Multiple sequence alignment - TraesCS2B01G360700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G360700 chr2B 100.000 3465 0 0 1 3465 513694342 513697806 0.000000e+00 6399.0
1 TraesCS2B01G360700 chr2B 88.275 597 48 10 700 1287 513680557 513681140 0.000000e+00 695.0
2 TraesCS2B01G360700 chr2B 81.870 877 95 31 2000 2831 513681257 513682114 0.000000e+00 680.0
3 TraesCS2B01G360700 chr2B 84.839 653 37 32 865 1478 513706416 513707045 4.950000e-168 601.0
4 TraesCS2B01G360700 chr2B 82.505 463 51 17 2382 2833 513708568 513709011 2.520000e-101 379.0
5 TraesCS2B01G360700 chr2B 92.553 94 7 0 738 831 513706317 513706410 6.030000e-28 135.0
6 TraesCS2B01G360700 chr2A 92.518 1684 80 18 1791 3460 551462473 551460822 0.000000e+00 2370.0
7 TraesCS2B01G360700 chr2A 90.744 605 51 3 2659 3263 551467567 551466968 0.000000e+00 802.0
8 TraesCS2B01G360700 chr2A 87.360 712 45 17 736 1413 551469470 551468770 0.000000e+00 774.0
9 TraesCS2B01G360700 chr2A 88.191 669 34 26 737 1393 551463381 551462746 0.000000e+00 756.0
10 TraesCS2B01G360700 chr2A 83.470 853 99 26 2000 2831 551481639 551480808 0.000000e+00 756.0
11 TraesCS2B01G360700 chr2A 90.351 570 29 7 919 1478 551451640 551451087 0.000000e+00 725.0
12 TraesCS2B01G360700 chr2A 88.264 605 44 17 700 1287 551482720 551482126 0.000000e+00 699.0
13 TraesCS2B01G360700 chr2A 88.850 574 22 14 2195 2728 551446910 551446339 0.000000e+00 667.0
14 TraesCS2B01G360700 chr2A 92.517 441 23 2 2169 2599 551468009 551467569 1.060000e-174 623.0
15 TraesCS2B01G360700 chr2A 82.797 715 66 19 2165 2833 551372375 551371672 1.390000e-163 586.0
16 TraesCS2B01G360700 chr2A 84.691 614 40 22 1591 2184 551468608 551468029 6.490000e-157 564.0
17 TraesCS2B01G360700 chr2A 83.664 655 47 27 865 1481 551373509 551372877 2.340000e-156 562.0
18 TraesCS2B01G360700 chr2A 86.571 350 17 11 1820 2152 551450691 551450355 3.290000e-95 359.0
19 TraesCS2B01G360700 chr2A 93.889 180 10 1 2914 3092 551377423 551377244 1.580000e-68 270.0
20 TraesCS2B01G360700 chr2A 92.000 175 7 5 1469 1637 551462644 551462471 4.470000e-59 239.0
21 TraesCS2B01G360700 chr2A 96.522 115 4 0 2777 2891 551379096 551378982 1.270000e-44 191.0
22 TraesCS2B01G360700 chr2A 98.148 54 1 0 742 795 551451796 551451743 1.020000e-15 95.3
23 TraesCS2B01G360700 chr2A 96.491 57 2 0 1422 1478 551462740 551462684 1.020000e-15 95.3
24 TraesCS2B01G360700 chr2A 98.113 53 1 0 2900 2952 551377476 551377424 3.680000e-15 93.5
25 TraesCS2B01G360700 chr2A 100.000 37 0 0 1791 1827 551450734 551450698 6.210000e-08 69.4
26 TraesCS2B01G360700 chr2D 85.986 1156 83 28 1712 2833 435224153 435225263 0.000000e+00 1164.0
27 TraesCS2B01G360700 chr2D 86.219 1103 98 23 312 1393 435221234 435222303 0.000000e+00 1146.0
28 TraesCS2B01G360700 chr2D 91.163 679 36 12 2365 3025 435325704 435326376 0.000000e+00 900.0
29 TraesCS2B01G360700 chr2D 83.066 874 92 26 2000 2831 435197230 435198089 0.000000e+00 743.0
30 TraesCS2B01G360700 chr2D 95.022 462 19 3 1920 2379 435308301 435308760 0.000000e+00 723.0
31 TraesCS2B01G360700 chr2D 90.583 446 30 3 3020 3465 435326636 435327069 6.450000e-162 580.0
32 TraesCS2B01G360700 chr2D 85.210 595 36 14 700 1287 435196567 435197116 6.490000e-157 564.0
33 TraesCS2B01G360700 chr2D 94.190 327 19 0 3138 3464 435225789 435226115 1.860000e-137 499.0
34 TraesCS2B01G360700 chr2D 90.823 316 28 1 2831 3146 435225317 435225631 4.130000e-114 422.0
35 TraesCS2B01G360700 chr2D 95.408 196 7 2 1205 1398 435275714 435275909 9.340000e-81 311.0
36 TraesCS2B01G360700 chr2D 83.152 184 30 1 28 211 435220699 435220881 2.140000e-37 167.0
37 TraesCS2B01G360700 chr2D 95.349 86 4 0 1393 1478 435290249 435290334 1.680000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G360700 chr2B 513694342 513697806 3464 False 6399.000000 6399 100.000000 1 3465 1 chr2B.!!$F1 3464
1 TraesCS2B01G360700 chr2B 513680557 513682114 1557 False 687.500000 695 85.072500 700 2831 2 chr2B.!!$F2 2131
2 TraesCS2B01G360700 chr2B 513706317 513709011 2694 False 371.666667 601 86.632333 738 2833 3 chr2B.!!$F3 2095
3 TraesCS2B01G360700 chr2A 551460822 551469470 8648 True 777.912500 2370 90.564000 736 3460 8 chr2A.!!$R3 2724
4 TraesCS2B01G360700 chr2A 551480808 551482720 1912 True 727.500000 756 85.867000 700 2831 2 chr2A.!!$R4 2131
5 TraesCS2B01G360700 chr2A 551446339 551451796 5457 True 383.140000 725 92.784000 742 2728 5 chr2A.!!$R2 1986
6 TraesCS2B01G360700 chr2A 551371672 551379096 7424 True 340.500000 586 90.997000 865 3092 5 chr2A.!!$R1 2227
7 TraesCS2B01G360700 chr2D 435325704 435327069 1365 False 740.000000 900 90.873000 2365 3465 2 chr2D.!!$F6 1100
8 TraesCS2B01G360700 chr2D 435220699 435226115 5416 False 679.600000 1164 88.074000 28 3464 5 chr2D.!!$F5 3436
9 TraesCS2B01G360700 chr2D 435196567 435198089 1522 False 653.500000 743 84.138000 700 2831 2 chr2D.!!$F4 2131

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
809 1066 0.109964 TTTGACAAATAGCCGCACGC 60.110 50.0 0.0 0.0 37.98 5.34 F
982 5825 0.184933 AGAGCCATCCGAGCTAGACT 59.815 55.0 0.0 0.0 41.75 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2335 19236 0.178858 TGTCCCTCACCCCAACCATA 60.179 55.0 0.0 0.0 0.00 2.74 R
2912 19959 0.657312 TCGCAAGCAACTCAAGTGTG 59.343 50.0 0.0 0.0 37.18 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 6.731292 ACTCTAGAAAAATTGGGTTTTGCT 57.269 33.333 0.00 0.00 45.65 3.91
28 29 8.245195 ACTCTAGAAAAATTGGGTTTTGCTAA 57.755 30.769 0.00 0.00 43.92 3.09
30 31 9.143631 CTCTAGAAAAATTGGGTTTTGCTAATG 57.856 33.333 0.00 0.00 43.92 1.90
31 32 8.646900 TCTAGAAAAATTGGGTTTTGCTAATGT 58.353 29.630 0.00 0.00 43.92 2.71
32 33 9.271828 CTAGAAAAATTGGGTTTTGCTAATGTT 57.728 29.630 3.36 0.00 43.92 2.71
33 34 8.153479 AGAAAAATTGGGTTTTGCTAATGTTC 57.847 30.769 0.00 0.00 42.69 3.18
34 35 7.772757 AGAAAAATTGGGTTTTGCTAATGTTCA 59.227 29.630 0.00 0.00 42.69 3.18
35 36 7.872113 AAAATTGGGTTTTGCTAATGTTCAA 57.128 28.000 0.00 0.00 38.56 2.69
36 37 7.872113 AAATTGGGTTTTGCTAATGTTCAAA 57.128 28.000 0.00 0.00 0.00 2.69
37 38 7.872113 AATTGGGTTTTGCTAATGTTCAAAA 57.128 28.000 0.00 0.00 39.13 2.44
38 39 6.917217 TTGGGTTTTGCTAATGTTCAAAAG 57.083 33.333 1.00 0.00 41.20 2.27
39 40 6.227298 TGGGTTTTGCTAATGTTCAAAAGA 57.773 33.333 1.00 0.00 41.20 2.52
40 41 6.825610 TGGGTTTTGCTAATGTTCAAAAGAT 58.174 32.000 1.00 0.00 41.20 2.40
43 44 7.095649 GGGTTTTGCTAATGTTCAAAAGATGTC 60.096 37.037 1.00 0.00 41.20 3.06
44 45 7.358352 GGTTTTGCTAATGTTCAAAAGATGTCG 60.358 37.037 1.00 0.00 41.20 4.35
45 46 5.295431 TGCTAATGTTCAAAAGATGTCGG 57.705 39.130 0.00 0.00 0.00 4.79
46 47 4.098416 GCTAATGTTCAAAAGATGTCGGC 58.902 43.478 0.00 0.00 0.00 5.54
47 48 3.575965 AATGTTCAAAAGATGTCGGCC 57.424 42.857 0.00 0.00 0.00 6.13
48 49 1.974265 TGTTCAAAAGATGTCGGCCA 58.026 45.000 2.24 0.00 0.00 5.36
50 51 3.680490 TGTTCAAAAGATGTCGGCCATA 58.320 40.909 2.24 0.00 32.56 2.74
51 52 3.689161 TGTTCAAAAGATGTCGGCCATAG 59.311 43.478 2.24 0.00 32.56 2.23
52 53 3.627395 TCAAAAGATGTCGGCCATAGT 57.373 42.857 2.24 0.00 32.56 2.12
53 54 3.950397 TCAAAAGATGTCGGCCATAGTT 58.050 40.909 2.24 0.00 32.56 2.24
54 55 3.938963 TCAAAAGATGTCGGCCATAGTTC 59.061 43.478 2.24 0.00 32.56 3.01
56 57 1.112113 AGATGTCGGCCATAGTTCGT 58.888 50.000 2.24 0.00 32.56 3.85
65 66 0.999406 CCATAGTTCGTGAAGCACCG 59.001 55.000 0.00 0.00 0.00 4.94
98 99 1.741732 GCATCTCTGTGCCTCACGATT 60.742 52.381 0.00 0.00 39.18 3.34
99 100 1.931841 CATCTCTGTGCCTCACGATTG 59.068 52.381 0.00 0.00 37.14 2.67
137 138 4.057428 GCGTCGAGTGCAGGGACT 62.057 66.667 0.00 0.00 43.88 3.85
139 140 2.336478 CGTCGAGTGCAGGGACTCT 61.336 63.158 17.07 0.00 40.33 3.24
140 141 1.214062 GTCGAGTGCAGGGACTCTG 59.786 63.158 17.07 11.37 46.03 3.35
141 142 1.979155 TCGAGTGCAGGGACTCTGG 60.979 63.158 17.07 4.80 43.54 3.86
143 144 2.527624 AGTGCAGGGACTCTGGCA 60.528 61.111 4.07 0.00 43.54 4.92
173 174 2.278857 CGAGCGACCCGGAATCAG 60.279 66.667 0.73 0.00 0.00 2.90
189 190 0.594602 TCAGGGACTACACGACAACG 59.405 55.000 0.00 0.00 41.27 4.10
194 195 2.608752 GGGACTACACGACAACGATGTT 60.609 50.000 0.00 0.00 40.74 2.71
206 207 1.866015 ACGATGTTCCAGATGAGGGA 58.134 50.000 0.00 0.00 0.00 4.20
212 213 2.028112 TGTTCCAGATGAGGGAAGTTCG 60.028 50.000 0.00 0.00 44.68 3.95
213 214 2.231716 TCCAGATGAGGGAAGTTCGA 57.768 50.000 0.00 0.00 0.00 3.71
215 216 1.137872 CCAGATGAGGGAAGTTCGAGG 59.862 57.143 0.00 0.00 0.00 4.63
216 217 1.827969 CAGATGAGGGAAGTTCGAGGT 59.172 52.381 0.00 0.00 0.00 3.85
217 218 2.234908 CAGATGAGGGAAGTTCGAGGTT 59.765 50.000 0.00 0.00 0.00 3.50
218 219 2.234908 AGATGAGGGAAGTTCGAGGTTG 59.765 50.000 0.00 0.00 0.00 3.77
219 220 1.712056 TGAGGGAAGTTCGAGGTTGA 58.288 50.000 0.00 0.00 0.00 3.18
221 222 1.343465 GAGGGAAGTTCGAGGTTGACA 59.657 52.381 0.00 0.00 0.00 3.58
222 223 1.344763 AGGGAAGTTCGAGGTTGACAG 59.655 52.381 0.00 0.00 0.00 3.51
223 224 1.070289 GGGAAGTTCGAGGTTGACAGT 59.930 52.381 0.00 0.00 0.00 3.55
227 228 1.137513 GTTCGAGGTTGACAGTTCGG 58.862 55.000 5.77 0.00 34.08 4.30
228 229 1.034356 TTCGAGGTTGACAGTTCGGA 58.966 50.000 5.77 0.00 34.08 4.55
230 231 1.067846 TCGAGGTTGACAGTTCGGATG 60.068 52.381 5.77 0.00 34.08 3.51
232 233 0.687354 AGGTTGACAGTTCGGATGCT 59.313 50.000 0.00 0.00 0.00 3.79
234 235 1.197721 GGTTGACAGTTCGGATGCTTG 59.802 52.381 0.00 0.00 0.00 4.01
235 236 1.197721 GTTGACAGTTCGGATGCTTGG 59.802 52.381 0.00 0.00 0.00 3.61
236 237 0.321564 TGACAGTTCGGATGCTTGGG 60.322 55.000 0.00 0.00 0.00 4.12
238 239 1.750399 CAGTTCGGATGCTTGGGGG 60.750 63.158 0.00 0.00 0.00 5.40
239 240 1.923395 AGTTCGGATGCTTGGGGGA 60.923 57.895 0.00 0.00 0.00 4.81
240 241 1.001393 GTTCGGATGCTTGGGGGAA 60.001 57.895 0.00 0.00 0.00 3.97
241 242 1.032114 GTTCGGATGCTTGGGGGAAG 61.032 60.000 0.00 0.00 34.41 3.46
242 243 2.124151 CGGATGCTTGGGGGAAGG 60.124 66.667 0.00 0.00 31.56 3.46
243 244 2.280079 GGATGCTTGGGGGAAGGG 59.720 66.667 0.00 0.00 31.56 3.95
244 245 2.280079 GATGCTTGGGGGAAGGGG 59.720 66.667 0.00 0.00 31.56 4.79
245 246 3.358824 ATGCTTGGGGGAAGGGGG 61.359 66.667 0.00 0.00 31.56 5.40
246 247 4.959460 TGCTTGGGGGAAGGGGGT 62.959 66.667 0.00 0.00 31.56 4.95
247 248 4.382541 GCTTGGGGGAAGGGGGTG 62.383 72.222 0.00 0.00 31.56 4.61
248 249 2.863988 CTTGGGGGAAGGGGGTGT 60.864 66.667 0.00 0.00 0.00 4.16
249 250 3.189646 TTGGGGGAAGGGGGTGTG 61.190 66.667 0.00 0.00 0.00 3.82
250 251 4.542627 TGGGGGAAGGGGGTGTGT 62.543 66.667 0.00 0.00 0.00 3.72
251 252 3.658422 GGGGGAAGGGGGTGTGTC 61.658 72.222 0.00 0.00 0.00 3.67
252 253 4.029809 GGGGAAGGGGGTGTGTCG 62.030 72.222 0.00 0.00 0.00 4.35
253 254 4.029809 GGGAAGGGGGTGTGTCGG 62.030 72.222 0.00 0.00 0.00 4.79
255 256 3.246880 GAAGGGGGTGTGTCGGGT 61.247 66.667 0.00 0.00 0.00 5.28
259 260 3.618750 GGGGTGTGTCGGGTCGAA 61.619 66.667 0.00 0.00 37.72 3.71
260 261 2.048503 GGGTGTGTCGGGTCGAAG 60.049 66.667 0.00 0.00 37.72 3.79
261 262 2.737376 GGTGTGTCGGGTCGAAGC 60.737 66.667 0.00 0.00 37.72 3.86
262 263 2.028484 GTGTGTCGGGTCGAAGCA 59.972 61.111 0.00 0.00 37.72 3.91
264 265 2.197605 TGTGTCGGGTCGAAGCAGA 61.198 57.895 0.00 0.00 37.72 4.26
266 267 1.006571 TGTCGGGTCGAAGCAGAAC 60.007 57.895 0.00 0.00 37.72 3.01
267 268 1.006571 GTCGGGTCGAAGCAGAACA 60.007 57.895 0.00 0.00 37.72 3.18
268 269 0.389948 GTCGGGTCGAAGCAGAACAT 60.390 55.000 0.00 0.00 37.72 2.71
269 270 0.389817 TCGGGTCGAAGCAGAACATG 60.390 55.000 0.00 0.00 31.06 3.21
270 271 0.389817 CGGGTCGAAGCAGAACATGA 60.390 55.000 0.00 0.00 0.00 3.07
271 272 1.363744 GGGTCGAAGCAGAACATGAG 58.636 55.000 0.00 0.00 0.00 2.90
272 273 1.363744 GGTCGAAGCAGAACATGAGG 58.636 55.000 0.00 0.00 0.00 3.86
273 274 1.338200 GGTCGAAGCAGAACATGAGGT 60.338 52.381 0.00 0.00 0.00 3.85
274 275 1.728971 GTCGAAGCAGAACATGAGGTG 59.271 52.381 0.00 0.00 0.00 4.00
275 276 1.618343 TCGAAGCAGAACATGAGGTGA 59.382 47.619 0.00 0.00 0.00 4.02
276 277 1.998315 CGAAGCAGAACATGAGGTGAG 59.002 52.381 0.00 0.00 0.00 3.51
277 278 2.354259 GAAGCAGAACATGAGGTGAGG 58.646 52.381 0.00 0.00 0.00 3.86
278 279 1.356124 AGCAGAACATGAGGTGAGGT 58.644 50.000 0.00 0.00 0.00 3.85
280 281 1.947678 GCAGAACATGAGGTGAGGTGG 60.948 57.143 0.00 0.00 0.00 4.61
281 282 0.987294 AGAACATGAGGTGAGGTGGG 59.013 55.000 0.00 0.00 0.00 4.61
283 284 0.475632 AACATGAGGTGAGGTGGGGA 60.476 55.000 0.00 0.00 0.00 4.81
284 285 0.475632 ACATGAGGTGAGGTGGGGAA 60.476 55.000 0.00 0.00 0.00 3.97
286 287 0.916358 ATGAGGTGAGGTGGGGAAGG 60.916 60.000 0.00 0.00 0.00 3.46
287 288 1.229529 GAGGTGAGGTGGGGAAGGA 60.230 63.158 0.00 0.00 0.00 3.36
288 289 0.840722 GAGGTGAGGTGGGGAAGGAA 60.841 60.000 0.00 0.00 0.00 3.36
289 290 0.842467 AGGTGAGGTGGGGAAGGAAG 60.842 60.000 0.00 0.00 0.00 3.46
290 291 1.685820 GTGAGGTGGGGAAGGAAGG 59.314 63.158 0.00 0.00 0.00 3.46
291 292 1.541368 TGAGGTGGGGAAGGAAGGG 60.541 63.158 0.00 0.00 0.00 3.95
292 293 2.941583 AGGTGGGGAAGGAAGGGC 60.942 66.667 0.00 0.00 0.00 5.19
294 295 4.426313 GTGGGGAAGGAAGGGCGG 62.426 72.222 0.00 0.00 0.00 6.13
295 296 4.995058 TGGGGAAGGAAGGGCGGT 62.995 66.667 0.00 0.00 0.00 5.68
296 297 2.689771 GGGGAAGGAAGGGCGGTA 60.690 66.667 0.00 0.00 0.00 4.02
297 298 2.303282 GGGGAAGGAAGGGCGGTAA 61.303 63.158 0.00 0.00 0.00 2.85
299 300 0.257905 GGGAAGGAAGGGCGGTAATT 59.742 55.000 0.00 0.00 0.00 1.40
300 301 1.491754 GGGAAGGAAGGGCGGTAATTA 59.508 52.381 0.00 0.00 0.00 1.40
301 302 2.486727 GGGAAGGAAGGGCGGTAATTAG 60.487 54.545 0.00 0.00 0.00 1.73
302 303 2.436911 GGAAGGAAGGGCGGTAATTAGA 59.563 50.000 0.00 0.00 0.00 2.10
303 304 3.494573 GGAAGGAAGGGCGGTAATTAGAG 60.495 52.174 0.00 0.00 0.00 2.43
305 306 1.071857 GGAAGGGCGGTAATTAGAGGG 59.928 57.143 0.00 0.00 0.00 4.30
306 307 2.044758 GAAGGGCGGTAATTAGAGGGA 58.955 52.381 0.00 0.00 0.00 4.20
307 308 2.417719 AGGGCGGTAATTAGAGGGAT 57.582 50.000 0.00 0.00 0.00 3.85
308 309 1.978580 AGGGCGGTAATTAGAGGGATG 59.021 52.381 0.00 0.00 0.00 3.51
309 310 1.003233 GGGCGGTAATTAGAGGGATGG 59.997 57.143 0.00 0.00 0.00 3.51
315 568 1.427072 AATTAGAGGGATGGCCGGGG 61.427 60.000 2.18 0.00 33.83 5.73
335 588 3.118408 GGGTGATGGCAGTACTACAATGA 60.118 47.826 0.00 0.00 0.00 2.57
341 594 1.134788 GCAGTACTACAATGAGCGGGT 60.135 52.381 0.00 0.00 0.00 5.28
342 595 2.540515 CAGTACTACAATGAGCGGGTG 58.459 52.381 0.00 0.00 0.00 4.61
349 602 2.905996 AATGAGCGGGTGAAGGCCA 61.906 57.895 5.01 0.00 0.00 5.36
350 603 2.424842 AATGAGCGGGTGAAGGCCAA 62.425 55.000 5.01 0.00 0.00 4.52
352 605 1.678970 GAGCGGGTGAAGGCCAAAT 60.679 57.895 5.01 0.00 0.00 2.32
375 628 0.918983 GGACCAATGGAGGGATGACA 59.081 55.000 6.16 0.00 0.00 3.58
377 630 2.648059 GACCAATGGAGGGATGACAAG 58.352 52.381 6.16 0.00 0.00 3.16
421 674 3.580319 GTGGGGTTGGGAGCAGGT 61.580 66.667 0.00 0.00 0.00 4.00
448 701 2.358247 GAAGTCGAAGGGGCGCAA 60.358 61.111 10.83 0.00 0.00 4.85
453 706 2.047274 CGAAGGGGCGCAAAGAGA 60.047 61.111 10.83 0.00 0.00 3.10
459 712 2.301346 AGGGGCGCAAAGAGATAAATG 58.699 47.619 10.83 0.00 0.00 2.32
483 736 0.535102 CGTTGGCTGAAGGTGGAAGT 60.535 55.000 0.00 0.00 0.00 3.01
489 742 2.351455 GCTGAAGGTGGAAGTAGAAGC 58.649 52.381 0.00 0.00 0.00 3.86
496 749 4.417437 AGGTGGAAGTAGAAGCTTAGACA 58.583 43.478 0.00 0.00 0.00 3.41
501 754 6.092807 GTGGAAGTAGAAGCTTAGACAATTGG 59.907 42.308 10.83 0.00 0.00 3.16
508 761 4.373156 AGCTTAGACAATTGGTTGAGGT 57.627 40.909 10.83 6.29 38.71 3.85
514 767 7.595819 TTAGACAATTGGTTGAGGTTGAATT 57.404 32.000 10.83 0.00 38.71 2.17
517 770 6.986231 AGACAATTGGTTGAGGTTGAATTTTC 59.014 34.615 10.83 0.00 38.71 2.29
544 798 2.471815 ACCCGAGGAATAGATGTCCA 57.528 50.000 0.00 0.00 37.65 4.02
579 833 3.047280 GCCCGCACGTCAATGACA 61.047 61.111 14.24 0.00 32.09 3.58
580 834 3.027170 GCCCGCACGTCAATGACAG 62.027 63.158 14.24 8.69 32.09 3.51
581 835 2.476051 CCGCACGTCAATGACAGC 59.524 61.111 14.24 14.74 32.09 4.40
583 837 1.569003 CGCACGTCAATGACAGCAA 59.431 52.632 21.81 0.00 34.42 3.91
585 839 0.867746 GCACGTCAATGACAGCAAGA 59.132 50.000 18.73 0.00 34.74 3.02
586 840 1.264020 GCACGTCAATGACAGCAAGAA 59.736 47.619 18.73 0.00 34.74 2.52
587 841 2.286950 GCACGTCAATGACAGCAAGAAA 60.287 45.455 18.73 0.00 34.74 2.52
590 847 2.032894 CGTCAATGACAGCAAGAAACGT 60.033 45.455 14.24 0.00 32.09 3.99
596 853 4.383774 TGACAGCAAGAAACGTTATTCG 57.616 40.909 0.00 0.00 46.00 3.34
648 905 2.284684 GCTTCATGTGAGCTCTTGATCG 59.715 50.000 16.19 10.17 0.00 3.69
661 918 8.638873 TGAGCTCTTGATCGGACTAAATATAAA 58.361 33.333 16.19 0.00 0.00 1.40
663 920 9.832445 AGCTCTTGATCGGACTAAATATAAAAA 57.168 29.630 0.00 0.00 0.00 1.94
685 942 6.866010 AATTGGGTTTCATTTCTTTTCTGC 57.134 33.333 0.00 0.00 0.00 4.26
698 955 2.613026 TTTCTGCCTGTCGAGAAACA 57.387 45.000 0.00 0.00 34.09 2.83
799 1056 1.944024 TCGTTGACGCCTTTGACAAAT 59.056 42.857 0.05 0.00 39.60 2.32
800 1057 3.132160 TCGTTGACGCCTTTGACAAATA 58.868 40.909 0.05 0.00 39.60 1.40
802 1059 3.234386 GTTGACGCCTTTGACAAATAGC 58.766 45.455 0.05 7.00 0.00 2.97
803 1060 1.810151 TGACGCCTTTGACAAATAGCC 59.190 47.619 14.22 5.46 0.00 3.93
805 1062 0.523335 CGCCTTTGACAAATAGCCGC 60.523 55.000 14.22 6.01 0.00 6.53
806 1063 0.525761 GCCTTTGACAAATAGCCGCA 59.474 50.000 0.05 0.00 0.00 5.69
807 1064 1.732405 GCCTTTGACAAATAGCCGCAC 60.732 52.381 0.05 0.00 0.00 5.34
808 1065 1.465689 CCTTTGACAAATAGCCGCACG 60.466 52.381 0.05 0.00 0.00 5.34
809 1066 0.109964 TTTGACAAATAGCCGCACGC 60.110 50.000 0.00 0.00 37.98 5.34
830 1087 1.032014 TCCAAAGCTTGTCCTGTTGC 58.968 50.000 0.00 0.00 0.00 4.17
831 1088 0.746063 CCAAAGCTTGTCCTGTTGCA 59.254 50.000 0.00 0.00 0.00 4.08
832 1089 1.342174 CCAAAGCTTGTCCTGTTGCAT 59.658 47.619 0.00 0.00 0.00 3.96
833 1090 2.400399 CAAAGCTTGTCCTGTTGCATG 58.600 47.619 0.00 0.00 0.00 4.06
834 1091 0.316204 AAGCTTGTCCTGTTGCATGC 59.684 50.000 11.82 11.82 36.44 4.06
835 1092 1.080298 GCTTGTCCTGTTGCATGCC 60.080 57.895 16.68 0.28 32.01 4.40
836 1093 1.808531 GCTTGTCCTGTTGCATGCCA 61.809 55.000 16.68 5.80 32.01 4.92
839 1096 2.677524 TCCTGTTGCATGCCAGGC 60.678 61.111 28.61 3.66 46.43 4.85
840 1097 3.766691 CCTGTTGCATGCCAGGCC 61.767 66.667 24.39 0.00 41.65 5.19
841 1098 2.992689 CTGTTGCATGCCAGGCCA 60.993 61.111 16.68 0.00 0.00 5.36
842 1099 3.291101 CTGTTGCATGCCAGGCCAC 62.291 63.158 16.68 0.00 0.00 5.01
843 1100 4.073200 GTTGCATGCCAGGCCACC 62.073 66.667 16.68 0.00 0.00 4.61
848 1105 3.025599 ATGCCAGGCCACCCTCAT 61.026 61.111 9.64 0.00 40.33 2.90
851 1108 2.757099 CCAGGCCACCCTCATTGC 60.757 66.667 5.01 0.00 40.33 3.56
855 1112 2.054453 GGCCACCCTCATTGCCTTC 61.054 63.158 0.00 0.00 40.77 3.46
856 1113 2.054453 GCCACCCTCATTGCCTTCC 61.054 63.158 0.00 0.00 0.00 3.46
857 1114 1.693640 CCACCCTCATTGCCTTCCT 59.306 57.895 0.00 0.00 0.00 3.36
860 1117 2.711009 CCACCCTCATTGCCTTCCTATA 59.289 50.000 0.00 0.00 0.00 1.31
861 1118 3.244700 CCACCCTCATTGCCTTCCTATAG 60.245 52.174 0.00 0.00 0.00 1.31
862 1119 3.392616 CACCCTCATTGCCTTCCTATAGT 59.607 47.826 0.00 0.00 0.00 2.12
863 1120 4.047883 ACCCTCATTGCCTTCCTATAGTT 58.952 43.478 0.00 0.00 0.00 2.24
864 1121 4.478686 ACCCTCATTGCCTTCCTATAGTTT 59.521 41.667 0.00 0.00 0.00 2.66
866 1123 6.332901 ACCCTCATTGCCTTCCTATAGTTTAT 59.667 38.462 0.00 0.00 0.00 1.40
867 1124 7.516209 ACCCTCATTGCCTTCCTATAGTTTATA 59.484 37.037 0.00 0.00 0.00 0.98
868 1125 8.043710 CCCTCATTGCCTTCCTATAGTTTATAG 58.956 40.741 0.00 0.00 38.27 1.31
878 5630 5.589452 TCCTATAGTTTATAGCTAGCTCGCC 59.411 44.000 23.26 6.11 37.42 5.54
879 5631 5.591067 CCTATAGTTTATAGCTAGCTCGCCT 59.409 44.000 23.26 13.20 37.42 5.52
890 5650 3.813166 GCTAGCTCGCCTCTCCTATATAG 59.187 52.174 7.70 2.46 0.00 1.31
976 5819 2.588314 CAGCAGAGCCATCCGAGC 60.588 66.667 0.00 0.00 0.00 5.03
977 5820 2.763292 AGCAGAGCCATCCGAGCT 60.763 61.111 0.00 0.00 45.23 4.09
978 5821 1.456518 AGCAGAGCCATCCGAGCTA 60.457 57.895 0.00 0.00 41.75 3.32
979 5822 1.006337 GCAGAGCCATCCGAGCTAG 60.006 63.158 0.00 0.00 41.75 3.42
980 5823 1.459455 GCAGAGCCATCCGAGCTAGA 61.459 60.000 0.00 0.00 41.75 2.43
981 5824 0.313672 CAGAGCCATCCGAGCTAGAC 59.686 60.000 0.00 0.00 41.75 2.59
982 5825 0.184933 AGAGCCATCCGAGCTAGACT 59.815 55.000 0.00 0.00 41.75 3.24
983 5826 1.422024 AGAGCCATCCGAGCTAGACTA 59.578 52.381 0.00 0.00 41.75 2.59
984 5827 1.810151 GAGCCATCCGAGCTAGACTAG 59.190 57.143 5.03 5.03 41.75 2.57
1069 5912 2.089980 CCTCCAAAATCAGCAGGTCTG 58.910 52.381 0.00 0.00 44.21 3.51
1077 5920 1.220206 CAGCAGGTCTGGTAGCAGG 59.780 63.158 21.22 6.81 39.58 4.85
1092 5950 3.638316 AGGAGCAGCAGCAGCAGT 61.638 61.111 12.92 0.00 45.49 4.40
1096 5954 4.086178 GCAGCAGCAGCAGTGACG 62.086 66.667 4.63 0.00 45.49 4.35
1194 12102 2.997897 GTGCAGAGGAGGGACGGT 60.998 66.667 0.00 0.00 0.00 4.83
1404 12358 6.152661 GTGGTTCATTTGGTCATGATTCCTTA 59.847 38.462 0.00 0.00 33.07 2.69
1464 12422 6.222389 TCTTTATGTTGCCAAAGTTGAATGG 58.778 36.000 0.00 0.00 39.80 3.16
1491 12498 2.490903 CCCCAAGCACTCATCTTTTCAG 59.509 50.000 0.00 0.00 0.00 3.02
1553 12767 3.362831 GTGCTGATTTGATCTTGCAAACG 59.637 43.478 0.00 0.00 40.23 3.60
1555 12769 3.605486 GCTGATTTGATCTTGCAAACGTC 59.395 43.478 0.00 0.00 40.23 4.34
1565 12780 4.684877 TCTTGCAAACGTCAGTAGTACAA 58.315 39.130 0.00 0.00 0.00 2.41
1586 12801 6.701340 ACAAGTAGATTCACAGCAACTATGA 58.299 36.000 0.00 0.00 0.00 2.15
1588 12803 8.478066 ACAAGTAGATTCACAGCAACTATGATA 58.522 33.333 0.00 0.00 0.00 2.15
1620 12835 6.183360 TGGCTAGTTCCATCTTGTGTATAGTC 60.183 42.308 0.00 0.00 0.00 2.59
1627 12848 9.654663 GTTCCATCTTGTGTATAGTCTTTTACT 57.345 33.333 0.00 0.00 42.62 2.24
1675 12896 8.682710 AGCATTTTTACAAGAACAACTAGACAA 58.317 29.630 0.00 0.00 0.00 3.18
1684 12905 8.258708 ACAAGAACAACTAGACAAGTCTAAACT 58.741 33.333 10.81 2.91 41.22 2.66
1685 12906 8.756864 CAAGAACAACTAGACAAGTCTAAACTC 58.243 37.037 10.81 4.60 41.22 3.01
1689 12910 8.874744 ACAACTAGACAAGTCTAAACTCTTTC 57.125 34.615 10.81 0.00 41.22 2.62
1693 12914 9.752961 ACTAGACAAGTCTAAACTCTTTCTTTC 57.247 33.333 10.81 0.00 41.22 2.62
1694 12915 9.974980 CTAGACAAGTCTAAACTCTTTCTTTCT 57.025 33.333 10.81 0.00 41.22 2.52
1739 15076 2.032376 TTCGCACAGCCAGATGCA 59.968 55.556 0.00 0.00 44.83 3.96
1751 15089 6.316140 CACAGCCAGATGCACTAATTTTACTA 59.684 38.462 0.00 0.00 44.83 1.82
1777 15120 5.607939 TTCTCCAAGTTGAGTAGTTGACA 57.392 39.130 3.87 0.00 39.15 3.58
1778 15121 4.945246 TCTCCAAGTTGAGTAGTTGACAC 58.055 43.478 3.87 0.00 39.15 3.67
1779 15122 3.713288 TCCAAGTTGAGTAGTTGACACG 58.287 45.455 3.87 0.00 39.15 4.49
1780 15123 3.131577 TCCAAGTTGAGTAGTTGACACGT 59.868 43.478 3.87 0.00 39.15 4.49
1781 15124 3.245284 CCAAGTTGAGTAGTTGACACGTG 59.755 47.826 15.48 15.48 39.15 4.49
1782 15125 3.795623 AGTTGAGTAGTTGACACGTGT 57.204 42.857 23.64 23.64 0.00 4.49
1783 15126 3.444916 AGTTGAGTAGTTGACACGTGTG 58.555 45.455 28.82 0.00 0.00 3.82
1784 15127 3.129813 AGTTGAGTAGTTGACACGTGTGA 59.870 43.478 28.82 16.64 0.00 3.58
1868 15226 6.408662 GGTCTCCTCCTTGCTTCAGTAATAAT 60.409 42.308 0.00 0.00 0.00 1.28
1895 15253 3.703001 AACAACCGATGACAAGGATCT 57.297 42.857 7.26 0.00 0.00 2.75
1910 15268 2.753009 GATCTGTGCTGTGCCACCCA 62.753 60.000 0.00 0.00 34.85 4.51
1952 15426 8.877864 AAATCATGGAGTTGTCCTTGTAATTA 57.122 30.769 7.08 0.00 44.79 1.40
1992 15467 3.610821 CGGACATGTCTGAACAACGACTA 60.611 47.826 27.59 0.00 39.30 2.59
2335 19236 2.660064 GGACAGCGACCACCTCCAT 61.660 63.158 0.00 0.00 0.00 3.41
2551 19515 9.634163 TCTCAGAAAAAGTTGTTAAAAGAAACC 57.366 29.630 0.00 0.00 0.00 3.27
2779 19766 3.807209 GCTCCCAGAGTTGCAAGTCTAAA 60.807 47.826 31.28 19.69 36.59 1.85
2808 19799 7.040132 TGGATGTCATGCATGTTAACAAGTTAA 60.040 33.333 25.43 1.46 38.06 2.01
2912 19959 1.676006 CAACGGGATCTTGGGCATAAC 59.324 52.381 0.00 0.00 0.00 1.89
3088 20400 4.474651 AGATACTTTGTGATGGGGTGATGA 59.525 41.667 0.00 0.00 0.00 2.92
3108 20420 0.321122 AGCTCCTGAAGAAGTTGGCG 60.321 55.000 0.00 0.00 0.00 5.69
3125 20437 0.170561 GCGCAACTAAGAGGTCTCGA 59.829 55.000 0.30 0.00 34.09 4.04
3155 20633 0.813184 GGTGACGACCCGATACTTCA 59.187 55.000 0.00 0.00 36.03 3.02
3161 20639 1.386533 GACCCGATACTTCACCTCGA 58.613 55.000 0.00 0.00 34.41 4.04
3164 20642 0.731417 CCGATACTTCACCTCGACGT 59.269 55.000 0.00 0.00 34.41 4.34
3171 20649 0.460722 TTCACCTCGACGTTCAACCA 59.539 50.000 0.00 0.00 0.00 3.67
3200 20678 9.843334 AAACAATAAGTTAAAGTTTCGACAACA 57.157 25.926 11.33 0.00 40.26 3.33
3297 20775 4.339247 GCCTGCATTTGAATAAGCTAGGAA 59.661 41.667 0.00 0.00 31.40 3.36
3298 20776 5.506982 GCCTGCATTTGAATAAGCTAGGAAG 60.507 44.000 0.00 0.00 31.40 3.46
3358 20836 3.439895 GAGGTTCCCTCGAGATACAAC 57.560 52.381 15.71 10.18 41.08 3.32
3433 20911 4.697352 GCTGGTTGAACAATGTATGAGAGT 59.303 41.667 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.731292 AGCAAAACCCAATTTTTCTAGAGT 57.269 33.333 0.00 0.00 38.50 3.24
4 5 9.143631 CATTAGCAAAACCCAATTTTTCTAGAG 57.856 33.333 0.00 0.00 37.33 2.43
5 6 8.646900 ACATTAGCAAAACCCAATTTTTCTAGA 58.353 29.630 0.00 0.00 37.33 2.43
6 7 8.831715 ACATTAGCAAAACCCAATTTTTCTAG 57.168 30.769 0.00 0.00 37.33 2.43
7 8 9.267084 GAACATTAGCAAAACCCAATTTTTCTA 57.733 29.630 0.00 0.00 38.50 2.10
9 10 7.924940 TGAACATTAGCAAAACCCAATTTTTC 58.075 30.769 0.00 0.00 38.50 2.29
10 11 7.872113 TGAACATTAGCAAAACCCAATTTTT 57.128 28.000 0.00 0.00 38.50 1.94
12 13 7.872113 TTTGAACATTAGCAAAACCCAATTT 57.128 28.000 0.00 0.00 31.64 1.82
13 14 7.772757 TCTTTTGAACATTAGCAAAACCCAATT 59.227 29.630 0.00 0.00 38.60 2.32
16 17 6.227298 TCTTTTGAACATTAGCAAAACCCA 57.773 33.333 0.00 0.00 38.60 4.51
18 19 7.358352 CGACATCTTTTGAACATTAGCAAAACC 60.358 37.037 0.00 0.00 38.60 3.27
19 20 7.358352 CCGACATCTTTTGAACATTAGCAAAAC 60.358 37.037 0.00 0.00 38.60 2.43
20 21 6.640499 CCGACATCTTTTGAACATTAGCAAAA 59.360 34.615 0.00 0.00 40.50 2.44
23 24 4.379394 GCCGACATCTTTTGAACATTAGCA 60.379 41.667 0.00 0.00 0.00 3.49
24 25 4.098416 GCCGACATCTTTTGAACATTAGC 58.902 43.478 0.00 0.00 0.00 3.09
26 27 4.075682 TGGCCGACATCTTTTGAACATTA 58.924 39.130 0.00 0.00 0.00 1.90
28 29 2.513753 TGGCCGACATCTTTTGAACAT 58.486 42.857 0.00 0.00 0.00 2.71
30 31 3.689649 ACTATGGCCGACATCTTTTGAAC 59.310 43.478 0.00 0.00 41.03 3.18
31 32 3.950397 ACTATGGCCGACATCTTTTGAA 58.050 40.909 0.00 0.00 41.03 2.69
32 33 3.627395 ACTATGGCCGACATCTTTTGA 57.373 42.857 0.00 0.00 41.03 2.69
33 34 3.242413 CGAACTATGGCCGACATCTTTTG 60.242 47.826 0.00 0.00 41.03 2.44
34 35 2.936498 CGAACTATGGCCGACATCTTTT 59.064 45.455 0.00 0.00 41.03 2.27
35 36 2.093658 ACGAACTATGGCCGACATCTTT 60.094 45.455 0.00 0.00 41.03 2.52
36 37 1.480954 ACGAACTATGGCCGACATCTT 59.519 47.619 0.00 0.00 41.03 2.40
37 38 1.112113 ACGAACTATGGCCGACATCT 58.888 50.000 0.00 0.00 41.03 2.90
38 39 1.202371 TCACGAACTATGGCCGACATC 60.202 52.381 0.00 0.00 41.03 3.06
39 40 0.821517 TCACGAACTATGGCCGACAT 59.178 50.000 0.00 0.00 43.68 3.06
40 41 0.604073 TTCACGAACTATGGCCGACA 59.396 50.000 0.00 0.00 0.00 4.35
43 44 0.739462 TGCTTCACGAACTATGGCCG 60.739 55.000 0.00 0.00 0.00 6.13
44 45 0.727398 GTGCTTCACGAACTATGGCC 59.273 55.000 0.00 0.00 0.00 5.36
45 46 0.727398 GGTGCTTCACGAACTATGGC 59.273 55.000 0.00 0.00 34.83 4.40
46 47 0.999406 CGGTGCTTCACGAACTATGG 59.001 55.000 0.00 0.00 34.83 2.74
47 48 1.390123 CACGGTGCTTCACGAACTATG 59.610 52.381 0.00 0.00 34.83 2.23
48 49 1.671850 CCACGGTGCTTCACGAACTAT 60.672 52.381 1.68 0.00 34.83 2.12
50 51 1.594293 CCACGGTGCTTCACGAACT 60.594 57.895 1.68 0.00 34.83 3.01
51 52 2.935955 CCACGGTGCTTCACGAAC 59.064 61.111 1.68 0.00 34.83 3.95
52 53 2.970324 GCCACGGTGCTTCACGAA 60.970 61.111 1.68 0.00 34.83 3.85
53 54 4.980805 GGCCACGGTGCTTCACGA 62.981 66.667 1.68 0.00 34.83 4.35
98 99 2.264480 CCGTCATCTTCGGCCACA 59.736 61.111 2.24 0.00 41.48 4.17
122 123 1.214062 CAGAGTCCCTGCACTCGAC 59.786 63.158 0.00 0.00 46.52 4.20
123 124 1.979155 CCAGAGTCCCTGCACTCGA 60.979 63.158 0.00 0.00 46.52 4.04
124 125 2.575993 CCAGAGTCCCTGCACTCG 59.424 66.667 0.00 0.00 46.52 4.18
130 131 2.045536 GCCTTGCCAGAGTCCCTG 60.046 66.667 0.00 0.00 42.55 4.45
156 157 2.278857 CTGATTCCGGGTCGCTCG 60.279 66.667 0.00 0.00 0.00 5.03
160 161 0.754217 TAGTCCCTGATTCCGGGTCG 60.754 60.000 12.40 0.00 42.56 4.79
167 168 3.251571 GTTGTCGTGTAGTCCCTGATTC 58.748 50.000 0.00 0.00 0.00 2.52
173 174 1.068055 ACATCGTTGTCGTGTAGTCCC 60.068 52.381 0.00 0.00 38.33 4.46
178 179 2.293955 TCTGGAACATCGTTGTCGTGTA 59.706 45.455 0.00 0.00 38.20 2.90
189 190 3.922171 ACTTCCCTCATCTGGAACATC 57.078 47.619 0.00 0.00 36.97 3.06
194 195 2.103373 CTCGAACTTCCCTCATCTGGA 58.897 52.381 0.00 0.00 0.00 3.86
206 207 2.470821 CGAACTGTCAACCTCGAACTT 58.529 47.619 0.00 0.00 33.13 2.66
212 213 1.079503 GCATCCGAACTGTCAACCTC 58.920 55.000 0.00 0.00 0.00 3.85
213 214 0.687354 AGCATCCGAACTGTCAACCT 59.313 50.000 0.00 0.00 0.00 3.50
215 216 1.197721 CCAAGCATCCGAACTGTCAAC 59.802 52.381 0.00 0.00 0.00 3.18
216 217 1.522668 CCAAGCATCCGAACTGTCAA 58.477 50.000 0.00 0.00 0.00 3.18
217 218 0.321564 CCCAAGCATCCGAACTGTCA 60.322 55.000 0.00 0.00 0.00 3.58
218 219 1.026718 CCCCAAGCATCCGAACTGTC 61.027 60.000 0.00 0.00 0.00 3.51
219 220 1.002134 CCCCAAGCATCCGAACTGT 60.002 57.895 0.00 0.00 0.00 3.55
221 222 1.497309 TTCCCCCAAGCATCCGAACT 61.497 55.000 0.00 0.00 0.00 3.01
222 223 1.001393 TTCCCCCAAGCATCCGAAC 60.001 57.895 0.00 0.00 0.00 3.95
223 224 1.302949 CTTCCCCCAAGCATCCGAA 59.697 57.895 0.00 0.00 0.00 4.30
227 228 2.280079 CCCCTTCCCCCAAGCATC 59.720 66.667 0.00 0.00 0.00 3.91
228 229 3.358824 CCCCCTTCCCCCAAGCAT 61.359 66.667 0.00 0.00 0.00 3.79
230 231 4.382541 CACCCCCTTCCCCCAAGC 62.383 72.222 0.00 0.00 0.00 4.01
232 233 3.189646 CACACCCCCTTCCCCCAA 61.190 66.667 0.00 0.00 0.00 4.12
234 235 3.658422 GACACACCCCCTTCCCCC 61.658 72.222 0.00 0.00 0.00 5.40
235 236 4.029809 CGACACACCCCCTTCCCC 62.030 72.222 0.00 0.00 0.00 4.81
236 237 4.029809 CCGACACACCCCCTTCCC 62.030 72.222 0.00 0.00 0.00 3.97
238 239 3.246880 ACCCGACACACCCCCTTC 61.247 66.667 0.00 0.00 0.00 3.46
239 240 3.246880 GACCCGACACACCCCCTT 61.247 66.667 0.00 0.00 0.00 3.95
242 243 3.584868 CTTCGACCCGACACACCCC 62.585 68.421 0.00 0.00 34.89 4.95
243 244 2.048503 CTTCGACCCGACACACCC 60.049 66.667 0.00 0.00 34.89 4.61
244 245 2.737376 GCTTCGACCCGACACACC 60.737 66.667 0.00 0.00 34.89 4.16
245 246 2.022129 CTGCTTCGACCCGACACAC 61.022 63.158 0.00 0.00 34.89 3.82
246 247 1.740332 TTCTGCTTCGACCCGACACA 61.740 55.000 0.00 0.00 34.89 3.72
247 248 1.006571 TTCTGCTTCGACCCGACAC 60.007 57.895 0.00 0.00 34.89 3.67
248 249 1.006571 GTTCTGCTTCGACCCGACA 60.007 57.895 0.00 0.00 34.89 4.35
249 250 0.389948 ATGTTCTGCTTCGACCCGAC 60.390 55.000 0.00 0.00 34.89 4.79
250 251 0.389817 CATGTTCTGCTTCGACCCGA 60.390 55.000 0.00 0.00 0.00 5.14
251 252 0.389817 TCATGTTCTGCTTCGACCCG 60.390 55.000 0.00 0.00 0.00 5.28
252 253 1.363744 CTCATGTTCTGCTTCGACCC 58.636 55.000 0.00 0.00 0.00 4.46
253 254 1.338200 ACCTCATGTTCTGCTTCGACC 60.338 52.381 0.00 0.00 0.00 4.79
255 256 1.618343 TCACCTCATGTTCTGCTTCGA 59.382 47.619 0.00 0.00 0.00 3.71
259 260 1.002888 CACCTCACCTCATGTTCTGCT 59.997 52.381 0.00 0.00 0.00 4.24
260 261 1.446907 CACCTCACCTCATGTTCTGC 58.553 55.000 0.00 0.00 0.00 4.26
261 262 1.339438 CCCACCTCACCTCATGTTCTG 60.339 57.143 0.00 0.00 0.00 3.02
262 263 0.987294 CCCACCTCACCTCATGTTCT 59.013 55.000 0.00 0.00 0.00 3.01
264 265 0.475632 TCCCCACCTCACCTCATGTT 60.476 55.000 0.00 0.00 0.00 2.71
266 267 0.254178 CTTCCCCACCTCACCTCATG 59.746 60.000 0.00 0.00 0.00 3.07
267 268 0.916358 CCTTCCCCACCTCACCTCAT 60.916 60.000 0.00 0.00 0.00 2.90
268 269 1.538876 CCTTCCCCACCTCACCTCA 60.539 63.158 0.00 0.00 0.00 3.86
269 270 0.840722 TTCCTTCCCCACCTCACCTC 60.841 60.000 0.00 0.00 0.00 3.85
270 271 0.842467 CTTCCTTCCCCACCTCACCT 60.842 60.000 0.00 0.00 0.00 4.00
271 272 1.685820 CTTCCTTCCCCACCTCACC 59.314 63.158 0.00 0.00 0.00 4.02
272 273 1.685820 CCTTCCTTCCCCACCTCAC 59.314 63.158 0.00 0.00 0.00 3.51
273 274 1.541368 CCCTTCCTTCCCCACCTCA 60.541 63.158 0.00 0.00 0.00 3.86
274 275 2.985116 GCCCTTCCTTCCCCACCTC 61.985 68.421 0.00 0.00 0.00 3.85
275 276 2.941583 GCCCTTCCTTCCCCACCT 60.942 66.667 0.00 0.00 0.00 4.00
276 277 4.426313 CGCCCTTCCTTCCCCACC 62.426 72.222 0.00 0.00 0.00 4.61
277 278 4.426313 CCGCCCTTCCTTCCCCAC 62.426 72.222 0.00 0.00 0.00 4.61
278 279 3.566016 TACCGCCCTTCCTTCCCCA 62.566 63.158 0.00 0.00 0.00 4.96
280 281 0.257905 AATTACCGCCCTTCCTTCCC 59.742 55.000 0.00 0.00 0.00 3.97
281 282 2.436911 TCTAATTACCGCCCTTCCTTCC 59.563 50.000 0.00 0.00 0.00 3.46
283 284 2.438392 CCTCTAATTACCGCCCTTCCTT 59.562 50.000 0.00 0.00 0.00 3.36
284 285 2.047830 CCTCTAATTACCGCCCTTCCT 58.952 52.381 0.00 0.00 0.00 3.36
286 287 2.044758 TCCCTCTAATTACCGCCCTTC 58.955 52.381 0.00 0.00 0.00 3.46
287 288 2.185663 TCCCTCTAATTACCGCCCTT 57.814 50.000 0.00 0.00 0.00 3.95
288 289 1.978580 CATCCCTCTAATTACCGCCCT 59.021 52.381 0.00 0.00 0.00 5.19
289 290 1.003233 CCATCCCTCTAATTACCGCCC 59.997 57.143 0.00 0.00 0.00 6.13
290 291 1.610886 GCCATCCCTCTAATTACCGCC 60.611 57.143 0.00 0.00 0.00 6.13
291 292 1.610886 GGCCATCCCTCTAATTACCGC 60.611 57.143 0.00 0.00 0.00 5.68
292 293 1.337823 CGGCCATCCCTCTAATTACCG 60.338 57.143 2.24 0.00 0.00 4.02
294 295 1.003233 CCCGGCCATCCCTCTAATTAC 59.997 57.143 2.24 0.00 0.00 1.89
295 296 1.358152 CCCGGCCATCCCTCTAATTA 58.642 55.000 2.24 0.00 0.00 1.40
296 297 1.427072 CCCCGGCCATCCCTCTAATT 61.427 60.000 2.24 0.00 0.00 1.40
297 298 1.847968 CCCCGGCCATCCCTCTAAT 60.848 63.158 2.24 0.00 0.00 1.73
299 300 3.774336 ACCCCGGCCATCCCTCTA 61.774 66.667 2.24 0.00 0.00 2.43
302 303 4.843331 ATCACCCCGGCCATCCCT 62.843 66.667 2.24 0.00 0.00 4.20
303 304 4.586235 CATCACCCCGGCCATCCC 62.586 72.222 2.24 0.00 0.00 3.85
315 568 3.557595 GCTCATTGTAGTACTGCCATCAC 59.442 47.826 5.39 0.00 0.00 3.06
318 571 2.483714 CCGCTCATTGTAGTACTGCCAT 60.484 50.000 5.39 0.00 0.00 4.40
335 588 1.978617 CATTTGGCCTTCACCCGCT 60.979 57.895 3.32 0.00 0.00 5.52
341 594 1.076841 TGGTCCATCATTTGGCCTTCA 59.923 47.619 3.32 0.00 46.01 3.02
342 595 1.851304 TGGTCCATCATTTGGCCTTC 58.149 50.000 3.32 0.00 46.01 3.46
349 602 2.586838 TCCCTCCATTGGTCCATCATTT 59.413 45.455 1.86 0.00 0.00 2.32
350 603 2.216881 TCCCTCCATTGGTCCATCATT 58.783 47.619 1.86 0.00 0.00 2.57
352 605 1.496001 CATCCCTCCATTGGTCCATCA 59.504 52.381 1.86 0.00 0.00 3.07
359 612 2.025863 GCCTTGTCATCCCTCCATTGG 61.026 57.143 0.00 0.00 0.00 3.16
361 614 0.107017 CGCCTTGTCATCCCTCCATT 60.107 55.000 0.00 0.00 0.00 3.16
405 658 3.579302 CACCTGCTCCCAACCCCA 61.579 66.667 0.00 0.00 0.00 4.96
406 659 4.366684 CCACCTGCTCCCAACCCC 62.367 72.222 0.00 0.00 0.00 4.95
421 674 2.154798 CTTCGACTTCGGCCTGACCA 62.155 60.000 0.00 0.00 39.03 4.02
448 701 6.653320 TCAGCCAACGTTAACATTTATCTCTT 59.347 34.615 0.00 0.00 0.00 2.85
453 706 5.475564 ACCTTCAGCCAACGTTAACATTTAT 59.524 36.000 0.00 0.00 0.00 1.40
459 712 1.265905 CCACCTTCAGCCAACGTTAAC 59.734 52.381 0.00 0.00 0.00 2.01
483 736 6.173339 CCTCAACCAATTGTCTAAGCTTCTA 58.827 40.000 0.00 0.00 37.11 2.10
489 742 6.633500 TTCAACCTCAACCAATTGTCTAAG 57.367 37.500 4.43 0.00 37.11 2.18
496 749 7.563906 TGAAGAAAATTCAACCTCAACCAATT 58.436 30.769 0.00 0.00 0.00 2.32
501 754 5.836347 AGCTGAAGAAAATTCAACCTCAAC 58.164 37.500 0.00 0.00 0.00 3.18
508 761 4.647611 TCGGGTAGCTGAAGAAAATTCAA 58.352 39.130 0.00 0.00 0.00 2.69
514 767 1.933021 TCCTCGGGTAGCTGAAGAAA 58.067 50.000 4.75 0.00 0.00 2.52
517 770 3.223435 TCTATTCCTCGGGTAGCTGAAG 58.777 50.000 4.75 0.00 0.00 3.02
544 798 4.075682 CGGGCCCCAATAAAATTTGTTTT 58.924 39.130 18.66 0.00 0.00 2.43
579 833 4.823790 AAACCGAATAACGTTTCTTGCT 57.176 36.364 5.91 0.00 40.78 3.91
580 834 4.546941 CGTAAACCGAATAACGTTTCTTGC 59.453 41.667 5.91 0.00 40.78 4.01
581 835 4.546941 GCGTAAACCGAATAACGTTTCTTG 59.453 41.667 5.91 0.00 40.78 3.02
583 837 3.181541 CGCGTAAACCGAATAACGTTTCT 60.182 43.478 5.91 0.00 40.78 2.52
585 839 2.159854 CCGCGTAAACCGAATAACGTTT 60.160 45.455 5.91 0.00 40.78 3.60
586 840 1.389784 CCGCGTAAACCGAATAACGTT 59.610 47.619 5.88 5.88 40.78 3.99
587 841 0.991344 CCGCGTAAACCGAATAACGT 59.009 50.000 4.92 0.00 40.78 3.99
590 847 1.088910 GGCCCGCGTAAACCGAATAA 61.089 55.000 4.92 0.00 39.56 1.40
621 878 1.672356 GCTCACATGAAGCCACCGT 60.672 57.895 0.00 0.00 0.00 4.83
622 879 1.364626 GAGCTCACATGAAGCCACCG 61.365 60.000 9.40 0.00 0.00 4.94
661 918 6.262944 GGCAGAAAAGAAATGAAACCCAATTT 59.737 34.615 0.00 0.00 0.00 1.82
663 920 5.072193 AGGCAGAAAAGAAATGAAACCCAAT 59.928 36.000 0.00 0.00 0.00 3.16
667 924 4.948847 ACAGGCAGAAAAGAAATGAAACC 58.051 39.130 0.00 0.00 0.00 3.27
671 928 3.738982 TCGACAGGCAGAAAAGAAATGA 58.261 40.909 0.00 0.00 0.00 2.57
677 934 2.872245 TGTTTCTCGACAGGCAGAAAAG 59.128 45.455 3.30 0.00 39.71 2.27
680 937 1.412710 AGTGTTTCTCGACAGGCAGAA 59.587 47.619 0.00 0.00 0.00 3.02
684 941 2.032808 GTGAAAGTGTTTCTCGACAGGC 60.033 50.000 1.39 0.00 40.32 4.85
685 942 3.194861 TGTGAAAGTGTTTCTCGACAGG 58.805 45.455 1.39 0.00 40.32 4.00
698 955 6.590234 AAAGGAGAAACAACTTGTGAAAGT 57.410 33.333 0.00 0.00 33.76 2.66
809 1066 2.544486 GCAACAGGACAAGCTTTGGAAG 60.544 50.000 0.00 0.00 34.12 3.46
810 1067 1.408702 GCAACAGGACAAGCTTTGGAA 59.591 47.619 0.00 0.00 34.12 3.53
811 1068 1.032014 GCAACAGGACAAGCTTTGGA 58.968 50.000 0.00 0.00 34.12 3.53
812 1069 0.746063 TGCAACAGGACAAGCTTTGG 59.254 50.000 0.00 0.00 34.12 3.28
813 1070 2.400399 CATGCAACAGGACAAGCTTTG 58.600 47.619 0.00 0.00 0.00 2.77
814 1071 1.269936 GCATGCAACAGGACAAGCTTT 60.270 47.619 14.21 0.00 0.00 3.51
815 1072 0.316204 GCATGCAACAGGACAAGCTT 59.684 50.000 14.21 0.00 0.00 3.74
816 1073 1.530013 GGCATGCAACAGGACAAGCT 61.530 55.000 21.36 0.00 31.48 3.74
818 1075 0.242825 CTGGCATGCAACAGGACAAG 59.757 55.000 21.36 0.00 31.05 3.16
819 1076 2.343506 CTGGCATGCAACAGGACAA 58.656 52.632 21.36 0.00 31.05 3.18
820 1077 4.084265 CTGGCATGCAACAGGACA 57.916 55.556 21.36 5.16 30.53 4.02
825 1082 3.304721 GTGGCCTGGCATGCAACA 61.305 61.111 22.05 8.31 32.71 3.33
830 1087 2.866523 AATGAGGGTGGCCTGGCATG 62.867 60.000 22.05 0.00 0.00 4.06
831 1088 2.629498 AATGAGGGTGGCCTGGCAT 61.629 57.895 22.05 0.00 0.00 4.40
832 1089 3.267233 AATGAGGGTGGCCTGGCA 61.267 61.111 22.05 1.21 0.00 4.92
833 1090 2.757099 CAATGAGGGTGGCCTGGC 60.757 66.667 11.05 11.05 0.00 4.85
834 1091 2.757099 GCAATGAGGGTGGCCTGG 60.757 66.667 3.32 0.00 0.00 4.45
835 1092 2.757099 GGCAATGAGGGTGGCCTG 60.757 66.667 3.32 0.00 43.09 4.85
838 1095 2.054453 GGAAGGCAATGAGGGTGGC 61.054 63.158 0.00 0.00 41.67 5.01
839 1096 0.918983 TAGGAAGGCAATGAGGGTGG 59.081 55.000 0.00 0.00 0.00 4.61
840 1097 3.392616 ACTATAGGAAGGCAATGAGGGTG 59.607 47.826 4.43 0.00 0.00 4.61
841 1098 3.669949 ACTATAGGAAGGCAATGAGGGT 58.330 45.455 4.43 0.00 0.00 4.34
842 1099 4.713792 AACTATAGGAAGGCAATGAGGG 57.286 45.455 4.43 0.00 0.00 4.30
843 1100 7.550906 GCTATAAACTATAGGAAGGCAATGAGG 59.449 40.741 4.43 0.00 38.82 3.86
844 1101 8.317679 AGCTATAAACTATAGGAAGGCAATGAG 58.682 37.037 4.43 0.00 38.82 2.90
845 1102 8.207350 AGCTATAAACTATAGGAAGGCAATGA 57.793 34.615 4.43 0.00 38.82 2.57
846 1103 9.593134 CTAGCTATAAACTATAGGAAGGCAATG 57.407 37.037 4.43 0.00 38.82 2.82
848 1105 7.455008 AGCTAGCTATAAACTATAGGAAGGCAA 59.545 37.037 17.69 0.00 38.82 4.52
851 1108 7.680113 GCGAGCTAGCTATAAACTATAGGAAGG 60.680 44.444 19.38 0.00 38.82 3.46
853 1110 6.095160 GGCGAGCTAGCTATAAACTATAGGAA 59.905 42.308 19.38 0.00 38.82 3.36
855 1112 5.591067 AGGCGAGCTAGCTATAAACTATAGG 59.409 44.000 19.38 0.00 38.82 2.57
856 1113 6.540914 AGAGGCGAGCTAGCTATAAACTATAG 59.459 42.308 19.38 0.00 40.83 1.31
857 1114 6.416415 AGAGGCGAGCTAGCTATAAACTATA 58.584 40.000 19.38 0.00 37.29 1.31
860 1117 3.492337 AGAGGCGAGCTAGCTATAAACT 58.508 45.455 19.38 11.64 37.29 2.66
861 1118 3.366577 GGAGAGGCGAGCTAGCTATAAAC 60.367 52.174 19.38 9.70 37.29 2.01
862 1119 2.820787 GGAGAGGCGAGCTAGCTATAAA 59.179 50.000 19.38 0.00 37.29 1.40
863 1120 2.040545 AGGAGAGGCGAGCTAGCTATAA 59.959 50.000 19.38 0.00 37.29 0.98
864 1121 1.631388 AGGAGAGGCGAGCTAGCTATA 59.369 52.381 19.38 0.00 37.29 1.31
866 1123 1.057471 TAGGAGAGGCGAGCTAGCTA 58.943 55.000 19.38 0.00 37.29 3.32
867 1124 0.404040 ATAGGAGAGGCGAGCTAGCT 59.596 55.000 19.45 19.45 37.29 3.32
868 1125 2.116827 TATAGGAGAGGCGAGCTAGC 57.883 55.000 10.75 10.75 0.00 3.42
878 5630 6.155827 GCTTTGCTGTGTCTATATAGGAGAG 58.844 44.000 9.89 6.27 0.00 3.20
879 5631 5.011125 GGCTTTGCTGTGTCTATATAGGAGA 59.989 44.000 9.89 0.00 0.00 3.71
890 5650 0.312102 GAACAGGGCTTTGCTGTGTC 59.688 55.000 0.00 0.00 0.00 3.67
987 5830 2.676632 TGATCATGGTTGCAAATGGC 57.323 45.000 0.00 0.00 45.13 4.40
988 5831 2.933906 GCTTGATCATGGTTGCAAATGG 59.066 45.455 0.00 0.00 0.00 3.16
989 5832 3.616821 CAGCTTGATCATGGTTGCAAATG 59.383 43.478 10.34 2.23 0.00 2.32
990 5833 3.512329 TCAGCTTGATCATGGTTGCAAAT 59.488 39.130 10.34 0.00 0.00 2.32
991 5834 2.892215 TCAGCTTGATCATGGTTGCAAA 59.108 40.909 10.34 0.00 0.00 3.68
992 5835 2.490509 CTCAGCTTGATCATGGTTGCAA 59.509 45.455 10.34 0.00 0.00 4.08
993 5836 2.089201 CTCAGCTTGATCATGGTTGCA 58.911 47.619 10.34 0.00 0.00 4.08
994 5837 1.404391 CCTCAGCTTGATCATGGTTGC 59.596 52.381 10.34 4.25 0.00 4.17
1069 5912 2.513435 GCTGCTGCTCCTGCTACC 60.513 66.667 8.53 0.00 40.48 3.18
1077 5920 2.358369 TCACTGCTGCTGCTGCTC 60.358 61.111 27.67 8.99 41.07 4.26
1404 12358 0.824759 GTATGTGAGAGAAGCCCCGT 59.175 55.000 0.00 0.00 0.00 5.28
1464 12422 2.641815 AGATGAGTGCTTGGGGGATATC 59.358 50.000 0.00 0.00 0.00 1.63
1491 12498 5.209944 GCATGTGCTTACTACACTTTCTC 57.790 43.478 0.00 0.00 38.86 2.87
1553 12767 6.748198 GCTGTGAATCTACTTGTACTACTGAC 59.252 42.308 0.00 0.00 0.00 3.51
1555 12769 6.621613 TGCTGTGAATCTACTTGTACTACTG 58.378 40.000 0.00 0.00 0.00 2.74
1565 12780 7.288852 AGGTATCATAGTTGCTGTGAATCTACT 59.711 37.037 0.05 0.00 35.41 2.57
1586 12801 5.468658 AGATGGAACTAGCCAACTAGGTAT 58.531 41.667 5.19 0.00 46.78 2.73
1627 12848 6.071784 TGCTCCGTAACTAGTTTCAGTATTCA 60.072 38.462 14.49 0.84 0.00 2.57
1631 12852 5.909621 ATGCTCCGTAACTAGTTTCAGTA 57.090 39.130 14.49 3.36 0.00 2.74
1633 12854 6.481954 AAAATGCTCCGTAACTAGTTTCAG 57.518 37.500 14.49 4.46 0.00 3.02
1640 12861 7.441760 TGTTCTTGTAAAAATGCTCCGTAACTA 59.558 33.333 0.00 0.00 0.00 2.24
1646 12867 5.519722 AGTTGTTCTTGTAAAAATGCTCCG 58.480 37.500 0.00 0.00 0.00 4.63
1695 12916 1.326245 CGTGCAGACTCGTGTCAAAAA 59.674 47.619 18.92 0.08 45.20 1.94
1702 15032 2.430921 GGGACGTGCAGACTCGTG 60.431 66.667 9.96 0.00 45.27 4.35
1704 15034 2.126307 CAGGGACGTGCAGACTCG 60.126 66.667 9.96 0.00 38.69 4.18
1705 15035 0.667792 GAACAGGGACGTGCAGACTC 60.668 60.000 9.96 0.00 0.00 3.36
1751 15089 5.071788 TCAACTACTCAACTTGGAGAATGGT 59.928 40.000 0.00 0.00 38.30 3.55
1777 15120 2.279252 GCTCACACCGTCACACGT 60.279 61.111 0.00 0.00 40.58 4.49
1778 15121 2.016704 GAGCTCACACCGTCACACG 61.017 63.158 9.40 0.00 42.11 4.49
1779 15122 1.664965 GGAGCTCACACCGTCACAC 60.665 63.158 17.19 0.00 0.00 3.82
1780 15123 1.832608 AGGAGCTCACACCGTCACA 60.833 57.895 17.19 0.00 0.00 3.58
1781 15124 1.373497 CAGGAGCTCACACCGTCAC 60.373 63.158 17.19 0.00 0.00 3.67
1782 15125 1.112916 TTCAGGAGCTCACACCGTCA 61.113 55.000 17.19 0.00 0.00 4.35
1783 15126 0.667792 GTTCAGGAGCTCACACCGTC 60.668 60.000 17.19 0.00 0.00 4.79
1784 15127 1.367840 GTTCAGGAGCTCACACCGT 59.632 57.895 17.19 0.00 0.00 4.83
1786 15129 0.398318 AAGGTTCAGGAGCTCACACC 59.602 55.000 17.19 14.45 34.30 4.16
1868 15226 7.747155 TCCTTGTCATCGGTTGTTTTATTAA 57.253 32.000 0.00 0.00 0.00 1.40
1881 15239 1.931841 CAGCACAGATCCTTGTCATCG 59.068 52.381 0.00 0.00 0.00 3.84
1910 15268 7.403231 TCCATGATTTAGTAAGGAAGAAGGAGT 59.597 37.037 0.00 0.00 0.00 3.85
1952 15426 5.355596 TGTCCGTGCATTTTCTTGAAAAAT 58.644 33.333 11.78 0.00 0.00 1.82
1992 15467 1.980772 GGAAGCCTGCCACATTGCT 60.981 57.895 0.00 0.00 35.08 3.91
2186 15765 7.067859 CACATGTTAGACCTTGATCCAATGAAT 59.932 37.037 0.00 0.00 0.00 2.57
2335 19236 0.178858 TGTCCCTCACCCCAACCATA 60.179 55.000 0.00 0.00 0.00 2.74
2551 19515 2.557056 CCATGCATCAGCTCCCAAATAG 59.443 50.000 0.00 0.00 42.74 1.73
2779 19766 4.705991 TGTTAACATGCATGACATCCACAT 59.294 37.500 32.75 4.13 36.64 3.21
2808 19799 2.497675 TCTAAGCTTGCACTCTCCGATT 59.502 45.455 9.86 0.00 0.00 3.34
2869 19916 8.299570 GTTGACAAATCTCATCCACAACTTAAT 58.700 33.333 0.00 0.00 35.20 1.40
2912 19959 0.657312 TCGCAAGCAACTCAAGTGTG 59.343 50.000 0.00 0.00 37.18 3.82
3004 20051 1.069668 ACACGTGGGTAAGAGTTGGTC 59.930 52.381 21.57 0.00 0.00 4.02
3006 20053 1.069513 TGACACGTGGGTAAGAGTTGG 59.930 52.381 21.57 0.00 0.00 3.77
3088 20400 1.879796 CGCCAACTTCTTCAGGAGCTT 60.880 52.381 0.00 0.00 0.00 3.74
3108 20420 2.987821 GTTGTCGAGACCTCTTAGTTGC 59.012 50.000 0.34 0.00 0.00 4.17
3125 20437 0.038526 GTCGTCACCCATCTCGTTGT 60.039 55.000 0.00 0.00 0.00 3.32
3155 20633 1.111116 TCCTGGTTGAACGTCGAGGT 61.111 55.000 4.63 4.63 32.65 3.85
3161 20639 4.885325 ACTTATTGTTTCCTGGTTGAACGT 59.115 37.500 0.00 0.00 0.00 3.99
3164 20642 8.973182 ACTTTAACTTATTGTTTCCTGGTTGAA 58.027 29.630 0.00 0.00 39.89 2.69
3171 20649 8.895737 TGTCGAAACTTTAACTTATTGTTTCCT 58.104 29.630 14.75 0.00 41.69 3.36
3249 20727 1.001924 CCGATCATCCTGACACTCGAG 60.002 57.143 11.84 11.84 30.48 4.04
3297 20775 1.290134 CCCTTTTGCTCCCTCTACCT 58.710 55.000 0.00 0.00 0.00 3.08
3298 20776 0.992695 ACCCTTTTGCTCCCTCTACC 59.007 55.000 0.00 0.00 0.00 3.18
3357 20835 9.449719 ACTTTAATCTAATCAAAAGGATCGTGT 57.550 29.630 0.00 0.00 34.28 4.49
3358 20836 9.708222 CACTTTAATCTAATCAAAAGGATCGTG 57.292 33.333 0.00 0.00 34.28 4.35
3413 20891 5.163854 CCGAACTCTCATACATTGTTCAACC 60.164 44.000 0.00 0.00 37.46 3.77
3433 20911 1.079405 GACCATTGCTCGTCCCGAA 60.079 57.895 0.00 0.00 34.74 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.