Multiple sequence alignment - TraesCS2B01G360600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G360600 chr2B 100.000 2890 0 0 1 2890 513679848 513682737 0.000000e+00 5337.0
1 TraesCS2B01G360600 chr2B 88.275 597 48 10 710 1293 513695041 513695628 0.000000e+00 695.0
2 TraesCS2B01G360600 chr2B 81.870 877 95 31 1410 2267 513696341 513697172 0.000000e+00 680.0
3 TraesCS2B01G360600 chr2B 93.563 435 27 1 2 436 651356449 651356882 0.000000e+00 647.0
4 TraesCS2B01G360600 chr2B 84.672 548 38 18 748 1293 513706317 513706820 3.320000e-139 505.0
5 TraesCS2B01G360600 chr2B 80.591 474 47 24 1807 2267 513708568 513709009 9.990000e-85 324.0
6 TraesCS2B01G360600 chr2B 94.340 53 2 1 2301 2352 513709019 513709071 2.390000e-11 80.5
7 TraesCS2B01G360600 chr2D 90.134 2240 133 37 672 2890 435196529 435198701 0.000000e+00 2832.0
8 TraesCS2B01G360600 chr2D 86.603 627 50 18 672 1293 435221589 435222186 0.000000e+00 662.0
9 TraesCS2B01G360600 chr2D 80.104 965 113 43 1410 2358 435224442 435225343 0.000000e+00 645.0
10 TraesCS2B01G360600 chr2D 83.042 401 41 13 1410 1804 435308381 435308760 3.570000e-89 339.0
11 TraesCS2B01G360600 chr2D 82.367 431 21 21 746 1168 435275331 435275714 9.990000e-85 324.0
12 TraesCS2B01G360600 chr2D 80.833 240 16 9 451 665 435196191 435196425 8.290000e-36 161.0
13 TraesCS2B01G360600 chr2A 88.484 1511 123 14 1349 2849 551481700 551480231 0.000000e+00 1779.0
14 TraesCS2B01G360600 chr2A 90.476 630 42 9 680 1294 551482751 551482125 0.000000e+00 815.0
15 TraesCS2B01G360600 chr2A 83.145 795 75 31 1514 2267 551372450 551371674 0.000000e+00 671.0
16 TraesCS2B01G360600 chr2A 80.130 926 113 44 1369 2267 551462331 551461450 2.450000e-175 625.0
17 TraesCS2B01G360600 chr2A 86.726 565 56 10 746 1293 551469470 551468908 6.850000e-171 610.0
18 TraesCS2B01G360600 chr2A 86.679 548 45 14 747 1293 551463381 551462861 1.490000e-162 582.0
19 TraesCS2B01G360600 chr2A 84.882 549 37 12 752 1293 551373604 551373095 1.990000e-141 512.0
20 TraesCS2B01G360600 chr2A 81.874 651 79 26 1410 2030 551468214 551467573 1.990000e-141 512.0
21 TraesCS2B01G360600 chr2A 92.484 306 20 1 991 1293 551451584 551451279 4.420000e-118 435.0
22 TraesCS2B01G360600 chr2A 91.083 314 27 1 1620 1933 551446910 551446598 9.570000e-115 424.0
23 TraesCS2B01G360600 chr2A 81.560 141 19 4 1410 1546 551450502 551450365 3.040000e-20 110.0
24 TraesCS2B01G360600 chr5D 92.874 435 28 2 2 435 377727040 377727472 1.890000e-176 628.0
25 TraesCS2B01G360600 chr5D 92.166 434 32 2 2 435 395296678 395297109 1.900000e-171 612.0
26 TraesCS2B01G360600 chr3D 92.466 438 29 3 2 437 29694299 29693864 8.790000e-175 623.0
27 TraesCS2B01G360600 chr3D 92.396 434 31 2 2 435 448746632 448746201 4.090000e-173 617.0
28 TraesCS2B01G360600 chr3D 92.396 434 31 2 2 435 519298251 519298682 4.090000e-173 617.0
29 TraesCS2B01G360600 chr3D 91.855 442 30 4 2 438 32346022 32346462 1.900000e-171 612.0
30 TraesCS2B01G360600 chr7D 92.627 434 29 3 2 435 148304089 148304519 3.160000e-174 621.0
31 TraesCS2B01G360600 chr7A 92.431 436 28 4 2 437 324584924 324585354 4.090000e-173 617.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G360600 chr2B 513679848 513682737 2889 False 5337.000000 5337 100.000000 1 2890 1 chr2B.!!$F1 2889
1 TraesCS2B01G360600 chr2B 513695041 513697172 2131 False 687.500000 695 85.072500 710 2267 2 chr2B.!!$F3 1557
2 TraesCS2B01G360600 chr2B 513706317 513709071 2754 False 303.166667 505 86.534333 748 2352 3 chr2B.!!$F4 1604
3 TraesCS2B01G360600 chr2D 435196191 435198701 2510 False 1496.500000 2832 85.483500 451 2890 2 chr2D.!!$F3 2439
4 TraesCS2B01G360600 chr2D 435221589 435225343 3754 False 653.500000 662 83.353500 672 2358 2 chr2D.!!$F4 1686
5 TraesCS2B01G360600 chr2A 551480231 551482751 2520 True 1297.000000 1779 89.480000 680 2849 2 chr2A.!!$R5 2169
6 TraesCS2B01G360600 chr2A 551461450 551463381 1931 True 603.500000 625 83.404500 747 2267 2 chr2A.!!$R3 1520
7 TraesCS2B01G360600 chr2A 551371674 551373604 1930 True 591.500000 671 84.013500 752 2267 2 chr2A.!!$R1 1515
8 TraesCS2B01G360600 chr2A 551467573 551469470 1897 True 561.000000 610 84.300000 746 2030 2 chr2A.!!$R4 1284
9 TraesCS2B01G360600 chr2A 551446598 551451584 4986 True 323.000000 435 88.375667 991 1933 3 chr2A.!!$R2 942

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
355 356 0.168128 CCGAACTGCCGGTTGATTTC 59.832 55.0 1.90 0.00 44.23 2.17 F
879 1009 0.263172 TGCCTCCCTCTAGCTAGCTT 59.737 55.0 24.88 7.25 0.00 3.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1745 8554 0.613572 TCATGTGGAGGTGGTCGCTA 60.614 55.0 0.0 0.0 0.0 4.26 R
2849 9706 0.036010 AGTCCATGCTCCAACGAAGG 60.036 55.0 0.0 0.0 0.0 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 7.760131 TCGGAGTTATGGTTTAAAAGATACG 57.240 36.000 0.00 0.00 0.00 3.06
63 64 7.322664 TCGGAGTTATGGTTTAAAAGATACGT 58.677 34.615 0.00 0.00 0.00 3.57
64 65 8.465999 TCGGAGTTATGGTTTAAAAGATACGTA 58.534 33.333 0.00 0.00 0.00 3.57
65 66 9.252962 CGGAGTTATGGTTTAAAAGATACGTAT 57.747 33.333 8.05 8.05 0.00 3.06
210 211 6.887626 ACATGTTTAAATTGGAGTAACGGT 57.112 33.333 0.00 0.00 0.00 4.83
211 212 7.279750 ACATGTTTAAATTGGAGTAACGGTT 57.720 32.000 0.00 0.00 0.00 4.44
212 213 7.718525 ACATGTTTAAATTGGAGTAACGGTTT 58.281 30.769 0.00 0.00 0.00 3.27
213 214 8.848182 ACATGTTTAAATTGGAGTAACGGTTTA 58.152 29.630 0.00 0.00 0.00 2.01
214 215 9.680315 CATGTTTAAATTGGAGTAACGGTTTAA 57.320 29.630 0.00 0.00 0.00 1.52
223 224 7.852971 TGGAGTAACGGTTTAAAAGATATGG 57.147 36.000 0.00 0.00 0.00 2.74
224 225 7.622713 TGGAGTAACGGTTTAAAAGATATGGA 58.377 34.615 0.00 0.00 0.00 3.41
225 226 8.269317 TGGAGTAACGGTTTAAAAGATATGGAT 58.731 33.333 0.00 0.00 0.00 3.41
226 227 8.557029 GGAGTAACGGTTTAAAAGATATGGATG 58.443 37.037 0.00 0.00 0.00 3.51
227 228 8.446599 AGTAACGGTTTAAAAGATATGGATGG 57.553 34.615 0.00 0.00 0.00 3.51
228 229 8.050930 AGTAACGGTTTAAAAGATATGGATGGT 58.949 33.333 0.00 0.00 0.00 3.55
229 230 7.712204 AACGGTTTAAAAGATATGGATGGTT 57.288 32.000 0.00 0.00 0.00 3.67
230 231 7.712204 ACGGTTTAAAAGATATGGATGGTTT 57.288 32.000 0.00 0.00 0.00 3.27
231 232 8.810990 ACGGTTTAAAAGATATGGATGGTTTA 57.189 30.769 0.00 0.00 0.00 2.01
232 233 8.899771 ACGGTTTAAAAGATATGGATGGTTTAG 58.100 33.333 0.00 0.00 0.00 1.85
233 234 9.116067 CGGTTTAAAAGATATGGATGGTTTAGA 57.884 33.333 0.00 0.00 0.00 2.10
239 240 8.593945 AAAGATATGGATGGTTTAGAAAAGCA 57.406 30.769 6.72 6.72 0.00 3.91
240 241 8.773033 AAGATATGGATGGTTTAGAAAAGCAT 57.227 30.769 14.86 14.86 40.61 3.79
241 242 8.773033 AGATATGGATGGTTTAGAAAAGCATT 57.227 30.769 15.76 5.78 38.34 3.56
242 243 9.205513 AGATATGGATGGTTTAGAAAAGCATTT 57.794 29.630 15.76 8.69 42.41 2.32
243 244 9.252962 GATATGGATGGTTTAGAAAAGCATTTG 57.747 33.333 15.76 0.00 39.02 2.32
244 245 6.418057 TGGATGGTTTAGAAAAGCATTTGT 57.582 33.333 15.76 0.00 39.02 2.83
245 246 6.825610 TGGATGGTTTAGAAAAGCATTTGTT 58.174 32.000 15.76 0.00 39.02 2.83
246 247 7.278875 TGGATGGTTTAGAAAAGCATTTGTTT 58.721 30.769 15.76 0.00 39.02 2.83
247 248 7.226325 TGGATGGTTTAGAAAAGCATTTGTTTG 59.774 33.333 15.76 0.00 39.02 2.93
248 249 7.440856 GGATGGTTTAGAAAAGCATTTGTTTGA 59.559 33.333 15.76 0.00 39.02 2.69
249 250 7.532682 TGGTTTAGAAAAGCATTTGTTTGAC 57.467 32.000 0.00 0.00 39.02 3.18
250 251 7.327214 TGGTTTAGAAAAGCATTTGTTTGACT 58.673 30.769 0.00 0.00 39.02 3.41
251 252 7.821846 TGGTTTAGAAAAGCATTTGTTTGACTT 59.178 29.630 0.00 0.00 39.02 3.01
252 253 9.308318 GGTTTAGAAAAGCATTTGTTTGACTTA 57.692 29.630 0.00 0.00 39.02 2.24
262 263 9.807649 AGCATTTGTTTGACTTAAATATGATCC 57.192 29.630 0.00 0.00 0.00 3.36
263 264 8.745837 GCATTTGTTTGACTTAAATATGATCCG 58.254 33.333 0.00 0.00 0.00 4.18
264 265 8.745837 CATTTGTTTGACTTAAATATGATCCGC 58.254 33.333 0.00 0.00 0.00 5.54
265 266 6.993786 TGTTTGACTTAAATATGATCCGCA 57.006 33.333 0.00 0.00 0.00 5.69
266 267 7.015226 TGTTTGACTTAAATATGATCCGCAG 57.985 36.000 0.00 0.00 0.00 5.18
267 268 6.821160 TGTTTGACTTAAATATGATCCGCAGA 59.179 34.615 0.00 0.00 0.00 4.26
268 269 7.498900 TGTTTGACTTAAATATGATCCGCAGAT 59.501 33.333 0.00 0.00 34.57 2.90
269 270 7.425577 TTGACTTAAATATGATCCGCAGATG 57.574 36.000 0.00 0.00 30.90 2.90
270 271 5.934043 TGACTTAAATATGATCCGCAGATGG 59.066 40.000 0.00 0.00 30.90 3.51
271 272 6.114187 ACTTAAATATGATCCGCAGATGGA 57.886 37.500 0.00 0.00 43.58 3.41
272 273 6.533730 ACTTAAATATGATCCGCAGATGGAA 58.466 36.000 0.00 0.00 42.46 3.53
273 274 7.170965 ACTTAAATATGATCCGCAGATGGAAT 58.829 34.615 0.00 0.00 42.46 3.01
274 275 8.321353 ACTTAAATATGATCCGCAGATGGAATA 58.679 33.333 0.00 0.00 42.46 1.75
275 276 6.992063 AAATATGATCCGCAGATGGAATAC 57.008 37.500 0.00 0.00 42.46 1.89
276 277 2.839486 TGATCCGCAGATGGAATACC 57.161 50.000 0.00 0.00 42.46 2.73
277 278 2.329267 TGATCCGCAGATGGAATACCT 58.671 47.619 0.00 0.00 42.46 3.08
278 279 3.506398 TGATCCGCAGATGGAATACCTA 58.494 45.455 0.00 0.00 42.46 3.08
279 280 3.901222 TGATCCGCAGATGGAATACCTAA 59.099 43.478 0.00 0.00 42.46 2.69
280 281 4.346709 TGATCCGCAGATGGAATACCTAAA 59.653 41.667 0.00 0.00 42.46 1.85
281 282 4.336889 TCCGCAGATGGAATACCTAAAG 57.663 45.455 0.00 0.00 34.30 1.85
282 283 3.964688 TCCGCAGATGGAATACCTAAAGA 59.035 43.478 0.00 0.00 34.30 2.52
283 284 4.039245 TCCGCAGATGGAATACCTAAAGAG 59.961 45.833 0.00 0.00 34.30 2.85
284 285 4.202264 CCGCAGATGGAATACCTAAAGAGT 60.202 45.833 0.00 0.00 37.04 3.24
285 286 4.985409 CGCAGATGGAATACCTAAAGAGTC 59.015 45.833 0.00 0.00 37.04 3.36
286 287 5.451937 CGCAGATGGAATACCTAAAGAGTCA 60.452 44.000 0.00 0.00 37.04 3.41
287 288 5.988561 GCAGATGGAATACCTAAAGAGTCAG 59.011 44.000 0.00 0.00 37.04 3.51
288 289 6.520272 CAGATGGAATACCTAAAGAGTCAGG 58.480 44.000 0.00 0.00 37.97 3.86
289 290 5.604650 AGATGGAATACCTAAAGAGTCAGGG 59.395 44.000 0.00 0.00 36.15 4.45
290 291 4.037927 TGGAATACCTAAAGAGTCAGGGG 58.962 47.826 0.00 0.00 36.15 4.79
291 292 3.391626 GGAATACCTAAAGAGTCAGGGGG 59.608 52.174 0.00 0.00 36.15 5.40
325 326 9.989869 AAAAATTGTAAAAATAACGGTTTGGTG 57.010 25.926 0.00 0.00 0.00 4.17
326 327 8.719560 AAATTGTAAAAATAACGGTTTGGTGT 57.280 26.923 0.00 0.00 0.00 4.16
327 328 7.701809 ATTGTAAAAATAACGGTTTGGTGTG 57.298 32.000 0.00 0.00 0.00 3.82
328 329 6.205101 TGTAAAAATAACGGTTTGGTGTGT 57.795 33.333 0.00 0.00 0.00 3.72
329 330 6.264088 TGTAAAAATAACGGTTTGGTGTGTC 58.736 36.000 0.00 0.00 0.00 3.67
330 331 5.585820 AAAAATAACGGTTTGGTGTGTCT 57.414 34.783 0.00 0.00 0.00 3.41
331 332 5.585820 AAAATAACGGTTTGGTGTGTCTT 57.414 34.783 0.00 0.00 0.00 3.01
332 333 6.696441 AAAATAACGGTTTGGTGTGTCTTA 57.304 33.333 0.00 0.00 0.00 2.10
333 334 6.696441 AAATAACGGTTTGGTGTGTCTTAA 57.304 33.333 0.00 0.00 0.00 1.85
334 335 6.696441 AATAACGGTTTGGTGTGTCTTAAA 57.304 33.333 0.00 0.00 0.00 1.52
335 336 6.887626 ATAACGGTTTGGTGTGTCTTAAAT 57.112 33.333 0.00 0.00 0.00 1.40
336 337 4.823790 ACGGTTTGGTGTGTCTTAAATC 57.176 40.909 0.00 0.00 0.00 2.17
337 338 3.566742 ACGGTTTGGTGTGTCTTAAATCC 59.433 43.478 0.00 0.00 0.00 3.01
338 339 3.364565 CGGTTTGGTGTGTCTTAAATCCG 60.365 47.826 0.00 0.00 0.00 4.18
339 340 3.816523 GGTTTGGTGTGTCTTAAATCCGA 59.183 43.478 0.00 0.00 0.00 4.55
340 341 4.276431 GGTTTGGTGTGTCTTAAATCCGAA 59.724 41.667 0.00 0.00 0.00 4.30
341 342 5.209977 GTTTGGTGTGTCTTAAATCCGAAC 58.790 41.667 0.00 0.00 33.93 3.95
342 343 4.345859 TGGTGTGTCTTAAATCCGAACT 57.654 40.909 0.00 0.00 0.00 3.01
343 344 4.062293 TGGTGTGTCTTAAATCCGAACTG 58.938 43.478 0.00 0.00 0.00 3.16
344 345 3.120304 GGTGTGTCTTAAATCCGAACTGC 60.120 47.826 0.00 0.00 0.00 4.40
345 346 3.071479 TGTGTCTTAAATCCGAACTGCC 58.929 45.455 0.00 0.00 0.00 4.85
346 347 2.093783 GTGTCTTAAATCCGAACTGCCG 59.906 50.000 0.00 0.00 0.00 5.69
353 354 3.981308 CCGAACTGCCGGTTGATT 58.019 55.556 1.90 0.00 44.23 2.57
354 355 2.253513 CCGAACTGCCGGTTGATTT 58.746 52.632 1.90 0.00 44.23 2.17
355 356 0.168128 CCGAACTGCCGGTTGATTTC 59.832 55.000 1.90 0.00 44.23 2.17
356 357 0.871722 CGAACTGCCGGTTGATTTCA 59.128 50.000 1.90 0.00 38.41 2.69
357 358 1.468520 CGAACTGCCGGTTGATTTCAT 59.531 47.619 1.90 0.00 38.41 2.57
358 359 2.728846 CGAACTGCCGGTTGATTTCATG 60.729 50.000 1.90 0.00 38.41 3.07
359 360 2.198827 ACTGCCGGTTGATTTCATGA 57.801 45.000 1.90 0.00 0.00 3.07
360 361 2.513753 ACTGCCGGTTGATTTCATGAA 58.486 42.857 3.38 3.38 0.00 2.57
361 362 2.890311 ACTGCCGGTTGATTTCATGAAA 59.110 40.909 22.52 22.52 34.46 2.69
362 363 3.320541 ACTGCCGGTTGATTTCATGAAAA 59.679 39.130 23.91 6.72 33.56 2.29
363 364 4.021192 ACTGCCGGTTGATTTCATGAAAAT 60.021 37.500 23.91 12.81 40.34 1.82
364 365 4.244066 TGCCGGTTGATTTCATGAAAATG 58.756 39.130 23.91 10.35 37.70 2.32
365 366 4.244862 GCCGGTTGATTTCATGAAAATGT 58.755 39.130 23.91 8.69 37.70 2.71
366 367 5.047731 TGCCGGTTGATTTCATGAAAATGTA 60.048 36.000 23.91 8.61 37.70 2.29
367 368 5.866633 GCCGGTTGATTTCATGAAAATGTAA 59.133 36.000 23.91 13.47 37.70 2.41
368 369 6.034898 GCCGGTTGATTTCATGAAAATGTAAG 59.965 38.462 23.91 13.96 37.70 2.34
369 370 6.531240 CCGGTTGATTTCATGAAAATGTAAGG 59.469 38.462 23.91 18.19 37.70 2.69
370 371 6.531240 CGGTTGATTTCATGAAAATGTAAGGG 59.469 38.462 23.91 6.96 37.70 3.95
371 372 6.313658 GGTTGATTTCATGAAAATGTAAGGGC 59.686 38.462 23.91 8.13 37.70 5.19
372 373 6.855763 TGATTTCATGAAAATGTAAGGGCT 57.144 33.333 23.91 4.22 37.70 5.19
373 374 6.866480 TGATTTCATGAAAATGTAAGGGCTC 58.134 36.000 23.91 13.17 37.70 4.70
374 375 6.664816 TGATTTCATGAAAATGTAAGGGCTCT 59.335 34.615 23.91 3.49 37.70 4.09
375 376 6.916360 TTTCATGAAAATGTAAGGGCTCTT 57.084 33.333 18.45 3.26 37.03 2.85
376 377 6.916360 TTCATGAAAATGTAAGGGCTCTTT 57.084 33.333 2.94 0.00 34.59 2.52
377 378 6.916360 TCATGAAAATGTAAGGGCTCTTTT 57.084 33.333 2.94 0.00 34.59 2.27
378 379 6.690530 TCATGAAAATGTAAGGGCTCTTTTG 58.309 36.000 2.94 0.00 34.59 2.44
379 380 4.881920 TGAAAATGTAAGGGCTCTTTTGC 58.118 39.130 2.94 0.00 34.59 3.68
380 381 4.343526 TGAAAATGTAAGGGCTCTTTTGCA 59.656 37.500 2.94 1.92 34.59 4.08
381 382 4.953940 AAATGTAAGGGCTCTTTTGCAA 57.046 36.364 2.94 0.00 34.59 4.08
382 383 4.953940 AATGTAAGGGCTCTTTTGCAAA 57.046 36.364 2.94 8.05 34.59 3.68
383 384 5.488262 AATGTAAGGGCTCTTTTGCAAAT 57.512 34.783 13.65 0.00 34.59 2.32
384 385 4.953940 TGTAAGGGCTCTTTTGCAAATT 57.046 36.364 13.65 4.96 34.59 1.82
385 386 4.630111 TGTAAGGGCTCTTTTGCAAATTG 58.370 39.130 13.65 9.36 34.59 2.32
386 387 4.343526 TGTAAGGGCTCTTTTGCAAATTGA 59.656 37.500 13.65 13.06 34.59 2.57
387 388 3.391506 AGGGCTCTTTTGCAAATTGAC 57.608 42.857 13.65 8.19 34.04 3.18
388 389 2.061028 GGGCTCTTTTGCAAATTGACG 58.939 47.619 13.65 9.37 34.04 4.35
389 390 1.456923 GGCTCTTTTGCAAATTGACGC 59.543 47.619 13.65 16.55 34.04 5.19
390 391 1.123038 GCTCTTTTGCAAATTGACGCG 59.877 47.619 13.65 3.53 0.00 6.01
391 392 2.649516 CTCTTTTGCAAATTGACGCGA 58.350 42.857 15.93 0.00 0.00 5.87
392 393 2.380660 TCTTTTGCAAATTGACGCGAC 58.619 42.857 15.93 7.62 0.00 5.19
393 394 1.116436 TTTTGCAAATTGACGCGACG 58.884 45.000 15.93 0.00 0.00 5.12
394 395 0.305009 TTTGCAAATTGACGCGACGA 59.695 45.000 15.93 7.17 0.00 4.20
395 396 0.305009 TTGCAAATTGACGCGACGAA 59.695 45.000 15.93 4.40 0.00 3.85
396 397 0.383737 TGCAAATTGACGCGACGAAC 60.384 50.000 15.93 0.00 0.00 3.95
397 398 1.378360 GCAAATTGACGCGACGAACG 61.378 55.000 15.93 0.29 45.66 3.95
398 399 0.784250 CAAATTGACGCGACGAACGG 60.784 55.000 15.93 0.00 42.83 4.44
405 406 3.039588 GCGACGAACGGGCAGAAA 61.040 61.111 0.00 0.00 42.83 2.52
406 407 2.851104 CGACGAACGGGCAGAAAC 59.149 61.111 0.00 0.00 38.46 2.78
407 408 2.664436 CGACGAACGGGCAGAAACC 61.664 63.158 0.00 0.00 38.46 3.27
413 414 2.048877 CGGGCAGAAACCGTACGT 60.049 61.111 15.21 0.00 46.03 3.57
414 415 2.377310 CGGGCAGAAACCGTACGTG 61.377 63.158 15.21 6.48 46.03 4.49
415 416 2.674084 GGGCAGAAACCGTACGTGC 61.674 63.158 16.79 16.79 0.00 5.34
416 417 1.666872 GGCAGAAACCGTACGTGCT 60.667 57.895 22.06 4.35 34.46 4.40
417 418 1.226030 GGCAGAAACCGTACGTGCTT 61.226 55.000 22.06 9.87 34.46 3.91
418 419 0.584876 GCAGAAACCGTACGTGCTTT 59.415 50.000 17.53 10.53 0.00 3.51
419 420 1.794116 GCAGAAACCGTACGTGCTTTA 59.206 47.619 17.53 0.00 0.00 1.85
420 421 2.414138 GCAGAAACCGTACGTGCTTTAT 59.586 45.455 17.53 6.19 0.00 1.40
421 422 3.120442 GCAGAAACCGTACGTGCTTTATT 60.120 43.478 17.53 1.86 0.00 1.40
422 423 4.091800 GCAGAAACCGTACGTGCTTTATTA 59.908 41.667 17.53 0.00 0.00 0.98
423 424 5.220529 GCAGAAACCGTACGTGCTTTATTAT 60.221 40.000 17.53 0.00 0.00 1.28
424 425 6.673796 GCAGAAACCGTACGTGCTTTATTATT 60.674 38.462 17.53 0.00 0.00 1.40
425 426 7.464444 GCAGAAACCGTACGTGCTTTATTATTA 60.464 37.037 17.53 0.00 0.00 0.98
426 427 8.054236 CAGAAACCGTACGTGCTTTATTATTAG 58.946 37.037 15.21 0.00 0.00 1.73
427 428 6.833342 AACCGTACGTGCTTTATTATTAGG 57.167 37.500 15.21 0.00 0.00 2.69
428 429 5.906073 ACCGTACGTGCTTTATTATTAGGT 58.094 37.500 15.21 0.00 0.00 3.08
429 430 7.038154 ACCGTACGTGCTTTATTATTAGGTA 57.962 36.000 15.21 0.00 0.00 3.08
430 431 7.141363 ACCGTACGTGCTTTATTATTAGGTAG 58.859 38.462 15.21 0.00 0.00 3.18
431 432 7.013274 ACCGTACGTGCTTTATTATTAGGTAGA 59.987 37.037 15.21 0.00 0.00 2.59
432 433 7.536622 CCGTACGTGCTTTATTATTAGGTAGAG 59.463 40.741 15.21 0.00 0.00 2.43
433 434 8.285394 CGTACGTGCTTTATTATTAGGTAGAGA 58.715 37.037 7.22 0.00 0.00 3.10
470 471 7.834881 AGGAGAACTTGTTATATATCGTCCA 57.165 36.000 0.00 0.00 0.00 4.02
472 473 7.506261 AGGAGAACTTGTTATATATCGTCCAGT 59.494 37.037 0.00 0.00 0.00 4.00
478 479 9.314321 ACTTGTTATATATCGTCCAGTTTTGAG 57.686 33.333 0.00 0.00 0.00 3.02
482 483 8.540492 GTTATATATCGTCCAGTTTTGAGTGTG 58.460 37.037 0.00 0.00 0.00 3.82
496 497 1.873591 GAGTGTGATGCGTGGAACTTT 59.126 47.619 0.00 0.00 31.75 2.66
507 508 6.137794 TGCGTGGAACTTTCTTAAAATTCA 57.862 33.333 0.00 0.00 31.75 2.57
517 518 7.151976 ACTTTCTTAAAATTCATCCGGTTTGG 58.848 34.615 0.00 0.00 40.09 3.28
532 533 3.304391 CGGTTTGGTGTGTTCGATTTGAT 60.304 43.478 0.00 0.00 0.00 2.57
533 534 3.980775 GGTTTGGTGTGTTCGATTTGATG 59.019 43.478 0.00 0.00 0.00 3.07
536 559 4.683501 TGGTGTGTTCGATTTGATGATG 57.316 40.909 0.00 0.00 0.00 3.07
544 567 3.697982 TCGATTTGATGATGTGCATTGC 58.302 40.909 0.46 0.46 37.34 3.56
557 580 2.813754 GTGCATTGCAGTTGTCCTAAGA 59.186 45.455 12.53 0.00 40.08 2.10
558 581 3.076621 TGCATTGCAGTTGTCCTAAGAG 58.923 45.455 7.38 0.00 33.32 2.85
564 588 4.149598 TGCAGTTGTCCTAAGAGACACTA 58.850 43.478 0.00 0.00 46.18 2.74
566 590 5.246203 TGCAGTTGTCCTAAGAGACACTAAT 59.754 40.000 0.00 0.00 46.18 1.73
574 598 7.093509 TGTCCTAAGAGACACTAATATGTGCAA 60.094 37.037 0.00 0.00 41.78 4.08
576 600 7.764443 TCCTAAGAGACACTAATATGTGCAAAC 59.236 37.037 0.00 0.00 41.30 2.93
578 602 7.744087 AAGAGACACTAATATGTGCAAACAA 57.256 32.000 0.00 0.00 41.30 2.83
625 651 3.643763 GTCAGTGACAGTCTGAAACGAT 58.356 45.455 18.54 0.00 42.42 3.73
626 652 4.612939 CGTCAGTGACAGTCTGAAACGATA 60.613 45.833 22.66 0.00 42.42 2.92
627 653 5.403246 GTCAGTGACAGTCTGAAACGATAT 58.597 41.667 18.54 0.00 42.42 1.63
640 666 7.009357 GTCTGAAACGATATCAGTGGAGTTAAC 59.991 40.741 3.12 0.00 43.77 2.01
649 675 2.507769 GGAGTTAACGCGGGTCCG 60.508 66.667 12.47 4.85 43.09 4.79
665 691 2.731721 CGTGTGTCAGCGCCGTAA 60.732 61.111 2.29 0.00 0.00 3.18
668 694 1.663388 TGTGTCAGCGCCGTAACTG 60.663 57.895 2.29 0.00 35.15 3.16
669 695 1.372499 GTGTCAGCGCCGTAACTGA 60.372 57.895 2.29 0.00 40.54 3.41
670 696 0.736325 GTGTCAGCGCCGTAACTGAT 60.736 55.000 2.29 0.00 44.29 2.90
684 807 6.913673 GCCGTAACTGATTTTGTGTTCTTTTA 59.086 34.615 0.00 0.00 0.00 1.52
704 827 0.608640 TTTCCTCTGTCGGGAAGCTC 59.391 55.000 0.00 0.00 42.79 4.09
777 900 1.598130 GTGCCAAGTTCGCCTGTCT 60.598 57.895 0.00 0.00 0.00 3.41
778 901 1.148273 TGCCAAGTTCGCCTGTCTT 59.852 52.632 0.00 0.00 0.00 3.01
879 1009 0.263172 TGCCTCCCTCTAGCTAGCTT 59.737 55.000 24.88 7.25 0.00 3.74
1023 1182 1.000396 GAAGCTGAGGTGCCCCAAT 60.000 57.895 0.00 0.00 0.00 3.16
1218 1392 3.432051 GAGGGGCGACATCGAGGTG 62.432 68.421 7.79 1.01 43.02 4.00
1221 1395 1.144057 GGGCGACATCGAGGTGATT 59.856 57.895 7.79 0.00 43.02 2.57
1229 1403 4.674362 CGACATCGAGGTGATTACAGTCAA 60.674 45.833 7.79 0.00 43.02 3.18
1310 4550 4.231195 TGAGTAAGTCATAGAGTACCCCCA 59.769 45.833 0.00 0.00 0.00 4.96
1320 4560 3.140143 AGAGTACCCCCATCTTCCTAGA 58.860 50.000 0.00 0.00 34.21 2.43
1337 4593 4.167113 TCCTAGAAGCTCCATCAGTAGAGT 59.833 45.833 0.00 0.00 32.47 3.24
1338 4594 5.369993 TCCTAGAAGCTCCATCAGTAGAGTA 59.630 44.000 0.00 0.00 32.47 2.59
1550 4927 2.467880 AGCGGAACTTTCCTCCATCTA 58.532 47.619 6.45 0.00 45.33 1.98
1552 4929 2.168728 GCGGAACTTTCCTCCATCTAGT 59.831 50.000 6.45 0.00 45.33 2.57
1553 4930 3.383825 GCGGAACTTTCCTCCATCTAGTA 59.616 47.826 6.45 0.00 45.33 1.82
1554 4931 4.737055 GCGGAACTTTCCTCCATCTAGTAC 60.737 50.000 6.45 0.00 45.33 2.73
1556 4933 4.202131 GGAACTTTCCTCCATCTAGTACGG 60.202 50.000 0.34 0.00 44.11 4.02
1640 8449 6.212589 TCTGGATCAAGGTCTAACATGTGTTA 59.787 38.462 0.00 5.57 39.31 2.41
1641 8450 6.957631 TGGATCAAGGTCTAACATGTGTTAT 58.042 36.000 0.00 0.00 39.49 1.89
1642 8451 8.084985 TGGATCAAGGTCTAACATGTGTTATA 57.915 34.615 0.00 0.00 39.49 0.98
1745 8554 1.385206 GGGCAAGGAGAGGGAGGAT 60.385 63.158 0.00 0.00 0.00 3.24
1764 8573 0.613572 TAGCGACCACCTCCACATGA 60.614 55.000 0.00 0.00 0.00 3.07
1775 8584 2.496942 CCACATGATTGGGGTGAGC 58.503 57.895 0.00 0.00 41.96 4.26
1793 8602 0.320421 GCGACAAGGACAAGGTGCTA 60.320 55.000 0.00 0.00 31.83 3.49
2039 8875 3.866651 TCCTGCTGATCAGTTCTTAAGC 58.133 45.455 23.38 8.37 41.25 3.09
2041 8877 4.080695 TCCTGCTGATCAGTTCTTAAGCAT 60.081 41.667 23.38 0.00 41.25 3.79
2049 8885 5.426689 TCAGTTCTTAAGCATCACTCCAT 57.573 39.130 0.00 0.00 0.00 3.41
2212 9058 4.952335 CCTCCAGGAATTGCAAGTCTAATT 59.048 41.667 24.47 3.55 37.39 1.40
2213 9059 6.069673 TCCTCCAGGAATTGCAAGTCTAATTA 60.070 38.462 24.47 7.81 42.18 1.40
2228 9074 5.698089 AGTCTAATTATGGATGTCATGCGTG 59.302 40.000 9.17 0.00 37.30 5.34
2229 9075 4.996758 TCTAATTATGGATGTCATGCGTGG 59.003 41.667 9.17 0.00 37.30 4.94
2230 9076 2.708216 TTATGGATGTCATGCGTGGT 57.292 45.000 9.17 0.00 37.30 4.16
2231 9077 3.828875 TTATGGATGTCATGCGTGGTA 57.171 42.857 9.17 0.00 37.30 3.25
2272 9125 3.054139 AGAGTGCAATCTTGGATAAGGCA 60.054 43.478 11.63 0.00 34.59 4.75
2307 9160 4.263068 GCATAGTGTGGGCTATATGGAGTT 60.263 45.833 0.00 0.00 31.10 3.01
2358 9211 9.833917 GGATGAGATGTATCAATGTATCATGAT 57.166 33.333 13.81 13.81 39.50 2.45
2387 9240 8.006298 TGAAGTTATGAGACCACATTTTTGTT 57.994 30.769 0.00 0.00 0.00 2.83
2456 9310 2.823747 TGACAGTGTTCGCATAGTACCT 59.176 45.455 0.00 0.00 0.00 3.08
2457 9311 3.179830 GACAGTGTTCGCATAGTACCTG 58.820 50.000 0.00 0.00 0.00 4.00
2476 9333 3.199677 CTGAACAACAACGGTCCAGTAA 58.800 45.455 0.00 0.00 0.00 2.24
2478 9335 3.810941 TGAACAACAACGGTCCAGTAATC 59.189 43.478 0.00 0.00 0.00 1.75
2481 9338 4.563061 ACAACAACGGTCCAGTAATCTAC 58.437 43.478 0.00 0.00 0.00 2.59
2484 9341 5.416271 ACAACGGTCCAGTAATCTACATT 57.584 39.130 0.00 0.00 0.00 2.71
2490 9347 7.110155 ACGGTCCAGTAATCTACATTGATTTT 58.890 34.615 0.00 0.00 37.73 1.82
2528 9385 3.788227 AACTCAAGTTACTGATGGGCA 57.212 42.857 0.00 0.00 36.32 5.36
2529 9386 4.307032 AACTCAAGTTACTGATGGGCAT 57.693 40.909 0.00 0.00 36.32 4.40
2549 9406 2.793288 GGGACGATTTTACCCAGGAA 57.207 50.000 0.00 0.00 42.81 3.36
2551 9408 3.628008 GGGACGATTTTACCCAGGAATT 58.372 45.455 0.00 0.00 42.81 2.17
2552 9409 4.784177 GGGACGATTTTACCCAGGAATTA 58.216 43.478 0.00 0.00 42.81 1.40
2583 9440 5.593095 GGGATTCAAGTAACAACCCTAATCC 59.407 44.000 0.00 0.00 40.14 3.01
2587 9444 3.261981 AGTAACAACCCTAATCCTGCG 57.738 47.619 0.00 0.00 0.00 5.18
2598 9455 1.086696 AATCCTGCGTGTCCGAAATG 58.913 50.000 0.00 0.00 35.63 2.32
2600 9457 0.034198 TCCTGCGTGTCCGAAATGAA 59.966 50.000 0.00 0.00 35.63 2.57
2617 9474 9.958285 CCGAAATGAAATATATCAATGAGTACG 57.042 33.333 0.00 0.00 32.06 3.67
2633 9490 0.546122 TACGAAGTAGGGGTCCGCTA 59.454 55.000 11.54 11.54 45.11 4.26
2643 9500 0.751643 GGGTCCGCTAACATTGGCAT 60.752 55.000 0.75 0.00 33.91 4.40
2665 9522 6.203338 GCATGAAGTCAATGTGAAATTTGGTT 59.797 34.615 0.00 0.00 0.00 3.67
2672 9529 6.420604 GTCAATGTGAAATTTGGTTGTCGATT 59.579 34.615 0.00 0.00 0.00 3.34
2683 9540 2.807392 GGTTGTCGATTTTGACGGGTTA 59.193 45.455 0.00 0.00 41.87 2.85
2697 9554 8.801882 TTTGACGGGTTATCTAAGATTGAATT 57.198 30.769 0.00 0.00 0.00 2.17
2728 9585 2.943036 AAAACTAGGGCTTCGGTTCA 57.057 45.000 0.00 0.00 0.00 3.18
2739 9596 2.605366 GCTTCGGTTCAGTCATCTTAGC 59.395 50.000 0.00 0.00 0.00 3.09
2743 9600 2.674177 CGGTTCAGTCATCTTAGCCGTT 60.674 50.000 0.00 0.00 37.07 4.44
2755 9612 1.629043 TAGCCGTTGTGAAGTCCTCT 58.371 50.000 0.00 0.00 0.00 3.69
2762 9619 2.368875 GTTGTGAAGTCCTCTTCCTGGA 59.631 50.000 0.00 0.00 46.66 3.86
2774 9631 1.691195 TTCCTGGACTTGGCGTGTGA 61.691 55.000 0.00 0.00 0.00 3.58
2793 9650 8.086522 GCGTGTGATTATTTATACCCTCTCTTA 58.913 37.037 0.00 0.00 0.00 2.10
2802 9659 7.573968 TTTATACCCTCTCTTAAGTCGGTAC 57.426 40.000 1.63 0.00 33.21 3.34
2835 9692 2.123589 TCTTGGTCTCCTGGTTGTGAA 58.876 47.619 0.00 0.00 0.00 3.18
2838 9695 1.562008 TGGTCTCCTGGTTGTGAACAA 59.438 47.619 0.00 0.00 0.00 2.83
2853 9710 4.821805 TGTGAACAACTTGATCCTTCCTTC 59.178 41.667 0.00 0.00 0.00 3.46
2861 9718 1.066143 TGATCCTTCCTTCGTTGGAGC 60.066 52.381 0.00 0.00 37.43 4.70
2865 9722 1.089920 CTTCCTTCGTTGGAGCATGG 58.910 55.000 0.00 0.00 37.43 3.66
2866 9723 0.690192 TTCCTTCGTTGGAGCATGGA 59.310 50.000 0.00 0.00 37.43 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.823818 CGTATCTTTTAAACCATAACTCCGATT 58.176 33.333 0.00 0.00 0.00 3.34
37 38 7.983484 ACGTATCTTTTAAACCATAACTCCGAT 59.017 33.333 0.00 0.00 0.00 4.18
38 39 7.322664 ACGTATCTTTTAAACCATAACTCCGA 58.677 34.615 0.00 0.00 0.00 4.55
39 40 7.529880 ACGTATCTTTTAAACCATAACTCCG 57.470 36.000 0.00 0.00 0.00 4.63
184 185 9.016438 ACCGTTACTCCAATTTAAACATGTTAT 57.984 29.630 12.39 5.10 0.00 1.89
185 186 8.393671 ACCGTTACTCCAATTTAAACATGTTA 57.606 30.769 12.39 0.00 0.00 2.41
186 187 7.279750 ACCGTTACTCCAATTTAAACATGTT 57.720 32.000 4.92 4.92 0.00 2.71
187 188 6.887626 ACCGTTACTCCAATTTAAACATGT 57.112 33.333 0.00 0.00 0.00 3.21
188 189 9.680315 TTAAACCGTTACTCCAATTTAAACATG 57.320 29.630 0.00 0.00 0.00 3.21
197 198 8.899771 CCATATCTTTTAAACCGTTACTCCAAT 58.100 33.333 0.00 0.00 0.00 3.16
198 199 8.102047 TCCATATCTTTTAAACCGTTACTCCAA 58.898 33.333 0.00 0.00 0.00 3.53
199 200 7.622713 TCCATATCTTTTAAACCGTTACTCCA 58.377 34.615 0.00 0.00 0.00 3.86
200 201 8.557029 CATCCATATCTTTTAAACCGTTACTCC 58.443 37.037 0.00 0.00 0.00 3.85
201 202 8.557029 CCATCCATATCTTTTAAACCGTTACTC 58.443 37.037 0.00 0.00 0.00 2.59
202 203 8.050930 ACCATCCATATCTTTTAAACCGTTACT 58.949 33.333 0.00 0.00 0.00 2.24
203 204 8.217131 ACCATCCATATCTTTTAAACCGTTAC 57.783 34.615 0.00 0.00 0.00 2.50
204 205 8.810990 AACCATCCATATCTTTTAAACCGTTA 57.189 30.769 0.00 0.00 0.00 3.18
205 206 7.712204 AACCATCCATATCTTTTAAACCGTT 57.288 32.000 0.00 0.00 0.00 4.44
206 207 7.712204 AAACCATCCATATCTTTTAAACCGT 57.288 32.000 0.00 0.00 0.00 4.83
207 208 9.116067 TCTAAACCATCCATATCTTTTAAACCG 57.884 33.333 0.00 0.00 0.00 4.44
213 214 9.034800 TGCTTTTCTAAACCATCCATATCTTTT 57.965 29.630 0.00 0.00 0.00 2.27
214 215 8.593945 TGCTTTTCTAAACCATCCATATCTTT 57.406 30.769 0.00 0.00 0.00 2.52
215 216 8.773033 ATGCTTTTCTAAACCATCCATATCTT 57.227 30.769 0.00 0.00 0.00 2.40
216 217 8.773033 AATGCTTTTCTAAACCATCCATATCT 57.227 30.769 0.00 0.00 0.00 1.98
217 218 9.252962 CAAATGCTTTTCTAAACCATCCATATC 57.747 33.333 0.00 0.00 0.00 1.63
218 219 8.761689 ACAAATGCTTTTCTAAACCATCCATAT 58.238 29.630 0.00 0.00 0.00 1.78
219 220 8.133024 ACAAATGCTTTTCTAAACCATCCATA 57.867 30.769 0.00 0.00 0.00 2.74
220 221 7.008021 ACAAATGCTTTTCTAAACCATCCAT 57.992 32.000 0.00 0.00 0.00 3.41
221 222 6.418057 ACAAATGCTTTTCTAAACCATCCA 57.582 33.333 0.00 0.00 0.00 3.41
222 223 7.440856 TCAAACAAATGCTTTTCTAAACCATCC 59.559 33.333 0.00 0.00 0.00 3.51
223 224 8.275632 GTCAAACAAATGCTTTTCTAAACCATC 58.724 33.333 0.00 0.00 0.00 3.51
224 225 7.986889 AGTCAAACAAATGCTTTTCTAAACCAT 59.013 29.630 0.00 0.00 0.00 3.55
225 226 7.327214 AGTCAAACAAATGCTTTTCTAAACCA 58.673 30.769 0.00 0.00 0.00 3.67
226 227 7.770801 AGTCAAACAAATGCTTTTCTAAACC 57.229 32.000 0.00 0.00 0.00 3.27
236 237 9.807649 GGATCATATTTAAGTCAAACAAATGCT 57.192 29.630 0.00 0.00 0.00 3.79
237 238 8.745837 CGGATCATATTTAAGTCAAACAAATGC 58.254 33.333 0.00 0.00 0.00 3.56
238 239 8.745837 GCGGATCATATTTAAGTCAAACAAATG 58.254 33.333 0.00 0.00 0.00 2.32
239 240 8.465999 TGCGGATCATATTTAAGTCAAACAAAT 58.534 29.630 0.00 0.00 0.00 2.32
240 241 7.821652 TGCGGATCATATTTAAGTCAAACAAA 58.178 30.769 0.00 0.00 0.00 2.83
241 242 7.335673 TCTGCGGATCATATTTAAGTCAAACAA 59.664 33.333 0.00 0.00 0.00 2.83
242 243 6.821160 TCTGCGGATCATATTTAAGTCAAACA 59.179 34.615 0.00 0.00 0.00 2.83
243 244 7.246674 TCTGCGGATCATATTTAAGTCAAAC 57.753 36.000 0.00 0.00 0.00 2.93
244 245 7.041167 CCATCTGCGGATCATATTTAAGTCAAA 60.041 37.037 4.63 0.00 0.00 2.69
245 246 6.427853 CCATCTGCGGATCATATTTAAGTCAA 59.572 38.462 4.63 0.00 0.00 3.18
246 247 5.934043 CCATCTGCGGATCATATTTAAGTCA 59.066 40.000 4.63 0.00 0.00 3.41
247 248 6.166279 TCCATCTGCGGATCATATTTAAGTC 58.834 40.000 4.63 0.00 0.00 3.01
248 249 6.114187 TCCATCTGCGGATCATATTTAAGT 57.886 37.500 4.63 0.00 0.00 2.24
249 250 7.621428 ATTCCATCTGCGGATCATATTTAAG 57.379 36.000 4.63 0.00 34.19 1.85
250 251 7.552687 GGTATTCCATCTGCGGATCATATTTAA 59.447 37.037 4.63 0.00 34.19 1.52
251 252 7.047891 GGTATTCCATCTGCGGATCATATTTA 58.952 38.462 4.63 0.00 34.19 1.40
252 253 5.882557 GGTATTCCATCTGCGGATCATATTT 59.117 40.000 4.63 0.00 34.19 1.40
253 254 5.190528 AGGTATTCCATCTGCGGATCATATT 59.809 40.000 4.63 0.00 34.19 1.28
254 255 4.718774 AGGTATTCCATCTGCGGATCATAT 59.281 41.667 4.63 1.80 34.19 1.78
255 256 4.096681 AGGTATTCCATCTGCGGATCATA 58.903 43.478 4.63 0.00 34.19 2.15
256 257 2.909006 AGGTATTCCATCTGCGGATCAT 59.091 45.455 4.63 0.95 34.19 2.45
257 258 2.329267 AGGTATTCCATCTGCGGATCA 58.671 47.619 4.63 0.00 34.19 2.92
258 259 4.537135 TTAGGTATTCCATCTGCGGATC 57.463 45.455 4.63 0.00 34.19 3.36
259 260 4.593206 TCTTTAGGTATTCCATCTGCGGAT 59.407 41.667 0.90 0.90 34.19 4.18
260 261 3.964688 TCTTTAGGTATTCCATCTGCGGA 59.035 43.478 0.00 0.00 35.89 5.54
261 262 4.202264 ACTCTTTAGGTATTCCATCTGCGG 60.202 45.833 0.00 0.00 35.89 5.69
262 263 4.950050 ACTCTTTAGGTATTCCATCTGCG 58.050 43.478 0.00 0.00 35.89 5.18
263 264 5.918608 TGACTCTTTAGGTATTCCATCTGC 58.081 41.667 0.00 0.00 35.89 4.26
264 265 6.463614 CCCTGACTCTTTAGGTATTCCATCTG 60.464 46.154 0.00 0.00 35.89 2.90
265 266 5.604650 CCCTGACTCTTTAGGTATTCCATCT 59.395 44.000 0.00 0.00 35.89 2.90
266 267 5.221742 CCCCTGACTCTTTAGGTATTCCATC 60.222 48.000 0.00 0.00 35.89 3.51
267 268 4.660771 CCCCTGACTCTTTAGGTATTCCAT 59.339 45.833 0.00 0.00 35.89 3.41
268 269 4.037927 CCCCTGACTCTTTAGGTATTCCA 58.962 47.826 0.00 0.00 35.89 3.53
269 270 3.391626 CCCCCTGACTCTTTAGGTATTCC 59.608 52.174 0.00 0.00 31.99 3.01
270 271 4.691326 CCCCCTGACTCTTTAGGTATTC 57.309 50.000 0.00 0.00 31.99 1.75
299 300 9.989869 CACCAAACCGTTATTTTTACAATTTTT 57.010 25.926 0.00 0.00 0.00 1.94
300 301 9.163899 ACACCAAACCGTTATTTTTACAATTTT 57.836 25.926 0.00 0.00 0.00 1.82
301 302 8.604890 CACACCAAACCGTTATTTTTACAATTT 58.395 29.630 0.00 0.00 0.00 1.82
302 303 7.764901 ACACACCAAACCGTTATTTTTACAATT 59.235 29.630 0.00 0.00 0.00 2.32
303 304 7.266400 ACACACCAAACCGTTATTTTTACAAT 58.734 30.769 0.00 0.00 0.00 2.71
304 305 6.628185 ACACACCAAACCGTTATTTTTACAA 58.372 32.000 0.00 0.00 0.00 2.41
305 306 6.095160 AGACACACCAAACCGTTATTTTTACA 59.905 34.615 0.00 0.00 0.00 2.41
306 307 6.497437 AGACACACCAAACCGTTATTTTTAC 58.503 36.000 0.00 0.00 0.00 2.01
307 308 6.696441 AGACACACCAAACCGTTATTTTTA 57.304 33.333 0.00 0.00 0.00 1.52
308 309 5.585820 AGACACACCAAACCGTTATTTTT 57.414 34.783 0.00 0.00 0.00 1.94
309 310 5.585820 AAGACACACCAAACCGTTATTTT 57.414 34.783 0.00 0.00 0.00 1.82
310 311 6.696441 TTAAGACACACCAAACCGTTATTT 57.304 33.333 0.00 0.00 0.00 1.40
311 312 6.696441 TTTAAGACACACCAAACCGTTATT 57.304 33.333 0.00 0.00 0.00 1.40
312 313 6.072342 GGATTTAAGACACACCAAACCGTTAT 60.072 38.462 0.00 0.00 0.00 1.89
313 314 5.239087 GGATTTAAGACACACCAAACCGTTA 59.761 40.000 0.00 0.00 0.00 3.18
314 315 4.037089 GGATTTAAGACACACCAAACCGTT 59.963 41.667 0.00 0.00 0.00 4.44
315 316 3.566742 GGATTTAAGACACACCAAACCGT 59.433 43.478 0.00 0.00 0.00 4.83
316 317 3.364565 CGGATTTAAGACACACCAAACCG 60.365 47.826 0.00 0.00 0.00 4.44
317 318 3.816523 TCGGATTTAAGACACACCAAACC 59.183 43.478 0.00 0.00 0.00 3.27
318 319 5.008316 AGTTCGGATTTAAGACACACCAAAC 59.992 40.000 0.00 0.00 0.00 2.93
319 320 5.008217 CAGTTCGGATTTAAGACACACCAAA 59.992 40.000 0.00 0.00 0.00 3.28
320 321 4.513692 CAGTTCGGATTTAAGACACACCAA 59.486 41.667 0.00 0.00 0.00 3.67
321 322 4.062293 CAGTTCGGATTTAAGACACACCA 58.938 43.478 0.00 0.00 0.00 4.17
322 323 3.120304 GCAGTTCGGATTTAAGACACACC 60.120 47.826 0.00 0.00 0.00 4.16
323 324 3.120304 GGCAGTTCGGATTTAAGACACAC 60.120 47.826 0.00 0.00 0.00 3.82
324 325 3.071479 GGCAGTTCGGATTTAAGACACA 58.929 45.455 0.00 0.00 0.00 3.72
325 326 2.093783 CGGCAGTTCGGATTTAAGACAC 59.906 50.000 0.00 0.00 0.00 3.67
326 327 2.343101 CGGCAGTTCGGATTTAAGACA 58.657 47.619 0.00 0.00 0.00 3.41
337 338 0.871722 TGAAATCAACCGGCAGTTCG 59.128 50.000 0.00 0.00 36.18 3.95
338 339 2.487762 TCATGAAATCAACCGGCAGTTC 59.512 45.455 0.00 1.15 36.18 3.01
339 340 2.513753 TCATGAAATCAACCGGCAGTT 58.486 42.857 0.00 0.00 40.16 3.16
340 341 2.198827 TCATGAAATCAACCGGCAGT 57.801 45.000 0.00 0.00 0.00 4.40
341 342 3.574284 TTTCATGAAATCAACCGGCAG 57.426 42.857 16.91 0.00 0.00 4.85
342 343 4.244066 CATTTTCATGAAATCAACCGGCA 58.756 39.130 21.10 3.92 35.79 5.69
343 344 4.244862 ACATTTTCATGAAATCAACCGGC 58.755 39.130 21.10 0.00 35.79 6.13
344 345 6.531240 CCTTACATTTTCATGAAATCAACCGG 59.469 38.462 21.10 13.71 35.79 5.28
345 346 6.531240 CCCTTACATTTTCATGAAATCAACCG 59.469 38.462 21.10 9.23 35.79 4.44
346 347 6.313658 GCCCTTACATTTTCATGAAATCAACC 59.686 38.462 21.10 1.81 35.79 3.77
347 348 7.099120 AGCCCTTACATTTTCATGAAATCAAC 58.901 34.615 21.10 5.29 35.79 3.18
348 349 7.178983 AGAGCCCTTACATTTTCATGAAATCAA 59.821 33.333 21.10 7.58 35.79 2.57
349 350 6.664816 AGAGCCCTTACATTTTCATGAAATCA 59.335 34.615 21.10 8.32 35.79 2.57
350 351 7.105241 AGAGCCCTTACATTTTCATGAAATC 57.895 36.000 21.10 11.45 35.79 2.17
351 352 7.486407 AAGAGCCCTTACATTTTCATGAAAT 57.514 32.000 21.10 9.60 38.49 2.17
352 353 6.916360 AAGAGCCCTTACATTTTCATGAAA 57.084 33.333 16.91 16.91 34.11 2.69
353 354 6.916360 AAAGAGCCCTTACATTTTCATGAA 57.084 33.333 3.38 3.38 34.11 2.57
354 355 6.690530 CAAAAGAGCCCTTACATTTTCATGA 58.309 36.000 0.00 0.00 34.11 3.07
355 356 5.349543 GCAAAAGAGCCCTTACATTTTCATG 59.650 40.000 0.00 0.00 36.34 3.07
356 357 5.011943 TGCAAAAGAGCCCTTACATTTTCAT 59.988 36.000 0.00 0.00 31.15 2.57
357 358 4.343526 TGCAAAAGAGCCCTTACATTTTCA 59.656 37.500 0.00 0.00 31.15 2.69
358 359 4.881920 TGCAAAAGAGCCCTTACATTTTC 58.118 39.130 0.00 0.00 31.15 2.29
359 360 4.953940 TGCAAAAGAGCCCTTACATTTT 57.046 36.364 0.00 0.00 31.15 1.82
360 361 4.953940 TTGCAAAAGAGCCCTTACATTT 57.046 36.364 0.00 0.00 31.15 2.32
361 362 4.953940 TTTGCAAAAGAGCCCTTACATT 57.046 36.364 10.02 0.00 31.15 2.71
362 363 5.011943 TCAATTTGCAAAAGAGCCCTTACAT 59.988 36.000 17.19 0.00 31.15 2.29
363 364 4.343526 TCAATTTGCAAAAGAGCCCTTACA 59.656 37.500 17.19 0.00 31.15 2.41
364 365 4.686091 GTCAATTTGCAAAAGAGCCCTTAC 59.314 41.667 17.19 1.17 31.15 2.34
365 366 4.558496 CGTCAATTTGCAAAAGAGCCCTTA 60.558 41.667 17.19 0.00 31.15 2.69
366 367 3.732212 GTCAATTTGCAAAAGAGCCCTT 58.268 40.909 17.19 0.68 0.00 3.95
367 368 2.288395 CGTCAATTTGCAAAAGAGCCCT 60.288 45.455 17.19 0.00 0.00 5.19
368 369 2.061028 CGTCAATTTGCAAAAGAGCCC 58.939 47.619 17.19 5.23 0.00 5.19
369 370 1.456923 GCGTCAATTTGCAAAAGAGCC 59.543 47.619 17.19 7.36 0.00 4.70
370 371 1.123038 CGCGTCAATTTGCAAAAGAGC 59.877 47.619 17.19 18.03 0.00 4.09
371 372 2.401720 GTCGCGTCAATTTGCAAAAGAG 59.598 45.455 17.19 9.10 0.00 2.85
372 373 2.380660 GTCGCGTCAATTTGCAAAAGA 58.619 42.857 17.19 14.22 0.00 2.52
373 374 1.120551 CGTCGCGTCAATTTGCAAAAG 59.879 47.619 17.19 12.03 0.00 2.27
374 375 1.116436 CGTCGCGTCAATTTGCAAAA 58.884 45.000 17.19 0.00 0.00 2.44
375 376 0.305009 TCGTCGCGTCAATTTGCAAA 59.695 45.000 15.44 15.44 0.00 3.68
376 377 0.305009 TTCGTCGCGTCAATTTGCAA 59.695 45.000 5.77 0.00 0.00 4.08
377 378 0.383737 GTTCGTCGCGTCAATTTGCA 60.384 50.000 5.77 0.00 0.00 4.08
378 379 1.378360 CGTTCGTCGCGTCAATTTGC 61.378 55.000 5.77 0.00 0.00 3.68
379 380 0.784250 CCGTTCGTCGCGTCAATTTG 60.784 55.000 5.77 0.00 38.35 2.32
380 381 1.489824 CCGTTCGTCGCGTCAATTT 59.510 52.632 5.77 0.00 38.35 1.82
381 382 2.377310 CCCGTTCGTCGCGTCAATT 61.377 57.895 5.77 0.00 38.35 2.32
382 383 2.807895 CCCGTTCGTCGCGTCAAT 60.808 61.111 5.77 0.00 38.35 2.57
388 389 3.039588 TTTCTGCCCGTTCGTCGC 61.040 61.111 0.00 0.00 38.35 5.19
389 390 2.664436 GGTTTCTGCCCGTTCGTCG 61.664 63.158 0.00 0.00 39.52 5.12
390 391 2.664436 CGGTTTCTGCCCGTTCGTC 61.664 63.158 0.00 0.00 40.59 4.20
391 392 2.663852 CGGTTTCTGCCCGTTCGT 60.664 61.111 0.00 0.00 40.59 3.85
397 398 2.674084 GCACGTACGGTTTCTGCCC 61.674 63.158 21.06 0.00 0.00 5.36
398 399 1.226030 AAGCACGTACGGTTTCTGCC 61.226 55.000 21.06 4.92 0.00 4.85
399 400 0.584876 AAAGCACGTACGGTTTCTGC 59.415 50.000 21.06 18.87 31.13 4.26
400 401 4.657075 AATAAAGCACGTACGGTTTCTG 57.343 40.909 21.06 9.34 37.70 3.02
401 402 6.973229 AATAATAAAGCACGTACGGTTTCT 57.027 33.333 21.06 7.56 37.70 2.52
402 403 7.010460 ACCTAATAATAAAGCACGTACGGTTTC 59.990 37.037 21.06 5.27 37.70 2.78
403 404 6.818142 ACCTAATAATAAAGCACGTACGGTTT 59.182 34.615 21.06 17.02 39.71 3.27
404 405 6.340522 ACCTAATAATAAAGCACGTACGGTT 58.659 36.000 21.06 10.21 0.00 4.44
405 406 5.906073 ACCTAATAATAAAGCACGTACGGT 58.094 37.500 21.06 2.13 0.00 4.83
406 407 7.362662 TCTACCTAATAATAAAGCACGTACGG 58.637 38.462 21.06 9.73 0.00 4.02
407 408 8.285394 TCTCTACCTAATAATAAAGCACGTACG 58.715 37.037 15.01 15.01 0.00 3.67
444 445 9.358406 TGGACGATATATAACAAGTTCTCCTAA 57.642 33.333 0.00 0.00 0.00 2.69
445 446 8.929260 TGGACGATATATAACAAGTTCTCCTA 57.071 34.615 0.00 0.00 0.00 2.94
446 447 7.506261 ACTGGACGATATATAACAAGTTCTCCT 59.494 37.037 0.00 0.00 0.00 3.69
447 448 7.659186 ACTGGACGATATATAACAAGTTCTCC 58.341 38.462 0.00 0.00 0.00 3.71
448 449 9.530633 AAACTGGACGATATATAACAAGTTCTC 57.469 33.333 0.00 0.00 0.00 2.87
449 450 9.886132 AAAACTGGACGATATATAACAAGTTCT 57.114 29.630 0.00 0.00 0.00 3.01
450 451 9.916397 CAAAACTGGACGATATATAACAAGTTC 57.084 33.333 0.00 0.00 0.00 3.01
451 452 9.661563 TCAAAACTGGACGATATATAACAAGTT 57.338 29.630 0.00 0.00 0.00 2.66
452 453 9.314321 CTCAAAACTGGACGATATATAACAAGT 57.686 33.333 0.00 0.00 0.00 3.16
453 454 9.314321 ACTCAAAACTGGACGATATATAACAAG 57.686 33.333 0.00 0.00 0.00 3.16
454 455 9.093970 CACTCAAAACTGGACGATATATAACAA 57.906 33.333 0.00 0.00 0.00 2.83
455 456 8.255206 ACACTCAAAACTGGACGATATATAACA 58.745 33.333 0.00 0.00 0.00 2.41
460 461 6.275494 TCACACTCAAAACTGGACGATATA 57.725 37.500 0.00 0.00 0.00 0.86
470 471 1.603802 CCACGCATCACACTCAAAACT 59.396 47.619 0.00 0.00 0.00 2.66
472 473 1.960417 TCCACGCATCACACTCAAAA 58.040 45.000 0.00 0.00 0.00 2.44
478 479 1.873591 AGAAAGTTCCACGCATCACAC 59.126 47.619 0.00 0.00 0.00 3.82
482 483 6.861055 TGAATTTTAAGAAAGTTCCACGCATC 59.139 34.615 5.17 0.00 0.00 3.91
496 497 5.536916 ACACCAAACCGGATGAATTTTAAGA 59.463 36.000 9.46 0.00 38.63 2.10
507 508 0.107081 TCGAACACACCAAACCGGAT 59.893 50.000 9.46 0.00 38.63 4.18
517 518 3.848019 GCACATCATCAAATCGAACACAC 59.152 43.478 0.00 0.00 0.00 3.82
532 533 1.270274 GGACAACTGCAATGCACATCA 59.730 47.619 2.72 0.00 33.79 3.07
533 534 1.542915 AGGACAACTGCAATGCACATC 59.457 47.619 2.72 0.00 33.79 3.06
536 559 2.813754 TCTTAGGACAACTGCAATGCAC 59.186 45.455 2.72 0.00 33.79 4.57
544 567 8.470805 ACATATTAGTGTCTCTTAGGACAACTG 58.529 37.037 5.39 2.03 46.00 3.16
557 580 8.023128 GTCAATTGTTTGCACATATTAGTGTCT 58.977 33.333 5.13 0.00 41.52 3.41
558 581 7.807433 TGTCAATTGTTTGCACATATTAGTGTC 59.193 33.333 5.13 0.00 41.52 3.67
566 590 8.671921 ACAAAATTTGTCAATTGTTTGCACATA 58.328 25.926 5.41 4.13 40.56 2.29
574 598 5.163571 GGCCCAACAAAATTTGTCAATTGTT 60.164 36.000 12.11 9.10 44.59 2.83
576 600 4.261530 GGGCCCAACAAAATTTGTCAATTG 60.262 41.667 19.95 6.56 44.59 2.32
578 602 3.117738 TGGGCCCAACAAAATTTGTCAAT 60.118 39.130 26.33 0.00 44.59 2.57
589 615 2.517402 GACGTGTGGGCCCAACAA 60.517 61.111 30.64 13.21 0.00 2.83
625 651 1.135527 CCCGCGTTAACTCCACTGATA 59.864 52.381 4.92 0.00 0.00 2.15
626 652 0.108329 CCCGCGTTAACTCCACTGAT 60.108 55.000 4.92 0.00 0.00 2.90
627 653 1.290955 CCCGCGTTAACTCCACTGA 59.709 57.895 4.92 0.00 0.00 3.41
649 675 1.663702 AGTTACGGCGCTGACACAC 60.664 57.895 25.98 12.97 0.00 3.82
665 691 9.750125 GAGGAAATAAAAGAACACAAAATCAGT 57.250 29.630 0.00 0.00 0.00 3.41
668 694 9.750125 ACAGAGGAAATAAAAGAACACAAAATC 57.250 29.630 0.00 0.00 0.00 2.17
669 695 9.750125 GACAGAGGAAATAAAAGAACACAAAAT 57.250 29.630 0.00 0.00 0.00 1.82
670 696 7.913297 CGACAGAGGAAATAAAAGAACACAAAA 59.087 33.333 0.00 0.00 0.00 2.44
684 807 1.208293 GAGCTTCCCGACAGAGGAAAT 59.792 52.381 0.00 0.00 42.75 2.17
704 827 4.981794 AGAAACAACGTGTGAAAGGAAAG 58.018 39.130 0.00 0.00 0.00 2.62
758 881 2.594592 ACAGGCGAACTTGGCACC 60.595 61.111 0.00 0.00 36.77 5.01
777 900 1.000060 CGTCAACGAAGGGGACACTAA 60.000 52.381 0.00 0.00 43.02 2.24
778 901 0.599558 CGTCAACGAAGGGGACACTA 59.400 55.000 0.00 0.00 43.02 2.74
869 999 4.709397 ACATATAGGAGGCAAGCTAGCTAG 59.291 45.833 19.70 16.84 34.17 3.42
879 1009 3.304829 TGCTGTGTACATATAGGAGGCA 58.695 45.455 0.00 0.00 0.00 4.75
966 1122 3.498777 GCAGCTAATCTTTCCCGGATAAC 59.501 47.826 0.73 0.00 0.00 1.89
1023 1182 0.117140 TCCTGAAGAGCCTCTTGGGA 59.883 55.000 12.63 15.38 36.73 4.37
1062 1221 1.066908 CTGCAGCTGCTACTAGACCTC 59.933 57.143 36.61 6.43 42.66 3.85
1093 1267 2.124983 ATCGCTGCCATTGTCGCT 60.125 55.556 0.00 0.00 0.00 4.93
1094 1268 2.023741 CATCGCTGCCATTGTCGC 59.976 61.111 0.00 0.00 0.00 5.19
1095 1269 2.023741 GCATCGCTGCCATTGTCG 59.976 61.111 0.00 0.00 42.88 4.35
1210 1384 3.769844 ACCTTGACTGTAATCACCTCGAT 59.230 43.478 0.00 0.00 35.12 3.59
1218 1392 2.084546 GTGGCCACCTTGACTGTAATC 58.915 52.381 26.31 0.00 0.00 1.75
1294 1468 3.579151 GGAAGATGGGGGTACTCTATGAC 59.421 52.174 0.00 0.00 0.00 3.06
1300 1474 3.614568 TCTAGGAAGATGGGGGTACTC 57.385 52.381 0.00 0.00 0.00 2.59
1302 1476 2.369203 GCTTCTAGGAAGATGGGGGTAC 59.631 54.545 10.94 0.00 0.00 3.34
1310 4550 4.555689 ACTGATGGAGCTTCTAGGAAGAT 58.444 43.478 10.94 4.69 0.00 2.40
1320 4560 6.848069 ACTCTATACTCTACTGATGGAGCTT 58.152 40.000 0.00 0.00 36.93 3.74
1337 4593 8.768957 ACGACGCTATGATTTAGTACTCTATA 57.231 34.615 0.00 0.00 0.00 1.31
1338 4594 7.670009 ACGACGCTATGATTTAGTACTCTAT 57.330 36.000 0.00 0.00 0.00 1.98
1494 4863 5.178623 TCTGAACCATCGTGTGTACATTTTC 59.821 40.000 0.00 0.00 0.00 2.29
1550 4927 5.047519 ACATTGCTTTGTACTACTCCGTACT 60.048 40.000 0.00 0.00 40.25 2.73
1552 4929 5.165676 CACATTGCTTTGTACTACTCCGTA 58.834 41.667 0.00 0.00 0.00 4.02
1553 4930 3.994392 CACATTGCTTTGTACTACTCCGT 59.006 43.478 0.00 0.00 0.00 4.69
1554 4931 3.994392 ACACATTGCTTTGTACTACTCCG 59.006 43.478 0.00 0.00 0.00 4.63
1640 8449 8.096414 AGCTCACCTGCACAAAATAATTTTTAT 58.904 29.630 0.00 0.00 32.92 1.40
1641 8450 7.384660 CAGCTCACCTGCACAAAATAATTTTTA 59.615 33.333 0.00 0.00 32.32 1.52
1642 8451 6.203338 CAGCTCACCTGCACAAAATAATTTTT 59.797 34.615 0.00 0.00 33.41 1.94
1650 8459 1.677576 CTTCAGCTCACCTGCACAAAA 59.322 47.619 0.00 0.00 41.50 2.44
1745 8554 0.613572 TCATGTGGAGGTGGTCGCTA 60.614 55.000 0.00 0.00 0.00 4.26
1764 8573 1.002134 CCTTGTCGCTCACCCCAAT 60.002 57.895 0.00 0.00 0.00 3.16
1775 8584 1.000955 AGTAGCACCTTGTCCTTGTCG 59.999 52.381 0.00 0.00 0.00 4.35
1793 8602 2.363147 GCAGGGTCCTCGAGGAGT 60.363 66.667 34.41 18.90 46.49 3.85
1903 8712 1.534336 TAACTGTTAGCGCGGTGGGA 61.534 55.000 23.02 3.70 0.00 4.37
2049 8885 1.643310 CCTTTGCCCTTCCATTCCAA 58.357 50.000 0.00 0.00 0.00 3.53
2212 9058 2.698274 AGTACCACGCATGACATCCATA 59.302 45.455 0.00 0.00 33.31 2.74
2213 9059 1.486310 AGTACCACGCATGACATCCAT 59.514 47.619 0.00 0.00 35.44 3.41
2230 9076 9.982651 GCACTCTCCAATCTAACATAATAAGTA 57.017 33.333 0.00 0.00 0.00 2.24
2231 9077 8.486210 TGCACTCTCCAATCTAACATAATAAGT 58.514 33.333 0.00 0.00 0.00 2.24
2358 9211 5.698741 ATGTGGTCTCATAACTTCATGGA 57.301 39.130 0.00 0.00 0.00 3.41
2416 9270 2.002586 CAACATCTAGCACCAACTCCG 58.997 52.381 0.00 0.00 0.00 4.63
2425 9279 3.317150 CGAACACTGTCAACATCTAGCA 58.683 45.455 0.00 0.00 0.00 3.49
2456 9310 2.983907 TACTGGACCGTTGTTGTTCA 57.016 45.000 0.00 0.00 0.00 3.18
2457 9311 4.062991 AGATTACTGGACCGTTGTTGTTC 58.937 43.478 0.00 0.00 0.00 3.18
2490 9347 8.262227 ACTTGAGTTTACGTCCCATTATCATAA 58.738 33.333 0.00 0.00 0.00 1.90
2499 9356 4.341806 TCAGTAACTTGAGTTTACGTCCCA 59.658 41.667 1.20 0.00 39.31 4.37
2583 9440 2.900122 ATTTCATTTCGGACACGCAG 57.100 45.000 0.00 0.00 40.69 5.18
2587 9444 9.817365 CTCATTGATATATTTCATTTCGGACAC 57.183 33.333 0.00 0.00 0.00 3.67
2600 9457 8.750298 CCCCTACTTCGTACTCATTGATATATT 58.250 37.037 0.00 0.00 0.00 1.28
2617 9474 1.188863 TGTTAGCGGACCCCTACTTC 58.811 55.000 0.00 0.00 0.00 3.01
2620 9477 1.474498 CCAATGTTAGCGGACCCCTAC 60.474 57.143 0.00 0.00 0.00 3.18
2630 9487 4.439305 TTGACTTCATGCCAATGTTAGC 57.561 40.909 0.00 0.00 35.15 3.09
2643 9500 6.638610 ACAACCAAATTTCACATTGACTTCA 58.361 32.000 7.06 0.00 0.00 3.02
2651 9508 6.983307 TCAAAATCGACAACCAAATTTCACAT 59.017 30.769 0.00 0.00 0.00 3.21
2654 9511 5.457148 CGTCAAAATCGACAACCAAATTTCA 59.543 36.000 0.00 0.00 35.54 2.69
2665 9522 4.196626 AGATAACCCGTCAAAATCGACA 57.803 40.909 0.00 0.00 35.54 4.35
2672 9529 8.801882 AATTCAATCTTAGATAACCCGTCAAA 57.198 30.769 0.00 0.00 0.00 2.69
2697 9554 9.321562 CGAAGCCCTAGTTTTAACATAGATTAA 57.678 33.333 0.00 0.00 0.00 1.40
2705 9562 3.775261 ACCGAAGCCCTAGTTTTAACA 57.225 42.857 0.00 0.00 0.00 2.41
2716 9573 0.250513 AGATGACTGAACCGAAGCCC 59.749 55.000 0.00 0.00 0.00 5.19
2717 9574 2.100605 AAGATGACTGAACCGAAGCC 57.899 50.000 0.00 0.00 0.00 4.35
2728 9585 3.006967 ACTTCACAACGGCTAAGATGACT 59.993 43.478 0.00 0.00 0.00 3.41
2755 9612 1.227823 CACACGCCAAGTCCAGGAA 60.228 57.895 0.00 0.00 0.00 3.36
2762 9619 5.529800 GGGTATAAATAATCACACGCCAAGT 59.470 40.000 0.00 0.00 0.00 3.16
2774 9631 9.377238 ACCGACTTAAGAGAGGGTATAAATAAT 57.623 33.333 10.09 0.00 32.77 1.28
2793 9650 1.109609 GGAAGGGATCGTACCGACTT 58.890 55.000 0.00 0.00 39.18 3.01
2802 9659 3.235200 AGACCAAGATAGGAAGGGATCG 58.765 50.000 0.00 0.00 0.00 3.69
2835 9692 3.771577 ACGAAGGAAGGATCAAGTTGT 57.228 42.857 2.11 0.00 0.00 3.32
2838 9695 2.637872 TCCAACGAAGGAAGGATCAAGT 59.362 45.455 0.00 0.00 33.93 3.16
2845 9702 1.089920 CATGCTCCAACGAAGGAAGG 58.910 55.000 0.00 0.00 37.20 3.46
2849 9706 0.036010 AGTCCATGCTCCAACGAAGG 60.036 55.000 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.