Multiple sequence alignment - TraesCS2B01G360900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G360900 chr2B 100.000 5754 0 0 1 5754 514028523 514034276 0.000000e+00 10626.0
1 TraesCS2B01G360900 chr2B 100.000 57 0 0 1557 1613 514030025 514030081 7.890000e-19 106.0
2 TraesCS2B01G360900 chr2B 100.000 57 0 0 1503 1559 514030079 514030135 7.890000e-19 106.0
3 TraesCS2B01G360900 chr2A 93.352 2091 83 24 3709 5754 551250696 551248617 0.000000e+00 3040.0
4 TraesCS2B01G360900 chr2A 93.744 2014 97 14 1651 3647 551252694 551250693 0.000000e+00 2994.0
5 TraesCS2B01G360900 chr2A 89.193 1277 78 23 1 1258 551254203 551252968 0.000000e+00 1539.0
6 TraesCS2B01G360900 chr2A 89.000 200 13 4 1310 1505 551252963 551252769 7.450000e-59 239.0
7 TraesCS2B01G360900 chr2A 97.059 34 0 1 5672 5704 551248843 551248810 8.050000e-04 56.5
8 TraesCS2B01G360900 chr2D 92.550 2067 118 18 1587 3642 437675511 437677552 0.000000e+00 2931.0
9 TraesCS2B01G360900 chr2D 94.132 1193 41 18 3711 4887 437677556 437678735 0.000000e+00 1788.0
10 TraesCS2B01G360900 chr2D 91.090 1156 79 17 107 1258 437674163 437675298 0.000000e+00 1543.0
11 TraesCS2B01G360900 chr2D 93.233 532 24 4 5232 5754 437679261 437679789 0.000000e+00 773.0
12 TraesCS2B01G360900 chr2D 89.732 224 14 4 1307 1526 437675300 437675518 1.580000e-70 278.0
13 TraesCS2B01G360900 chr2D 95.890 73 3 0 1 73 437666515 437666587 1.010000e-22 119.0
14 TraesCS2B01G360900 chr2D 94.521 73 4 0 64 136 437674094 437674166 4.710000e-21 113.0
15 TraesCS2B01G360900 chr2D 90.000 60 4 1 3666 3725 650775056 650775113 6.180000e-10 76.8
16 TraesCS2B01G360900 chr2D 92.683 41 1 2 5672 5711 437679560 437679599 2.240000e-04 58.4
17 TraesCS2B01G360900 chr1B 81.136 986 145 24 1738 2702 8239351 8240316 0.000000e+00 752.0
18 TraesCS2B01G360900 chr5A 81.236 922 109 35 2747 3632 35658854 35659747 0.000000e+00 686.0
19 TraesCS2B01G360900 chr6B 83.733 584 86 8 2123 2702 643396838 643396260 1.410000e-150 544.0
20 TraesCS2B01G360900 chr6B 83.986 281 38 4 2760 3039 643396170 643395896 4.420000e-66 263.0
21 TraesCS2B01G360900 chr6B 81.481 297 53 2 2879 3174 422650673 422650968 5.760000e-60 243.0
22 TraesCS2B01G360900 chr6B 89.565 115 12 0 2044 2158 422649382 422649496 4.650000e-31 147.0
23 TraesCS2B01G360900 chr6D 82.174 230 28 6 2707 2925 445831712 445831939 9.850000e-43 185.0
24 TraesCS2B01G360900 chr6D 90.435 115 11 0 2044 2158 270050742 270050856 9.990000e-33 152.0
25 TraesCS2B01G360900 chr7B 81.304 230 30 6 2707 2925 23081293 23081520 2.130000e-39 174.0
26 TraesCS2B01G360900 chr7D 97.917 48 1 0 3665 3712 175933977 175934024 3.690000e-12 84.2
27 TraesCS2B01G360900 chr7A 92.857 56 4 0 3666 3721 501106733 501106788 1.330000e-11 82.4
28 TraesCS2B01G360900 chr4A 94.340 53 3 0 3665 3717 644042826 644042774 1.330000e-11 82.4
29 TraesCS2B01G360900 chr4A 94.340 53 3 0 3665 3717 644079429 644079377 1.330000e-11 82.4
30 TraesCS2B01G360900 chr4A 94.340 53 3 0 3665 3717 644110468 644110416 1.330000e-11 82.4
31 TraesCS2B01G360900 chr5B 92.727 55 4 0 3665 3719 491863561 491863615 4.780000e-11 80.5
32 TraesCS2B01G360900 chr3D 92.727 55 3 1 3666 3720 248536501 248536448 1.720000e-10 78.7
33 TraesCS2B01G360900 chrUn 86.111 72 9 1 3666 3737 71312903 71312833 6.180000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G360900 chr2B 514028523 514034276 5753 False 10626.0 10626 100.0000 1 5754 1 chr2B.!!$F1 5753
1 TraesCS2B01G360900 chr2A 551248617 551254203 5586 True 1573.7 3040 92.4696 1 5754 5 chr2A.!!$R1 5753
2 TraesCS2B01G360900 chr2D 437674094 437679789 5695 False 1069.2 2931 92.5630 64 5754 7 chr2D.!!$F3 5690
3 TraesCS2B01G360900 chr1B 8239351 8240316 965 False 752.0 752 81.1360 1738 2702 1 chr1B.!!$F1 964
4 TraesCS2B01G360900 chr5A 35658854 35659747 893 False 686.0 686 81.2360 2747 3632 1 chr5A.!!$F1 885
5 TraesCS2B01G360900 chr6B 643395896 643396838 942 True 403.5 544 83.8595 2123 3039 2 chr6B.!!$R1 916

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
267 299 0.036875 CACCACAGTCCCTCCTTTCC 59.963 60.0 0.00 0.00 0.00 3.13 F
594 627 0.042731 TCCTAGGTTGTCCCTCCCTG 59.957 60.0 9.08 0.00 44.81 4.45 F
774 808 0.118346 TTACTCCTCCCAGGAAGGCA 59.882 55.0 0.00 0.00 45.28 4.75 F
2310 2382 0.037160 TGCTGCCACTGTGATCATGT 59.963 50.0 9.86 0.00 0.00 3.21 F
2799 2948 1.043816 GAGCCCTAGATGCAGTGCTA 58.956 55.0 17.60 3.01 0.00 3.49 F
3662 3841 2.306805 TCAGTACTCCCTCCTTACGTCA 59.693 50.0 0.00 0.00 0.00 4.35 F
4485 4669 0.250727 TTTGCTAAACCGCCTGCTCT 60.251 50.0 0.00 0.00 0.00 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1290 1337 0.038251 GCAACAGTTTTAGCTGGGCC 60.038 55.000 0.00 0.00 40.59 5.80 R
1838 1897 2.710220 TGCATTCACACATCAACAGC 57.290 45.000 0.00 0.00 0.00 4.40 R
2457 2532 2.971330 ACAAAGGAATGGCATGTTTCCA 59.029 40.909 18.02 9.32 43.21 3.53 R
3686 3865 0.613572 CCCCGCCCCAAAATAAGTGT 60.614 55.000 0.00 0.00 0.00 3.55 R
3688 3867 1.001120 CCCCCGCCCCAAAATAAGT 59.999 57.895 0.00 0.00 0.00 2.24 R
4579 4763 1.137825 CCTCTCGAGCTCCGACAAC 59.862 63.158 7.81 0.00 43.23 3.32 R
5496 6017 1.804748 CGCCTTTTCCTGGTCTACAAC 59.195 52.381 0.00 0.00 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 76 4.035102 GAGCCGTTGCCTTCCCCT 62.035 66.667 0.00 0.00 38.69 4.79
75 80 2.746277 CGTTGCCTTCCCCTTCCG 60.746 66.667 0.00 0.00 0.00 4.30
79 84 4.803908 GCCTTCCCCTTCCGCCTG 62.804 72.222 0.00 0.00 0.00 4.85
80 85 4.803908 CCTTCCCCTTCCGCCTGC 62.804 72.222 0.00 0.00 0.00 4.85
149 180 5.774498 AAAAGCTCCCACTAAACAAGAAG 57.226 39.130 0.00 0.00 0.00 2.85
185 216 1.403647 CCACTTCCACGACGCAATCTA 60.404 52.381 0.00 0.00 0.00 1.98
191 222 1.209128 CACGACGCAATCTACATCCC 58.791 55.000 0.00 0.00 0.00 3.85
192 223 1.112113 ACGACGCAATCTACATCCCT 58.888 50.000 0.00 0.00 0.00 4.20
193 224 1.480954 ACGACGCAATCTACATCCCTT 59.519 47.619 0.00 0.00 0.00 3.95
195 226 2.223829 CGACGCAATCTACATCCCTTCT 60.224 50.000 0.00 0.00 0.00 2.85
197 228 3.798202 ACGCAATCTACATCCCTTCTTC 58.202 45.455 0.00 0.00 0.00 2.87
267 299 0.036875 CACCACAGTCCCTCCTTTCC 59.963 60.000 0.00 0.00 0.00 3.13
279 311 2.127297 CTTTCCCCCTCCTCCCCA 59.873 66.667 0.00 0.00 0.00 4.96
335 367 2.746277 CCGGGGCGGTTTCTGAAG 60.746 66.667 0.00 0.00 42.73 3.02
396 428 2.730672 CGGTTCCTTTCGCTGCTCG 61.731 63.158 0.00 0.00 40.15 5.03
594 627 0.042731 TCCTAGGTTGTCCCTCCCTG 59.957 60.000 9.08 0.00 44.81 4.45
649 682 3.050275 GTCCGTGCTTGCCTGGTC 61.050 66.667 0.00 0.00 0.00 4.02
725 759 4.403453 CGGTTTGAATGAGAAATTCGTCC 58.597 43.478 0.00 0.00 0.00 4.79
765 799 3.054361 TGCAATTTCCTCTTACTCCTCCC 60.054 47.826 0.00 0.00 0.00 4.30
766 800 3.054361 GCAATTTCCTCTTACTCCTCCCA 60.054 47.826 0.00 0.00 0.00 4.37
767 801 4.775236 CAATTTCCTCTTACTCCTCCCAG 58.225 47.826 0.00 0.00 0.00 4.45
768 802 2.552093 TTCCTCTTACTCCTCCCAGG 57.448 55.000 0.00 0.00 36.46 4.45
770 804 2.008400 TCCTCTTACTCCTCCCAGGAA 58.992 52.381 0.00 0.00 45.28 3.36
772 806 2.393646 CTCTTACTCCTCCCAGGAAGG 58.606 57.143 0.00 0.00 45.28 3.46
773 807 0.833949 CTTACTCCTCCCAGGAAGGC 59.166 60.000 0.00 0.00 45.28 4.35
774 808 0.118346 TTACTCCTCCCAGGAAGGCA 59.882 55.000 0.00 0.00 45.28 4.75
775 809 0.343372 TACTCCTCCCAGGAAGGCAT 59.657 55.000 0.00 0.00 45.28 4.40
776 810 0.985490 ACTCCTCCCAGGAAGGCATC 60.985 60.000 0.00 0.00 45.28 3.91
777 811 0.693767 CTCCTCCCAGGAAGGCATCT 60.694 60.000 0.00 0.00 45.28 2.90
801 835 4.010349 GGTATTCTAGCCTTGCTTGTGTT 58.990 43.478 0.00 0.00 40.44 3.32
848 884 2.168313 CTGTCCAAGGTTTTGCCAAGTT 59.832 45.455 0.00 0.00 40.61 2.66
889 925 2.192263 GGTGAGGAGGATTCTGGTTCT 58.808 52.381 0.00 0.00 0.00 3.01
921 957 1.304134 GGTGCTCCGAATTTGGGGT 60.304 57.895 13.47 0.00 0.00 4.95
931 967 2.364002 CGAATTTGGGGTGTTTTGGAGT 59.636 45.455 0.00 0.00 0.00 3.85
932 968 3.552068 CGAATTTGGGGTGTTTTGGAGTC 60.552 47.826 0.00 0.00 0.00 3.36
933 969 2.838637 TTTGGGGTGTTTTGGAGTCT 57.161 45.000 0.00 0.00 0.00 3.24
934 970 2.838637 TTGGGGTGTTTTGGAGTCTT 57.161 45.000 0.00 0.00 0.00 3.01
936 972 1.328279 GGGGTGTTTTGGAGTCTTGG 58.672 55.000 0.00 0.00 0.00 3.61
937 973 0.673985 GGGTGTTTTGGAGTCTTGGC 59.326 55.000 0.00 0.00 0.00 4.52
940 976 1.609072 GTGTTTTGGAGTCTTGGCCTC 59.391 52.381 3.32 0.00 0.00 4.70
946 985 2.685380 AGTCTTGGCCTCCTCGGG 60.685 66.667 3.32 0.00 0.00 5.14
955 994 3.080121 CTCCTCGGGCTCCTGCTT 61.080 66.667 0.00 0.00 39.59 3.91
963 1002 1.246737 GGGCTCCTGCTTCTTGGTTG 61.247 60.000 0.00 0.00 39.59 3.77
971 1010 0.250338 GCTTCTTGGTTGGTCCGACT 60.250 55.000 9.24 0.00 39.52 4.18
972 1011 1.797025 CTTCTTGGTTGGTCCGACTC 58.203 55.000 9.24 0.49 39.52 3.36
973 1012 0.395312 TTCTTGGTTGGTCCGACTCC 59.605 55.000 9.24 0.00 39.52 3.85
974 1013 1.374252 CTTGGTTGGTCCGACTCCG 60.374 63.158 9.24 0.00 39.52 4.63
975 1014 1.812686 CTTGGTTGGTCCGACTCCGA 61.813 60.000 9.24 0.00 39.52 4.55
976 1015 2.091102 TTGGTTGGTCCGACTCCGAC 62.091 60.000 9.24 0.00 39.52 4.79
983 1022 3.382832 CCGACTCCGACCAAGGCT 61.383 66.667 0.00 0.00 38.22 4.58
984 1023 2.182030 CGACTCCGACCAAGGCTC 59.818 66.667 0.00 0.00 38.22 4.70
1014 1053 2.911143 CCAATGGAGCCGCCTAGT 59.089 61.111 0.00 0.00 37.63 2.57
1017 1056 0.601311 CAATGGAGCCGCCTAGTAGC 60.601 60.000 0.00 0.00 37.63 3.58
1024 1063 2.427245 CCGCCTAGTAGCAGCAGGT 61.427 63.158 0.00 0.00 0.00 4.00
1136 1175 7.371936 GTCTCTCTACTCTGTTGCTTCTTTTA 58.628 38.462 0.00 0.00 0.00 1.52
1175 1222 6.295249 TCTGTCATGTGTGAGTAAAATGGAA 58.705 36.000 0.00 0.00 34.36 3.53
1181 1228 4.764823 TGTGTGAGTAAAATGGAATGGTCC 59.235 41.667 0.00 0.00 45.21 4.46
1188 1235 5.594317 AGTAAAATGGAATGGTCCTATGTGC 59.406 40.000 0.00 0.00 45.22 4.57
1193 1240 2.438021 GGAATGGTCCTATGTGCCTGTA 59.562 50.000 0.00 0.00 41.24 2.74
1199 1246 3.627577 GGTCCTATGTGCCTGTACATTTG 59.372 47.826 6.19 1.29 41.31 2.32
1213 1260 2.963432 ACATTTGCTTGCCTTGTATGC 58.037 42.857 0.00 0.00 0.00 3.14
1214 1261 2.273557 CATTTGCTTGCCTTGTATGCC 58.726 47.619 0.00 0.00 0.00 4.40
1217 1264 1.140375 GCTTGCCTTGTATGCCAGC 59.860 57.895 0.00 0.00 39.81 4.85
1244 1291 3.999001 TGATTTCTCTGCTGCTTGTGTAG 59.001 43.478 0.00 0.00 0.00 2.74
1253 1300 2.915349 CTGCTTGTGTAGATGCCTGAT 58.085 47.619 0.00 0.00 0.00 2.90
1269 1316 2.630580 CCTGATAGGCTGGTACTTCTCC 59.369 54.545 0.00 0.00 0.00 3.71
1270 1317 3.571590 CTGATAGGCTGGTACTTCTCCT 58.428 50.000 0.00 0.00 0.00 3.69
1271 1318 3.964031 CTGATAGGCTGGTACTTCTCCTT 59.036 47.826 0.00 0.00 0.00 3.36
1272 1319 4.362677 TGATAGGCTGGTACTTCTCCTTT 58.637 43.478 0.00 0.00 0.00 3.11
1273 1320 4.406003 TGATAGGCTGGTACTTCTCCTTTC 59.594 45.833 0.00 1.11 0.00 2.62
1274 1321 2.909217 AGGCTGGTACTTCTCCTTTCT 58.091 47.619 0.00 0.00 0.00 2.52
1275 1322 3.252351 AGGCTGGTACTTCTCCTTTCTT 58.748 45.455 0.00 0.00 0.00 2.52
1276 1323 3.008485 AGGCTGGTACTTCTCCTTTCTTG 59.992 47.826 0.00 0.00 0.00 3.02
1277 1324 3.339141 GCTGGTACTTCTCCTTTCTTGG 58.661 50.000 0.00 0.00 0.00 3.61
1278 1325 3.008049 GCTGGTACTTCTCCTTTCTTGGA 59.992 47.826 0.00 0.00 34.52 3.53
1290 1337 7.313951 CTCCTTTCTTGGAGCACTTAATTAG 57.686 40.000 0.00 0.00 45.84 1.73
1291 1338 6.180472 TCCTTTCTTGGAGCACTTAATTAGG 58.820 40.000 0.00 0.00 0.00 2.69
1292 1339 5.163612 CCTTTCTTGGAGCACTTAATTAGGC 60.164 44.000 0.00 0.00 0.00 3.93
1293 1340 3.886123 TCTTGGAGCACTTAATTAGGCC 58.114 45.455 0.00 0.00 0.00 5.19
1294 1341 2.729028 TGGAGCACTTAATTAGGCCC 57.271 50.000 0.00 1.82 0.00 5.80
1295 1342 1.919654 TGGAGCACTTAATTAGGCCCA 59.080 47.619 0.00 4.00 0.00 5.36
1296 1343 2.092429 TGGAGCACTTAATTAGGCCCAG 60.092 50.000 0.00 0.00 0.00 4.45
1297 1344 1.950216 GAGCACTTAATTAGGCCCAGC 59.050 52.381 0.00 0.00 0.00 4.85
1298 1345 1.566231 AGCACTTAATTAGGCCCAGCT 59.434 47.619 0.00 0.00 0.00 4.24
1299 1346 2.777692 AGCACTTAATTAGGCCCAGCTA 59.222 45.455 0.00 0.00 0.00 3.32
1300 1347 3.202151 AGCACTTAATTAGGCCCAGCTAA 59.798 43.478 0.00 0.00 0.00 3.09
1301 1348 3.951680 GCACTTAATTAGGCCCAGCTAAA 59.048 43.478 0.00 0.00 0.00 1.85
1302 1349 4.401202 GCACTTAATTAGGCCCAGCTAAAA 59.599 41.667 0.00 0.00 0.00 1.52
1303 1350 5.678871 GCACTTAATTAGGCCCAGCTAAAAC 60.679 44.000 0.00 0.00 0.00 2.43
1304 1351 5.652452 CACTTAATTAGGCCCAGCTAAAACT 59.348 40.000 0.00 0.00 0.00 2.66
1305 1352 5.652452 ACTTAATTAGGCCCAGCTAAAACTG 59.348 40.000 0.00 0.00 37.42 3.16
1308 1355 1.620822 AGGCCCAGCTAAAACTGTTG 58.379 50.000 0.00 0.00 35.83 3.33
1318 1365 5.180117 CAGCTAAAACTGTTGCTCACTATGT 59.820 40.000 1.32 0.00 33.03 2.29
1331 1378 4.695455 GCTCACTATGTTGTTCCAGCTTTA 59.305 41.667 0.00 0.00 0.00 1.85
1338 1385 5.371115 TGTTGTTCCAGCTTTAGTTATGC 57.629 39.130 0.00 0.00 0.00 3.14
1342 1389 8.044309 TGTTGTTCCAGCTTTAGTTATGCTATA 58.956 33.333 0.00 0.00 35.64 1.31
1343 1390 9.057089 GTTGTTCCAGCTTTAGTTATGCTATAT 57.943 33.333 0.00 0.00 35.64 0.86
1355 1402 9.710900 TTAGTTATGCTATATGACCAGATTGTG 57.289 33.333 0.00 0.00 0.00 3.33
1379 1429 4.702131 ACCTGGCTTGAGTTATTAGCTTTG 59.298 41.667 0.00 0.00 35.30 2.77
1407 1458 6.597562 AGTAGTTGTTGGTTTAACTGATGGA 58.402 36.000 0.00 0.00 40.05 3.41
1413 1464 3.750371 TGGTTTAACTGATGGACTGGTG 58.250 45.455 0.00 0.00 0.00 4.17
1435 1486 6.355638 GTGTCATTTCAGTTTACTCTGTTCG 58.644 40.000 0.00 0.00 36.85 3.95
1493 1544 7.881775 ATCAAATAACCCTTTATGGACAGAC 57.118 36.000 0.00 0.00 38.35 3.51
1494 1545 6.785076 TCAAATAACCCTTTATGGACAGACA 58.215 36.000 0.00 0.00 38.35 3.41
1505 1556 3.769739 TGGACAGACAGTATGCACTTT 57.230 42.857 0.00 0.00 42.53 2.66
1507 1558 3.070878 TGGACAGACAGTATGCACTTTCA 59.929 43.478 0.00 0.00 42.53 2.69
1509 1560 3.403038 ACAGACAGTATGCACTTTCACC 58.597 45.455 0.00 0.00 42.53 4.02
1510 1561 2.744202 CAGACAGTATGCACTTTCACCC 59.256 50.000 0.00 0.00 42.53 4.61
1511 1562 2.371841 AGACAGTATGCACTTTCACCCA 59.628 45.455 0.00 0.00 42.53 4.51
1512 1563 3.009473 AGACAGTATGCACTTTCACCCAT 59.991 43.478 0.00 0.00 42.53 4.00
1513 1564 4.225042 AGACAGTATGCACTTTCACCCATA 59.775 41.667 0.00 0.00 42.53 2.74
1514 1565 4.917385 ACAGTATGCACTTTCACCCATAA 58.083 39.130 0.00 0.00 42.53 1.90
1515 1566 4.943705 ACAGTATGCACTTTCACCCATAAG 59.056 41.667 0.00 0.00 42.53 1.73
1516 1567 4.336433 CAGTATGCACTTTCACCCATAAGG 59.664 45.833 0.00 0.00 35.29 2.69
1517 1568 1.544724 TGCACTTTCACCCATAAGGC 58.455 50.000 0.00 0.00 40.58 4.35
1518 1569 1.075374 TGCACTTTCACCCATAAGGCT 59.925 47.619 0.00 0.00 40.58 4.58
1519 1570 2.307392 TGCACTTTCACCCATAAGGCTA 59.693 45.455 0.00 0.00 40.58 3.93
1520 1571 3.053693 TGCACTTTCACCCATAAGGCTAT 60.054 43.478 0.00 0.00 40.58 2.97
1521 1572 4.165180 TGCACTTTCACCCATAAGGCTATA 59.835 41.667 0.00 0.00 40.58 1.31
1522 1573 5.163099 TGCACTTTCACCCATAAGGCTATAT 60.163 40.000 0.00 0.00 40.58 0.86
1523 1574 5.182001 GCACTTTCACCCATAAGGCTATATG 59.818 44.000 0.00 0.00 40.58 1.78
1534 1585 8.738645 CCATAAGGCTATATGGGATCTTTTAC 57.261 38.462 19.61 0.00 45.73 2.01
1535 1586 8.328758 CCATAAGGCTATATGGGATCTTTTACA 58.671 37.037 19.61 0.00 45.73 2.41
1536 1587 9.911788 CATAAGGCTATATGGGATCTTTTACAT 57.088 33.333 0.00 0.00 31.06 2.29
1539 1590 9.911788 AAGGCTATATGGGATCTTTTACATATG 57.088 33.333 0.00 0.00 37.18 1.78
1540 1591 7.995488 AGGCTATATGGGATCTTTTACATATGC 59.005 37.037 1.58 0.00 37.18 3.14
1541 1592 7.995488 GGCTATATGGGATCTTTTACATATGCT 59.005 37.037 1.58 0.00 37.18 3.79
1542 1593 9.401058 GCTATATGGGATCTTTTACATATGCTT 57.599 33.333 1.58 0.00 37.18 3.91
1545 1596 9.812347 ATATGGGATCTTTTACATATGCTTCAA 57.188 29.630 1.58 0.00 35.75 2.69
1546 1597 7.333528 TGGGATCTTTTACATATGCTTCAAC 57.666 36.000 1.58 0.00 0.00 3.18
1547 1598 6.321181 TGGGATCTTTTACATATGCTTCAACC 59.679 38.462 1.58 0.00 0.00 3.77
1548 1599 6.547510 GGGATCTTTTACATATGCTTCAACCT 59.452 38.462 1.58 0.00 0.00 3.50
1549 1600 7.719633 GGGATCTTTTACATATGCTTCAACCTA 59.280 37.037 1.58 0.00 0.00 3.08
1550 1601 9.120538 GGATCTTTTACATATGCTTCAACCTAA 57.879 33.333 1.58 0.00 0.00 2.69
1574 1625 7.978099 AAAAATCTTTCACCCATAAGGCTAT 57.022 32.000 0.00 0.00 40.58 2.97
1588 1639 8.738645 CCATAAGGCTATATGGGATCTTTTAC 57.261 38.462 19.61 0.00 45.73 2.01
1589 1640 8.328758 CCATAAGGCTATATGGGATCTTTTACA 58.671 37.037 19.61 0.00 45.73 2.41
1590 1641 9.911788 CATAAGGCTATATGGGATCTTTTACAT 57.088 33.333 0.00 0.00 31.06 2.29
1593 1644 9.911788 AAGGCTATATGGGATCTTTTACATATG 57.088 33.333 0.00 0.00 37.18 1.78
1603 1654 7.719633 GGGATCTTTTACATATGCTTCAACCTA 59.280 37.037 1.58 0.00 0.00 3.08
1628 1679 4.734398 AATCTTGTGGTTTCTTGCACAA 57.266 36.364 0.00 0.00 36.33 3.33
1632 1683 5.486526 TCTTGTGGTTTCTTGCACAAAAAT 58.513 33.333 0.00 0.00 37.14 1.82
1635 1686 7.437862 TCTTGTGGTTTCTTGCACAAAAATATC 59.562 33.333 0.00 0.00 37.14 1.63
1637 1688 6.922957 TGTGGTTTCTTGCACAAAAATATCTC 59.077 34.615 0.00 0.00 0.00 2.75
1638 1689 6.088085 GTGGTTTCTTGCACAAAAATATCTCG 59.912 38.462 0.00 0.00 0.00 4.04
1639 1690 6.149633 GGTTTCTTGCACAAAAATATCTCGT 58.850 36.000 0.00 0.00 0.00 4.18
1640 1691 6.088085 GGTTTCTTGCACAAAAATATCTCGTG 59.912 38.462 0.00 0.00 0.00 4.35
1647 1698 6.991485 CACAAAAATATCTCGTGCTTGTTT 57.009 33.333 0.00 0.00 0.00 2.83
1648 1699 7.393551 CACAAAAATATCTCGTGCTTGTTTT 57.606 32.000 0.00 0.00 0.00 2.43
1649 1700 7.275785 CACAAAAATATCTCGTGCTTGTTTTG 58.724 34.615 0.00 0.00 39.45 2.44
1671 1722 5.559770 TGTCAGAACTAGCATCAATTGGAA 58.440 37.500 5.42 0.00 0.00 3.53
1672 1723 6.003326 TGTCAGAACTAGCATCAATTGGAAA 58.997 36.000 5.42 0.00 0.00 3.13
1675 1726 7.334421 GTCAGAACTAGCATCAATTGGAAACTA 59.666 37.037 5.42 2.46 0.00 2.24
1676 1727 7.550551 TCAGAACTAGCATCAATTGGAAACTAG 59.449 37.037 5.42 13.14 39.34 2.57
1677 1728 7.335422 CAGAACTAGCATCAATTGGAAACTAGT 59.665 37.037 17.86 17.86 44.12 2.57
1678 1729 7.550906 AGAACTAGCATCAATTGGAAACTAGTC 59.449 37.037 21.08 16.63 42.71 2.59
1694 1745 7.875554 GGAAACTAGTCTCAGAAAATGTTCTCT 59.124 37.037 0.00 0.00 42.45 3.10
1734 1785 8.418662 AGAAGTATTTAGTATGTATTGCGTCCA 58.581 33.333 0.00 0.00 0.00 4.02
1737 1788 8.148351 AGTATTTAGTATGTATTGCGTCCATGT 58.852 33.333 0.00 0.00 0.00 3.21
1738 1789 7.801716 ATTTAGTATGTATTGCGTCCATGTT 57.198 32.000 0.00 0.00 0.00 2.71
1799 1858 7.047891 TCAGTACATATTTGACCTTGTGGATC 58.952 38.462 0.00 0.00 37.04 3.36
1801 1860 7.011763 CAGTACATATTTGACCTTGTGGATCTG 59.988 40.741 0.00 0.00 37.04 2.90
1806 1865 4.698201 TTGACCTTGTGGATCTGTTGTA 57.302 40.909 0.00 0.00 37.04 2.41
1808 1867 5.241403 TGACCTTGTGGATCTGTTGTATT 57.759 39.130 0.00 0.00 37.04 1.89
1827 1886 7.908193 TGTATTTTTCGAAAGCTTTCAGTTC 57.092 32.000 32.52 11.92 37.01 3.01
1838 1897 5.551760 AGCTTTCAGTTCAATTATGTCGG 57.448 39.130 0.00 0.00 0.00 4.79
1860 1931 3.551454 GCTGTTGATGTGTGAATGCAAGT 60.551 43.478 0.00 0.00 0.00 3.16
1861 1932 4.613944 CTGTTGATGTGTGAATGCAAGTT 58.386 39.130 0.00 0.00 0.00 2.66
1862 1933 4.609947 TGTTGATGTGTGAATGCAAGTTC 58.390 39.130 0.00 0.00 0.00 3.01
1863 1934 4.097589 TGTTGATGTGTGAATGCAAGTTCA 59.902 37.500 0.00 0.00 35.84 3.18
1883 1954 4.811908 TCACACATGGATTTGCAAATGAG 58.188 39.130 28.67 16.23 0.00 2.90
1889 1960 4.933505 TGGATTTGCAAATGAGTGACAA 57.066 36.364 28.67 4.37 0.00 3.18
1933 2004 5.743026 TGTAAAATCTGAAAGTGCAACGA 57.257 34.783 0.00 0.00 45.86 3.85
1987 2058 9.868277 TGTTGTTAGTTCATCTTTGTTTGATTT 57.132 25.926 0.00 0.00 0.00 2.17
2034 2105 5.010719 TCGTGTCCCCTCACTTCATATAATC 59.989 44.000 0.00 0.00 36.33 1.75
2035 2106 5.221441 CGTGTCCCCTCACTTCATATAATCA 60.221 44.000 0.00 0.00 36.33 2.57
2036 2107 6.591935 GTGTCCCCTCACTTCATATAATCAA 58.408 40.000 0.00 0.00 35.68 2.57
2037 2108 6.483640 GTGTCCCCTCACTTCATATAATCAAC 59.516 42.308 0.00 0.00 35.68 3.18
2164 2236 3.193263 CTGCATCATCAGGTACAGTGTC 58.807 50.000 0.00 0.00 0.00 3.67
2168 2240 5.833131 TGCATCATCAGGTACAGTGTCTATA 59.167 40.000 0.00 0.00 0.00 1.31
2203 2275 6.364701 TCACCCTTAGCAAGCACATTAATAT 58.635 36.000 0.00 0.00 0.00 1.28
2209 2281 3.003689 AGCAAGCACATTAATATGCGTCC 59.996 43.478 12.82 0.00 46.74 4.79
2230 2302 7.385205 GCGTCCAAATACTCATATTATGTGTCT 59.615 37.037 13.17 3.51 37.98 3.41
2310 2382 0.037160 TGCTGCCACTGTGATCATGT 59.963 50.000 9.86 0.00 0.00 3.21
2457 2532 8.785329 TTGCTTTGTGGTAAATTTTCTTTTCT 57.215 26.923 0.00 0.00 0.00 2.52
2458 2533 8.195617 TGCTTTGTGGTAAATTTTCTTTTCTG 57.804 30.769 0.00 0.00 0.00 3.02
2489 2565 4.503123 GCCATTCCTTTGTATTTATGCCCC 60.503 45.833 0.00 0.00 0.00 5.80
2495 2571 4.536765 CTTTGTATTTATGCCCCTCCTGT 58.463 43.478 0.00 0.00 0.00 4.00
2548 2628 3.152341 CTCAAAACTGCAGGATGGAACT 58.848 45.455 19.93 0.00 34.45 3.01
2638 2718 7.695480 TTTTTCAATTATGGATGACCTTCGA 57.305 32.000 0.00 0.00 37.04 3.71
2799 2948 1.043816 GAGCCCTAGATGCAGTGCTA 58.956 55.000 17.60 3.01 0.00 3.49
3387 3564 6.071320 GGGATCTTGCTTTCCAAGGTATAAT 58.929 40.000 3.52 0.00 44.80 1.28
3450 3627 5.353394 ACTTGAGGTTTCTTGTACTGACA 57.647 39.130 0.00 0.00 0.00 3.58
3513 3691 3.679389 AGATTCTTCACATGGTGGTCAC 58.321 45.455 0.00 0.00 33.87 3.67
3643 3822 9.905713 AGGTTATCTTTTCTTGCTAATACATCA 57.094 29.630 0.00 0.00 0.00 3.07
3649 3828 9.587772 TCTTTTCTTGCTAATACATCAGTACTC 57.412 33.333 0.00 0.00 31.96 2.59
3650 3829 8.718102 TTTTCTTGCTAATACATCAGTACTCC 57.282 34.615 0.00 0.00 31.96 3.85
3651 3830 6.406692 TCTTGCTAATACATCAGTACTCCC 57.593 41.667 0.00 0.00 31.96 4.30
3652 3831 6.136857 TCTTGCTAATACATCAGTACTCCCT 58.863 40.000 0.00 0.00 31.96 4.20
3653 3832 6.265649 TCTTGCTAATACATCAGTACTCCCTC 59.734 42.308 0.00 0.00 31.96 4.30
3654 3833 4.833380 TGCTAATACATCAGTACTCCCTCC 59.167 45.833 0.00 0.00 31.96 4.30
3655 3834 5.081032 GCTAATACATCAGTACTCCCTCCT 58.919 45.833 0.00 0.00 31.96 3.69
3656 3835 5.540719 GCTAATACATCAGTACTCCCTCCTT 59.459 44.000 0.00 0.00 31.96 3.36
3657 3836 6.720288 GCTAATACATCAGTACTCCCTCCTTA 59.280 42.308 0.00 0.00 31.96 2.69
3658 3837 6.980416 AATACATCAGTACTCCCTCCTTAC 57.020 41.667 0.00 0.00 31.96 2.34
3659 3838 3.288964 ACATCAGTACTCCCTCCTTACG 58.711 50.000 0.00 0.00 0.00 3.18
3660 3839 3.288964 CATCAGTACTCCCTCCTTACGT 58.711 50.000 0.00 0.00 0.00 3.57
3661 3840 2.996631 TCAGTACTCCCTCCTTACGTC 58.003 52.381 0.00 0.00 0.00 4.34
3662 3841 2.306805 TCAGTACTCCCTCCTTACGTCA 59.693 50.000 0.00 0.00 0.00 4.35
3663 3842 3.053842 TCAGTACTCCCTCCTTACGTCAT 60.054 47.826 0.00 0.00 0.00 3.06
3664 3843 3.700038 CAGTACTCCCTCCTTACGTCATT 59.300 47.826 0.00 0.00 0.00 2.57
3665 3844 4.159879 CAGTACTCCCTCCTTACGTCATTT 59.840 45.833 0.00 0.00 0.00 2.32
3666 3845 5.359009 CAGTACTCCCTCCTTACGTCATTTA 59.641 44.000 0.00 0.00 0.00 1.40
3667 3846 5.954150 AGTACTCCCTCCTTACGTCATTTAA 59.046 40.000 0.00 0.00 0.00 1.52
3668 3847 5.750352 ACTCCCTCCTTACGTCATTTAAA 57.250 39.130 0.00 0.00 0.00 1.52
3669 3848 5.731591 ACTCCCTCCTTACGTCATTTAAAG 58.268 41.667 0.00 0.00 0.00 1.85
3670 3849 5.247792 ACTCCCTCCTTACGTCATTTAAAGT 59.752 40.000 0.00 0.00 0.00 2.66
3671 3850 6.117975 TCCCTCCTTACGTCATTTAAAGTT 57.882 37.500 0.00 0.00 0.00 2.66
3672 3851 7.038799 ACTCCCTCCTTACGTCATTTAAAGTTA 60.039 37.037 0.00 0.00 0.00 2.24
3673 3852 7.325694 TCCCTCCTTACGTCATTTAAAGTTAG 58.674 38.462 0.00 0.00 0.00 2.34
3674 3853 7.038799 TCCCTCCTTACGTCATTTAAAGTTAGT 60.039 37.037 0.00 0.00 0.00 2.24
3675 3854 8.253113 CCCTCCTTACGTCATTTAAAGTTAGTA 58.747 37.037 0.00 0.00 0.00 1.82
3676 3855 9.080915 CCTCCTTACGTCATTTAAAGTTAGTAC 57.919 37.037 0.00 0.00 0.00 2.73
3677 3856 9.630098 CTCCTTACGTCATTTAAAGTTAGTACA 57.370 33.333 0.00 0.00 0.00 2.90
3678 3857 9.979578 TCCTTACGTCATTTAAAGTTAGTACAA 57.020 29.630 0.00 0.00 0.00 2.41
3683 3862 9.925268 ACGTCATTTAAAGTTAGTACAAAGTTG 57.075 29.630 0.00 0.00 0.00 3.16
3690 3869 9.880157 TTAAAGTTAGTACAAAGTTGAGACACT 57.120 29.630 0.00 0.00 0.00 3.55
3691 3870 8.788325 AAAGTTAGTACAAAGTTGAGACACTT 57.212 30.769 0.00 0.98 38.74 3.16
3692 3871 9.880157 AAAGTTAGTACAAAGTTGAGACACTTA 57.120 29.630 0.00 0.00 35.87 2.24
3698 3877 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
3699 3878 6.805713 ACAAAGTTGAGACACTTATTTTGGG 58.194 36.000 0.00 0.00 35.87 4.12
3700 3879 6.183360 ACAAAGTTGAGACACTTATTTTGGGG 60.183 38.462 0.00 0.00 35.87 4.96
3701 3880 3.826729 AGTTGAGACACTTATTTTGGGGC 59.173 43.478 0.00 0.00 0.00 5.80
3702 3881 2.432444 TGAGACACTTATTTTGGGGCG 58.568 47.619 0.00 0.00 0.00 6.13
3703 3882 1.743394 GAGACACTTATTTTGGGGCGG 59.257 52.381 0.00 0.00 0.00 6.13
3704 3883 0.815095 GACACTTATTTTGGGGCGGG 59.185 55.000 0.00 0.00 0.00 6.13
3705 3884 0.613572 ACACTTATTTTGGGGCGGGG 60.614 55.000 0.00 0.00 0.00 5.73
3706 3885 1.001120 ACTTATTTTGGGGCGGGGG 59.999 57.895 0.00 0.00 0.00 5.40
3751 3930 3.002759 GTCTTGTGACCAGCTTCACTTTC 59.997 47.826 17.26 4.69 45.34 2.62
3794 3973 5.133221 AGCACATGTTGGGAATAGGTTATC 58.867 41.667 0.00 0.00 0.00 1.75
3836 4015 9.770097 CATTATCTACTGCTTTCTATTCCTTGA 57.230 33.333 0.00 0.00 0.00 3.02
3862 4044 7.568199 AATATTTGAACTTACAGAATCGGGG 57.432 36.000 0.00 0.00 0.00 5.73
3933 4115 4.087892 GCAAGCGGCAGGGAGAGA 62.088 66.667 1.45 0.00 43.97 3.10
3944 4126 2.489722 GCAGGGAGAGATTTTGGTGAAC 59.510 50.000 0.00 0.00 0.00 3.18
4019 4201 1.770061 AGTGGGGTTCTTAACGTTGGA 59.230 47.619 11.99 6.38 0.00 3.53
4046 4228 4.096382 CCGGCATATGTAATCCTTAATGCC 59.904 45.833 12.92 12.92 46.97 4.40
4055 4237 0.837272 TCCTTAATGCCCTCCTTCGG 59.163 55.000 0.00 0.00 0.00 4.30
4161 4345 3.719871 TGATTACCTTAGCCTGACCTGA 58.280 45.455 0.00 0.00 0.00 3.86
4185 4369 4.860802 TGGAACATATTCAGGTGATGGT 57.139 40.909 0.00 0.00 36.46 3.55
4186 4370 4.525996 TGGAACATATTCAGGTGATGGTG 58.474 43.478 0.00 0.00 36.46 4.17
4485 4669 0.250727 TTTGCTAAACCGCCTGCTCT 60.251 50.000 0.00 0.00 0.00 4.09
4552 4736 3.516615 GAGATATCCTACATCCAAGCGC 58.483 50.000 0.00 0.00 0.00 5.92
4579 4763 4.550422 TCGATGTTCTTGTGAAGTCTCTG 58.450 43.478 0.00 0.00 32.15 3.35
4613 4797 4.101448 GGACGATGGGTGGCAGCT 62.101 66.667 17.16 0.00 0.00 4.24
4614 4798 2.045926 GACGATGGGTGGCAGCTT 60.046 61.111 17.16 4.47 0.00 3.74
4704 4888 0.521735 GGGAAGACGGCAAACATCAC 59.478 55.000 0.00 0.00 0.00 3.06
4758 4942 3.792053 CTCGCACCCCGTGATAGCC 62.792 68.421 0.00 0.00 35.23 3.93
4780 4966 3.120546 CGAGTCTTTGGCTGTGTATTGTG 60.121 47.826 0.00 0.00 0.00 3.33
4781 4967 3.815401 GAGTCTTTGGCTGTGTATTGTGT 59.185 43.478 0.00 0.00 0.00 3.72
4782 4968 4.968259 AGTCTTTGGCTGTGTATTGTGTA 58.032 39.130 0.00 0.00 0.00 2.90
4783 4969 4.755123 AGTCTTTGGCTGTGTATTGTGTAC 59.245 41.667 0.00 0.00 0.00 2.90
4845 5046 6.363577 TGTGTAAAAGAGAAACAGCTTGAG 57.636 37.500 0.00 0.00 0.00 3.02
4939 5140 8.680903 ACTACATTTATGAGAAATCTTGCAAGG 58.319 33.333 25.73 8.01 0.00 3.61
4982 5185 2.362717 TGAACTACCACGTGACATGTGA 59.637 45.455 26.07 8.88 37.29 3.58
4985 5188 4.794278 ACTACCACGTGACATGTGATAA 57.206 40.909 26.07 11.59 37.29 1.75
4986 5189 4.744570 ACTACCACGTGACATGTGATAAG 58.255 43.478 26.07 20.29 37.29 1.73
5001 5204 8.046708 ACATGTGATAAGCAATCCAAACTACTA 58.953 33.333 0.00 0.00 33.22 1.82
5002 5205 7.843490 TGTGATAAGCAATCCAAACTACTAC 57.157 36.000 0.00 0.00 33.22 2.73
5006 5209 9.290988 TGATAAGCAATCCAAACTACTACAAAA 57.709 29.630 0.00 0.00 33.22 2.44
5066 5273 7.219322 AGGAGAAATTGCATTAAACAAAGCTT 58.781 30.769 0.00 0.00 0.00 3.74
5079 5286 6.651755 AAACAAAGCTTGACTGTGAATTTG 57.348 33.333 0.00 5.06 35.35 2.32
5183 5678 5.278266 GGACAATTGACGAATTTTGAGGACA 60.278 40.000 13.59 0.00 28.65 4.02
5207 5702 4.451096 GTCACGACCACAAACTCAATACAT 59.549 41.667 0.00 0.00 0.00 2.29
5286 5799 3.369546 AAAAACTGGGAATTGCGTGAG 57.630 42.857 0.00 0.00 0.00 3.51
5425 5945 1.859841 TACTGGAGCCTCGGAGGACA 61.860 60.000 27.95 19.49 37.67 4.02
5496 6017 0.514691 GGTCTCAGCAAGCTTCAACG 59.485 55.000 0.00 0.00 0.00 4.10
5508 6029 1.798813 GCTTCAACGTTGTAGACCAGG 59.201 52.381 31.47 13.25 0.00 4.45
5523 6044 1.539827 ACCAGGAAAAGGCGAAAATCG 59.460 47.619 0.00 0.00 43.89 3.34
5534 6055 2.933906 GGCGAAAATCGGACTATGTTCA 59.066 45.455 1.64 0.00 40.84 3.18
5550 6071 7.390027 ACTATGTTCATCTAGTCAAGCAGTTT 58.610 34.615 0.00 0.00 0.00 2.66
5625 6146 6.388278 GGCTACAACATAGCTACCATAGTAC 58.612 44.000 0.00 0.00 40.25 2.73
5648 6169 3.557903 ATGTGCACCCTGCTCGCTT 62.558 57.895 15.69 0.00 45.31 4.68
5669 6190 2.948315 TGTTCACATTTGCAGTGTGCTA 59.052 40.909 22.44 13.63 45.31 3.49
5670 6191 3.379688 TGTTCACATTTGCAGTGTGCTAA 59.620 39.130 22.44 13.62 45.31 3.09
5710 6233 7.817962 GTCAAGCAGTTCTATCCAAACTAGTTA 59.182 37.037 8.92 0.00 35.25 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 96 4.062032 GAGGGGGAGGGGGTTTGC 62.062 72.222 0.00 0.00 0.00 3.68
92 97 3.347590 GGAGGGGGAGGGGGTTTG 61.348 72.222 0.00 0.00 0.00 2.93
93 98 3.895600 TGGAGGGGGAGGGGGTTT 61.896 66.667 0.00 0.00 0.00 3.27
94 99 4.695791 GTGGAGGGGGAGGGGGTT 62.696 72.222 0.00 0.00 0.00 4.11
100 105 4.410400 GTTGCCGTGGAGGGGGAG 62.410 72.222 0.00 0.00 41.48 4.30
185 216 1.367848 AGGAGGAGGAAGAAGGGATGT 59.632 52.381 0.00 0.00 0.00 3.06
191 222 0.251634 GGTGCAGGAGGAGGAAGAAG 59.748 60.000 0.00 0.00 0.00 2.85
192 223 1.201429 GGGTGCAGGAGGAGGAAGAA 61.201 60.000 0.00 0.00 0.00 2.52
193 224 1.613630 GGGTGCAGGAGGAGGAAGA 60.614 63.158 0.00 0.00 0.00 2.87
195 226 3.003173 CGGGTGCAGGAGGAGGAA 61.003 66.667 0.00 0.00 0.00 3.36
214 246 1.152333 GCTTCCTTTTGGGTGGGGT 60.152 57.895 0.00 0.00 40.87 4.95
252 284 1.541620 GGGGGAAAGGAGGGACTGT 60.542 63.158 0.00 0.00 41.55 3.55
267 299 4.825679 GGAGGTGGGGAGGAGGGG 62.826 77.778 0.00 0.00 0.00 4.79
430 462 2.913203 CAGGGAGATGGGATAGATGGT 58.087 52.381 0.00 0.00 0.00 3.55
473 505 0.895559 GCTTGGTTGGAGTTGGAGGG 60.896 60.000 0.00 0.00 0.00 4.30
594 627 1.745489 GACCACCCCAAGACGATGC 60.745 63.158 0.00 0.00 0.00 3.91
649 682 8.595362 AGGAAGGGAGTAAAAATAAATCAAGG 57.405 34.615 0.00 0.00 0.00 3.61
725 759 1.801025 GCACTGTTTTCAACAACCGGG 60.801 52.381 6.32 0.00 41.61 5.73
765 799 5.337169 GCTAGAATACCTAGATGCCTTCCTG 60.337 48.000 0.00 0.00 46.17 3.86
766 800 4.775253 GCTAGAATACCTAGATGCCTTCCT 59.225 45.833 0.00 0.00 46.17 3.36
767 801 4.081365 GGCTAGAATACCTAGATGCCTTCC 60.081 50.000 0.00 0.00 46.17 3.46
768 802 4.775253 AGGCTAGAATACCTAGATGCCTTC 59.225 45.833 0.00 0.00 46.17 3.46
770 804 4.412060 AGGCTAGAATACCTAGATGCCT 57.588 45.455 0.00 0.00 46.17 4.75
772 806 4.020662 AGCAAGGCTAGAATACCTAGATGC 60.021 45.833 0.00 0.00 46.17 3.91
773 807 5.736951 AGCAAGGCTAGAATACCTAGATG 57.263 43.478 0.00 0.00 46.17 2.90
774 808 5.604650 ACAAGCAAGGCTAGAATACCTAGAT 59.395 40.000 0.00 0.00 46.17 1.98
775 809 4.962995 ACAAGCAAGGCTAGAATACCTAGA 59.037 41.667 0.00 0.00 46.17 2.43
776 810 5.053145 CACAAGCAAGGCTAGAATACCTAG 58.947 45.833 0.00 0.00 46.05 3.02
777 811 4.469945 ACACAAGCAAGGCTAGAATACCTA 59.530 41.667 0.00 0.00 38.25 3.08
801 835 2.548295 GCAACGAGCGAAACCCCAA 61.548 57.895 0.00 0.00 0.00 4.12
882 918 3.406764 CAAGGAGTTTCAGGAGAACCAG 58.593 50.000 0.00 0.00 38.94 4.00
889 925 1.072331 GAGCACCAAGGAGTTTCAGGA 59.928 52.381 0.00 0.00 0.00 3.86
896 932 0.693049 AATTCGGAGCACCAAGGAGT 59.307 50.000 0.00 0.00 35.59 3.85
921 957 1.981256 GAGGCCAAGACTCCAAAACA 58.019 50.000 5.01 0.00 30.04 2.83
940 976 2.664081 AAGAAGCAGGAGCCCGAGG 61.664 63.158 0.00 0.00 43.56 4.63
943 982 2.437359 CCAAGAAGCAGGAGCCCG 60.437 66.667 0.00 0.00 43.56 6.13
946 985 0.538287 ACCAACCAAGAAGCAGGAGC 60.538 55.000 0.00 0.00 42.56 4.70
955 994 1.812686 CGGAGTCGGACCAACCAAGA 61.813 60.000 4.14 0.00 38.90 3.02
963 1002 2.572284 CTTGGTCGGAGTCGGACC 59.428 66.667 32.55 32.55 37.22 4.46
971 1010 0.321671 CTTCTTGAGCCTTGGTCGGA 59.678 55.000 0.00 0.00 32.15 4.55
972 1011 0.321671 TCTTCTTGAGCCTTGGTCGG 59.678 55.000 0.00 0.00 32.15 4.79
973 1012 2.072298 CTTCTTCTTGAGCCTTGGTCG 58.928 52.381 0.00 0.00 32.15 4.79
974 1013 3.133141 ACTTCTTCTTGAGCCTTGGTC 57.867 47.619 0.00 0.00 0.00 4.02
975 1014 3.217626 CAACTTCTTCTTGAGCCTTGGT 58.782 45.455 0.00 0.00 0.00 3.67
976 1015 2.030451 GCAACTTCTTCTTGAGCCTTGG 60.030 50.000 0.00 0.00 0.00 3.61
983 1022 3.822735 CTCCATTGGCAACTTCTTCTTGA 59.177 43.478 0.00 0.00 37.61 3.02
984 1023 3.613432 GCTCCATTGGCAACTTCTTCTTG 60.613 47.826 0.00 0.00 37.61 3.02
1014 1053 1.492133 AAGCCCAGAACCTGCTGCTA 61.492 55.000 0.00 0.00 37.18 3.49
1017 1056 0.676151 GAGAAGCCCAGAACCTGCTG 60.676 60.000 0.00 0.00 35.08 4.41
1024 1063 1.270907 GTCCAGAGAGAAGCCCAGAA 58.729 55.000 0.00 0.00 0.00 3.02
1136 1175 2.366590 TGACAGATCAGACTTGCACACT 59.633 45.455 0.00 0.00 0.00 3.55
1175 1222 2.477245 TGTACAGGCACATAGGACCAT 58.523 47.619 0.00 0.00 0.00 3.55
1181 1228 4.665212 CAAGCAAATGTACAGGCACATAG 58.335 43.478 16.30 1.72 38.19 2.23
1188 1235 2.297033 ACAAGGCAAGCAAATGTACAGG 59.703 45.455 0.33 0.00 0.00 4.00
1193 1240 2.354003 GGCATACAAGGCAAGCAAATGT 60.354 45.455 0.00 0.00 0.00 2.71
1199 1246 1.140375 GCTGGCATACAAGGCAAGC 59.860 57.895 0.00 0.00 43.93 4.01
1213 1260 2.015587 GCAGAGAAATCAAGAGGCTGG 58.984 52.381 0.00 0.00 0.00 4.85
1214 1261 2.678836 CAGCAGAGAAATCAAGAGGCTG 59.321 50.000 0.00 0.00 41.08 4.85
1217 1264 2.988570 AGCAGCAGAGAAATCAAGAGG 58.011 47.619 0.00 0.00 0.00 3.69
1253 1300 4.062490 AGAAAGGAGAAGTACCAGCCTA 57.938 45.455 0.00 0.00 0.00 3.93
1267 1314 6.180472 CCTAATTAAGTGCTCCAAGAAAGGA 58.820 40.000 0.00 0.00 36.00 3.36
1268 1315 5.163612 GCCTAATTAAGTGCTCCAAGAAAGG 60.164 44.000 0.00 0.00 0.00 3.11
1269 1316 5.163612 GGCCTAATTAAGTGCTCCAAGAAAG 60.164 44.000 0.00 0.00 0.00 2.62
1270 1317 4.705023 GGCCTAATTAAGTGCTCCAAGAAA 59.295 41.667 0.00 0.00 0.00 2.52
1271 1318 4.270008 GGCCTAATTAAGTGCTCCAAGAA 58.730 43.478 0.00 0.00 0.00 2.52
1272 1319 3.371595 GGGCCTAATTAAGTGCTCCAAGA 60.372 47.826 0.84 0.00 0.00 3.02
1273 1320 2.952310 GGGCCTAATTAAGTGCTCCAAG 59.048 50.000 0.84 0.00 0.00 3.61
1274 1321 2.310349 TGGGCCTAATTAAGTGCTCCAA 59.690 45.455 4.53 0.00 0.00 3.53
1275 1322 1.919654 TGGGCCTAATTAAGTGCTCCA 59.080 47.619 4.53 4.18 0.00 3.86
1276 1323 2.576615 CTGGGCCTAATTAAGTGCTCC 58.423 52.381 4.53 2.25 0.00 4.70
1277 1324 1.950216 GCTGGGCCTAATTAAGTGCTC 59.050 52.381 4.53 0.00 0.00 4.26
1278 1325 1.566231 AGCTGGGCCTAATTAAGTGCT 59.434 47.619 4.53 0.00 0.00 4.40
1279 1326 2.058593 AGCTGGGCCTAATTAAGTGC 57.941 50.000 4.53 0.00 0.00 4.40
1280 1327 5.652452 AGTTTTAGCTGGGCCTAATTAAGTG 59.348 40.000 4.53 0.00 0.00 3.16
1281 1328 5.652452 CAGTTTTAGCTGGGCCTAATTAAGT 59.348 40.000 4.53 0.00 33.11 2.24
1282 1329 5.652452 ACAGTTTTAGCTGGGCCTAATTAAG 59.348 40.000 4.53 0.00 40.59 1.85
1283 1330 5.576128 ACAGTTTTAGCTGGGCCTAATTAA 58.424 37.500 4.53 0.00 40.59 1.40
1284 1331 5.187621 ACAGTTTTAGCTGGGCCTAATTA 57.812 39.130 4.53 0.00 40.59 1.40
1285 1332 4.047627 ACAGTTTTAGCTGGGCCTAATT 57.952 40.909 4.53 0.00 40.59 1.40
1286 1333 3.739401 ACAGTTTTAGCTGGGCCTAAT 57.261 42.857 4.53 0.00 40.59 1.73
1287 1334 3.153919 CAACAGTTTTAGCTGGGCCTAA 58.846 45.455 4.53 0.00 40.59 2.69
1288 1335 2.790433 CAACAGTTTTAGCTGGGCCTA 58.210 47.619 4.53 0.00 40.59 3.93
1289 1336 1.620822 CAACAGTTTTAGCTGGGCCT 58.379 50.000 4.53 0.00 40.59 5.19
1290 1337 0.038251 GCAACAGTTTTAGCTGGGCC 60.038 55.000 0.00 0.00 40.59 5.80
1291 1338 0.961753 AGCAACAGTTTTAGCTGGGC 59.038 50.000 0.00 2.32 40.59 5.36
1292 1339 2.030805 GTGAGCAACAGTTTTAGCTGGG 60.031 50.000 0.00 0.00 40.59 4.45
1293 1340 2.880890 AGTGAGCAACAGTTTTAGCTGG 59.119 45.455 0.00 0.00 40.59 4.85
1294 1341 5.180117 ACATAGTGAGCAACAGTTTTAGCTG 59.820 40.000 0.00 0.00 41.92 4.24
1295 1342 5.308825 ACATAGTGAGCAACAGTTTTAGCT 58.691 37.500 0.00 0.00 40.60 3.32
1296 1343 5.613358 ACATAGTGAGCAACAGTTTTAGC 57.387 39.130 0.00 0.00 33.78 3.09
1297 1344 6.959361 ACAACATAGTGAGCAACAGTTTTAG 58.041 36.000 0.00 0.00 33.78 1.85
1298 1345 6.935741 ACAACATAGTGAGCAACAGTTTTA 57.064 33.333 0.00 0.00 33.78 1.52
1299 1346 5.835113 ACAACATAGTGAGCAACAGTTTT 57.165 34.783 0.00 0.00 33.78 2.43
1300 1347 5.221048 GGAACAACATAGTGAGCAACAGTTT 60.221 40.000 0.00 0.00 33.78 2.66
1301 1348 4.275936 GGAACAACATAGTGAGCAACAGTT 59.724 41.667 0.00 0.00 33.78 3.16
1302 1349 3.815401 GGAACAACATAGTGAGCAACAGT 59.185 43.478 0.00 0.00 36.09 3.55
1303 1350 3.814842 TGGAACAACATAGTGAGCAACAG 59.185 43.478 0.00 0.00 31.92 3.16
1304 1351 3.814625 TGGAACAACATAGTGAGCAACA 58.185 40.909 0.00 0.00 31.92 3.33
1305 1352 3.365364 GCTGGAACAACATAGTGAGCAAC 60.365 47.826 0.00 0.00 38.70 4.17
1308 1355 2.704572 AGCTGGAACAACATAGTGAGC 58.295 47.619 0.00 0.00 38.70 4.26
1318 1365 9.056005 CATATAGCATAACTAAAGCTGGAACAA 57.944 33.333 0.00 0.00 39.30 2.83
1331 1378 7.875041 GTCACAATCTGGTCATATAGCATAACT 59.125 37.037 0.00 0.00 34.44 2.24
1338 1385 5.545588 CCAGGTCACAATCTGGTCATATAG 58.454 45.833 0.00 0.00 44.03 1.31
1342 1389 2.795231 CCAGGTCACAATCTGGTCAT 57.205 50.000 0.00 0.00 44.03 3.06
1354 1401 3.519510 AGCTAATAACTCAAGCCAGGTCA 59.480 43.478 0.00 0.00 36.92 4.02
1355 1402 4.143986 AGCTAATAACTCAAGCCAGGTC 57.856 45.455 0.00 0.00 36.92 3.85
1379 1429 9.233232 CATCAGTTAAACCAACAACTACTTTTC 57.767 33.333 0.00 0.00 39.81 2.29
1407 1458 5.760253 CAGAGTAAACTGAAATGACACCAGT 59.240 40.000 0.00 0.00 42.34 4.00
1413 1464 6.526566 ACGAACAGAGTAAACTGAAATGAC 57.473 37.500 0.00 0.00 40.63 3.06
1467 1518 9.403583 GTCTGTCCATAAAGGGTTATTTGATAA 57.596 33.333 0.00 0.00 38.24 1.75
1484 1535 3.988976 AAGTGCATACTGTCTGTCCAT 57.011 42.857 0.00 0.00 37.19 3.41
1493 1544 4.336433 CCTTATGGGTGAAAGTGCATACTG 59.664 45.833 0.00 0.00 37.19 2.74
1494 1545 4.526970 CCTTATGGGTGAAAGTGCATACT 58.473 43.478 0.00 0.00 39.32 2.12
1509 1560 8.328758 TGTAAAAGATCCCATATAGCCTTATGG 58.671 37.037 13.30 13.30 45.57 2.74
1510 1561 9.911788 ATGTAAAAGATCCCATATAGCCTTATG 57.088 33.333 0.00 0.00 0.00 1.90
1513 1564 9.911788 CATATGTAAAAGATCCCATATAGCCTT 57.088 33.333 0.00 0.00 31.18 4.35
1514 1565 7.995488 GCATATGTAAAAGATCCCATATAGCCT 59.005 37.037 4.29 0.00 31.18 4.58
1515 1566 7.995488 AGCATATGTAAAAGATCCCATATAGCC 59.005 37.037 4.29 0.00 31.79 3.93
1516 1567 8.970859 AGCATATGTAAAAGATCCCATATAGC 57.029 34.615 4.29 0.00 31.18 2.97
1519 1570 9.812347 TTGAAGCATATGTAAAAGATCCCATAT 57.188 29.630 4.29 0.00 32.21 1.78
1520 1571 9.066892 GTTGAAGCATATGTAAAAGATCCCATA 57.933 33.333 4.29 0.00 0.00 2.74
1521 1572 7.014615 GGTTGAAGCATATGTAAAAGATCCCAT 59.985 37.037 4.29 0.00 0.00 4.00
1522 1573 6.321181 GGTTGAAGCATATGTAAAAGATCCCA 59.679 38.462 4.29 0.00 0.00 4.37
1523 1574 6.547510 AGGTTGAAGCATATGTAAAAGATCCC 59.452 38.462 4.29 0.00 0.00 3.85
1524 1575 7.573968 AGGTTGAAGCATATGTAAAAGATCC 57.426 36.000 4.29 0.00 0.00 3.36
1550 1601 7.978099 ATAGCCTTATGGGTGAAAGATTTTT 57.022 32.000 9.50 0.00 44.81 1.94
1551 1602 9.082313 CATATAGCCTTATGGGTGAAAGATTTT 57.918 33.333 9.50 0.00 44.81 1.82
1552 1603 7.671398 CCATATAGCCTTATGGGTGAAAGATTT 59.329 37.037 9.50 0.00 43.30 2.17
1553 1604 7.177878 CCATATAGCCTTATGGGTGAAAGATT 58.822 38.462 9.50 0.00 43.30 2.40
1554 1605 6.725364 CCATATAGCCTTATGGGTGAAAGAT 58.275 40.000 9.50 0.00 43.30 2.40
1555 1606 6.126863 CCATATAGCCTTATGGGTGAAAGA 57.873 41.667 9.50 0.00 43.30 2.52
1574 1625 9.066892 GTTGAAGCATATGTAAAAGATCCCATA 57.933 33.333 4.29 0.00 0.00 2.74
1628 1679 6.734137 TGACAAAACAAGCACGAGATATTTT 58.266 32.000 0.00 0.00 0.00 1.82
1632 1683 4.627058 TCTGACAAAACAAGCACGAGATA 58.373 39.130 0.00 0.00 0.00 1.98
1635 1686 3.063997 AGTTCTGACAAAACAAGCACGAG 59.936 43.478 0.00 0.00 0.00 4.18
1637 1688 3.405170 AGTTCTGACAAAACAAGCACG 57.595 42.857 0.00 0.00 0.00 5.34
1638 1689 4.201910 TGCTAGTTCTGACAAAACAAGCAC 60.202 41.667 0.00 0.00 0.00 4.40
1639 1690 3.944650 TGCTAGTTCTGACAAAACAAGCA 59.055 39.130 0.00 0.00 0.00 3.91
1640 1691 4.552166 TGCTAGTTCTGACAAAACAAGC 57.448 40.909 0.00 0.00 0.00 4.01
1641 1692 6.304356 TGATGCTAGTTCTGACAAAACAAG 57.696 37.500 0.00 0.00 0.00 3.16
1642 1693 6.691754 TTGATGCTAGTTCTGACAAAACAA 57.308 33.333 0.00 0.00 0.00 2.83
1643 1694 6.882610 ATTGATGCTAGTTCTGACAAAACA 57.117 33.333 0.00 0.00 0.00 2.83
1644 1695 6.583806 CCAATTGATGCTAGTTCTGACAAAAC 59.416 38.462 7.12 0.00 0.00 2.43
1645 1696 6.489700 TCCAATTGATGCTAGTTCTGACAAAA 59.510 34.615 7.12 0.00 0.00 2.44
1646 1697 6.003326 TCCAATTGATGCTAGTTCTGACAAA 58.997 36.000 7.12 0.00 0.00 2.83
1647 1698 5.559770 TCCAATTGATGCTAGTTCTGACAA 58.440 37.500 7.12 0.00 0.00 3.18
1648 1699 5.164620 TCCAATTGATGCTAGTTCTGACA 57.835 39.130 7.12 0.00 0.00 3.58
1649 1700 6.150140 AGTTTCCAATTGATGCTAGTTCTGAC 59.850 38.462 7.12 0.00 0.00 3.51
1671 1722 9.050601 CAAAGAGAACATTTTCTGAGACTAGTT 57.949 33.333 0.00 0.00 42.53 2.24
1672 1723 8.207545 ACAAAGAGAACATTTTCTGAGACTAGT 58.792 33.333 0.00 0.00 42.53 2.57
1675 1726 7.278875 AGACAAAGAGAACATTTTCTGAGACT 58.721 34.615 0.00 0.00 42.53 3.24
1676 1727 7.489574 AGACAAAGAGAACATTTTCTGAGAC 57.510 36.000 0.00 0.00 42.53 3.36
1677 1728 6.422100 CGAGACAAAGAGAACATTTTCTGAGA 59.578 38.462 0.00 0.00 42.53 3.27
1678 1729 6.201806 ACGAGACAAAGAGAACATTTTCTGAG 59.798 38.462 0.00 0.00 42.53 3.35
1755 1812 4.035208 ACTGAACACTTCGTGGTTTCATTC 59.965 41.667 0.00 0.00 37.94 2.67
1766 1823 6.590292 AGGTCAAATATGTACTGAACACTTCG 59.410 38.462 0.58 0.00 42.09 3.79
1785 1844 3.576078 ACAACAGATCCACAAGGTCAA 57.424 42.857 0.00 0.00 35.89 3.18
1799 1858 7.432252 ACTGAAAGCTTTCGAAAAATACAACAG 59.568 33.333 29.03 19.78 40.01 3.16
1801 1860 7.679659 ACTGAAAGCTTTCGAAAAATACAAC 57.320 32.000 29.03 6.71 40.01 3.32
1806 1865 8.424274 AATTGAACTGAAAGCTTTCGAAAAAT 57.576 26.923 29.03 21.36 40.01 1.82
1808 1867 8.967218 CATAATTGAACTGAAAGCTTTCGAAAA 58.033 29.630 29.03 19.76 40.01 2.29
1827 1886 4.142622 ACACATCAACAGCCGACATAATTG 60.143 41.667 0.00 0.00 0.00 2.32
1838 1897 2.710220 TGCATTCACACATCAACAGC 57.290 45.000 0.00 0.00 0.00 4.40
1860 1931 5.211174 TCATTTGCAAATCCATGTGTGAA 57.789 34.783 21.70 0.00 0.00 3.18
1861 1932 4.281435 ACTCATTTGCAAATCCATGTGTGA 59.719 37.500 21.70 13.61 0.00 3.58
1862 1933 4.387559 CACTCATTTGCAAATCCATGTGTG 59.612 41.667 21.70 21.64 35.79 3.82
1863 1934 4.281435 TCACTCATTTGCAAATCCATGTGT 59.719 37.500 21.70 15.34 0.00 3.72
1864 1935 4.624024 GTCACTCATTTGCAAATCCATGTG 59.376 41.667 21.70 22.69 0.00 3.21
1865 1936 4.281435 TGTCACTCATTTGCAAATCCATGT 59.719 37.500 21.70 14.08 0.00 3.21
1883 1954 3.826157 TGATCCCCATGAAACTTTGTCAC 59.174 43.478 0.00 0.00 0.00 3.67
1889 1960 6.197168 ACATACATTGATCCCCATGAAACTT 58.803 36.000 0.00 0.00 0.00 2.66
2014 2085 6.831976 AGTTGATTATATGAAGTGAGGGGAC 58.168 40.000 0.00 0.00 0.00 4.46
2034 2105 3.733337 AGCAGAACACCTGTTAGAGTTG 58.267 45.455 0.00 0.00 44.71 3.16
2035 2106 5.482908 CATAGCAGAACACCTGTTAGAGTT 58.517 41.667 0.00 0.00 44.71 3.01
2036 2107 4.621747 GCATAGCAGAACACCTGTTAGAGT 60.622 45.833 0.00 0.00 44.71 3.24
2037 2108 3.868077 GCATAGCAGAACACCTGTTAGAG 59.132 47.826 0.00 0.00 44.71 2.43
2164 2236 6.203723 GCTAAGGGTGAAACTGCAGAATATAG 59.796 42.308 23.35 10.31 36.74 1.31
2168 2240 3.084786 GCTAAGGGTGAAACTGCAGAAT 58.915 45.455 23.35 8.38 36.74 2.40
2203 2275 6.989759 ACACATAATATGAGTATTTGGACGCA 59.010 34.615 7.33 0.00 32.26 5.24
2230 2302 4.709397 TGGTTCTGCCTTTGAGAAAAAGAA 59.291 37.500 0.00 0.00 38.35 2.52
2310 2382 5.827797 GGATGCCAACTATCAACCATAAGAA 59.172 40.000 0.00 0.00 0.00 2.52
2457 2532 2.971330 ACAAAGGAATGGCATGTTTCCA 59.029 40.909 18.02 9.32 43.21 3.53
2458 2533 3.683365 ACAAAGGAATGGCATGTTTCC 57.317 42.857 9.82 9.82 41.46 3.13
2548 2628 3.450904 ACTCCCAGTAATAGTGCTCCAA 58.549 45.455 0.00 0.00 0.00 3.53
2799 2948 5.301835 AGAGATGTGCTGCCTAAATACAT 57.698 39.130 0.00 0.00 34.91 2.29
3208 3378 4.861102 AAGGATATTGCCTAGCATTTGC 57.139 40.909 0.00 0.00 38.76 3.68
3259 3431 6.120905 CAGAGGATTCCTGAGAAATCAACAT 58.879 40.000 10.74 0.00 35.09 2.71
3387 3564 6.282167 CAAAGGCATGCAATATGGTTTATGA 58.718 36.000 21.36 0.00 0.00 2.15
3450 3627 9.319143 CGATATTTCAACCTAGAGAGTTCAAAT 57.681 33.333 0.00 0.00 0.00 2.32
3513 3691 3.616076 CGAATGAGCCTGGCTTAGATAGG 60.616 52.174 24.26 5.74 39.88 2.57
3643 3822 3.666345 ATGACGTAAGGAGGGAGTACT 57.334 47.619 0.00 0.00 46.39 2.73
3644 3823 4.732672 AAATGACGTAAGGAGGGAGTAC 57.267 45.455 0.00 0.00 46.39 2.73
3645 3824 6.438425 ACTTTAAATGACGTAAGGAGGGAGTA 59.562 38.462 0.00 0.00 46.39 2.59
3646 3825 5.247792 ACTTTAAATGACGTAAGGAGGGAGT 59.752 40.000 0.00 0.00 46.39 3.85
3647 3826 5.731591 ACTTTAAATGACGTAAGGAGGGAG 58.268 41.667 0.00 0.00 46.39 4.30
3648 3827 5.750352 ACTTTAAATGACGTAAGGAGGGA 57.250 39.130 0.00 0.00 46.39 4.20
3649 3828 7.101700 ACTAACTTTAAATGACGTAAGGAGGG 58.898 38.462 0.00 0.00 46.39 4.30
3650 3829 9.080915 GTACTAACTTTAAATGACGTAAGGAGG 57.919 37.037 0.00 0.00 46.39 4.30
3651 3830 9.630098 TGTACTAACTTTAAATGACGTAAGGAG 57.370 33.333 0.00 0.00 46.39 3.69
3652 3831 9.979578 TTGTACTAACTTTAAATGACGTAAGGA 57.020 29.630 0.00 0.00 46.39 3.36
3657 3836 9.925268 CAACTTTGTACTAACTTTAAATGACGT 57.075 29.630 0.00 0.00 0.00 4.34
3664 3843 9.880157 AGTGTCTCAACTTTGTACTAACTTTAA 57.120 29.630 0.00 0.00 0.00 1.52
3665 3844 9.880157 AAGTGTCTCAACTTTGTACTAACTTTA 57.120 29.630 0.00 0.00 37.05 1.85
3666 3845 8.788325 AAGTGTCTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
3672 3851 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
3673 3852 7.860872 CCCAAAATAAGTGTCTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
3674 3853 7.013846 CCCCAAAATAAGTGTCTCAACTTTGTA 59.986 37.037 0.00 0.00 40.77 2.41
3675 3854 6.183360 CCCCAAAATAAGTGTCTCAACTTTGT 60.183 38.462 0.00 0.00 40.77 2.83
3676 3855 6.215845 CCCCAAAATAAGTGTCTCAACTTTG 58.784 40.000 0.00 0.00 40.77 2.77
3677 3856 5.221441 GCCCCAAAATAAGTGTCTCAACTTT 60.221 40.000 0.00 0.00 40.77 2.66
3678 3857 4.280929 GCCCCAAAATAAGTGTCTCAACTT 59.719 41.667 0.00 0.00 42.89 2.66
3679 3858 3.826729 GCCCCAAAATAAGTGTCTCAACT 59.173 43.478 0.00 0.00 0.00 3.16
3680 3859 3.365969 CGCCCCAAAATAAGTGTCTCAAC 60.366 47.826 0.00 0.00 0.00 3.18
3681 3860 2.817258 CGCCCCAAAATAAGTGTCTCAA 59.183 45.455 0.00 0.00 0.00 3.02
3682 3861 2.432444 CGCCCCAAAATAAGTGTCTCA 58.568 47.619 0.00 0.00 0.00 3.27
3683 3862 1.743394 CCGCCCCAAAATAAGTGTCTC 59.257 52.381 0.00 0.00 0.00 3.36
3684 3863 1.615919 CCCGCCCCAAAATAAGTGTCT 60.616 52.381 0.00 0.00 0.00 3.41
3685 3864 0.815095 CCCGCCCCAAAATAAGTGTC 59.185 55.000 0.00 0.00 0.00 3.67
3686 3865 0.613572 CCCCGCCCCAAAATAAGTGT 60.614 55.000 0.00 0.00 0.00 3.55
3687 3866 1.326951 CCCCCGCCCCAAAATAAGTG 61.327 60.000 0.00 0.00 0.00 3.16
3688 3867 1.001120 CCCCCGCCCCAAAATAAGT 59.999 57.895 0.00 0.00 0.00 2.24
3689 3868 3.948702 CCCCCGCCCCAAAATAAG 58.051 61.111 0.00 0.00 0.00 1.73
3703 3882 1.771255 AGCATTGTGATCTACTCCCCC 59.229 52.381 0.00 0.00 0.00 5.40
3704 3883 3.135530 AGAAGCATTGTGATCTACTCCCC 59.864 47.826 0.00 0.00 0.00 4.81
3705 3884 4.125703 CAGAAGCATTGTGATCTACTCCC 58.874 47.826 0.00 0.00 42.84 4.30
3706 3885 3.559242 GCAGAAGCATTGTGATCTACTCC 59.441 47.826 0.00 0.00 42.84 3.85
3707 3886 3.244814 CGCAGAAGCATTGTGATCTACTC 59.755 47.826 0.00 0.00 42.84 2.59
3751 3930 5.986135 GTGCTATTCCTATTGGACTGTACAG 59.014 44.000 21.44 21.44 43.06 2.74
3836 4015 9.284968 CCCCGATTCTGTAAGTTCAAATATTAT 57.715 33.333 0.00 0.00 33.76 1.28
3837 4016 7.227910 GCCCCGATTCTGTAAGTTCAAATATTA 59.772 37.037 0.00 0.00 33.76 0.98
3838 4017 6.039382 GCCCCGATTCTGTAAGTTCAAATATT 59.961 38.462 0.00 0.00 33.76 1.28
3842 4021 3.078837 GCCCCGATTCTGTAAGTTCAAA 58.921 45.455 0.00 0.00 33.76 2.69
3862 4044 5.924475 AACAGCTACAATCGGTTATATGC 57.076 39.130 0.00 0.00 0.00 3.14
3933 4115 3.815809 TCACTCCTTCGTTCACCAAAAT 58.184 40.909 0.00 0.00 0.00 1.82
3944 4126 6.368791 TGTCTTTCATTGTTATCACTCCTTCG 59.631 38.462 0.00 0.00 0.00 3.79
4019 4201 7.067008 GCATTAAGGATTACATATGCCGGTAAT 59.933 37.037 1.90 0.00 41.53 1.89
4055 4237 6.458888 GGCCATTAGAGTTAGATTTTGCAGAC 60.459 42.308 0.00 0.00 0.00 3.51
4112 4294 3.071892 CCCTTCTGGTAGTGGTGTAACAA 59.928 47.826 0.00 0.00 39.98 2.83
4161 4345 6.097270 CACCATCACCTGAATATGTTCCAAAT 59.903 38.462 0.00 0.00 33.26 2.32
4485 4669 7.926674 TGCAATCTTTGATGATACAGAGAAA 57.073 32.000 0.00 0.00 35.31 2.52
4552 4736 3.247648 ACTTCACAAGAACATCGAAACGG 59.752 43.478 0.00 0.00 0.00 4.44
4579 4763 1.137825 CCTCTCGAGCTCCGACAAC 59.862 63.158 7.81 0.00 43.23 3.32
4613 4797 1.381599 GGGATCCATTGGCAGGCAA 60.382 57.895 15.23 12.53 0.00 4.52
4614 4798 2.165643 TTGGGATCCATTGGCAGGCA 62.166 55.000 15.23 0.00 31.53 4.75
4750 4934 1.291132 GCCAAAGACTCGGCTATCAC 58.709 55.000 8.32 0.00 45.29 3.06
4758 4942 3.067106 ACAATACACAGCCAAAGACTCG 58.933 45.455 0.00 0.00 0.00 4.18
4769 4955 5.916320 TGTCAACTACGTACACAATACACAG 59.084 40.000 0.00 0.00 0.00 3.66
4770 4956 5.829829 TGTCAACTACGTACACAATACACA 58.170 37.500 0.00 0.00 0.00 3.72
4771 4957 6.614999 GCTTGTCAACTACGTACACAATACAC 60.615 42.308 0.00 0.00 0.00 2.90
4780 4966 5.039480 TCACTAGCTTGTCAACTACGTAC 57.961 43.478 0.00 0.00 0.00 3.67
4781 4967 4.999311 TCTCACTAGCTTGTCAACTACGTA 59.001 41.667 0.00 0.00 0.00 3.57
4782 4968 3.819337 TCTCACTAGCTTGTCAACTACGT 59.181 43.478 0.00 0.00 0.00 3.57
4783 4969 4.154375 TCTCTCACTAGCTTGTCAACTACG 59.846 45.833 0.00 0.00 0.00 3.51
4788 4974 3.230976 TGGTCTCTCACTAGCTTGTCAA 58.769 45.455 0.00 0.00 0.00 3.18
4845 5046 2.924290 CTCAAGCTACACCTAAGAACGC 59.076 50.000 0.00 0.00 0.00 4.84
4958 5159 3.558418 ACATGTCACGTGGTAGTTCAAAC 59.442 43.478 17.00 3.40 0.00 2.93
5009 5212 7.857734 TCAGAGACAAGTTCAAATGTTTACA 57.142 32.000 0.00 0.00 0.00 2.41
5012 5215 9.288576 TGATATCAGAGACAAGTTCAAATGTTT 57.711 29.630 0.00 0.00 0.00 2.83
5013 5216 8.725148 GTGATATCAGAGACAAGTTCAAATGTT 58.275 33.333 5.42 0.00 0.00 2.71
5014 5217 7.063898 CGTGATATCAGAGACAAGTTCAAATGT 59.936 37.037 5.42 0.00 0.00 2.71
5066 5273 2.550606 GCCGGTAACAAATTCACAGTCA 59.449 45.455 1.90 0.00 0.00 3.41
5079 5286 4.087510 GTGGAACAAATTAGCCGGTAAC 57.912 45.455 1.90 0.00 44.16 2.50
5183 5678 2.684001 TTGAGTTTGTGGTCGTGACT 57.316 45.000 0.00 0.00 0.00 3.41
5207 5702 2.910688 GTGAAGTTCACACCTCCAGA 57.089 50.000 27.37 0.00 46.22 3.86
5425 5945 3.257873 CACAGAGGAGTGACATCAACTCT 59.742 47.826 3.80 6.31 42.05 3.24
5496 6017 1.804748 CGCCTTTTCCTGGTCTACAAC 59.195 52.381 0.00 0.00 0.00 3.32
5508 6029 4.094442 ACATAGTCCGATTTTCGCCTTTTC 59.906 41.667 0.00 0.00 38.82 2.29
5523 6044 5.907207 TGCTTGACTAGATGAACATAGTCC 58.093 41.667 12.31 2.54 44.78 3.85
5534 6055 8.635765 TTTTGGATAAAACTGCTTGACTAGAT 57.364 30.769 0.00 0.00 31.13 1.98
5550 6071 5.645624 CATGCACGGTAACATTTTGGATAA 58.354 37.500 0.00 0.00 0.00 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.