4.336433 CCGATGCCAACTGTCATCTATTTT 59.664 41.667 6.45 0.00 37.52 1.82
3104 5677 3.879295 CCGATGCCAACTGTCATCTATTT 59.121 43.478 6.45 0.00 37.52 1.40
3105 5678 3.118261 ACCGATGCCAACTGTCATCTATT 60.118 43.478 6.45 0.00 37.52 1.73
3107 5680 1.831106 ACCGATGCCAACTGTCATCTA 59.169 47.619 6.45 0.00 37.52 1.98
3108 5681 0.615331 ACCGATGCCAACTGTCATCT 59.385 50.000 6.45 0.00 37.52 2.90
3109 5682 1.009829 GACCGATGCCAACTGTCATC 58.990 55.000 0.00 0.00 36.60 2.92
3112 5685 2.380084 TTAGACCGATGCCAACTGTC 57.620 50.000 0.00 0.00 0.00 3.51
3114 5687 4.701956 AAATTTAGACCGATGCCAACTG 57.298 40.909 0.00 0.00 0.00 3.16
3115 5688 5.497474 ACTAAATTTAGACCGATGCCAACT 58.503 37.500 27.92 1.83 34.84 3.16
3118 5691 5.979993 TGTACTAAATTTAGACCGATGCCA 58.020 37.500 27.92 11.16 34.84 4.92
3119 5692 6.913873 TTGTACTAAATTTAGACCGATGCC 57.086 37.500 27.92 9.21 34.84 4.40
3122 5695 8.246180 TCGACTTTGTACTAAATTTAGACCGAT 58.754 33.333 27.92 10.62 34.84 4.18
3123 5696 7.592938 TCGACTTTGTACTAAATTTAGACCGA 58.407 34.615 27.92 19.46 34.84 4.69
3124 5697 7.540055 ACTCGACTTTGTACTAAATTTAGACCG 59.460 37.037 27.92 18.07 34.84 4.79
3125 5698 8.754230 ACTCGACTTTGTACTAAATTTAGACC 57.246 34.615 27.92 18.06 34.84 3.85
3126 5699 9.403110 TGACTCGACTTTGTACTAAATTTAGAC 57.597 33.333 27.92 20.64 34.84 2.59
3136 5709 9.268268 TCAAAATAAATGACTCGACTTTGTACT 57.732 29.630 0.00 0.00 0.00 2.73
3137 5710 9.872757 TTCAAAATAAATGACTCGACTTTGTAC 57.127 29.630 0.00 0.00 0.00 2.90
3139 5712 9.233232 GTTTCAAAATAAATGACTCGACTTTGT 57.767 29.630 0.00 0.00 0.00 2.83
3140 5713 8.409690 CGTTTCAAAATAAATGACTCGACTTTG 58.590 33.333 0.00 0.00 0.00 2.77
3141 5714 7.589954 CCGTTTCAAAATAAATGACTCGACTTT 59.410 33.333 0.00 0.00 0.00 2.66
3142 5715 7.041644 TCCGTTTCAAAATAAATGACTCGACTT 60.042 33.333 0.00 0.00 0.00 3.01
3143 5716 6.425721 TCCGTTTCAAAATAAATGACTCGACT 59.574 34.615 0.00 0.00 0.00 4.18
3144 5717 6.595794 TCCGTTTCAAAATAAATGACTCGAC 58.404 36.000 0.00 0.00 0.00 4.20
3145 5718 6.128391 CCTCCGTTTCAAAATAAATGACTCGA 60.128 38.462 0.00 0.00 0.00 4.04
3146 5719 6.021596 CCTCCGTTTCAAAATAAATGACTCG 58.978 40.000 0.00 0.00 0.00 4.18
3147 5720 6.150474 TCCCTCCGTTTCAAAATAAATGACTC 59.850 38.462 0.00 0.00 0.00 3.36
3148 5721 6.007703 TCCCTCCGTTTCAAAATAAATGACT 58.992 36.000 0.00 0.00 0.00 3.41
3149 5722 6.072119 ACTCCCTCCGTTTCAAAATAAATGAC 60.072 38.462 0.00 0.00 0.00 3.06
3150 5723 6.007703 ACTCCCTCCGTTTCAAAATAAATGA 58.992 36.000 0.00 0.00 0.00 2.57
3151 5724 6.267496 ACTCCCTCCGTTTCAAAATAAATG 57.733 37.500 0.00 0.00 0.00 2.32
3152 5725 8.411991 TTTACTCCCTCCGTTTCAAAATAAAT 57.588 30.769 0.00 0.00 0.00 1.40
3153 5726 7.820578 TTTACTCCCTCCGTTTCAAAATAAA 57.179 32.000 0.00 0.00 0.00 1.40
3154 5727 7.666388 TGATTTACTCCCTCCGTTTCAAAATAA 59.334 33.333 0.00 0.00 0.00 1.40
3155 5728 7.169591 TGATTTACTCCCTCCGTTTCAAAATA 58.830 34.615 0.00 0.00 0.00 1.40
3156 5729 6.007703 TGATTTACTCCCTCCGTTTCAAAAT 58.992 36.000 0.00 0.00 0.00 1.82
3157 5730 5.378332 TGATTTACTCCCTCCGTTTCAAAA 58.622 37.500 0.00 0.00 0.00 2.44
3158 5731 4.975631 TGATTTACTCCCTCCGTTTCAAA 58.024 39.130 0.00 0.00 0.00 2.69
3159 5732 4.285003 TCTGATTTACTCCCTCCGTTTCAA 59.715 41.667 0.00 0.00 0.00 2.69
3160 5733 3.835978 TCTGATTTACTCCCTCCGTTTCA 59.164 43.478 0.00 0.00 0.00 2.69
3161 5734 4.467198 TCTGATTTACTCCCTCCGTTTC 57.533 45.455 0.00 0.00 0.00 2.78
3162 5735 4.903045 TTCTGATTTACTCCCTCCGTTT 57.097 40.909 0.00 0.00 0.00 3.60
3163 5736 4.903045 TTTCTGATTTACTCCCTCCGTT 57.097 40.909 0.00 0.00 0.00 4.44
3164 5737 4.833390 CTTTTCTGATTTACTCCCTCCGT 58.167 43.478 0.00 0.00 0.00 4.69
3165 5738 3.623510 GCTTTTCTGATTTACTCCCTCCG 59.376 47.826 0.00 0.00 0.00 4.63
3166 5739 4.589908 TGCTTTTCTGATTTACTCCCTCC 58.410 43.478 0.00 0.00 0.00 4.30
3167 5740 5.249420 ACTGCTTTTCTGATTTACTCCCTC 58.751 41.667 0.00 0.00 0.00 4.30
3168 5741 5.248380 ACTGCTTTTCTGATTTACTCCCT 57.752 39.130 0.00 0.00 0.00 4.20
3169 5742 5.335976 CCAACTGCTTTTCTGATTTACTCCC 60.336 44.000 0.00 0.00 0.00 4.30
3170 5743 5.703876 CCAACTGCTTTTCTGATTTACTCC 58.296 41.667 0.00 0.00 0.00 3.85
3171 5744 5.157067 GCCAACTGCTTTTCTGATTTACTC 58.843 41.667 0.00 0.00 36.87 2.59
3172 5745 4.584325 TGCCAACTGCTTTTCTGATTTACT 59.416 37.500 0.00 0.00 42.00 2.24
3182 5755 1.000274 GAACCGATGCCAACTGCTTTT 60.000 47.619 0.00 0.00 42.00 2.27
3204 5800 9.454585 CATACAAATTATTCAATCAGTTGCGAT 57.545 29.630 0.00 0.00 35.26 4.58
3255 5851 2.387445 CGAGGCCATTTTCGTCGCA 61.387 57.895 5.01 0.00 35.55 5.10
3399 5995 3.083997 ATGGGCTCAGGGACGACC 61.084 66.667 0.00 0.00 40.67 4.79
3502 6098 1.067199 CTTTCTTTCACCGCGCATGC 61.067 55.000 7.91 7.91 37.91 4.06
3634 6445 3.413846 ACACACTGTCAGAGCATCAAT 57.586 42.857 6.91 0.00 37.82 2.57
3635 6446 2.916702 ACACACTGTCAGAGCATCAA 57.083 45.000 6.91 0.00 37.82 2.57
3641 6452 3.657634 AGCACAATACACACTGTCAGAG 58.342 45.455 6.91 0.40 0.00 3.35
3642 6453 3.751479 AGCACAATACACACTGTCAGA 57.249 42.857 6.91 0.00 0.00 3.27
3668 6479 2.172851 ATCCAAGAAACACGCGGTAA 57.827 45.000 12.47 0.00 0.00 2.85
3701 6512 7.676683 TTAGCTAGAAGGAACAAGATGGTAT 57.323 36.000 0.00 0.00 0.00 2.73
3709 6520 7.548075 CGACCTTTTATTAGCTAGAAGGAACAA 59.452 37.037 23.09 0.00 41.98 2.83
3717 6536 5.451520 GGAGCACGACCTTTTATTAGCTAGA 60.452 44.000 0.00 0.00 0.00 2.43
3738 6557 5.297547 TCAATTAATTCGGATCGGAAGGAG 58.702 41.667 19.01 7.69 0.00 3.69
3739 6558 5.284861 TCAATTAATTCGGATCGGAAGGA 57.715 39.130 19.01 8.30 0.00 3.36
3740 6559 4.452455 CCTCAATTAATTCGGATCGGAAGG 59.548 45.833 19.01 9.66 0.00 3.46
3741 6560 4.083802 GCCTCAATTAATTCGGATCGGAAG 60.084 45.833 19.01 6.60 0.00 3.46
3746 6627 5.936956 AGAGATGCCTCAATTAATTCGGATC 59.063 40.000 14.39 12.34 41.87 3.36
3757 6638 9.499479 CTTTACATTGTATAGAGATGCCTCAAT 57.501 33.333 8.16 0.00 41.87 2.57
3762 6643 5.120830 CCGCTTTACATTGTATAGAGATGCC 59.879 44.000 15.75 0.00 0.00 4.40
3766 6647 5.010719 CCCTCCGCTTTACATTGTATAGAGA 59.989 44.000 15.75 10.88 0.00 3.10
3794 6676 7.985476 AGTTTGTATTGCTTACCACATATGTC 58.015 34.615 5.07 0.00 0.00 3.06
3801 6689 6.183360 GGGGATTAGTTTGTATTGCTTACCAC 60.183 42.308 0.00 0.00 0.00 4.16
3802 6690 5.889289 GGGGATTAGTTTGTATTGCTTACCA 59.111 40.000 0.00 0.00 0.00 3.25
3804 6692 6.387041 GGGGGATTAGTTTGTATTGCTTAC 57.613 41.667 0.00 0.00 0.00 2.34
3830 6718 9.856162 TTTGTACTCCCTACTCTTTACATTTTT 57.144 29.630 0.00 0.00 0.00 1.94
3954 6842 1.667724 CTGCAGGAAGCTAATTGGTCG 59.332 52.381 5.57 0.00 45.94 4.79
3958 6846 6.690194 AACTAATCTGCAGGAAGCTAATTG 57.310 37.500 15.13 2.67 45.94 2.32
4220 7120 2.271777 TGGGACGGAGGGAGTATTTTT 58.728 47.619 0.00 0.00 0.00 1.94
4221 7121 1.961133 TGGGACGGAGGGAGTATTTT 58.039 50.000 0.00 0.00 0.00 1.82
4222 7122 2.191981 ATGGGACGGAGGGAGTATTT 57.808 50.000 0.00 0.00 0.00 1.40
4225 7125 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
4227 7127 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
4228 7128 2.779429 TACATTATGGGACGGAGGGA 57.221 50.000 0.00 0.00 0.00 4.20
4229 7129 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
4230 7130 4.040461 ACATCTTACATTATGGGACGGAGG 59.960 45.833 0.00 0.00 0.00 4.30
4231 7131 5.215252 ACATCTTACATTATGGGACGGAG 57.785 43.478 0.00 0.00 0.00 4.63
4232 7132 5.623956 AACATCTTACATTATGGGACGGA 57.376 39.130 0.00 0.00 0.00 4.69
4233 7133 6.693315 AAAACATCTTACATTATGGGACGG 57.307 37.500 0.00 0.00 0.00 4.79
4262 7162 7.211966 AGACGTTTTATGACACTACACTAGT 57.788 36.000 0.00 0.00 40.28 2.57
4263 7163 9.059485 GTAAGACGTTTTATGACACTACACTAG 57.941 37.037 1.49 0.00 0.00 2.57
4264 7164 8.567104 TGTAAGACGTTTTATGACACTACACTA 58.433 33.333 1.49 0.00 0.00 2.74
4265 7165 7.428020 TGTAAGACGTTTTATGACACTACACT 58.572 34.615 1.49 0.00 0.00 3.55
4266 7166 7.627585 TGTAAGACGTTTTATGACACTACAC 57.372 36.000 1.49 0.00 0.00 2.90
4267 7167 8.821147 AATGTAAGACGTTTTATGACACTACA 57.179 30.769 1.49 0.00 0.00 2.74
4270 7170 8.879759 CCATAATGTAAGACGTTTTATGACACT 58.120 33.333 1.49 0.00 33.93 3.55
4271 7171 8.120465 CCCATAATGTAAGACGTTTTATGACAC 58.880 37.037 1.49 0.00 33.93 3.67
4272 7172 8.041919 TCCCATAATGTAAGACGTTTTATGACA 58.958 33.333 1.49 0.00 33.93 3.58
4273 7173 8.333186 GTCCCATAATGTAAGACGTTTTATGAC 58.667 37.037 1.49 0.00 33.93 3.06
4274 7174 7.223193 CGTCCCATAATGTAAGACGTTTTATGA 59.777 37.037 1.49 0.00 43.89 2.15
4275 7175 7.342194 CGTCCCATAATGTAAGACGTTTTATG 58.658 38.462 1.49 0.00 43.89 1.90
4276 7176 6.480981 CCGTCCCATAATGTAAGACGTTTTAT 59.519 38.462 1.49 0.00 46.62 1.40
4277 7177 5.811613 CCGTCCCATAATGTAAGACGTTTTA 59.188 40.000 9.63 0.00 46.62 1.52
4278 7178 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
4279 7179 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
4280 7180 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
4281 7181 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
4283 7183 3.640029 TCCTCCGTCCCATAATGTAAGAC 59.360 47.826 0.00 0.00 0.00 3.01
4284 7184 3.895656 CTCCTCCGTCCCATAATGTAAGA 59.104 47.826 0.00 0.00 0.00 2.10
4285 7185 3.641906 ACTCCTCCGTCCCATAATGTAAG 59.358 47.826 0.00 0.00 0.00 2.34
4286 7186 3.649843 ACTCCTCCGTCCCATAATGTAA 58.350 45.455 0.00 0.00 0.00 2.41
4287 7187 3.323774 ACTCCTCCGTCCCATAATGTA 57.676 47.619 0.00 0.00 0.00 2.29
4288 7188 2.176247 ACTCCTCCGTCCCATAATGT 57.824 50.000 0.00 0.00 0.00 2.71
4289 7189 3.578716 ACATACTCCTCCGTCCCATAATG 59.421 47.826 0.00 0.00 0.00 1.90
4290 7190 3.858135 ACATACTCCTCCGTCCCATAAT 58.142 45.455 0.00 0.00 0.00 1.28
4291 7191 3.323774 ACATACTCCTCCGTCCCATAA 57.676 47.619 0.00 0.00 0.00 1.90
4292 7192 3.323774 AACATACTCCTCCGTCCCATA 57.676 47.619 0.00 0.00 0.00 2.74
4293 7193 2.176247 AACATACTCCTCCGTCCCAT 57.824 50.000 0.00 0.00 0.00 4.00
4294 7194 1.946984 AAACATACTCCTCCGTCCCA 58.053 50.000 0.00 0.00 0.00 4.37
4295 7195 3.007635 CAAAAACATACTCCTCCGTCCC 58.992 50.000 0.00 0.00 0.00 4.46
4296 7196 3.683340 GTCAAAAACATACTCCTCCGTCC 59.317 47.826 0.00 0.00 0.00 4.79
4297 7197 4.312443 TGTCAAAAACATACTCCTCCGTC 58.688 43.478 0.00 0.00 31.20 4.79
4298 7198 4.345859 TGTCAAAAACATACTCCTCCGT 57.654 40.909 0.00 0.00 31.20 4.69
4398 7300 8.564574 ACATTTGTCAAATACACGTAGAAACAT 58.435 29.630 10.46 0.00 38.00 2.71
4399 7301 7.921787 ACATTTGTCAAATACACGTAGAAACA 58.078 30.769 10.46 0.00 38.00 2.83
4405 7307 9.435802 GTGTTAAACATTTGTCAAATACACGTA 57.564 29.630 18.56 4.78 38.00 3.57
4440 7342 7.601856 CAATGCTTGGACATTTTTCCTAGTAA 58.398 34.615 3.16 0.00 39.81 2.24
4455 7357 1.228398 TCCCGTTGCAATGCTTGGA 60.228 52.632 13.42 11.57 0.00 3.53
4456 7358 1.213537 CTCCCGTTGCAATGCTTGG 59.786 57.895 13.42 9.39 0.00 3.61
4458 7360 1.327303 TTTCTCCCGTTGCAATGCTT 58.673 45.000 13.42 0.00 0.00 3.91
4459 7361 1.327303 TTTTCTCCCGTTGCAATGCT 58.673 45.000 13.42 0.00 0.00 3.79
4481 7383 5.728471 AGTCATTCTTCGAGATGTGATGTT 58.272 37.500 5.71 0.00 0.00 2.71
4494 7396 4.391523 GTGAAGGCTCTTGAGTCATTCTTC 59.608 45.833 5.00 4.44 0.00 2.87
4510 7412 2.622436 GACATGTACCTGAGTGAAGGC 58.378 52.381 0.00 0.00 41.46 4.35
4524 7426 9.911788 ATTTCTATGTGAAAATAGAGGACATGT 57.088 29.630 0.00 0.00 46.32 3.21
4540 7442 8.562892 GGATAGACATTGTTGGATTTCTATGTG 58.437 37.037 0.00 0.00 32.14 3.21
4547 7449 5.194537 AGGGAGGATAGACATTGTTGGATTT 59.805 40.000 0.00 0.00 0.00 2.17
4565 7467 1.768077 GGGGAGGATGTGAGGGAGG 60.768 68.421 0.00 0.00 0.00 4.30
4566 7468 1.768077 GGGGGAGGATGTGAGGGAG 60.768 68.421 0.00 0.00 0.00 4.30
4567 7469 2.372688 GGGGGAGGATGTGAGGGA 59.627 66.667 0.00 0.00 0.00 4.20
4700 7602 8.387354 CGTGAGAATACTGTGCATAATAAAACA 58.613 33.333 0.00 0.00 0.00 2.83
4701 7603 8.600625 TCGTGAGAATACTGTGCATAATAAAAC 58.399 33.333 0.00 0.00 37.03 2.43
4702 7604 8.710835 TCGTGAGAATACTGTGCATAATAAAA 57.289 30.769 0.00 0.00 37.03 1.52
4721 7623 8.251750 TGTTTTTAACTTCTGGATATCGTGAG 57.748 34.615 0.00 0.00 0.00 3.51
4722 7624 8.610248 TTGTTTTTAACTTCTGGATATCGTGA 57.390 30.769 0.00 0.00 0.00 4.35
4723 7625 9.672086 TTTTGTTTTTAACTTCTGGATATCGTG 57.328 29.630 0.00 0.00 0.00 4.35
4724 7626 9.893305 CTTTTGTTTTTAACTTCTGGATATCGT 57.107 29.630 0.00 0.00 0.00 3.73
4727 7629 9.914131 GCTCTTTTGTTTTTAACTTCTGGATAT 57.086 29.630 0.00 0.00 0.00 1.63
4728 7630 8.908903 TGCTCTTTTGTTTTTAACTTCTGGATA 58.091 29.630 0.00 0.00 0.00 2.59
4729 7631 7.781056 TGCTCTTTTGTTTTTAACTTCTGGAT 58.219 30.769 0.00 0.00 0.00 3.41
4730 7632 7.164230 TGCTCTTTTGTTTTTAACTTCTGGA 57.836 32.000 0.00 0.00 0.00 3.86
4731 7633 7.826260 TTGCTCTTTTGTTTTTAACTTCTGG 57.174 32.000 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.