Multiple sequence alignment - TraesCS2B01G361000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G361000 chr2B 100.000 8356 0 0 1 8356 514041177 514032822 0.000000e+00 15431.0
1 TraesCS2B01G361000 chr2B 78.926 242 26 7 5620 5859 514035312 514035094 3.140000e-29 141.0
2 TraesCS2B01G361000 chr2B 78.926 242 26 7 5866 6084 514035558 514035319 3.140000e-29 141.0
3 TraesCS2B01G361000 chr2A 96.396 5633 180 12 1170 6795 551242796 551248412 0.000000e+00 9256.0
4 TraesCS2B01G361000 chr2A 92.184 1612 69 25 6793 8356 551248504 551250106 0.000000e+00 2226.0
5 TraesCS2B01G361000 chr2A 88.522 697 63 11 1 682 551219761 551220455 0.000000e+00 828.0
6 TraesCS2B01G361000 chr2A 90.501 379 29 3 680 1056 551227638 551228011 2.100000e-135 494.0
7 TraesCS2B01G361000 chr2A 79.752 242 24 7 5620 5859 551247485 551247703 1.450000e-32 152.0
8 TraesCS2B01G361000 chr2A 97.059 34 0 1 6952 6984 551248810 551248843 1.000000e-03 56.5
9 TraesCS2B01G361000 chr2D 97.017 3922 108 4 2129 6048 437684622 437680708 0.000000e+00 6586.0
10 TraesCS2B01G361000 chr2D 92.346 1398 53 21 884 2246 437686001 437684623 0.000000e+00 1940.0
11 TraesCS2B01G361000 chr2D 97.218 719 16 2 6078 6795 437680708 437679993 0.000000e+00 1214.0
12 TraesCS2B01G361000 chr2D 93.624 643 25 6 6795 7424 437679900 437679261 0.000000e+00 946.0
13 TraesCS2B01G361000 chr2D 91.391 604 23 18 7769 8356 437678735 437678145 0.000000e+00 800.0
14 TraesCS2B01G361000 chr2D 86.735 686 63 13 222 879 437686850 437686165 0.000000e+00 737.0
15 TraesCS2B01G361000 chr2D 90.393 229 21 1 1 228 437869748 437869520 4.900000e-77 300.0
16 TraesCS2B01G361000 chr2D 86.719 128 13 2 5620 5745 437680890 437680765 1.130000e-28 139.0
17 TraesCS2B01G361000 chr2D 84.892 139 17 2 5866 6002 437681136 437681000 4.070000e-28 137.0
18 TraesCS2B01G361000 chr2D 92.683 41 1 2 6945 6984 437679599 437679560 3.260000e-04 58.4
19 TraesCS2B01G361000 chr5D 87.444 669 70 8 233 889 363981692 363982358 0.000000e+00 758.0
20 TraesCS2B01G361000 chr5B 71.522 920 212 40 6 892 489329334 489330236 1.420000e-47 202.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G361000 chr2B 514032822 514041177 8355 True 15431.000000 15431 100.000000 1 8356 1 chr2B.!!$R1 8355
1 TraesCS2B01G361000 chr2A 551242796 551250106 7310 False 2922.625000 9256 91.347750 1170 8356 4 chr2A.!!$F3 7186
2 TraesCS2B01G361000 chr2A 551219761 551220455 694 False 828.000000 828 88.522000 1 682 1 chr2A.!!$F1 681
3 TraesCS2B01G361000 chr2D 437678145 437686850 8705 True 1395.266667 6586 91.402778 222 8356 9 chr2D.!!$R2 8134
4 TraesCS2B01G361000 chr5D 363981692 363982358 666 False 758.000000 758 87.444000 233 889 1 chr5D.!!$F1 656
5 TraesCS2B01G361000 chr5B 489329334 489330236 902 False 202.000000 202 71.522000 6 892 1 chr5B.!!$F1 886

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
862 909 0.029433 TGTACGCTGCTGCTAGATCG 59.971 55.0 14.03 0.0 36.97 3.69 F
1462 1704 1.111116 TGTTCCTCGACACCGACCTT 61.111 55.0 0.00 0.0 40.30 3.50 F
3136 3499 0.603569 TGGAGAGGAGTTTCTCGCAC 59.396 55.0 0.00 0.0 43.64 5.34 F
3209 3572 0.893727 GGTGACAAACAAGCGGGGAT 60.894 55.0 0.00 0.0 0.00 3.85 F
4181 4544 0.323725 AATGTGCAGCGAGGGGATTT 60.324 50.0 0.00 0.0 0.00 2.17 F
4477 4840 0.108615 CACTACAGGTGGAAGCTCGG 60.109 60.0 0.00 0.0 44.61 4.63 F
5862 6225 1.090052 GTATGCCGCAACAGGAGACC 61.090 60.0 0.00 0.0 0.00 3.85 F
6535 6898 0.101759 CATGGATGAAAAGGCTGGCG 59.898 55.0 0.00 0.0 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1882 2124 1.880271 CACTATGCTCCCAGCTGATG 58.120 55.000 17.39 6.04 42.97 3.07 R
3198 3561 0.546598 CTTCCCTTATCCCCGCTTGT 59.453 55.000 0.00 0.00 0.00 3.16 R
4156 4519 0.097674 CCTCGCTGCACATTACTTGC 59.902 55.000 0.00 0.00 40.63 4.01 R
4293 4656 1.822990 ACCTGAGCATTTGCAATGGAG 59.177 47.619 0.00 0.00 45.16 3.86 R
5291 5654 0.030705 AGGAATAGCTGCTCCCTCCA 60.031 55.000 20.33 0.00 31.50 3.86 R
6447 6810 0.317436 CGCTAGCGCCTCTCTTACTG 60.317 60.000 26.07 0.00 0.00 2.74 R
7158 7621 0.514691 GGTCTCAGCAAGCTTCAACG 59.485 55.000 0.00 0.00 0.00 4.10 R
8169 8969 0.250727 TTTGCTAAACCGCCTGCTCT 60.251 50.000 0.00 0.00 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.161404 TGGTACAATTCCTCACATGATATAGC 58.839 38.462 0.00 0.00 31.92 2.97
119 121 5.521372 AGCTCAAAATGACTTGACTTTTTGC 59.479 36.000 14.22 7.95 40.91 3.68
143 145 4.790790 AGGAAATCTTGTAGTCCTTCCCAT 59.209 41.667 0.00 0.00 37.17 4.00
159 161 1.134487 CATGTTTACGTGGCCGCAG 59.866 57.895 18.18 11.69 37.70 5.18
160 162 1.302192 ATGTTTACGTGGCCGCAGT 60.302 52.632 18.18 16.90 37.70 4.40
161 163 1.573829 ATGTTTACGTGGCCGCAGTG 61.574 55.000 18.18 2.20 37.70 3.66
196 199 4.706962 AGGAACAAAACTTGAGCTTTCAGT 59.293 37.500 0.00 0.00 0.00 3.41
260 277 1.882912 TGGAGCATGTTGTGTGAGTC 58.117 50.000 0.00 0.00 0.00 3.36
284 301 1.830486 AGGATCATGCCTCCCTTCAT 58.170 50.000 9.75 0.00 30.76 2.57
309 326 1.901591 ACCACATCCAGAAAGCACAG 58.098 50.000 0.00 0.00 0.00 3.66
315 332 2.859165 TCCAGAAAGCACAGTTAGGG 57.141 50.000 0.00 0.00 0.00 3.53
323 340 5.902431 AGAAAGCACAGTTAGGGATATCTCT 59.098 40.000 10.66 10.66 0.00 3.10
354 371 7.648039 ACAGGTCCTATTATATTCTCGGATC 57.352 40.000 0.00 0.00 0.00 3.36
457 476 2.033049 GCTCAACTTCGTATCTCGGCTA 59.967 50.000 0.00 0.00 40.32 3.93
513 548 1.717645 GCTTTCAGTTTGATGCTTGCG 59.282 47.619 0.00 0.00 0.00 4.85
514 549 1.717645 CTTTCAGTTTGATGCTTGCGC 59.282 47.619 0.00 0.00 0.00 6.09
599 642 3.848019 CGGCAACATTCAAAATCTCTTCG 59.152 43.478 0.00 0.00 0.00 3.79
612 655 2.178521 CTTCGTCACTCCGGGTCG 59.821 66.667 0.00 0.00 0.00 4.79
670 716 2.485426 TCTTCAGCCTTCAATGCTTTCG 59.515 45.455 0.00 0.00 36.81 3.46
715 761 5.046529 GTCAGAATTATCGAGCACATCACT 58.953 41.667 0.00 0.00 0.00 3.41
727 773 2.680805 GCACATCACTAGGCCAAGCTAA 60.681 50.000 5.01 0.00 0.00 3.09
741 787 5.183140 GGCCAAGCTAACACTAAAGATTCAA 59.817 40.000 0.00 0.00 0.00 2.69
835 881 1.093972 TCCTATGTTGCAATGCACGG 58.906 50.000 7.72 3.93 38.71 4.94
862 909 0.029433 TGTACGCTGCTGCTAGATCG 59.971 55.000 14.03 0.00 36.97 3.69
930 1136 4.466370 ACATGCTACTAGTAGTTGGCAAGA 59.534 41.667 26.76 11.60 38.48 3.02
932 1138 5.677319 TGCTACTAGTAGTTGGCAAGAAT 57.323 39.130 26.76 0.00 34.58 2.40
935 1141 5.524281 GCTACTAGTAGTTGGCAAGAATTCC 59.476 44.000 26.76 5.44 35.65 3.01
940 1146 6.731292 AGTAGTTGGCAAGAATTCCTTTTT 57.269 33.333 0.00 0.00 31.42 1.94
979 1185 5.858381 TCTGCAAGCTCCACCTTATATAAG 58.142 41.667 14.56 14.56 0.00 1.73
1060 1272 8.997621 TCTCTTTGTAGTTAATACATGTGGTC 57.002 34.615 9.11 0.00 43.87 4.02
1064 1276 7.490657 TTGTAGTTAATACATGTGGTCCTCT 57.509 36.000 9.11 2.89 43.87 3.69
1078 1312 7.214467 TGTGGTCCTCTTCAAATGTAAATTC 57.786 36.000 0.00 0.00 0.00 2.17
1119 1353 8.290325 GGAAACTCTTTGTGGTGTAATAGAAAG 58.710 37.037 0.00 0.00 0.00 2.62
1139 1373 4.519906 AGGACCTTCTTGTGAAAAAGGA 57.480 40.909 7.34 0.00 41.78 3.36
1285 1527 2.105821 TGGCCTATAACCTAAAGCGCAT 59.894 45.455 11.47 0.00 0.00 4.73
1462 1704 1.111116 TGTTCCTCGACACCGACCTT 61.111 55.000 0.00 0.00 40.30 3.50
1588 1830 3.810386 GGGAGAACTTTATCTGATTCGCC 59.190 47.826 0.00 0.00 39.50 5.54
1596 1838 2.119801 ATCTGATTCGCCTGTTTGCT 57.880 45.000 0.00 0.00 0.00 3.91
1670 1912 2.087009 CGTCGCCGTCAAGTCCTTC 61.087 63.158 0.00 0.00 0.00 3.46
1691 1933 3.325716 TCCAGGTTCTAGTTTACGGCTTT 59.674 43.478 0.00 0.00 0.00 3.51
1700 1942 5.873164 TCTAGTTTACGGCTTTGATCCTTTC 59.127 40.000 0.00 0.00 0.00 2.62
1826 2068 4.379652 GTTTCGGTGTAGGTTTTCCAGTA 58.620 43.478 0.00 0.00 43.73 2.74
1852 2094 7.994425 TTTGTTAGGTGATCAGATGCTTTAA 57.006 32.000 0.00 0.00 0.00 1.52
1882 2124 5.077424 CACGTTTTACTTAATTGGCGTCTC 58.923 41.667 0.00 0.00 0.00 3.36
1942 2184 3.023832 CAATAAACCCTGCCTCCGAATT 58.976 45.455 0.00 0.00 0.00 2.17
1957 2199 5.395324 CCTCCGAATTAGTGTGTATGGTTCT 60.395 44.000 0.00 0.00 0.00 3.01
1982 2224 1.202698 ACGCCTAATGGAGATTGAGCC 60.203 52.381 0.00 0.00 36.60 4.70
2037 2279 9.841295 AAATGCAATAGATGGCTATCAAAATTT 57.159 25.926 13.04 6.59 36.31 1.82
2247 2609 2.180159 ATTTCCGCCAGGTGCTACGT 62.180 55.000 0.00 0.00 39.05 3.57
2284 2646 1.411977 ACCTCTCTGATTCGATGGCAG 59.588 52.381 0.00 0.00 0.00 4.85
2339 2701 2.734492 GCTTTCTGCATGTCAAGATGGC 60.734 50.000 0.00 0.50 42.31 4.40
2373 2735 2.757868 GGACTCACACTACTGCAGAGAT 59.242 50.000 23.35 0.00 30.82 2.75
2457 2819 2.512692 TGCCTGCAACAATATCAGGT 57.487 45.000 8.99 0.00 46.82 4.00
2530 2892 9.499479 TGGCATTTGAATTGTATTAATTGTTGT 57.501 25.926 0.00 0.00 0.00 3.32
2659 3021 4.333372 GTGTTTCTGAACCGAACCTTTGTA 59.667 41.667 0.00 0.00 34.80 2.41
2740 3102 2.951726 TCTTTGACATGCTCGAGTCAG 58.048 47.619 15.13 6.45 44.65 3.51
2741 3103 2.558359 TCTTTGACATGCTCGAGTCAGA 59.442 45.455 15.13 5.03 44.65 3.27
2774 3136 7.974482 TCTCATGCATATGATTAACCTCTTG 57.026 36.000 6.97 0.00 42.19 3.02
2776 3138 7.443272 TCTCATGCATATGATTAACCTCTTGTG 59.557 37.037 6.97 0.00 42.19 3.33
2799 3162 8.841300 TGTGAGTATGCATGTAAGTTGTAAAAA 58.159 29.630 10.16 0.00 0.00 1.94
2832 3195 4.379186 CCGTAGTTGTATCGTCTGTTGAGT 60.379 45.833 0.00 0.00 0.00 3.41
3129 3492 1.068121 CCCTGGTTGGAGAGGAGTTT 58.932 55.000 0.00 0.00 38.35 2.66
3136 3499 0.603569 TGGAGAGGAGTTTCTCGCAC 59.396 55.000 0.00 0.00 43.64 5.34
3198 3561 3.157881 TGGTGTTGTTTCTGGTGACAAA 58.842 40.909 0.00 0.00 42.06 2.83
3203 3566 3.502191 TGTTTCTGGTGACAAACAAGC 57.498 42.857 0.00 0.00 37.94 4.01
3209 3572 0.893727 GGTGACAAACAAGCGGGGAT 60.894 55.000 0.00 0.00 0.00 3.85
3216 3579 0.996583 AACAAGCGGGGATAAGGGAA 59.003 50.000 0.00 0.00 0.00 3.97
3222 3585 1.209621 CGGGGATAAGGGAAGGAACA 58.790 55.000 0.00 0.00 0.00 3.18
3231 3594 1.064825 GGGAAGGAACAGTGGGAGAA 58.935 55.000 0.00 0.00 0.00 2.87
3286 3649 1.657751 GCGCAAAAGGGCTAGAAGGG 61.658 60.000 0.30 0.00 0.00 3.95
3457 3820 3.698040 ACATGGAAATGCACAAGAGGATC 59.302 43.478 0.00 0.00 0.00 3.36
3478 3841 4.785301 TCTAATCCAGCCTGAAAATCCAG 58.215 43.478 0.00 0.00 0.00 3.86
3536 3899 3.260380 CAGTCAGTCTCTCCCAAAGATGT 59.740 47.826 0.00 0.00 32.19 3.06
3537 3900 3.906846 AGTCAGTCTCTCCCAAAGATGTT 59.093 43.478 0.00 0.00 32.19 2.71
3538 3901 4.349342 AGTCAGTCTCTCCCAAAGATGTTT 59.651 41.667 0.00 0.00 32.19 2.83
3539 3902 4.693095 GTCAGTCTCTCCCAAAGATGTTTC 59.307 45.833 0.00 0.00 32.19 2.78
3540 3903 4.594920 TCAGTCTCTCCCAAAGATGTTTCT 59.405 41.667 0.00 0.00 32.19 2.52
3541 3904 5.072329 TCAGTCTCTCCCAAAGATGTTTCTT 59.928 40.000 0.00 0.00 44.20 2.52
3719 4082 4.035324 GCATCTTCCATCATCACAACTCAG 59.965 45.833 0.00 0.00 0.00 3.35
3788 4151 4.814234 AGTTGCTGACAAAAGTAACATCGA 59.186 37.500 7.70 0.00 43.01 3.59
3806 4169 8.539770 AACATCGATATTGTACATGAAGGATC 57.460 34.615 0.00 0.00 0.00 3.36
3815 4178 6.312141 TGTACATGAAGGATCTGGAAATCA 57.688 37.500 0.00 0.00 0.00 2.57
3976 4339 5.628797 TGTCTTGGATATGGCAGATACAA 57.371 39.130 18.14 18.14 0.00 2.41
4026 4389 4.644685 TGCCAGGAATCAAATAAGGTTAGC 59.355 41.667 0.00 0.00 0.00 3.09
4090 4453 3.322254 CCAGTCTGGGTATAGCGAGAAAT 59.678 47.826 16.85 7.48 32.67 2.17
4147 4510 7.364320 GGGAGATCTTAGATGACCCTTATAAGC 60.364 44.444 19.23 0.00 33.79 3.09
4156 4519 1.148310 CCCTTATAAGCGGCACATCG 58.852 55.000 6.99 0.00 0.00 3.84
4181 4544 0.323725 AATGTGCAGCGAGGGGATTT 60.324 50.000 0.00 0.00 0.00 2.17
4293 4656 4.989279 ATGTATGACAAAACCATCTGGC 57.011 40.909 0.00 0.00 39.32 4.85
4457 4820 5.634118 TCCTTTGACAAAATCATCTGGACT 58.366 37.500 1.62 0.00 37.11 3.85
4477 4840 0.108615 CACTACAGGTGGAAGCTCGG 60.109 60.000 0.00 0.00 44.61 4.63
4494 4857 3.002791 CTCGGCACAACATACAAGTGAT 58.997 45.455 0.00 0.00 35.33 3.06
4697 5060 1.278127 TGTTAGTGCAGCCTTACCTCC 59.722 52.381 0.00 0.00 0.00 4.30
4824 5187 8.510505 AGAAAGAAGACTTCATTAAAGCATGTC 58.489 33.333 17.34 0.00 38.67 3.06
4947 5310 5.184671 GCTTCTGGAAGGTTCTTCAATTGAT 59.815 40.000 9.40 0.00 38.80 2.57
5140 5503 6.658188 ATATAGTAGGAGCTCCAACAGAAC 57.342 41.667 33.90 19.69 38.89 3.01
5286 5649 4.025040 TGCAGATTTGATGAACTCCAGT 57.975 40.909 0.00 0.00 0.00 4.00
5291 5654 3.777106 TTTGATGAACTCCAGTGCTCT 57.223 42.857 0.00 0.00 0.00 4.09
5344 5707 3.578688 GGTGCTGTTGAACCAAATGATC 58.421 45.455 0.00 0.00 41.71 2.92
5405 5768 1.474330 GACCATTTTAGCCCCAGTGG 58.526 55.000 0.63 0.63 37.09 4.00
5558 5921 4.600547 TCTGCCAGAATCCCATCTTCATAT 59.399 41.667 0.00 0.00 0.00 1.78
5712 6075 1.810755 GATTTGGTCAAACCCGAGTCC 59.189 52.381 0.00 0.00 37.50 3.85
5829 6192 9.768662 AATGCAAAAGAGAACAGTGATAAAATT 57.231 25.926 0.00 0.00 0.00 1.82
5862 6225 1.090052 GTATGCCGCAACAGGAGACC 61.090 60.000 0.00 0.00 0.00 3.85
5943 6306 8.237811 AGAAGAGCAAAAGAAAACAGGATTTA 57.762 30.769 0.00 0.00 0.00 1.40
5965 6328 3.815401 AGTCAAACCCGAGTCTCAAAATG 59.185 43.478 0.00 0.00 0.00 2.32
5967 6330 2.270352 AACCCGAGTCTCAAAATGCA 57.730 45.000 0.00 0.00 0.00 3.96
6023 6386 2.286294 CGCAGAAAGGAAGAATGGATCG 59.714 50.000 0.00 0.00 0.00 3.69
6052 6415 7.599998 GCAATGCAAAAGAGAAGAAGGATAAAA 59.400 33.333 0.00 0.00 0.00 1.52
6188 6551 1.747355 CATTGAGAAGGACCATGCACC 59.253 52.381 0.00 0.00 0.00 5.01
6281 6644 1.797320 ATTGATGGGAGGGCAAATGG 58.203 50.000 0.00 0.00 0.00 3.16
6463 6826 2.723322 TACCAGTAAGAGAGGCGCTA 57.277 50.000 7.64 0.00 0.00 4.26
6521 6884 5.814481 TGATGAACTATTGAACACCATGGA 58.186 37.500 21.47 0.00 0.00 3.41
6535 6898 0.101759 CATGGATGAAAAGGCTGGCG 59.898 55.000 0.00 0.00 0.00 5.69
6536 6899 0.323725 ATGGATGAAAAGGCTGGCGT 60.324 50.000 0.00 0.00 0.00 5.68
6813 7271 6.354938 ACACTGACTTTGCATCTGATGATAT 58.645 36.000 21.30 1.34 0.00 1.63
6815 7273 6.260271 CACTGACTTTGCATCTGATGATATGT 59.740 38.462 21.30 14.10 0.00 2.29
6816 7274 6.482641 ACTGACTTTGCATCTGATGATATGTC 59.517 38.462 21.30 20.30 0.00 3.06
6817 7275 5.761726 TGACTTTGCATCTGATGATATGTCC 59.238 40.000 21.30 2.34 0.00 4.02
6818 7276 5.687780 ACTTTGCATCTGATGATATGTCCA 58.312 37.500 21.30 4.94 0.00 4.02
6819 7277 5.530171 ACTTTGCATCTGATGATATGTCCAC 59.470 40.000 21.30 0.94 0.00 4.02
6820 7278 4.968971 TGCATCTGATGATATGTCCACT 57.031 40.909 21.30 0.00 0.00 4.00
6821 7279 6.423776 TTGCATCTGATGATATGTCCACTA 57.576 37.500 21.30 0.00 0.00 2.74
7104 7567 5.645624 CATGCACGGTAACATTTTGGATAA 58.354 37.500 0.00 0.00 0.00 1.75
7120 7583 8.635765 TTTTGGATAAAACTGCTTGACTAGAT 57.364 30.769 0.00 0.00 31.13 1.98
7131 7594 5.907207 TGCTTGACTAGATGAACATAGTCC 58.093 41.667 12.31 2.54 44.78 3.85
7146 7609 4.094442 ACATAGTCCGATTTTCGCCTTTTC 59.906 41.667 0.00 0.00 38.82 2.29
7158 7621 1.804748 CGCCTTTTCCTGGTCTACAAC 59.195 52.381 0.00 0.00 0.00 3.32
7229 7693 3.257873 CACAGAGGAGTGACATCAACTCT 59.742 47.826 3.80 6.31 42.05 3.24
7447 7936 2.910688 GTGAAGTTCACACCTCCAGA 57.089 50.000 27.37 0.00 46.22 3.86
7471 7960 2.684001 TTGAGTTTGTGGTCGTGACT 57.316 45.000 0.00 0.00 0.00 3.41
7575 8344 4.087510 GTGGAACAAATTAGCCGGTAAC 57.912 45.455 1.90 0.00 44.16 2.50
7582 8351 6.334102 ACAAATTAGCCGGTAACAAATTCA 57.666 33.333 1.90 0.00 0.00 2.57
7640 8418 7.063898 CGTGATATCAGAGACAAGTTCAAATGT 59.936 37.037 5.42 0.00 0.00 2.71
7642 8420 9.288576 TGATATCAGAGACAAGTTCAAATGTTT 57.711 29.630 0.00 0.00 0.00 2.83
7696 8479 3.558418 ACATGTCACGTGGTAGTTCAAAC 59.442 43.478 17.00 3.40 0.00 2.93
7809 8592 2.924290 CTCAAGCTACACCTAAGAACGC 59.076 50.000 0.00 0.00 0.00 4.84
7866 8664 3.230976 TGGTCTCTCACTAGCTTGTCAA 58.769 45.455 0.00 0.00 0.00 3.18
7871 8669 4.154375 TCTCTCACTAGCTTGTCAACTACG 59.846 45.833 0.00 0.00 0.00 3.51
7872 8670 3.819337 TCTCACTAGCTTGTCAACTACGT 59.181 43.478 0.00 0.00 0.00 3.57
7873 8671 4.999311 TCTCACTAGCTTGTCAACTACGTA 59.001 41.667 0.00 0.00 0.00 3.57
7874 8672 5.039480 TCACTAGCTTGTCAACTACGTAC 57.961 43.478 0.00 0.00 0.00 3.67
7883 8681 6.614999 GCTTGTCAACTACGTACACAATACAC 60.615 42.308 0.00 0.00 0.00 2.90
7884 8682 5.829829 TGTCAACTACGTACACAATACACA 58.170 37.500 0.00 0.00 0.00 3.72
7885 8683 5.916320 TGTCAACTACGTACACAATACACAG 59.084 40.000 0.00 0.00 0.00 3.66
7896 8694 3.067106 ACAATACACAGCCAAAGACTCG 58.933 45.455 0.00 0.00 0.00 4.18
7904 8704 1.291132 GCCAAAGACTCGGCTATCAC 58.709 55.000 8.32 0.00 45.29 3.06
8040 8840 2.165643 TTGGGATCCATTGGCAGGCA 62.166 55.000 15.23 0.00 31.53 4.75
8041 8841 1.381599 GGGATCCATTGGCAGGCAA 60.382 57.895 15.23 12.53 0.00 4.52
8075 8875 1.137825 CCTCTCGAGCTCCGACAAC 59.862 63.158 7.81 0.00 43.23 3.32
8102 8902 3.247648 ACTTCACAAGAACATCGAAACGG 59.752 43.478 0.00 0.00 0.00 4.44
8169 8969 7.926674 TGCAATCTTTGATGATACAGAGAAA 57.073 32.000 0.00 0.00 35.31 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.002468 TGTTGAGAAGAAAGCAAGCGC 60.002 47.619 0.00 0.00 38.99 5.92
25 26 3.486584 GATGTTGAGAAGAAAGCAAGCG 58.513 45.455 0.00 0.00 0.00 4.68
119 121 4.019321 TGGGAAGGACTACAAGATTTCCTG 60.019 45.833 0.00 0.00 38.55 3.86
143 145 2.109387 ACTGCGGCCACGTAAACA 59.891 55.556 2.24 0.00 43.45 2.83
159 161 1.269517 TGTTCCTTGCAAATTCGCCAC 60.270 47.619 0.00 0.00 0.00 5.01
160 162 1.035923 TGTTCCTTGCAAATTCGCCA 58.964 45.000 0.00 0.00 0.00 5.69
161 163 2.147436 TTGTTCCTTGCAAATTCGCC 57.853 45.000 0.00 0.00 0.00 5.54
163 165 5.290643 TCAAGTTTTGTTCCTTGCAAATTCG 59.709 36.000 0.00 0.00 38.33 3.34
164 166 6.660887 TCAAGTTTTGTTCCTTGCAAATTC 57.339 33.333 0.00 0.00 38.33 2.17
196 199 6.630131 TCTATAATACTGACATGGGAAGGGA 58.370 40.000 0.00 0.00 0.00 4.20
256 273 0.396060 GGCATGATCCTCCTGGACTC 59.604 60.000 0.00 0.00 46.51 3.36
309 326 9.145442 ACCTGTAAAACTAGAGATATCCCTAAC 57.855 37.037 0.00 0.00 0.00 2.34
350 367 4.302559 ACTACAAAACCAAGAGGGATCC 57.697 45.455 1.92 1.92 41.15 3.36
354 371 2.812011 CCGAACTACAAAACCAAGAGGG 59.188 50.000 0.00 0.00 44.81 4.30
429 446 3.195610 AGATACGAAGTTGAGCATGTCCA 59.804 43.478 0.00 0.00 37.78 4.02
599 642 4.436998 CCAGCGACCCGGAGTGAC 62.437 72.222 0.73 0.00 0.00 3.67
670 716 4.841246 ACTCCTATGAATGTGGTAGATCCC 59.159 45.833 0.00 0.00 34.77 3.85
715 761 5.693769 ATCTTTAGTGTTAGCTTGGCCTA 57.306 39.130 3.32 0.00 0.00 3.93
754 800 6.230472 TGCTAGAAGCTAAACATCTGAAACA 58.770 36.000 0.00 0.00 42.97 2.83
804 850 3.193267 GCAACATAGGACCATCTGCAAAA 59.807 43.478 0.00 0.00 0.00 2.44
835 881 3.505449 GCAGCAGCGTACATATACAAC 57.495 47.619 0.00 0.00 0.00 3.32
902 1108 4.503910 CAACTACTAGTAGCATGTTGCCA 58.496 43.478 26.54 0.00 46.52 4.92
914 1120 5.763876 AGGAATTCTTGCCAACTACTAGT 57.236 39.130 5.23 0.00 0.00 2.57
916 1122 7.504238 TGAAAAAGGAATTCTTGCCAACTACTA 59.496 33.333 5.23 0.00 35.55 1.82
917 1123 6.323739 TGAAAAAGGAATTCTTGCCAACTACT 59.676 34.615 5.23 0.00 35.55 2.57
918 1124 6.420903 GTGAAAAAGGAATTCTTGCCAACTAC 59.579 38.462 5.23 0.00 35.55 2.73
959 1165 6.944234 AAACTTATATAAGGTGGAGCTTGC 57.056 37.500 23.24 0.00 37.62 4.01
989 1195 6.157211 ACATGCTTATATAAGGTGTACTCGC 58.843 40.000 21.30 7.43 33.95 5.03
990 1196 7.368059 TGACATGCTTATATAAGGTGTACTCG 58.632 38.462 21.30 5.22 33.95 4.18
1052 1264 6.573664 TTTACATTTGAAGAGGACCACATG 57.426 37.500 0.00 0.00 0.00 3.21
1056 1268 5.414454 CCGAATTTACATTTGAAGAGGACCA 59.586 40.000 0.00 0.00 0.00 4.02
1057 1269 5.646360 TCCGAATTTACATTTGAAGAGGACC 59.354 40.000 0.00 0.00 0.00 4.46
1060 1272 6.743575 ACTCCGAATTTACATTTGAAGAGG 57.256 37.500 0.00 0.00 0.00 3.69
1064 1276 8.557864 TCGTTTAACTCCGAATTTACATTTGAA 58.442 29.630 0.00 0.00 0.00 2.69
1078 1312 3.910648 AGTTTCCTCTCGTTTAACTCCG 58.089 45.455 0.00 0.00 0.00 4.63
1115 1349 5.359860 TCCTTTTTCACAAGAAGGTCCTTTC 59.640 40.000 5.36 0.00 40.60 2.62
1119 1353 3.951680 TGTCCTTTTTCACAAGAAGGTCC 59.048 43.478 5.68 0.00 40.60 4.46
1188 1422 5.791336 AAGAGGCGGAAATTTTCTTTCTT 57.209 34.783 8.93 9.47 0.00 2.52
1190 1424 8.534333 AAATAAAGAGGCGGAAATTTTCTTTC 57.466 30.769 14.90 2.12 38.58 2.62
1285 1527 3.596214 GAGAAGTGGCGTATTTTGAGGA 58.404 45.455 0.00 0.00 0.00 3.71
1533 1775 4.179599 GGAGGAGGGGAGGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
1534 1776 1.083363 ATAGGAGGAGGGGAGGGGAG 61.083 65.000 0.00 0.00 0.00 4.30
1535 1777 1.010351 ATAGGAGGAGGGGAGGGGA 59.990 63.158 0.00 0.00 0.00 4.81
1536 1778 1.380280 TGATAGGAGGAGGGGAGGGG 61.380 65.000 0.00 0.00 0.00 4.79
1537 1779 0.568192 TTGATAGGAGGAGGGGAGGG 59.432 60.000 0.00 0.00 0.00 4.30
1574 1816 4.009675 AGCAAACAGGCGAATCAGATAAA 58.990 39.130 0.00 0.00 39.27 1.40
1670 1912 3.329929 AAGCCGTAAACTAGAACCTGG 57.670 47.619 0.00 0.00 0.00 4.45
1691 1933 7.773489 TCATGTAAAAACATGGAAAGGATCA 57.227 32.000 16.20 0.00 45.43 2.92
1723 1965 6.492087 GGAGCTTACTACTCTAACATCCAGAT 59.508 42.308 0.00 0.00 34.46 2.90
1736 1978 4.079443 AGAGACCATGAGGAGCTTACTACT 60.079 45.833 0.00 0.00 41.07 2.57
1826 2068 7.472334 AAAGCATCTGATCACCTAACAAAAT 57.528 32.000 0.00 0.00 0.00 1.82
1852 2094 6.681865 GCCAATTAAGTAAAACGTGCCCATAT 60.682 38.462 0.00 0.00 0.00 1.78
1882 2124 1.880271 CACTATGCTCCCAGCTGATG 58.120 55.000 17.39 6.04 42.97 3.07
1942 2184 4.449743 GCGTTTGAAGAACCATACACACTA 59.550 41.667 0.00 0.00 0.00 2.74
1957 2199 4.584874 TCAATCTCCATTAGGCGTTTGAA 58.415 39.130 0.00 0.00 36.12 2.69
2247 2609 1.989586 AGGTGGTACATTGCACCCTTA 59.010 47.619 13.51 0.00 44.52 2.69
2284 2646 3.319122 ACTTTGGAAAATGCACTCCTCAC 59.681 43.478 11.50 0.00 32.51 3.51
2339 2701 2.356313 AGTCCGTCGCAACTGCTG 60.356 61.111 0.00 0.00 39.32 4.41
2373 2735 4.823364 ACTTGATCTCCCTCTATCCTCA 57.177 45.455 0.00 0.00 0.00 3.86
2457 2819 3.763360 CCAGCATTTGAGGATTTACACCA 59.237 43.478 0.00 0.00 0.00 4.17
2530 2892 4.641396 ACAGTAGCAATGCTAACTTGACA 58.359 39.130 17.34 0.00 43.07 3.58
2634 2996 2.993937 AGGTTCGGTTCAGAAACACAA 58.006 42.857 0.00 0.00 40.14 3.33
2647 3009 5.065218 CAGGAGATTTGATACAAAGGTTCGG 59.935 44.000 0.00 0.00 0.00 4.30
2659 3021 5.698741 TGACCATACACAGGAGATTTGAT 57.301 39.130 0.00 0.00 0.00 2.57
2774 3136 9.840427 ATTTTTACAACTTACATGCATACTCAC 57.160 29.630 0.00 0.00 0.00 3.51
2799 3162 5.220381 CGATACAACTACGGACAGCATAAT 58.780 41.667 0.00 0.00 0.00 1.28
3129 3492 1.223187 GGTTTTCCTTTCGTGCGAGA 58.777 50.000 0.00 0.00 36.94 4.04
3198 3561 0.546598 CTTCCCTTATCCCCGCTTGT 59.453 55.000 0.00 0.00 0.00 3.16
3203 3566 1.141053 CTGTTCCTTCCCTTATCCCCG 59.859 57.143 0.00 0.00 0.00 5.73
3209 3572 2.158066 TCTCCCACTGTTCCTTCCCTTA 60.158 50.000 0.00 0.00 0.00 2.69
3216 3579 2.408565 TGAAGTTCTCCCACTGTTCCT 58.591 47.619 4.17 0.00 0.00 3.36
3222 3585 1.701847 AGTGCATGAAGTTCTCCCACT 59.298 47.619 13.46 13.46 0.00 4.00
3231 3594 2.422519 GGGATCATCCAGTGCATGAAGT 60.423 50.000 5.89 0.00 38.64 3.01
3286 3649 3.423645 GCTGACGTGTTAACAGAATCAGC 60.424 47.826 32.07 32.07 43.12 4.26
3457 3820 4.530875 ACTGGATTTTCAGGCTGGATTAG 58.469 43.478 15.73 10.89 38.98 1.73
3458 3821 4.018506 TGACTGGATTTTCAGGCTGGATTA 60.019 41.667 15.73 0.00 43.04 1.75
3478 3841 8.246871 CCTTTTCTTATTCTTTCCAGGAATGAC 58.753 37.037 15.82 0.00 35.40 3.06
3523 3886 3.397618 TGGGAAGAAACATCTTTGGGAGA 59.602 43.478 0.00 0.00 39.13 3.71
3536 3899 6.384305 TGGTTTTGTTATTTCCTGGGAAGAAA 59.616 34.615 0.00 0.00 37.61 2.52
3537 3900 5.900123 TGGTTTTGTTATTTCCTGGGAAGAA 59.100 36.000 2.19 0.00 35.38 2.52
3538 3901 5.459505 TGGTTTTGTTATTTCCTGGGAAGA 58.540 37.500 2.19 0.00 35.38 2.87
3539 3902 5.799827 TGGTTTTGTTATTTCCTGGGAAG 57.200 39.130 2.19 0.00 35.38 3.46
3540 3903 5.841237 TGATGGTTTTGTTATTTCCTGGGAA 59.159 36.000 0.00 0.00 0.00 3.97
3541 3904 5.398236 TGATGGTTTTGTTATTTCCTGGGA 58.602 37.500 0.00 0.00 0.00 4.37
3581 3944 3.511540 GCCTCCATCTAAAGCTTTTGGTT 59.488 43.478 22.05 8.98 42.58 3.67
3591 3954 1.915489 TGAAGCAGGCCTCCATCTAAA 59.085 47.619 0.00 0.00 0.00 1.85
3641 4004 8.429493 TCTGCTAGTCATTTCAACATTATCTG 57.571 34.615 0.00 0.00 0.00 2.90
3719 4082 0.400594 ACCCAACTGGCTTCCACTAC 59.599 55.000 0.00 0.00 37.83 2.73
3788 4151 9.512588 GATTTCCAGATCCTTCATGTACAATAT 57.487 33.333 0.00 0.00 0.00 1.28
3806 4169 2.089980 CTCCAACTGCCTGATTTCCAG 58.910 52.381 0.00 0.00 42.55 3.86
3815 4178 0.472734 ACTGGTCTCTCCAACTGCCT 60.473 55.000 0.00 0.00 46.59 4.75
3859 4222 3.976942 CCTTCTGCAATTGTTTCTTCACG 59.023 43.478 7.40 0.00 0.00 4.35
3976 4339 7.361457 TCTTCTCATGAGAAATATTACCGGT 57.639 36.000 32.18 13.98 45.75 5.28
4026 4389 3.474600 CATGGAAGATAGGCCAACAGAG 58.525 50.000 5.01 0.00 37.78 3.35
4090 4453 6.737720 AGACACTATATCTGATTTGGCTGA 57.262 37.500 0.00 0.00 0.00 4.26
4125 4488 6.334202 CCGCTTATAAGGGTCATCTAAGATC 58.666 44.000 23.45 0.00 37.27 2.75
4132 4495 2.143925 GTGCCGCTTATAAGGGTCATC 58.856 52.381 23.45 11.30 37.27 2.92
4147 4510 0.726827 ACATTACTTGCGATGTGCCG 59.273 50.000 0.00 0.00 45.60 5.69
4156 4519 0.097674 CCTCGCTGCACATTACTTGC 59.902 55.000 0.00 0.00 40.63 4.01
4273 4636 4.009675 GAGCCAGATGGTTTTGTCATACA 58.990 43.478 0.00 0.00 37.57 2.29
4276 4639 2.225091 TGGAGCCAGATGGTTTTGTCAT 60.225 45.455 0.00 0.00 37.57 3.06
4293 4656 1.822990 ACCTGAGCATTTGCAATGGAG 59.177 47.619 0.00 0.00 45.16 3.86
4477 4840 4.201950 GGGATCATCACTTGTATGTTGTGC 60.202 45.833 0.00 0.00 0.00 4.57
4494 4857 1.845791 TGCTCTGCATTTAGGGGATCA 59.154 47.619 0.00 0.00 31.71 2.92
4697 5060 7.063191 CAGACTGATTATCTGCTGGATATTTCG 59.937 40.741 0.00 0.00 37.38 3.46
4947 5310 6.495415 ACTTGACAAGTACTTGCAGGAGCA 62.495 45.833 30.19 19.81 44.72 4.26
4963 5326 4.304110 CTTTTCTGCCGTAGTACTTGACA 58.696 43.478 0.00 0.00 0.00 3.58
4972 5335 3.964909 ACTTTTTGCTTTTCTGCCGTAG 58.035 40.909 0.00 0.00 0.00 3.51
5223 5586 4.667262 CAGTATCCTGACTCTGAAGTTCG 58.333 47.826 0.00 0.00 41.50 3.95
5291 5654 0.030705 AGGAATAGCTGCTCCCTCCA 60.031 55.000 20.33 0.00 31.50 3.86
5344 5707 0.737367 TCAGAACGAATCGCTGCAGG 60.737 55.000 17.12 5.82 0.00 4.85
5405 5768 2.077687 AACAGATGGGCCATTCATCC 57.922 50.000 22.20 7.30 41.25 3.51
5456 5819 6.553953 TTTTCTTTTTGCCCTTAACTTCCT 57.446 33.333 0.00 0.00 0.00 3.36
5829 6192 6.104146 TGCGGCATACTATTATTCTTGGTA 57.896 37.500 0.00 0.00 0.00 3.25
5862 6225 6.228273 TCTCTGTTAATGTTTTCTGCTTCG 57.772 37.500 0.00 0.00 0.00 3.79
5943 6306 3.553828 TTTTGAGACTCGGGTTTGACT 57.446 42.857 0.00 0.00 0.00 3.41
5965 6328 5.468072 CAGTATCTTGATTACCACCATCTGC 59.532 44.000 0.00 0.00 0.00 4.26
5967 6330 7.623999 ATCAGTATCTTGATTACCACCATCT 57.376 36.000 0.00 0.00 34.17 2.90
6023 6386 1.895131 TCTTCTCTTTTGCATTGCCCC 59.105 47.619 6.12 0.00 0.00 5.80
6056 6419 7.095313 CCTGTTGCAGCATACTATTATTCTGAG 60.095 40.741 2.87 0.00 32.35 3.35
6188 6551 3.681593 TCATTTGTTCTTTGCCCATGG 57.318 42.857 4.14 4.14 0.00 3.66
6281 6644 7.158099 ACATTGCTTACAACCTTAGGATTTC 57.842 36.000 4.77 0.00 38.99 2.17
6413 6776 4.768448 TGGATTTGTCATTGAGCTGTTCAT 59.232 37.500 0.00 0.00 35.27 2.57
6447 6810 0.317436 CGCTAGCGCCTCTCTTACTG 60.317 60.000 26.07 0.00 0.00 2.74
6463 6826 1.001378 GGTGTCACTGAAAATTGCGCT 60.001 47.619 9.73 0.00 0.00 5.92
6521 6884 0.539438 TTCCACGCCAGCCTTTTCAT 60.539 50.000 0.00 0.00 0.00 2.57
6535 6898 6.748333 TGAATCATCTGATGAGTTTTCCAC 57.252 37.500 23.25 10.06 43.53 4.02
6536 6899 6.544931 GGATGAATCATCTGATGAGTTTTCCA 59.455 38.462 27.32 19.55 43.53 3.53
6676 7039 8.394121 GCAGAGGAACACATAAAAGATAAGAAG 58.606 37.037 0.00 0.00 0.00 2.85
6677 7040 7.336931 GGCAGAGGAACACATAAAAGATAAGAA 59.663 37.037 0.00 0.00 0.00 2.52
6678 7041 6.823689 GGCAGAGGAACACATAAAAGATAAGA 59.176 38.462 0.00 0.00 0.00 2.10
6817 7275 5.245531 TCAGTTAGCCAATTTCCACTAGTG 58.754 41.667 16.34 16.34 0.00 2.74
6818 7276 5.499004 TCAGTTAGCCAATTTCCACTAGT 57.501 39.130 0.00 0.00 0.00 2.57
6819 7277 5.882557 ACATCAGTTAGCCAATTTCCACTAG 59.117 40.000 0.00 0.00 0.00 2.57
6820 7278 5.647658 CACATCAGTTAGCCAATTTCCACTA 59.352 40.000 0.00 0.00 0.00 2.74
6821 7279 4.460382 CACATCAGTTAGCCAATTTCCACT 59.540 41.667 0.00 0.00 0.00 4.00
6944 7406 7.817962 GTCAAGCAGTTCTATCCAAACTAGTTA 59.182 37.037 8.92 0.00 35.25 2.24
7006 7469 3.557903 ATGTGCACCCTGCTCGCTT 62.558 57.895 15.69 0.00 45.31 4.68
7029 7492 6.388278 GGCTACAACATAGCTACCATAGTAC 58.612 44.000 0.00 0.00 40.25 2.73
7104 7567 7.390027 ACTATGTTCATCTAGTCAAGCAGTTT 58.610 34.615 0.00 0.00 0.00 2.66
7120 7583 2.933906 GGCGAAAATCGGACTATGTTCA 59.066 45.455 1.64 0.00 40.84 3.18
7131 7594 1.539827 ACCAGGAAAAGGCGAAAATCG 59.460 47.619 0.00 0.00 43.89 3.34
7146 7609 1.798813 GCTTCAACGTTGTAGACCAGG 59.201 52.381 31.47 13.25 0.00 4.45
7158 7621 0.514691 GGTCTCAGCAAGCTTCAACG 59.485 55.000 0.00 0.00 0.00 4.10
7229 7693 1.859841 TACTGGAGCCTCGGAGGACA 61.860 60.000 27.95 19.49 37.67 4.02
7368 7839 3.369546 AAAAACTGGGAATTGCGTGAG 57.630 42.857 0.00 0.00 0.00 3.51
7447 7936 4.451096 GTCACGACCACAAACTCAATACAT 59.549 41.667 0.00 0.00 0.00 2.29
7471 7960 5.278266 GGACAATTGACGAATTTTGAGGACA 60.278 40.000 13.59 0.00 28.65 4.02
7575 8344 6.651755 AAACAAAGCTTGACTGTGAATTTG 57.348 33.333 0.00 5.06 35.35 2.32
7582 8351 5.261209 TGCATTAAACAAAGCTTGACTGT 57.739 34.783 0.00 0.00 0.00 3.55
7648 8429 9.290988 TGATAAGCAATCCAAACTACTACAAAA 57.709 29.630 0.00 0.00 33.22 2.44
7652 8433 7.843490 TGTGATAAGCAATCCAAACTACTAC 57.157 36.000 0.00 0.00 33.22 2.73
7653 8434 8.046708 ACATGTGATAAGCAATCCAAACTACTA 58.953 33.333 0.00 0.00 33.22 1.82
7668 8449 4.744570 ACTACCACGTGACATGTGATAAG 58.255 43.478 26.07 20.29 37.29 1.73
7669 8450 4.794278 ACTACCACGTGACATGTGATAA 57.206 40.909 26.07 11.59 37.29 1.75
7672 8453 2.362717 TGAACTACCACGTGACATGTGA 59.637 45.455 26.07 8.88 37.29 3.58
7715 8498 8.680903 ACTACATTTATGAGAAATCTTGCAAGG 58.319 33.333 25.73 8.01 0.00 3.61
7809 8592 6.363577 TGTGTAAAAGAGAAACAGCTTGAG 57.636 37.500 0.00 0.00 0.00 3.02
7871 8669 4.755123 AGTCTTTGGCTGTGTATTGTGTAC 59.245 41.667 0.00 0.00 0.00 2.90
7872 8670 4.968259 AGTCTTTGGCTGTGTATTGTGTA 58.032 39.130 0.00 0.00 0.00 2.90
7873 8671 3.815401 GAGTCTTTGGCTGTGTATTGTGT 59.185 43.478 0.00 0.00 0.00 3.72
7874 8672 3.120546 CGAGTCTTTGGCTGTGTATTGTG 60.121 47.826 0.00 0.00 0.00 3.33
7896 8694 3.792053 CTCGCACCCCGTGATAGCC 62.792 68.421 0.00 0.00 35.23 3.93
7950 8750 0.521735 GGGAAGACGGCAAACATCAC 59.478 55.000 0.00 0.00 0.00 3.06
8040 8840 2.045926 GACGATGGGTGGCAGCTT 60.046 61.111 17.16 4.47 0.00 3.74
8041 8841 4.101448 GGACGATGGGTGGCAGCT 62.101 66.667 17.16 0.00 0.00 4.24
8075 8875 4.550422 TCGATGTTCTTGTGAAGTCTCTG 58.450 43.478 0.00 0.00 32.15 3.35
8102 8902 3.516615 GAGATATCCTACATCCAAGCGC 58.483 50.000 0.00 0.00 0.00 5.92
8169 8969 0.250727 TTTGCTAAACCGCCTGCTCT 60.251 50.000 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.