Multiple sequence alignment - TraesCS2B01G359600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G359600 chr2B 100.000 3593 0 0 1 3593 513251763 513255355 0.000000e+00 6636
1 TraesCS2B01G359600 chr2B 85.341 996 109 24 998 1964 512909351 512910338 0.000000e+00 996
2 TraesCS2B01G359600 chr2B 89.202 213 20 3 2387 2598 512910637 512910847 2.750000e-66 263
3 TraesCS2B01G359600 chr2D 92.667 2482 124 25 417 2884 434137932 434140369 0.000000e+00 3522
4 TraesCS2B01G359600 chr2D 84.677 992 115 21 1000 1964 433863295 433864276 0.000000e+00 955
5 TraesCS2B01G359600 chr2D 93.569 622 34 6 2974 3591 434331327 434331946 0.000000e+00 922
6 TraesCS2B01G359600 chr2D 87.410 556 48 12 432 983 434080516 434081053 1.420000e-173 619
7 TraesCS2B01G359600 chr2D 92.839 391 25 2 1 388 594485458 594485068 6.730000e-157 564
8 TraesCS2B01G359600 chr2D 87.404 389 48 1 2 389 132697673 132697285 2.550000e-121 446
9 TraesCS2B01G359600 chr2D 90.187 214 18 3 2387 2599 433864576 433864787 3.530000e-70 276
10 TraesCS2B01G359600 chr2D 91.071 112 9 1 2878 2989 434142556 434142666 2.230000e-32 150
11 TraesCS2B01G359600 chr2A 93.877 2319 90 24 403 2709 552840615 552838337 0.000000e+00 3448
12 TraesCS2B01G359600 chr2A 84.980 992 114 22 1000 1964 553280005 553279022 0.000000e+00 974
13 TraesCS2B01G359600 chr2A 88.175 389 41 2 1 388 729137859 729137475 3.270000e-125 459
14 TraesCS2B01G359600 chr2A 90.052 191 16 3 2409 2598 553278680 553278492 9.960000e-61 244
15 TraesCS2B01G359600 chr3A 95.641 390 17 0 1 390 240366738 240366349 8.470000e-176 627
16 TraesCS2B01G359600 chr4A 94.241 382 22 0 1 382 625089157 625089538 5.170000e-163 584
17 TraesCS2B01G359600 chr5D 92.746 386 22 2 1 386 341118 340739 1.460000e-153 553
18 TraesCS2B01G359600 chr5D 86.753 385 51 0 1 385 534009874 534010258 2.560000e-116 429
19 TraesCS2B01G359600 chr3D 87.565 386 46 2 1 385 498891912 498891528 2.550000e-121 446
20 TraesCS2B01G359600 chr4D 87.113 388 48 2 1 387 385713941 385713555 4.260000e-119 438


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G359600 chr2B 513251763 513255355 3592 False 6636.0 6636 100.0000 1 3593 1 chr2B.!!$F1 3592
1 TraesCS2B01G359600 chr2B 512909351 512910847 1496 False 629.5 996 87.2715 998 2598 2 chr2B.!!$F2 1600
2 TraesCS2B01G359600 chr2D 434137932 434142666 4734 False 1836.0 3522 91.8690 417 2989 2 chr2D.!!$F4 2572
3 TraesCS2B01G359600 chr2D 434331327 434331946 619 False 922.0 922 93.5690 2974 3591 1 chr2D.!!$F2 617
4 TraesCS2B01G359600 chr2D 434080516 434081053 537 False 619.0 619 87.4100 432 983 1 chr2D.!!$F1 551
5 TraesCS2B01G359600 chr2D 433863295 433864787 1492 False 615.5 955 87.4320 1000 2599 2 chr2D.!!$F3 1599
6 TraesCS2B01G359600 chr2A 552838337 552840615 2278 True 3448.0 3448 93.8770 403 2709 1 chr2A.!!$R1 2306
7 TraesCS2B01G359600 chr2A 553278492 553280005 1513 True 609.0 974 87.5160 1000 2598 2 chr2A.!!$R3 1598

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.033405 CTAGGTCCAGTTCCTCCGGA 60.033 60.0 2.93 2.93 36.60 5.14 F
275 276 0.033504 TGTCTTTCTGCTCCGGACAC 59.966 55.0 0.00 0.00 32.91 3.67 F
278 279 0.036010 CTTTCTGCTCCGGACACCAT 60.036 55.0 0.00 0.00 0.00 3.55 F
308 309 0.161658 GTCTGCGTTCGTGTCATGTG 59.838 55.0 0.00 0.00 0.00 3.21 F
2333 2408 0.109458 CTGACGCACGCCAACTAGTA 60.109 55.0 0.00 0.00 0.00 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2013 2051 0.733150 TCGCTAGATATGCCGATCGG 59.267 55.000 30.03 30.03 38.57 4.18 R
2135 2174 1.392710 GGTCGGTCGATGTCATCCCT 61.393 60.000 7.25 0.00 0.00 4.20 R
2268 2325 2.432628 GTCGCCCTTGTCGTCCAG 60.433 66.667 0.00 0.00 0.00 3.86 R
2356 2431 4.639310 GCCATCTGATATCACCATCAATCC 59.361 45.833 0.00 0.00 34.59 3.01 R
3332 5609 0.673644 ACACTGTGCCTGAATACCGC 60.674 55.000 7.90 0.00 0.00 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.473643 TTGGAGGCGTTGTCAAGG 57.526 55.556 0.77 0.77 0.00 3.61
18 19 1.896660 TTGGAGGCGTTGTCAAGGC 60.897 57.895 19.58 19.58 41.32 4.35
23 24 3.423154 GCGTTGTCAAGGCCCTCG 61.423 66.667 17.52 3.12 36.34 4.63
24 25 2.742372 CGTTGTCAAGGCCCTCGG 60.742 66.667 0.00 0.00 0.00 4.63
25 26 2.430367 GTTGTCAAGGCCCTCGGT 59.570 61.111 0.00 0.00 0.00 4.69
26 27 1.228154 GTTGTCAAGGCCCTCGGTT 60.228 57.895 0.00 0.00 0.00 4.44
27 28 1.228124 TTGTCAAGGCCCTCGGTTG 60.228 57.895 0.00 0.00 0.00 3.77
28 29 3.056328 GTCAAGGCCCTCGGTTGC 61.056 66.667 0.00 0.00 0.00 4.17
29 30 4.697756 TCAAGGCCCTCGGTTGCG 62.698 66.667 0.00 0.00 0.00 4.85
37 38 4.394712 CTCGGTTGCGCCCCTCTT 62.395 66.667 4.18 0.00 0.00 2.85
38 39 4.388499 TCGGTTGCGCCCCTCTTC 62.388 66.667 4.18 0.00 0.00 2.87
40 41 4.388499 GGTTGCGCCCCTCTTCGA 62.388 66.667 4.18 0.00 0.00 3.71
41 42 2.815647 GTTGCGCCCCTCTTCGAG 60.816 66.667 4.18 0.00 0.00 4.04
42 43 4.760047 TTGCGCCCCTCTTCGAGC 62.760 66.667 4.18 0.00 0.00 5.03
44 45 4.882396 GCGCCCCTCTTCGAGCTC 62.882 72.222 2.73 2.73 0.00 4.09
45 46 3.452786 CGCCCCTCTTCGAGCTCA 61.453 66.667 15.40 0.00 0.00 4.26
46 47 2.498726 GCCCCTCTTCGAGCTCAG 59.501 66.667 15.40 4.49 0.00 3.35
47 48 3.087666 GCCCCTCTTCGAGCTCAGG 62.088 68.421 15.40 12.51 0.00 3.86
48 49 2.430610 CCCCTCTTCGAGCTCAGGG 61.431 68.421 24.05 24.05 44.92 4.45
49 50 2.430610 CCCTCTTCGAGCTCAGGGG 61.431 68.421 23.52 18.30 41.96 4.79
50 51 1.380515 CCTCTTCGAGCTCAGGGGA 60.381 63.158 13.68 0.00 31.27 4.81
51 52 0.972983 CCTCTTCGAGCTCAGGGGAA 60.973 60.000 13.68 7.73 31.27 3.97
52 53 0.898320 CTCTTCGAGCTCAGGGGAAA 59.102 55.000 15.40 0.00 0.00 3.13
53 54 0.608640 TCTTCGAGCTCAGGGGAAAC 59.391 55.000 15.40 0.00 0.00 2.78
67 68 2.783609 GGAAACCCTAGGTCCAGTTC 57.216 55.000 8.29 3.63 33.12 3.01
68 69 1.281287 GGAAACCCTAGGTCCAGTTCC 59.719 57.143 8.29 8.89 33.51 3.62
69 70 2.267192 GAAACCCTAGGTCCAGTTCCT 58.733 52.381 8.29 0.00 33.12 3.36
70 71 1.954035 AACCCTAGGTCCAGTTCCTC 58.046 55.000 8.29 0.00 33.12 3.71
71 72 0.042881 ACCCTAGGTCCAGTTCCTCC 59.957 60.000 8.29 0.00 36.60 4.30
72 73 1.043673 CCCTAGGTCCAGTTCCTCCG 61.044 65.000 8.29 0.00 36.60 4.63
73 74 1.043673 CCTAGGTCCAGTTCCTCCGG 61.044 65.000 0.00 0.00 36.60 5.14
74 75 0.033405 CTAGGTCCAGTTCCTCCGGA 60.033 60.000 2.93 2.93 36.60 5.14
76 77 2.979649 GTCCAGTTCCTCCGGACC 59.020 66.667 0.00 0.00 42.87 4.46
77 78 2.678934 TCCAGTTCCTCCGGACCG 60.679 66.667 6.99 6.99 0.00 4.79
93 94 4.129737 CGGATGGCGACGGTGTCT 62.130 66.667 0.00 0.00 0.00 3.41
94 95 2.202756 GGATGGCGACGGTGTCTC 60.203 66.667 0.00 0.00 0.00 3.36
95 96 2.579787 GATGGCGACGGTGTCTCG 60.580 66.667 0.00 0.00 0.00 4.04
96 97 4.129737 ATGGCGACGGTGTCTCGG 62.130 66.667 0.00 0.00 0.00 4.63
103 104 3.792047 CGGTGTCTCGGCGTCGTA 61.792 66.667 10.18 0.00 37.69 3.43
104 105 2.796651 GGTGTCTCGGCGTCGTAT 59.203 61.111 10.18 0.00 37.69 3.06
105 106 1.138247 GGTGTCTCGGCGTCGTATT 59.862 57.895 10.18 0.00 37.69 1.89
106 107 0.864797 GGTGTCTCGGCGTCGTATTC 60.865 60.000 10.18 0.00 37.69 1.75
107 108 0.864797 GTGTCTCGGCGTCGTATTCC 60.865 60.000 10.18 0.00 37.69 3.01
108 109 1.028330 TGTCTCGGCGTCGTATTCCT 61.028 55.000 10.18 0.00 37.69 3.36
109 110 0.100146 GTCTCGGCGTCGTATTCCTT 59.900 55.000 10.18 0.00 37.69 3.36
110 111 0.379669 TCTCGGCGTCGTATTCCTTC 59.620 55.000 10.18 0.00 37.69 3.46
111 112 0.381089 CTCGGCGTCGTATTCCTTCT 59.619 55.000 10.18 0.00 37.69 2.85
112 113 0.813184 TCGGCGTCGTATTCCTTCTT 59.187 50.000 10.18 0.00 37.69 2.52
113 114 0.921347 CGGCGTCGTATTCCTTCTTG 59.079 55.000 0.00 0.00 0.00 3.02
114 115 1.468565 CGGCGTCGTATTCCTTCTTGA 60.469 52.381 0.00 0.00 0.00 3.02
115 116 2.613691 GGCGTCGTATTCCTTCTTGAA 58.386 47.619 0.00 0.00 0.00 2.69
116 117 3.195661 GGCGTCGTATTCCTTCTTGAAT 58.804 45.455 0.00 0.00 38.47 2.57
117 118 3.245519 GGCGTCGTATTCCTTCTTGAATC 59.754 47.826 0.00 0.00 36.41 2.52
118 119 3.245519 GCGTCGTATTCCTTCTTGAATCC 59.754 47.826 0.00 0.00 36.41 3.01
119 120 3.486108 CGTCGTATTCCTTCTTGAATCCG 59.514 47.826 0.00 0.00 35.97 4.18
120 121 3.245519 GTCGTATTCCTTCTTGAATCCGC 59.754 47.826 0.00 0.00 35.03 5.54
121 122 2.544267 CGTATTCCTTCTTGAATCCGCC 59.456 50.000 0.00 0.00 36.41 6.13
122 123 2.806945 ATTCCTTCTTGAATCCGCCA 57.193 45.000 0.00 0.00 28.88 5.69
123 124 2.806945 TTCCTTCTTGAATCCGCCAT 57.193 45.000 0.00 0.00 0.00 4.40
124 125 2.332063 TCCTTCTTGAATCCGCCATC 57.668 50.000 0.00 0.00 0.00 3.51
125 126 1.839994 TCCTTCTTGAATCCGCCATCT 59.160 47.619 0.00 0.00 0.00 2.90
126 127 2.239654 TCCTTCTTGAATCCGCCATCTT 59.760 45.455 0.00 0.00 0.00 2.40
127 128 2.357009 CCTTCTTGAATCCGCCATCTTG 59.643 50.000 0.00 0.00 0.00 3.02
128 129 1.382522 TCTTGAATCCGCCATCTTGC 58.617 50.000 0.00 0.00 0.00 4.01
129 130 1.065199 TCTTGAATCCGCCATCTTGCT 60.065 47.619 0.00 0.00 0.00 3.91
130 131 1.747355 CTTGAATCCGCCATCTTGCTT 59.253 47.619 0.00 0.00 0.00 3.91
131 132 1.097232 TGAATCCGCCATCTTGCTTG 58.903 50.000 0.00 0.00 0.00 4.01
132 133 0.383231 GAATCCGCCATCTTGCTTGG 59.617 55.000 0.00 0.00 37.31 3.61
133 134 0.323725 AATCCGCCATCTTGCTTGGT 60.324 50.000 0.00 0.00 36.57 3.67
134 135 0.749454 ATCCGCCATCTTGCTTGGTC 60.749 55.000 0.00 0.00 36.57 4.02
135 136 2.753966 CCGCCATCTTGCTTGGTCG 61.754 63.158 0.00 0.00 36.57 4.79
136 137 2.486966 GCCATCTTGCTTGGTCGC 59.513 61.111 0.00 0.00 36.57 5.19
137 138 2.787249 CCATCTTGCTTGGTCGCG 59.213 61.111 0.00 0.00 0.00 5.87
138 139 2.753966 CCATCTTGCTTGGTCGCGG 61.754 63.158 6.13 0.00 0.00 6.46
139 140 2.034879 CATCTTGCTTGGTCGCGGT 61.035 57.895 6.13 0.00 0.00 5.68
140 141 2.034879 ATCTTGCTTGGTCGCGGTG 61.035 57.895 6.13 0.00 0.00 4.94
141 142 2.731691 ATCTTGCTTGGTCGCGGTGT 62.732 55.000 6.13 0.00 0.00 4.16
142 143 2.954753 CTTGCTTGGTCGCGGTGTC 61.955 63.158 6.13 0.00 0.00 3.67
143 144 4.980805 TGCTTGGTCGCGGTGTCC 62.981 66.667 6.13 4.91 0.00 4.02
154 155 4.717313 GGTGTCCCCGGTCTTGGC 62.717 72.222 0.00 0.00 0.00 4.52
155 156 3.637273 GTGTCCCCGGTCTTGGCT 61.637 66.667 0.00 0.00 0.00 4.75
156 157 3.319198 TGTCCCCGGTCTTGGCTC 61.319 66.667 0.00 0.00 0.00 4.70
157 158 4.097361 GTCCCCGGTCTTGGCTCC 62.097 72.222 0.00 0.00 0.00 4.70
158 159 4.649705 TCCCCGGTCTTGGCTCCA 62.650 66.667 0.00 0.00 0.00 3.86
159 160 4.101448 CCCCGGTCTTGGCTCCAG 62.101 72.222 0.00 0.00 0.00 3.86
160 161 4.785453 CCCGGTCTTGGCTCCAGC 62.785 72.222 0.00 0.00 41.14 4.85
162 163 4.069232 CGGTCTTGGCTCCAGCGA 62.069 66.667 0.00 0.00 43.26 4.93
163 164 2.586792 GGTCTTGGCTCCAGCGAT 59.413 61.111 0.00 0.00 43.26 4.58
164 165 1.817099 GGTCTTGGCTCCAGCGATG 60.817 63.158 0.00 0.00 43.26 3.84
165 166 1.078848 GTCTTGGCTCCAGCGATGT 60.079 57.895 0.00 0.00 43.26 3.06
166 167 0.674895 GTCTTGGCTCCAGCGATGTT 60.675 55.000 0.00 0.00 43.26 2.71
167 168 0.674581 TCTTGGCTCCAGCGATGTTG 60.675 55.000 0.00 0.00 43.26 3.33
168 169 1.651240 CTTGGCTCCAGCGATGTTGG 61.651 60.000 0.00 0.00 43.26 3.77
169 170 2.045926 GGCTCCAGCGATGTTGGT 60.046 61.111 0.00 0.00 43.26 3.67
170 171 2.401766 GGCTCCAGCGATGTTGGTG 61.402 63.158 0.00 0.00 43.26 4.17
171 172 1.375908 GCTCCAGCGATGTTGGTGA 60.376 57.895 0.00 0.00 39.68 4.02
172 173 1.639298 GCTCCAGCGATGTTGGTGAC 61.639 60.000 0.00 0.00 39.68 3.67
173 174 1.003839 TCCAGCGATGTTGGTGACC 60.004 57.895 0.00 0.00 39.68 4.02
174 175 1.003355 CCAGCGATGTTGGTGACCT 60.003 57.895 2.11 0.00 39.68 3.85
175 176 0.606401 CCAGCGATGTTGGTGACCTT 60.606 55.000 2.11 0.00 39.68 3.50
176 177 0.518636 CAGCGATGTTGGTGACCTTG 59.481 55.000 2.11 0.00 39.68 3.61
177 178 0.108585 AGCGATGTTGGTGACCTTGT 59.891 50.000 2.11 0.00 0.00 3.16
178 179 0.951558 GCGATGTTGGTGACCTTGTT 59.048 50.000 2.11 0.00 0.00 2.83
179 180 1.334960 GCGATGTTGGTGACCTTGTTG 60.335 52.381 2.11 0.00 0.00 3.33
180 181 2.217750 CGATGTTGGTGACCTTGTTGA 58.782 47.619 2.11 0.00 0.00 3.18
181 182 2.813754 CGATGTTGGTGACCTTGTTGAT 59.186 45.455 2.11 0.00 0.00 2.57
182 183 3.253188 CGATGTTGGTGACCTTGTTGATT 59.747 43.478 2.11 0.00 0.00 2.57
183 184 4.613622 CGATGTTGGTGACCTTGTTGATTC 60.614 45.833 2.11 0.00 0.00 2.52
184 185 2.616376 TGTTGGTGACCTTGTTGATTCG 59.384 45.455 2.11 0.00 0.00 3.34
185 186 2.875933 GTTGGTGACCTTGTTGATTCGA 59.124 45.455 2.11 0.00 0.00 3.71
186 187 2.766313 TGGTGACCTTGTTGATTCGAG 58.234 47.619 2.11 0.00 0.00 4.04
187 188 2.104111 TGGTGACCTTGTTGATTCGAGT 59.896 45.455 2.11 0.00 0.00 4.18
188 189 3.139077 GGTGACCTTGTTGATTCGAGTT 58.861 45.455 0.00 0.00 0.00 3.01
189 190 3.564225 GGTGACCTTGTTGATTCGAGTTT 59.436 43.478 0.00 0.00 0.00 2.66
190 191 4.527564 GTGACCTTGTTGATTCGAGTTTG 58.472 43.478 0.00 0.00 0.00 2.93
191 192 3.003275 TGACCTTGTTGATTCGAGTTTGC 59.997 43.478 0.00 0.00 0.00 3.68
192 193 2.293399 ACCTTGTTGATTCGAGTTTGCC 59.707 45.455 0.00 0.00 0.00 4.52
193 194 2.574322 CTTGTTGATTCGAGTTTGCCG 58.426 47.619 0.00 0.00 0.00 5.69
194 195 0.237235 TGTTGATTCGAGTTTGCCGC 59.763 50.000 0.00 0.00 0.00 6.53
195 196 0.517316 GTTGATTCGAGTTTGCCGCT 59.483 50.000 0.00 0.00 0.00 5.52
196 197 0.796312 TTGATTCGAGTTTGCCGCTC 59.204 50.000 0.00 0.00 0.00 5.03
197 198 0.037326 TGATTCGAGTTTGCCGCTCT 60.037 50.000 0.00 0.00 0.00 4.09
198 199 1.079503 GATTCGAGTTTGCCGCTCTT 58.920 50.000 0.00 0.00 0.00 2.85
199 200 1.464997 GATTCGAGTTTGCCGCTCTTT 59.535 47.619 0.00 0.00 0.00 2.52
200 201 0.586319 TTCGAGTTTGCCGCTCTTTG 59.414 50.000 0.00 0.00 0.00 2.77
201 202 0.531974 TCGAGTTTGCCGCTCTTTGT 60.532 50.000 0.00 0.00 0.00 2.83
202 203 0.307760 CGAGTTTGCCGCTCTTTGTT 59.692 50.000 0.00 0.00 0.00 2.83
203 204 1.268539 CGAGTTTGCCGCTCTTTGTTT 60.269 47.619 0.00 0.00 0.00 2.83
204 205 2.119457 GAGTTTGCCGCTCTTTGTTTG 58.881 47.619 0.00 0.00 0.00 2.93
205 206 1.202405 AGTTTGCCGCTCTTTGTTTGG 60.202 47.619 0.00 0.00 0.00 3.28
206 207 0.103937 TTTGCCGCTCTTTGTTTGGG 59.896 50.000 0.00 0.00 0.00 4.12
207 208 1.040339 TTGCCGCTCTTTGTTTGGGT 61.040 50.000 0.00 0.00 0.00 4.51
208 209 1.040339 TGCCGCTCTTTGTTTGGGTT 61.040 50.000 0.00 0.00 0.00 4.11
209 210 0.104120 GCCGCTCTTTGTTTGGGTTT 59.896 50.000 0.00 0.00 0.00 3.27
210 211 1.851658 CCGCTCTTTGTTTGGGTTTG 58.148 50.000 0.00 0.00 0.00 2.93
211 212 1.537990 CCGCTCTTTGTTTGGGTTTGG 60.538 52.381 0.00 0.00 0.00 3.28
212 213 1.136110 CGCTCTTTGTTTGGGTTTGGT 59.864 47.619 0.00 0.00 0.00 3.67
213 214 2.359531 CGCTCTTTGTTTGGGTTTGGTA 59.640 45.455 0.00 0.00 0.00 3.25
214 215 3.550030 CGCTCTTTGTTTGGGTTTGGTAG 60.550 47.826 0.00 0.00 0.00 3.18
215 216 3.243737 GCTCTTTGTTTGGGTTTGGTAGG 60.244 47.826 0.00 0.00 0.00 3.18
216 217 3.958147 CTCTTTGTTTGGGTTTGGTAGGT 59.042 43.478 0.00 0.00 0.00 3.08
217 218 4.354662 TCTTTGTTTGGGTTTGGTAGGTT 58.645 39.130 0.00 0.00 0.00 3.50
218 219 4.778427 TCTTTGTTTGGGTTTGGTAGGTTT 59.222 37.500 0.00 0.00 0.00 3.27
219 220 5.956563 TCTTTGTTTGGGTTTGGTAGGTTTA 59.043 36.000 0.00 0.00 0.00 2.01
220 221 5.855740 TTGTTTGGGTTTGGTAGGTTTAG 57.144 39.130 0.00 0.00 0.00 1.85
221 222 3.637694 TGTTTGGGTTTGGTAGGTTTAGC 59.362 43.478 0.00 0.00 0.00 3.09
222 223 3.887916 TTGGGTTTGGTAGGTTTAGCT 57.112 42.857 0.00 0.00 0.00 3.32
223 224 3.149005 TGGGTTTGGTAGGTTTAGCTG 57.851 47.619 0.00 0.00 0.00 4.24
224 225 2.444010 TGGGTTTGGTAGGTTTAGCTGT 59.556 45.455 0.00 0.00 0.00 4.40
225 226 2.817844 GGGTTTGGTAGGTTTAGCTGTG 59.182 50.000 0.00 0.00 0.00 3.66
226 227 3.483421 GGTTTGGTAGGTTTAGCTGTGT 58.517 45.455 0.00 0.00 0.00 3.72
227 228 3.887110 GGTTTGGTAGGTTTAGCTGTGTT 59.113 43.478 0.00 0.00 0.00 3.32
228 229 4.261447 GGTTTGGTAGGTTTAGCTGTGTTG 60.261 45.833 0.00 0.00 0.00 3.33
229 230 3.849563 TGGTAGGTTTAGCTGTGTTGT 57.150 42.857 0.00 0.00 0.00 3.32
230 231 4.959560 TGGTAGGTTTAGCTGTGTTGTA 57.040 40.909 0.00 0.00 0.00 2.41
231 232 5.492855 TGGTAGGTTTAGCTGTGTTGTAT 57.507 39.130 0.00 0.00 0.00 2.29
232 233 5.484715 TGGTAGGTTTAGCTGTGTTGTATC 58.515 41.667 0.00 0.00 0.00 2.24
233 234 5.247564 TGGTAGGTTTAGCTGTGTTGTATCT 59.752 40.000 0.00 0.00 0.00 1.98
234 235 6.171213 GGTAGGTTTAGCTGTGTTGTATCTT 58.829 40.000 0.00 0.00 0.00 2.40
235 236 6.313164 GGTAGGTTTAGCTGTGTTGTATCTTC 59.687 42.308 0.00 0.00 0.00 2.87
236 237 6.115448 AGGTTTAGCTGTGTTGTATCTTCT 57.885 37.500 0.00 0.00 0.00 2.85
237 238 6.166982 AGGTTTAGCTGTGTTGTATCTTCTC 58.833 40.000 0.00 0.00 0.00 2.87
238 239 6.014156 AGGTTTAGCTGTGTTGTATCTTCTCT 60.014 38.462 0.00 0.00 0.00 3.10
239 240 6.651225 GGTTTAGCTGTGTTGTATCTTCTCTT 59.349 38.462 0.00 0.00 0.00 2.85
240 241 7.148557 GGTTTAGCTGTGTTGTATCTTCTCTTC 60.149 40.741 0.00 0.00 0.00 2.87
241 242 4.489810 AGCTGTGTTGTATCTTCTCTTCG 58.510 43.478 0.00 0.00 0.00 3.79
242 243 3.614616 GCTGTGTTGTATCTTCTCTTCGG 59.385 47.826 0.00 0.00 0.00 4.30
243 244 4.177026 CTGTGTTGTATCTTCTCTTCGGG 58.823 47.826 0.00 0.00 0.00 5.14
244 245 2.930682 GTGTTGTATCTTCTCTTCGGGC 59.069 50.000 0.00 0.00 0.00 6.13
245 246 2.832129 TGTTGTATCTTCTCTTCGGGCT 59.168 45.455 0.00 0.00 0.00 5.19
246 247 3.190874 GTTGTATCTTCTCTTCGGGCTG 58.809 50.000 0.00 0.00 0.00 4.85
247 248 2.735151 TGTATCTTCTCTTCGGGCTGA 58.265 47.619 0.00 0.00 0.00 4.26
248 249 2.690497 TGTATCTTCTCTTCGGGCTGAG 59.310 50.000 0.00 0.00 0.00 3.35
249 250 0.463620 ATCTTCTCTTCGGGCTGAGC 59.536 55.000 0.00 0.00 0.00 4.26
250 251 0.900182 TCTTCTCTTCGGGCTGAGCA 60.900 55.000 6.82 0.00 0.00 4.26
251 252 0.177604 CTTCTCTTCGGGCTGAGCAT 59.822 55.000 6.82 0.00 0.00 3.79
252 253 0.176680 TTCTCTTCGGGCTGAGCATC 59.823 55.000 6.82 0.00 0.00 3.91
253 254 1.227497 CTCTTCGGGCTGAGCATCC 60.227 63.158 6.82 0.00 0.00 3.51
254 255 2.203126 CTTCGGGCTGAGCATCCC 60.203 66.667 6.82 0.00 39.17 3.85
255 256 2.688666 TTCGGGCTGAGCATCCCT 60.689 61.111 6.82 0.00 40.41 4.20
256 257 2.262774 CTTCGGGCTGAGCATCCCTT 62.263 60.000 6.82 0.00 40.41 3.95
257 258 2.515523 CGGGCTGAGCATCCCTTG 60.516 66.667 6.82 0.00 40.41 3.61
258 259 2.679716 GGGCTGAGCATCCCTTGT 59.320 61.111 6.82 0.00 39.46 3.16
259 260 1.452833 GGGCTGAGCATCCCTTGTC 60.453 63.158 6.82 0.00 39.46 3.18
260 261 1.606531 GGCTGAGCATCCCTTGTCT 59.393 57.895 6.82 0.00 0.00 3.41
261 262 0.034670 GGCTGAGCATCCCTTGTCTT 60.035 55.000 6.82 0.00 0.00 3.01
262 263 1.615384 GGCTGAGCATCCCTTGTCTTT 60.615 52.381 6.82 0.00 0.00 2.52
263 264 1.742268 GCTGAGCATCCCTTGTCTTTC 59.258 52.381 0.00 0.00 0.00 2.62
264 265 2.617532 GCTGAGCATCCCTTGTCTTTCT 60.618 50.000 0.00 0.00 0.00 2.52
265 266 3.008330 CTGAGCATCCCTTGTCTTTCTG 58.992 50.000 0.00 0.00 0.00 3.02
266 267 1.742268 GAGCATCCCTTGTCTTTCTGC 59.258 52.381 0.00 0.00 0.00 4.26
267 268 1.353694 AGCATCCCTTGTCTTTCTGCT 59.646 47.619 0.00 0.00 33.89 4.24
268 269 1.742268 GCATCCCTTGTCTTTCTGCTC 59.258 52.381 0.00 0.00 0.00 4.26
269 270 2.363683 CATCCCTTGTCTTTCTGCTCC 58.636 52.381 0.00 0.00 0.00 4.70
270 271 0.321671 TCCCTTGTCTTTCTGCTCCG 59.678 55.000 0.00 0.00 0.00 4.63
271 272 0.674895 CCCTTGTCTTTCTGCTCCGG 60.675 60.000 0.00 0.00 0.00 5.14
272 273 0.321671 CCTTGTCTTTCTGCTCCGGA 59.678 55.000 2.93 2.93 0.00 5.14
273 274 1.433534 CTTGTCTTTCTGCTCCGGAC 58.566 55.000 0.00 0.00 0.00 4.79
274 275 0.756294 TTGTCTTTCTGCTCCGGACA 59.244 50.000 0.00 2.99 35.51 4.02
275 276 0.033504 TGTCTTTCTGCTCCGGACAC 59.966 55.000 0.00 0.00 32.91 3.67
276 277 0.670854 GTCTTTCTGCTCCGGACACC 60.671 60.000 0.00 0.00 0.00 4.16
277 278 1.118965 TCTTTCTGCTCCGGACACCA 61.119 55.000 0.00 0.00 0.00 4.17
278 279 0.036010 CTTTCTGCTCCGGACACCAT 60.036 55.000 0.00 0.00 0.00 3.55
279 280 0.321564 TTTCTGCTCCGGACACCATG 60.322 55.000 0.00 0.00 0.00 3.66
280 281 1.480212 TTCTGCTCCGGACACCATGT 61.480 55.000 0.00 0.00 0.00 3.21
281 282 1.003355 CTGCTCCGGACACCATGTT 60.003 57.895 0.00 0.00 0.00 2.71
282 283 1.003839 TGCTCCGGACACCATGTTC 60.004 57.895 0.00 0.00 0.00 3.18
283 284 1.003839 GCTCCGGACACCATGTTCA 60.004 57.895 0.00 0.00 0.00 3.18
284 285 0.392998 GCTCCGGACACCATGTTCAT 60.393 55.000 0.00 0.00 0.00 2.57
285 286 1.372582 CTCCGGACACCATGTTCATG 58.627 55.000 0.00 5.88 0.00 3.07
286 287 0.676466 TCCGGACACCATGTTCATGC 60.676 55.000 0.00 0.00 0.00 4.06
287 288 0.959867 CCGGACACCATGTTCATGCA 60.960 55.000 0.00 0.00 0.00 3.96
288 289 1.097232 CGGACACCATGTTCATGCAT 58.903 50.000 7.21 0.00 0.00 3.96
289 290 1.202211 CGGACACCATGTTCATGCATG 60.202 52.381 21.07 21.07 44.18 4.06
290 291 1.820519 GGACACCATGTTCATGCATGT 59.179 47.619 25.43 15.62 43.33 3.21
291 292 2.159338 GGACACCATGTTCATGCATGTC 60.159 50.000 25.43 24.24 43.33 3.06
292 293 2.751259 GACACCATGTTCATGCATGTCT 59.249 45.455 25.43 6.88 43.33 3.41
293 294 2.490509 ACACCATGTTCATGCATGTCTG 59.509 45.455 25.43 16.97 43.33 3.51
302 303 3.244105 GCATGTCTGCGTTCGTGT 58.756 55.556 0.00 0.00 38.92 4.49
303 304 1.130613 GCATGTCTGCGTTCGTGTC 59.869 57.895 0.00 0.00 38.92 3.67
304 305 1.556591 GCATGTCTGCGTTCGTGTCA 61.557 55.000 0.00 0.00 38.92 3.58
305 306 1.070821 CATGTCTGCGTTCGTGTCAT 58.929 50.000 0.00 0.00 0.00 3.06
306 307 1.070821 ATGTCTGCGTTCGTGTCATG 58.929 50.000 0.00 0.00 0.00 3.07
307 308 0.249280 TGTCTGCGTTCGTGTCATGT 60.249 50.000 0.00 0.00 0.00 3.21
308 309 0.161658 GTCTGCGTTCGTGTCATGTG 59.838 55.000 0.00 0.00 0.00 3.21
309 310 0.249280 TCTGCGTTCGTGTCATGTGT 60.249 50.000 0.00 0.00 0.00 3.72
310 311 0.581529 CTGCGTTCGTGTCATGTGTT 59.418 50.000 0.00 0.00 0.00 3.32
311 312 0.303191 TGCGTTCGTGTCATGTGTTG 59.697 50.000 0.00 0.00 0.00 3.33
312 313 0.303493 GCGTTCGTGTCATGTGTTGT 59.697 50.000 0.00 0.00 0.00 3.32
313 314 1.523515 GCGTTCGTGTCATGTGTTGTA 59.476 47.619 0.00 0.00 0.00 2.41
314 315 2.658224 GCGTTCGTGTCATGTGTTGTAC 60.658 50.000 0.00 0.00 0.00 2.90
315 316 2.097104 CGTTCGTGTCATGTGTTGTACC 60.097 50.000 0.00 0.00 0.00 3.34
316 317 2.157834 TCGTGTCATGTGTTGTACCC 57.842 50.000 0.00 0.00 0.00 3.69
317 318 1.689813 TCGTGTCATGTGTTGTACCCT 59.310 47.619 0.00 0.00 0.00 4.34
318 319 2.103432 TCGTGTCATGTGTTGTACCCTT 59.897 45.455 0.00 0.00 0.00 3.95
319 320 3.321396 TCGTGTCATGTGTTGTACCCTTA 59.679 43.478 0.00 0.00 0.00 2.69
320 321 4.020928 TCGTGTCATGTGTTGTACCCTTAT 60.021 41.667 0.00 0.00 0.00 1.73
321 322 5.185442 TCGTGTCATGTGTTGTACCCTTATA 59.815 40.000 0.00 0.00 0.00 0.98
322 323 6.046593 CGTGTCATGTGTTGTACCCTTATAT 58.953 40.000 0.00 0.00 0.00 0.86
323 324 6.019075 CGTGTCATGTGTTGTACCCTTATATG 60.019 42.308 0.00 0.00 0.00 1.78
324 325 6.821665 GTGTCATGTGTTGTACCCTTATATGT 59.178 38.462 0.00 0.00 0.00 2.29
325 326 7.982919 GTGTCATGTGTTGTACCCTTATATGTA 59.017 37.037 0.00 0.00 0.00 2.29
326 327 7.982919 TGTCATGTGTTGTACCCTTATATGTAC 59.017 37.037 0.00 0.00 38.22 2.90
327 328 8.202137 GTCATGTGTTGTACCCTTATATGTACT 58.798 37.037 0.00 0.00 38.48 2.73
328 329 8.764558 TCATGTGTTGTACCCTTATATGTACTT 58.235 33.333 0.00 0.00 38.48 2.24
335 336 9.991906 TTGTACCCTTATATGTACTTATTCTGC 57.008 33.333 6.59 0.00 38.48 4.26
336 337 9.375974 TGTACCCTTATATGTACTTATTCTGCT 57.624 33.333 6.59 0.00 38.48 4.24
337 338 9.857957 GTACCCTTATATGTACTTATTCTGCTC 57.142 37.037 6.59 0.00 35.55 4.26
338 339 7.908453 ACCCTTATATGTACTTATTCTGCTCC 58.092 38.462 6.59 0.00 0.00 4.70
339 340 7.735321 ACCCTTATATGTACTTATTCTGCTCCT 59.265 37.037 6.59 0.00 0.00 3.69
340 341 8.598041 CCCTTATATGTACTTATTCTGCTCCTT 58.402 37.037 6.59 0.00 0.00 3.36
341 342 9.646427 CCTTATATGTACTTATTCTGCTCCTTC 57.354 37.037 6.59 0.00 0.00 3.46
346 347 7.898014 TGTACTTATTCTGCTCCTTCTATCA 57.102 36.000 0.00 0.00 0.00 2.15
347 348 8.306313 TGTACTTATTCTGCTCCTTCTATCAA 57.694 34.615 0.00 0.00 0.00 2.57
348 349 8.928448 TGTACTTATTCTGCTCCTTCTATCAAT 58.072 33.333 0.00 0.00 0.00 2.57
351 352 8.928448 ACTTATTCTGCTCCTTCTATCAATACA 58.072 33.333 0.00 0.00 0.00 2.29
352 353 9.770097 CTTATTCTGCTCCTTCTATCAATACAA 57.230 33.333 0.00 0.00 0.00 2.41
354 355 8.618702 ATTCTGCTCCTTCTATCAATACAATG 57.381 34.615 0.00 0.00 0.00 2.82
355 356 7.365497 TCTGCTCCTTCTATCAATACAATGA 57.635 36.000 0.00 0.00 0.00 2.57
356 357 7.971201 TCTGCTCCTTCTATCAATACAATGAT 58.029 34.615 0.00 0.00 42.52 2.45
357 358 9.093458 TCTGCTCCTTCTATCAATACAATGATA 57.907 33.333 0.00 0.00 40.44 2.15
358 359 9.149225 CTGCTCCTTCTATCAATACAATGATAC 57.851 37.037 0.00 0.00 40.44 2.24
359 360 7.814587 TGCTCCTTCTATCAATACAATGATACG 59.185 37.037 0.00 0.00 40.44 3.06
360 361 7.201478 GCTCCTTCTATCAATACAATGATACGC 60.201 40.741 0.00 0.00 40.44 4.42
361 362 7.666623 TCCTTCTATCAATACAATGATACGCA 58.333 34.615 0.00 0.00 40.44 5.24
362 363 8.147704 TCCTTCTATCAATACAATGATACGCAA 58.852 33.333 0.00 0.00 40.44 4.85
363 364 8.438513 CCTTCTATCAATACAATGATACGCAAG 58.561 37.037 0.00 0.00 40.44 4.01
364 365 7.351414 TCTATCAATACAATGATACGCAAGC 57.649 36.000 0.00 0.00 40.44 4.01
365 366 7.154656 TCTATCAATACAATGATACGCAAGCT 58.845 34.615 0.00 0.00 40.44 3.74
366 367 6.624352 ATCAATACAATGATACGCAAGCTT 57.376 33.333 0.00 0.00 38.25 3.74
367 368 6.435430 TCAATACAATGATACGCAAGCTTT 57.565 33.333 0.00 0.00 45.62 3.51
368 369 6.257423 TCAATACAATGATACGCAAGCTTTG 58.743 36.000 0.00 0.00 45.62 2.77
369 370 8.413646 ATCAATACAATGATACGCAAGCTTTGC 61.414 37.037 0.00 3.35 44.24 3.68
430 431 7.500559 AGACAAGTAATATGGATCAAAGGAAGC 59.499 37.037 0.00 0.00 0.00 3.86
808 813 3.118454 GTGCGGCGCGGCATATAT 61.118 61.111 39.25 0.00 45.99 0.86
809 814 2.358125 TGCGGCGCGGCATATATT 60.358 55.556 35.00 0.00 38.17 1.28
810 815 1.079750 TGCGGCGCGGCATATATTA 60.080 52.632 35.00 13.81 38.17 0.98
811 816 0.461163 TGCGGCGCGGCATATATTAT 60.461 50.000 35.00 0.00 38.17 1.28
812 817 0.232303 GCGGCGCGGCATATATTATC 59.768 55.000 31.91 5.42 0.00 1.75
813 818 1.566404 CGGCGCGGCATATATTATCA 58.434 50.000 32.60 0.00 0.00 2.15
814 819 1.930503 CGGCGCGGCATATATTATCAA 59.069 47.619 32.60 0.00 0.00 2.57
815 820 2.543848 CGGCGCGGCATATATTATCAAT 59.456 45.455 32.60 0.00 0.00 2.57
941 947 4.335594 GTCTATTGGCTAGCGAAACCAAAT 59.664 41.667 16.45 1.35 46.01 2.32
952 958 3.365969 GCGAAACCAAATAGTTCACCAGG 60.366 47.826 0.00 0.00 0.00 4.45
1155 1162 2.746362 GTCTGGATCTTCTTGCCTTGTG 59.254 50.000 0.00 0.00 0.00 3.33
1156 1163 2.373169 TCTGGATCTTCTTGCCTTGTGT 59.627 45.455 0.00 0.00 0.00 3.72
1157 1164 3.152341 CTGGATCTTCTTGCCTTGTGTT 58.848 45.455 0.00 0.00 0.00 3.32
1159 1166 3.149196 GGATCTTCTTGCCTTGTGTTGA 58.851 45.455 0.00 0.00 0.00 3.18
1200 1207 1.323271 TTTGGAACTTGGCGGCAACA 61.323 50.000 21.79 14.33 0.00 3.33
1306 1318 3.181367 GTCTCCTTCGACGCCGTA 58.819 61.111 0.00 0.00 37.05 4.02
1489 1507 2.379634 CGCCGTCGACATGCTCAAA 61.380 57.895 17.16 0.00 38.10 2.69
1966 1999 0.380378 GCAGGTGAGAAAACGCAACA 59.620 50.000 0.00 0.00 0.00 3.33
1969 2002 2.851824 CAGGTGAGAAAACGCAACAAAC 59.148 45.455 0.00 0.00 0.00 2.93
1992 2025 2.378038 ACATACATGCATTTTCCCGCT 58.622 42.857 0.00 0.00 0.00 5.52
2009 2042 2.412770 CCGCTGTAAATTTACGTCCGTT 59.587 45.455 20.51 0.00 36.45 4.44
2013 2051 4.719276 GCTGTAAATTTACGTCCGTTCGAC 60.719 45.833 20.51 0.00 36.45 4.20
2124 2163 2.365293 AGGCTGGCGACATTTTTCTTTT 59.635 40.909 0.00 0.00 41.51 2.27
2125 2164 3.130633 GGCTGGCGACATTTTTCTTTTT 58.869 40.909 0.00 0.00 41.51 1.94
2331 2406 0.458543 ATCTGACGCACGCCAACTAG 60.459 55.000 0.00 0.00 0.00 2.57
2332 2407 1.372997 CTGACGCACGCCAACTAGT 60.373 57.895 0.00 0.00 0.00 2.57
2333 2408 0.109458 CTGACGCACGCCAACTAGTA 60.109 55.000 0.00 0.00 0.00 1.82
2334 2409 0.109458 TGACGCACGCCAACTAGTAG 60.109 55.000 0.00 0.00 0.00 2.57
2378 2453 5.812286 TGGATTGATGGTGATATCAGATGG 58.188 41.667 5.42 0.00 38.25 3.51
2399 2474 1.732259 CCGCAAGCTAACGTTTCATCT 59.268 47.619 5.91 0.00 0.00 2.90
2519 2594 0.393537 GTGATGTCCTCCTTGGCCAG 60.394 60.000 5.11 0.00 35.26 4.85
2573 2648 0.821517 TGGACGAGATACAACGGCAT 59.178 50.000 0.00 0.00 39.47 4.40
2635 2711 4.612943 GTCTCCAGCTTAGTATACTGCAC 58.387 47.826 15.90 4.38 0.00 4.57
2706 2782 4.233005 GTCACGGTCTTGTAGGTCTAAAC 58.767 47.826 0.00 0.00 0.00 2.01
2717 2793 5.790593 TGTAGGTCTAAACTTAGCAAGGTG 58.209 41.667 0.00 0.00 0.00 4.00
2727 2803 4.074970 ACTTAGCAAGGTGGTGAATCAAG 58.925 43.478 0.00 0.00 0.00 3.02
2731 2807 2.233271 CAAGGTGGTGAATCAAGCTGT 58.767 47.619 0.00 0.00 0.00 4.40
2732 2808 3.411446 CAAGGTGGTGAATCAAGCTGTA 58.589 45.455 0.00 0.00 0.00 2.74
2733 2809 4.012374 CAAGGTGGTGAATCAAGCTGTAT 58.988 43.478 0.00 0.00 0.00 2.29
2786 2862 4.276678 TCCGGGTGATGTTTATACGAGTAG 59.723 45.833 0.00 0.00 0.00 2.57
2789 2865 6.444633 CGGGTGATGTTTATACGAGTAGAAT 58.555 40.000 0.00 0.00 0.00 2.40
2820 2904 1.067142 TCTCCACGGTACTGCAATCAC 60.067 52.381 0.23 0.00 0.00 3.06
2823 2907 1.337728 CCACGGTACTGCAATCACAGA 60.338 52.381 0.23 0.00 40.25 3.41
2837 2921 7.977904 TGCAATCACAGATAGATTAACAACAG 58.022 34.615 0.00 0.00 34.14 3.16
2838 2922 7.607607 TGCAATCACAGATAGATTAACAACAGT 59.392 33.333 0.00 0.00 34.14 3.55
2839 2923 8.454106 GCAATCACAGATAGATTAACAACAGTT 58.546 33.333 0.00 0.00 34.14 3.16
2840 2924 9.764870 CAATCACAGATAGATTAACAACAGTTG 57.235 33.333 12.03 12.03 34.14 3.16
2843 2927 9.419297 TCACAGATAGATTAACAACAGTTGTAC 57.581 33.333 19.45 11.03 44.59 2.90
2855 2940 7.299246 ACAACAGTTGTACTAGTACCTTGAT 57.701 36.000 26.41 15.01 43.27 2.57
2858 2943 7.098074 ACAGTTGTACTAGTACCTTGATAGC 57.902 40.000 26.41 11.42 35.26 2.97
2870 2955 2.477825 CTTGATAGCTGCTATGCGTGT 58.522 47.619 25.75 2.18 38.13 4.49
2872 2957 1.269778 TGATAGCTGCTATGCGTGTCC 60.270 52.381 25.75 10.52 38.13 4.02
2876 2961 1.779025 GCTGCTATGCGTGTCCATGG 61.779 60.000 4.97 4.97 0.00 3.66
2884 2969 1.443407 CGTGTCCATGGGCTCCTAG 59.557 63.158 19.09 0.00 0.00 3.02
2905 5182 3.314331 AGAGGTGGGAGTGCGGTG 61.314 66.667 0.00 0.00 0.00 4.94
2953 5230 1.051812 CCCGGAGAGGCAATACATCT 58.948 55.000 0.73 0.00 39.21 2.90
2972 5249 3.005205 TGCTGACGCAAGAACACAT 57.995 47.368 0.00 0.00 44.62 3.21
3001 5278 6.538742 ACACAATAAAGTCCCTCATACGATTG 59.461 38.462 0.00 0.00 0.00 2.67
3004 5281 2.898729 AGTCCCTCATACGATTGCAG 57.101 50.000 0.00 0.00 0.00 4.41
3055 5332 2.951269 GGGAAACCGGGTCGAAAAT 58.049 52.632 6.32 0.00 43.64 1.82
3095 5372 4.464951 GGGAAACCGGATAAGAAAACCATT 59.535 41.667 9.46 0.00 43.64 3.16
3111 5388 8.859090 AGAAAACCATTGATCAAGTTTATGTGA 58.141 29.630 20.09 0.00 32.38 3.58
3144 5421 3.251004 CGAAAACCATATAGCAAGAGGGC 59.749 47.826 0.00 0.00 0.00 5.19
3150 5427 4.263506 ACCATATAGCAAGAGGGCCAATAC 60.264 45.833 6.18 0.00 0.00 1.89
3161 5438 2.041620 AGGGCCAATACATATTGCCGAT 59.958 45.455 6.18 2.52 41.23 4.18
3172 5449 4.471761 TGCCGATGCAAGAACACA 57.528 50.000 0.00 0.00 46.66 3.72
3239 5516 4.039609 TGAGGGCATCACTATCACTACATG 59.960 45.833 0.00 0.00 31.12 3.21
3240 5517 4.226384 AGGGCATCACTATCACTACATGA 58.774 43.478 0.00 0.00 43.13 3.07
3312 5589 8.265165 CCTATTTAGGTGTTGGTAGAACTTTC 57.735 38.462 0.00 0.00 38.69 2.62
3330 5607 5.983540 ACTTTCATGTGATAGAGGAACCTC 58.016 41.667 12.42 12.42 43.03 3.85
3332 5609 2.959030 TCATGTGATAGAGGAACCTCGG 59.041 50.000 14.13 0.00 46.90 4.63
3343 5620 3.217231 ACCTCGGCGGTATTCAGG 58.783 61.111 7.21 7.89 46.73 3.86
3344 5621 2.280186 CCTCGGCGGTATTCAGGC 60.280 66.667 7.21 0.00 0.00 4.85
3345 5622 2.499205 CTCGGCGGTATTCAGGCA 59.501 61.111 7.21 0.00 34.41 4.75
3395 5673 6.288294 TCATAACCTCTTGATTTCCATACCG 58.712 40.000 0.00 0.00 0.00 4.02
3467 5746 6.939551 TTAAATCTAAACACCGAAGACTCG 57.060 37.500 0.00 0.00 45.02 4.18
3507 5787 0.326264 CTCTTCCTTGACCCACCTGG 59.674 60.000 0.00 0.00 41.37 4.45
3535 5815 4.516323 CACCAACATATCATGACTCCACA 58.484 43.478 0.00 0.00 0.00 4.17
3563 5843 1.810755 ACACATGCTCATCTGTTGCAG 59.189 47.619 0.00 0.00 40.18 4.41
3584 5864 3.900601 AGTAGCATATCAGGGACTCAAGG 59.099 47.826 0.00 0.00 34.60 3.61
3585 5865 2.769209 AGCATATCAGGGACTCAAGGT 58.231 47.619 0.00 0.00 34.60 3.50
3591 5871 1.920835 AGGGACTCAAGGTGCTCCC 60.921 63.158 0.00 0.00 36.48 4.30
3592 5872 2.224159 GGGACTCAAGGTGCTCCCA 61.224 63.158 0.00 0.00 37.36 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.281484 GCCTTGACAACGCCTCCA 60.281 61.111 0.00 0.00 0.00 3.86
3 4 3.056328 GGGCCTTGACAACGCCTC 61.056 66.667 22.40 12.29 42.58 4.70
4 5 3.553095 GAGGGCCTTGACAACGCCT 62.553 63.158 22.40 11.98 42.58 5.52
5 6 3.056328 GAGGGCCTTGACAACGCC 61.056 66.667 17.15 17.15 42.23 5.68
7 8 2.742372 CCGAGGGCCTTGACAACG 60.742 66.667 22.99 12.66 0.00 4.10
8 9 1.228154 AACCGAGGGCCTTGACAAC 60.228 57.895 22.99 0.00 0.00 3.32
9 10 1.228124 CAACCGAGGGCCTTGACAA 60.228 57.895 22.99 0.00 0.00 3.18
10 11 2.429930 CAACCGAGGGCCTTGACA 59.570 61.111 22.99 0.00 0.00 3.58
11 12 3.056328 GCAACCGAGGGCCTTGAC 61.056 66.667 22.99 0.83 0.00 3.18
12 13 4.697756 CGCAACCGAGGGCCTTGA 62.698 66.667 22.99 0.00 36.29 3.02
20 21 4.394712 AAGAGGGGCGCAACCGAG 62.395 66.667 10.83 0.00 40.62 4.63
21 22 4.388499 GAAGAGGGGCGCAACCGA 62.388 66.667 10.83 0.00 40.62 4.69
23 24 4.388499 TCGAAGAGGGGCGCAACC 62.388 66.667 10.83 11.52 37.93 3.77
34 35 0.608640 GTTTCCCCTGAGCTCGAAGA 59.391 55.000 9.64 0.11 0.00 2.87
35 36 0.391793 GGTTTCCCCTGAGCTCGAAG 60.392 60.000 9.64 1.24 0.00 3.79
36 37 1.677552 GGTTTCCCCTGAGCTCGAA 59.322 57.895 9.64 3.37 0.00 3.71
37 38 3.388841 GGTTTCCCCTGAGCTCGA 58.611 61.111 9.64 0.00 0.00 4.04
47 48 1.281287 GAACTGGACCTAGGGTTTCCC 59.719 57.143 14.81 6.60 45.90 3.97
48 49 1.281287 GGAACTGGACCTAGGGTTTCC 59.719 57.143 14.81 11.81 35.25 3.13
49 50 2.236644 GAGGAACTGGACCTAGGGTTTC 59.763 54.545 14.81 6.27 41.55 2.78
50 51 2.267192 GAGGAACTGGACCTAGGGTTT 58.733 52.381 14.81 0.00 41.55 3.27
51 52 1.555058 GGAGGAACTGGACCTAGGGTT 60.555 57.143 14.81 7.31 41.55 4.11
52 53 0.042881 GGAGGAACTGGACCTAGGGT 59.957 60.000 14.81 0.00 41.55 4.34
53 54 1.043673 CGGAGGAACTGGACCTAGGG 61.044 65.000 14.81 0.00 41.55 3.53
54 55 2.506065 CGGAGGAACTGGACCTAGG 58.494 63.158 7.41 7.41 41.55 3.02
76 77 4.129737 AGACACCGTCGCCATCCG 62.130 66.667 0.00 0.00 37.67 4.18
77 78 2.202756 GAGACACCGTCGCCATCC 60.203 66.667 0.00 0.00 37.67 3.51
78 79 2.579787 CGAGACACCGTCGCCATC 60.580 66.667 0.00 0.00 37.67 3.51
79 80 4.129737 CCGAGACACCGTCGCCAT 62.130 66.667 0.00 0.00 37.67 4.40
86 87 2.588146 AATACGACGCCGAGACACCG 62.588 60.000 0.00 0.00 39.50 4.94
87 88 0.864797 GAATACGACGCCGAGACACC 60.865 60.000 0.00 0.00 39.50 4.16
88 89 0.864797 GGAATACGACGCCGAGACAC 60.865 60.000 0.00 0.00 39.50 3.67
89 90 1.028330 AGGAATACGACGCCGAGACA 61.028 55.000 0.00 0.00 39.50 3.41
90 91 0.100146 AAGGAATACGACGCCGAGAC 59.900 55.000 0.00 0.00 39.50 3.36
91 92 0.379669 GAAGGAATACGACGCCGAGA 59.620 55.000 0.00 0.00 39.50 4.04
92 93 0.381089 AGAAGGAATACGACGCCGAG 59.619 55.000 0.00 0.00 39.50 4.63
93 94 0.813184 AAGAAGGAATACGACGCCGA 59.187 50.000 0.00 0.00 39.50 5.54
94 95 0.921347 CAAGAAGGAATACGACGCCG 59.079 55.000 0.00 0.00 42.50 6.46
95 96 2.288961 TCAAGAAGGAATACGACGCC 57.711 50.000 0.00 0.00 0.00 5.68
96 97 3.245519 GGATTCAAGAAGGAATACGACGC 59.754 47.826 0.00 0.00 37.61 5.19
101 102 3.541632 TGGCGGATTCAAGAAGGAATAC 58.458 45.455 0.00 0.00 37.61 1.89
102 103 3.924114 TGGCGGATTCAAGAAGGAATA 57.076 42.857 0.00 0.00 37.61 1.75
103 104 2.806945 TGGCGGATTCAAGAAGGAAT 57.193 45.000 0.00 0.00 40.10 3.01
104 105 2.239654 AGATGGCGGATTCAAGAAGGAA 59.760 45.455 0.00 0.00 0.00 3.36
105 106 1.839994 AGATGGCGGATTCAAGAAGGA 59.160 47.619 0.00 0.00 0.00 3.36
106 107 2.338577 AGATGGCGGATTCAAGAAGG 57.661 50.000 0.00 0.00 0.00 3.46
107 108 2.223433 GCAAGATGGCGGATTCAAGAAG 60.223 50.000 0.00 0.00 0.00 2.85
108 109 1.745087 GCAAGATGGCGGATTCAAGAA 59.255 47.619 0.00 0.00 0.00 2.52
109 110 1.065199 AGCAAGATGGCGGATTCAAGA 60.065 47.619 0.00 0.00 39.27 3.02
110 111 1.386533 AGCAAGATGGCGGATTCAAG 58.613 50.000 0.00 0.00 39.27 3.02
111 112 1.473677 CAAGCAAGATGGCGGATTCAA 59.526 47.619 0.00 0.00 39.27 2.69
112 113 1.097232 CAAGCAAGATGGCGGATTCA 58.903 50.000 0.00 0.00 39.27 2.57
113 114 0.383231 CCAAGCAAGATGGCGGATTC 59.617 55.000 0.00 0.00 39.27 2.52
114 115 0.323725 ACCAAGCAAGATGGCGGATT 60.324 50.000 0.00 0.00 41.89 3.01
115 116 0.749454 GACCAAGCAAGATGGCGGAT 60.749 55.000 0.00 0.00 41.89 4.18
116 117 1.377202 GACCAAGCAAGATGGCGGA 60.377 57.895 0.00 0.00 41.89 5.54
117 118 2.753966 CGACCAAGCAAGATGGCGG 61.754 63.158 0.00 0.00 41.89 6.13
118 119 2.787249 CGACCAAGCAAGATGGCG 59.213 61.111 0.00 0.00 41.89 5.69
119 120 2.486966 GCGACCAAGCAAGATGGC 59.513 61.111 0.00 0.00 41.89 4.40
120 121 2.753966 CCGCGACCAAGCAAGATGG 61.754 63.158 8.23 0.00 43.84 3.51
121 122 2.034879 ACCGCGACCAAGCAAGATG 61.035 57.895 8.23 0.00 36.85 2.90
122 123 2.034879 CACCGCGACCAAGCAAGAT 61.035 57.895 8.23 0.00 36.85 2.40
123 124 2.664851 CACCGCGACCAAGCAAGA 60.665 61.111 8.23 0.00 36.85 3.02
124 125 2.954753 GACACCGCGACCAAGCAAG 61.955 63.158 8.23 0.00 36.85 4.01
125 126 2.970324 GACACCGCGACCAAGCAA 60.970 61.111 8.23 0.00 36.85 3.91
126 127 4.980805 GGACACCGCGACCAAGCA 62.981 66.667 8.23 0.00 36.85 3.91
137 138 4.717313 GCCAAGACCGGGGACACC 62.717 72.222 6.32 0.00 0.00 4.16
138 139 3.607370 GAGCCAAGACCGGGGACAC 62.607 68.421 6.32 0.00 0.00 3.67
139 140 3.319198 GAGCCAAGACCGGGGACA 61.319 66.667 6.32 0.00 0.00 4.02
140 141 4.097361 GGAGCCAAGACCGGGGAC 62.097 72.222 6.32 0.00 0.00 4.46
141 142 4.649705 TGGAGCCAAGACCGGGGA 62.650 66.667 6.32 0.00 0.00 4.81
142 143 4.101448 CTGGAGCCAAGACCGGGG 62.101 72.222 6.32 0.00 0.00 5.73
143 144 4.785453 GCTGGAGCCAAGACCGGG 62.785 72.222 6.32 0.00 33.56 5.73
145 146 3.376935 ATCGCTGGAGCCAAGACCG 62.377 63.158 0.00 0.00 37.91 4.79
146 147 1.817099 CATCGCTGGAGCCAAGACC 60.817 63.158 0.00 0.00 37.91 3.85
147 148 0.674895 AACATCGCTGGAGCCAAGAC 60.675 55.000 0.00 0.00 37.91 3.01
148 149 0.674581 CAACATCGCTGGAGCCAAGA 60.675 55.000 0.00 0.00 37.91 3.02
149 150 1.651240 CCAACATCGCTGGAGCCAAG 61.651 60.000 0.00 0.00 35.85 3.61
150 151 1.675310 CCAACATCGCTGGAGCCAA 60.675 57.895 0.00 0.00 35.85 4.52
151 152 2.046023 CCAACATCGCTGGAGCCA 60.046 61.111 0.00 0.00 35.85 4.75
152 153 2.045926 ACCAACATCGCTGGAGCC 60.046 61.111 0.00 0.00 37.40 4.70
153 154 1.375908 TCACCAACATCGCTGGAGC 60.376 57.895 0.00 0.00 37.40 4.70
154 155 1.021390 GGTCACCAACATCGCTGGAG 61.021 60.000 0.00 0.00 37.40 3.86
155 156 1.003839 GGTCACCAACATCGCTGGA 60.004 57.895 0.00 0.00 37.40 3.86
156 157 0.606401 AAGGTCACCAACATCGCTGG 60.606 55.000 0.00 0.00 40.05 4.85
157 158 0.518636 CAAGGTCACCAACATCGCTG 59.481 55.000 0.00 0.00 0.00 5.18
158 159 0.108585 ACAAGGTCACCAACATCGCT 59.891 50.000 0.00 0.00 0.00 4.93
159 160 0.951558 AACAAGGTCACCAACATCGC 59.048 50.000 0.00 0.00 0.00 4.58
160 161 2.217750 TCAACAAGGTCACCAACATCG 58.782 47.619 0.00 0.00 0.00 3.84
161 162 4.613622 CGAATCAACAAGGTCACCAACATC 60.614 45.833 0.00 0.00 0.00 3.06
162 163 3.253188 CGAATCAACAAGGTCACCAACAT 59.747 43.478 0.00 0.00 0.00 2.71
163 164 2.616376 CGAATCAACAAGGTCACCAACA 59.384 45.455 0.00 0.00 0.00 3.33
164 165 2.875933 TCGAATCAACAAGGTCACCAAC 59.124 45.455 0.00 0.00 0.00 3.77
165 166 3.138304 CTCGAATCAACAAGGTCACCAA 58.862 45.455 0.00 0.00 0.00 3.67
166 167 2.104111 ACTCGAATCAACAAGGTCACCA 59.896 45.455 0.00 0.00 0.00 4.17
167 168 2.767505 ACTCGAATCAACAAGGTCACC 58.232 47.619 0.00 0.00 0.00 4.02
168 169 4.527564 CAAACTCGAATCAACAAGGTCAC 58.472 43.478 0.00 0.00 0.00 3.67
169 170 3.003275 GCAAACTCGAATCAACAAGGTCA 59.997 43.478 0.00 0.00 0.00 4.02
170 171 3.555518 GCAAACTCGAATCAACAAGGTC 58.444 45.455 0.00 0.00 0.00 3.85
171 172 2.293399 GGCAAACTCGAATCAACAAGGT 59.707 45.455 0.00 0.00 0.00 3.50
172 173 2.665519 CGGCAAACTCGAATCAACAAGG 60.666 50.000 0.00 0.00 0.00 3.61
173 174 2.574322 CGGCAAACTCGAATCAACAAG 58.426 47.619 0.00 0.00 0.00 3.16
174 175 1.334599 GCGGCAAACTCGAATCAACAA 60.335 47.619 0.00 0.00 0.00 2.83
175 176 0.237235 GCGGCAAACTCGAATCAACA 59.763 50.000 0.00 0.00 0.00 3.33
176 177 0.517316 AGCGGCAAACTCGAATCAAC 59.483 50.000 1.45 0.00 0.00 3.18
177 178 0.796312 GAGCGGCAAACTCGAATCAA 59.204 50.000 1.45 0.00 0.00 2.57
178 179 0.037326 AGAGCGGCAAACTCGAATCA 60.037 50.000 1.45 0.00 39.23 2.57
179 180 1.079503 AAGAGCGGCAAACTCGAATC 58.920 50.000 1.45 0.00 39.23 2.52
180 181 1.197721 CAAAGAGCGGCAAACTCGAAT 59.802 47.619 1.45 0.00 39.23 3.34
181 182 0.586319 CAAAGAGCGGCAAACTCGAA 59.414 50.000 1.45 0.00 39.23 3.71
182 183 0.531974 ACAAAGAGCGGCAAACTCGA 60.532 50.000 1.45 0.00 39.23 4.04
183 184 0.307760 AACAAAGAGCGGCAAACTCG 59.692 50.000 1.45 0.00 39.23 4.18
184 185 2.119457 CAAACAAAGAGCGGCAAACTC 58.881 47.619 1.45 0.00 0.00 3.01
185 186 1.202405 CCAAACAAAGAGCGGCAAACT 60.202 47.619 1.45 0.00 0.00 2.66
186 187 1.208259 CCAAACAAAGAGCGGCAAAC 58.792 50.000 1.45 0.00 0.00 2.93
187 188 0.103937 CCCAAACAAAGAGCGGCAAA 59.896 50.000 1.45 0.00 0.00 3.68
188 189 1.040339 ACCCAAACAAAGAGCGGCAA 61.040 50.000 1.45 0.00 0.00 4.52
189 190 1.040339 AACCCAAACAAAGAGCGGCA 61.040 50.000 1.45 0.00 0.00 5.69
190 191 0.104120 AAACCCAAACAAAGAGCGGC 59.896 50.000 0.00 0.00 0.00 6.53
191 192 1.537990 CCAAACCCAAACAAAGAGCGG 60.538 52.381 0.00 0.00 0.00 5.52
192 193 1.136110 ACCAAACCCAAACAAAGAGCG 59.864 47.619 0.00 0.00 0.00 5.03
193 194 2.979814 ACCAAACCCAAACAAAGAGC 57.020 45.000 0.00 0.00 0.00 4.09
194 195 3.958147 ACCTACCAAACCCAAACAAAGAG 59.042 43.478 0.00 0.00 0.00 2.85
195 196 3.983821 ACCTACCAAACCCAAACAAAGA 58.016 40.909 0.00 0.00 0.00 2.52
196 197 4.746535 AACCTACCAAACCCAAACAAAG 57.253 40.909 0.00 0.00 0.00 2.77
197 198 5.395435 GCTAAACCTACCAAACCCAAACAAA 60.395 40.000 0.00 0.00 0.00 2.83
198 199 4.099727 GCTAAACCTACCAAACCCAAACAA 59.900 41.667 0.00 0.00 0.00 2.83
199 200 3.637694 GCTAAACCTACCAAACCCAAACA 59.362 43.478 0.00 0.00 0.00 2.83
200 201 3.893200 AGCTAAACCTACCAAACCCAAAC 59.107 43.478 0.00 0.00 0.00 2.93
201 202 3.892588 CAGCTAAACCTACCAAACCCAAA 59.107 43.478 0.00 0.00 0.00 3.28
202 203 3.117436 ACAGCTAAACCTACCAAACCCAA 60.117 43.478 0.00 0.00 0.00 4.12
203 204 2.444010 ACAGCTAAACCTACCAAACCCA 59.556 45.455 0.00 0.00 0.00 4.51
204 205 2.817844 CACAGCTAAACCTACCAAACCC 59.182 50.000 0.00 0.00 0.00 4.11
205 206 3.483421 ACACAGCTAAACCTACCAAACC 58.517 45.455 0.00 0.00 0.00 3.27
206 207 4.337274 ACAACACAGCTAAACCTACCAAAC 59.663 41.667 0.00 0.00 0.00 2.93
207 208 4.528920 ACAACACAGCTAAACCTACCAAA 58.471 39.130 0.00 0.00 0.00 3.28
208 209 4.159244 ACAACACAGCTAAACCTACCAA 57.841 40.909 0.00 0.00 0.00 3.67
209 210 3.849563 ACAACACAGCTAAACCTACCA 57.150 42.857 0.00 0.00 0.00 3.25
210 211 5.731591 AGATACAACACAGCTAAACCTACC 58.268 41.667 0.00 0.00 0.00 3.18
211 212 7.097834 AGAAGATACAACACAGCTAAACCTAC 58.902 38.462 0.00 0.00 0.00 3.18
212 213 7.178628 AGAGAAGATACAACACAGCTAAACCTA 59.821 37.037 0.00 0.00 0.00 3.08
213 214 6.014156 AGAGAAGATACAACACAGCTAAACCT 60.014 38.462 0.00 0.00 0.00 3.50
214 215 6.166982 AGAGAAGATACAACACAGCTAAACC 58.833 40.000 0.00 0.00 0.00 3.27
215 216 7.410942 CGAAGAGAAGATACAACACAGCTAAAC 60.411 40.741 0.00 0.00 0.00 2.01
216 217 6.586463 CGAAGAGAAGATACAACACAGCTAAA 59.414 38.462 0.00 0.00 0.00 1.85
217 218 6.093404 CGAAGAGAAGATACAACACAGCTAA 58.907 40.000 0.00 0.00 0.00 3.09
218 219 5.393135 CCGAAGAGAAGATACAACACAGCTA 60.393 44.000 0.00 0.00 0.00 3.32
219 220 4.489810 CGAAGAGAAGATACAACACAGCT 58.510 43.478 0.00 0.00 0.00 4.24
220 221 3.614616 CCGAAGAGAAGATACAACACAGC 59.385 47.826 0.00 0.00 0.00 4.40
221 222 4.177026 CCCGAAGAGAAGATACAACACAG 58.823 47.826 0.00 0.00 0.00 3.66
222 223 3.616560 GCCCGAAGAGAAGATACAACACA 60.617 47.826 0.00 0.00 0.00 3.72
223 224 2.930682 GCCCGAAGAGAAGATACAACAC 59.069 50.000 0.00 0.00 0.00 3.32
224 225 2.832129 AGCCCGAAGAGAAGATACAACA 59.168 45.455 0.00 0.00 0.00 3.33
225 226 3.119101 TCAGCCCGAAGAGAAGATACAAC 60.119 47.826 0.00 0.00 0.00 3.32
226 227 3.096852 TCAGCCCGAAGAGAAGATACAA 58.903 45.455 0.00 0.00 0.00 2.41
227 228 2.690497 CTCAGCCCGAAGAGAAGATACA 59.310 50.000 0.00 0.00 33.74 2.29
228 229 2.544903 GCTCAGCCCGAAGAGAAGATAC 60.545 54.545 0.00 0.00 33.74 2.24
229 230 1.683917 GCTCAGCCCGAAGAGAAGATA 59.316 52.381 0.00 0.00 33.74 1.98
230 231 0.463620 GCTCAGCCCGAAGAGAAGAT 59.536 55.000 0.00 0.00 33.74 2.40
231 232 0.900182 TGCTCAGCCCGAAGAGAAGA 60.900 55.000 0.00 0.00 33.74 2.87
232 233 0.177604 ATGCTCAGCCCGAAGAGAAG 59.822 55.000 0.00 0.00 33.74 2.85
233 234 0.176680 GATGCTCAGCCCGAAGAGAA 59.823 55.000 0.00 0.00 33.74 2.87
234 235 1.680522 GGATGCTCAGCCCGAAGAGA 61.681 60.000 0.00 0.00 33.74 3.10
235 236 1.227497 GGATGCTCAGCCCGAAGAG 60.227 63.158 0.00 0.00 35.01 2.85
236 237 2.903357 GGATGCTCAGCCCGAAGA 59.097 61.111 0.00 0.00 0.00 2.87
242 243 0.034670 AAGACAAGGGATGCTCAGCC 60.035 55.000 0.00 0.00 35.80 4.85
243 244 1.742268 GAAAGACAAGGGATGCTCAGC 59.258 52.381 0.00 0.00 0.00 4.26
244 245 3.008330 CAGAAAGACAAGGGATGCTCAG 58.992 50.000 0.00 0.00 0.00 3.35
245 246 2.877300 GCAGAAAGACAAGGGATGCTCA 60.877 50.000 0.00 0.00 0.00 4.26
246 247 1.742268 GCAGAAAGACAAGGGATGCTC 59.258 52.381 0.00 0.00 0.00 4.26
247 248 1.353694 AGCAGAAAGACAAGGGATGCT 59.646 47.619 0.00 0.00 37.69 3.79
248 249 1.742268 GAGCAGAAAGACAAGGGATGC 59.258 52.381 0.00 0.00 0.00 3.91
249 250 2.363683 GGAGCAGAAAGACAAGGGATG 58.636 52.381 0.00 0.00 0.00 3.51
250 251 1.065854 CGGAGCAGAAAGACAAGGGAT 60.066 52.381 0.00 0.00 0.00 3.85
251 252 0.321671 CGGAGCAGAAAGACAAGGGA 59.678 55.000 0.00 0.00 0.00 4.20
252 253 0.674895 CCGGAGCAGAAAGACAAGGG 60.675 60.000 0.00 0.00 0.00 3.95
253 254 0.321671 TCCGGAGCAGAAAGACAAGG 59.678 55.000 0.00 0.00 0.00 3.61
254 255 1.270305 TGTCCGGAGCAGAAAGACAAG 60.270 52.381 3.06 0.00 0.00 3.16
255 256 0.756294 TGTCCGGAGCAGAAAGACAA 59.244 50.000 3.06 0.00 0.00 3.18
256 257 0.033504 GTGTCCGGAGCAGAAAGACA 59.966 55.000 3.06 0.00 0.00 3.41
257 258 0.670854 GGTGTCCGGAGCAGAAAGAC 60.671 60.000 3.06 0.00 0.00 3.01
258 259 1.118965 TGGTGTCCGGAGCAGAAAGA 61.119 55.000 3.06 0.00 0.00 2.52
259 260 0.036010 ATGGTGTCCGGAGCAGAAAG 60.036 55.000 3.06 0.00 0.00 2.62
260 261 0.321564 CATGGTGTCCGGAGCAGAAA 60.322 55.000 3.06 0.00 0.00 2.52
261 262 1.296392 CATGGTGTCCGGAGCAGAA 59.704 57.895 3.06 0.00 0.00 3.02
262 263 1.480212 AACATGGTGTCCGGAGCAGA 61.480 55.000 3.06 0.00 0.00 4.26
263 264 1.003355 AACATGGTGTCCGGAGCAG 60.003 57.895 3.06 0.00 0.00 4.24
264 265 1.003839 GAACATGGTGTCCGGAGCA 60.004 57.895 3.06 0.00 0.00 4.26
265 266 0.392998 ATGAACATGGTGTCCGGAGC 60.393 55.000 3.06 0.00 0.00 4.70
266 267 1.372582 CATGAACATGGTGTCCGGAG 58.627 55.000 3.06 0.00 35.24 4.63
267 268 0.676466 GCATGAACATGGTGTCCGGA 60.676 55.000 15.15 0.00 39.16 5.14
268 269 0.959867 TGCATGAACATGGTGTCCGG 60.960 55.000 15.15 0.00 39.16 5.14
269 270 1.097232 ATGCATGAACATGGTGTCCG 58.903 50.000 15.15 0.00 39.16 4.79
270 271 2.572191 CATGCATGAACATGGTGTCC 57.428 50.000 22.59 0.86 43.05 4.02
286 287 1.070821 ATGACACGAACGCAGACATG 58.929 50.000 0.00 0.00 0.00 3.21
287 288 1.070821 CATGACACGAACGCAGACAT 58.929 50.000 0.00 0.00 0.00 3.06
288 289 0.249280 ACATGACACGAACGCAGACA 60.249 50.000 0.00 0.00 0.00 3.41
289 290 0.161658 CACATGACACGAACGCAGAC 59.838 55.000 0.00 0.00 0.00 3.51
290 291 0.249280 ACACATGACACGAACGCAGA 60.249 50.000 0.00 0.00 0.00 4.26
291 292 0.581529 AACACATGACACGAACGCAG 59.418 50.000 0.00 0.00 0.00 5.18
292 293 0.303191 CAACACATGACACGAACGCA 59.697 50.000 0.00 0.00 0.00 5.24
293 294 0.303493 ACAACACATGACACGAACGC 59.697 50.000 0.00 0.00 0.00 4.84
294 295 2.097104 GGTACAACACATGACACGAACG 60.097 50.000 0.00 0.00 0.00 3.95
295 296 2.222445 GGGTACAACACATGACACGAAC 59.778 50.000 0.00 0.00 0.00 3.95
296 297 2.103432 AGGGTACAACACATGACACGAA 59.897 45.455 0.00 0.00 0.00 3.85
297 298 1.689813 AGGGTACAACACATGACACGA 59.310 47.619 0.00 0.00 0.00 4.35
298 299 2.163818 AGGGTACAACACATGACACG 57.836 50.000 0.00 0.00 0.00 4.49
299 300 6.821665 ACATATAAGGGTACAACACATGACAC 59.178 38.462 0.00 0.00 0.00 3.67
300 301 6.953101 ACATATAAGGGTACAACACATGACA 58.047 36.000 0.00 0.00 0.00 3.58
301 302 8.202137 AGTACATATAAGGGTACAACACATGAC 58.798 37.037 0.00 0.00 41.74 3.06
302 303 8.313944 AGTACATATAAGGGTACAACACATGA 57.686 34.615 0.00 0.00 41.74 3.07
303 304 8.958119 AAGTACATATAAGGGTACAACACATG 57.042 34.615 12.44 0.00 41.74 3.21
309 310 9.991906 GCAGAATAAGTACATATAAGGGTACAA 57.008 33.333 12.44 4.17 41.74 2.41
310 311 9.375974 AGCAGAATAAGTACATATAAGGGTACA 57.624 33.333 12.44 0.00 41.74 2.90
311 312 9.857957 GAGCAGAATAAGTACATATAAGGGTAC 57.142 37.037 0.00 0.00 40.06 3.34
312 313 9.032624 GGAGCAGAATAAGTACATATAAGGGTA 57.967 37.037 0.00 0.00 0.00 3.69
313 314 7.735321 AGGAGCAGAATAAGTACATATAAGGGT 59.265 37.037 0.00 0.00 0.00 4.34
314 315 8.140112 AGGAGCAGAATAAGTACATATAAGGG 57.860 38.462 0.00 0.00 0.00 3.95
315 316 9.646427 GAAGGAGCAGAATAAGTACATATAAGG 57.354 37.037 0.00 0.00 0.00 2.69
320 321 9.588096 TGATAGAAGGAGCAGAATAAGTACATA 57.412 33.333 0.00 0.00 0.00 2.29
321 322 8.484214 TGATAGAAGGAGCAGAATAAGTACAT 57.516 34.615 0.00 0.00 0.00 2.29
322 323 7.898014 TGATAGAAGGAGCAGAATAAGTACA 57.102 36.000 0.00 0.00 0.00 2.90
325 326 8.928448 TGTATTGATAGAAGGAGCAGAATAAGT 58.072 33.333 0.00 0.00 0.00 2.24
326 327 9.770097 TTGTATTGATAGAAGGAGCAGAATAAG 57.230 33.333 0.00 0.00 0.00 1.73
328 329 9.716531 CATTGTATTGATAGAAGGAGCAGAATA 57.283 33.333 0.00 0.00 0.00 1.75
329 330 8.435187 TCATTGTATTGATAGAAGGAGCAGAAT 58.565 33.333 0.00 0.00 0.00 2.40
330 331 7.795047 TCATTGTATTGATAGAAGGAGCAGAA 58.205 34.615 0.00 0.00 0.00 3.02
331 332 7.365497 TCATTGTATTGATAGAAGGAGCAGA 57.635 36.000 0.00 0.00 0.00 4.26
332 333 9.149225 GTATCATTGTATTGATAGAAGGAGCAG 57.851 37.037 2.54 0.00 38.83 4.24
333 334 7.814587 CGTATCATTGTATTGATAGAAGGAGCA 59.185 37.037 2.54 0.00 38.83 4.26
334 335 7.201478 GCGTATCATTGTATTGATAGAAGGAGC 60.201 40.741 2.54 0.00 38.83 4.70
335 336 7.814587 TGCGTATCATTGTATTGATAGAAGGAG 59.185 37.037 2.54 0.00 38.83 3.69
336 337 7.666623 TGCGTATCATTGTATTGATAGAAGGA 58.333 34.615 0.00 0.00 38.83 3.36
337 338 7.889589 TGCGTATCATTGTATTGATAGAAGG 57.110 36.000 0.00 0.00 38.83 3.46
338 339 7.954248 GCTTGCGTATCATTGTATTGATAGAAG 59.046 37.037 0.00 0.00 38.83 2.85
339 340 7.657354 AGCTTGCGTATCATTGTATTGATAGAA 59.343 33.333 0.00 0.00 38.83 2.10
340 341 7.154656 AGCTTGCGTATCATTGTATTGATAGA 58.845 34.615 0.00 0.00 38.83 1.98
341 342 7.356641 AGCTTGCGTATCATTGTATTGATAG 57.643 36.000 0.00 0.00 38.83 2.08
342 343 7.728847 AAGCTTGCGTATCATTGTATTGATA 57.271 32.000 0.00 0.00 37.51 2.15
343 344 6.624352 AAGCTTGCGTATCATTGTATTGAT 57.376 33.333 0.00 0.00 39.60 2.57
344 345 6.257423 CAAAGCTTGCGTATCATTGTATTGA 58.743 36.000 0.00 0.00 0.00 2.57
345 346 6.486657 CAAAGCTTGCGTATCATTGTATTG 57.513 37.500 0.00 0.00 0.00 1.90
497 502 0.575390 CTGACACGGACACACGTTTC 59.425 55.000 0.00 0.00 46.25 2.78
552 557 3.570125 GGGGTAGAGCAGGAAATATTTGC 59.430 47.826 11.44 11.44 38.09 3.68
598 603 1.811266 CTGATTGGGACGCGTGGAG 60.811 63.158 20.70 0.00 0.00 3.86
808 813 6.650807 GGGAGCTGACGATGATAAATTGATAA 59.349 38.462 0.00 0.00 0.00 1.75
809 814 6.014242 AGGGAGCTGACGATGATAAATTGATA 60.014 38.462 0.00 0.00 0.00 2.15
810 815 4.999950 GGGAGCTGACGATGATAAATTGAT 59.000 41.667 0.00 0.00 0.00 2.57
811 816 4.101585 AGGGAGCTGACGATGATAAATTGA 59.898 41.667 0.00 0.00 0.00 2.57
812 817 4.384056 AGGGAGCTGACGATGATAAATTG 58.616 43.478 0.00 0.00 0.00 2.32
813 818 4.696479 AGGGAGCTGACGATGATAAATT 57.304 40.909 0.00 0.00 0.00 1.82
814 819 4.696479 AAGGGAGCTGACGATGATAAAT 57.304 40.909 0.00 0.00 0.00 1.40
815 820 4.162320 AGAAAGGGAGCTGACGATGATAAA 59.838 41.667 0.00 0.00 0.00 1.40
941 947 2.009681 TGTGCTCTCCTGGTGAACTA 57.990 50.000 0.00 0.00 0.00 2.24
952 958 4.074970 TCTTGGAAATCCTTTGTGCTCTC 58.925 43.478 0.44 0.00 36.82 3.20
1089 1096 1.079503 GGCTTACAAGAACGCAGGAG 58.920 55.000 0.00 0.00 0.00 3.69
1306 1318 1.745489 GAAATGGAGGAAGGCGCGT 60.745 57.895 8.43 0.00 0.00 6.01
1966 1999 5.407995 CGGGAAAATGCATGTATGTTTGTTT 59.592 36.000 0.00 0.00 0.00 2.83
1969 2002 3.306703 GCGGGAAAATGCATGTATGTTTG 59.693 43.478 0.00 0.00 0.00 2.93
1992 2025 4.884257 GTCGAACGGACGTAAATTTACA 57.116 40.909 24.27 2.75 35.61 2.41
2013 2051 0.733150 TCGCTAGATATGCCGATCGG 59.267 55.000 30.03 30.03 38.57 4.18
2063 2101 1.664965 GCGACATATCCTCCGGCAC 60.665 63.158 0.00 0.00 0.00 5.01
2129 2168 1.933853 GTCGATGTCATCCCTTTTCGG 59.066 52.381 7.25 0.00 0.00 4.30
2135 2174 1.392710 GGTCGGTCGATGTCATCCCT 61.393 60.000 7.25 0.00 0.00 4.20
2268 2325 2.432628 GTCGCCCTTGTCGTCCAG 60.433 66.667 0.00 0.00 0.00 3.86
2349 2424 8.483758 TCTGATATCACCATCAATCCATCATAG 58.516 37.037 0.00 0.00 34.59 2.23
2351 2426 7.266905 TCTGATATCACCATCAATCCATCAT 57.733 36.000 0.00 0.00 34.59 2.45
2352 2427 6.691255 TCTGATATCACCATCAATCCATCA 57.309 37.500 0.00 0.00 34.59 3.07
2354 2429 6.424032 CCATCTGATATCACCATCAATCCAT 58.576 40.000 0.00 0.00 34.59 3.41
2355 2430 5.805424 GCCATCTGATATCACCATCAATCCA 60.805 44.000 0.00 0.00 34.59 3.41
2356 2431 4.639310 GCCATCTGATATCACCATCAATCC 59.361 45.833 0.00 0.00 34.59 3.01
2357 2432 4.639310 GGCCATCTGATATCACCATCAATC 59.361 45.833 0.00 0.00 34.59 2.67
2358 2433 4.597004 GGCCATCTGATATCACCATCAAT 58.403 43.478 0.00 0.00 34.59 2.57
2359 2434 3.557686 CGGCCATCTGATATCACCATCAA 60.558 47.826 2.24 0.00 34.59 2.57
2378 2453 0.168128 ATGAAACGTTAGCTTGCGGC 59.832 50.000 0.00 0.00 42.19 6.53
2399 2474 3.995705 GCTGCACAAAATTAGCCAATCAA 59.004 39.130 0.00 0.00 0.00 2.57
2528 2603 2.669569 CCACAACCTCCGGCACTG 60.670 66.667 0.00 0.00 0.00 3.66
2573 2648 3.173151 TCTCATCTCAACTTGGCCACTA 58.827 45.455 3.88 0.00 0.00 2.74
2635 2711 8.286800 TCTTGACGATTACACCAAATTAAACTG 58.713 33.333 0.00 0.00 0.00 3.16
2706 2782 3.119708 GCTTGATTCACCACCTTGCTAAG 60.120 47.826 0.00 0.00 0.00 2.18
2745 2821 3.056749 CCGGACATTACCTATAGCCTGAC 60.057 52.174 0.00 0.00 0.00 3.51
2752 2828 4.485875 ACATCACCCGGACATTACCTATA 58.514 43.478 0.73 0.00 0.00 1.31
2760 2836 3.385433 TCGTATAAACATCACCCGGACAT 59.615 43.478 0.73 0.00 0.00 3.06
2786 2862 4.083484 ACCGTGGAGAATTGTCGAAAATTC 60.083 41.667 26.93 26.93 43.79 2.17
2789 2865 2.841215 ACCGTGGAGAATTGTCGAAAA 58.159 42.857 0.00 0.00 0.00 2.29
2796 2872 2.093306 TGCAGTACCGTGGAGAATTG 57.907 50.000 0.00 0.00 0.00 2.32
2837 2921 5.978322 GCAGCTATCAAGGTACTAGTACAAC 59.022 44.000 29.38 16.08 38.49 3.32
2838 2922 5.892119 AGCAGCTATCAAGGTACTAGTACAA 59.108 40.000 29.38 14.85 38.49 2.41
2839 2923 5.446860 AGCAGCTATCAAGGTACTAGTACA 58.553 41.667 29.38 13.21 38.49 2.90
2840 2924 7.531716 CATAGCAGCTATCAAGGTACTAGTAC 58.468 42.308 22.53 22.53 38.49 2.73
2841 2925 6.151312 GCATAGCAGCTATCAAGGTACTAGTA 59.849 42.308 12.36 0.00 38.49 1.82
2842 2926 5.047660 GCATAGCAGCTATCAAGGTACTAGT 60.048 44.000 12.36 0.00 38.49 2.57
2843 2927 5.406649 GCATAGCAGCTATCAAGGTACTAG 58.593 45.833 12.36 0.00 38.49 2.57
2846 2931 2.989840 CGCATAGCAGCTATCAAGGTAC 59.010 50.000 12.36 0.00 0.00 3.34
2855 2940 0.752658 ATGGACACGCATAGCAGCTA 59.247 50.000 4.10 4.10 0.00 3.32
2858 2943 1.162181 CCCATGGACACGCATAGCAG 61.162 60.000 15.22 0.00 0.00 4.24
2960 5237 7.616103 TTATTGTGTTTTATGTGTTCTTGCG 57.384 32.000 0.00 0.00 0.00 4.85
2972 5249 8.095792 TCGTATGAGGGACTTTATTGTGTTTTA 58.904 33.333 0.00 0.00 41.55 1.52
2996 5273 3.200294 TGTGTTATTGTGCTGCAATCG 57.800 42.857 2.77 0.00 43.86 3.34
3001 5278 6.284475 TCAATTTTTGTGTTATTGTGCTGC 57.716 33.333 0.00 0.00 32.49 5.25
3004 5281 6.284475 TGCTCAATTTTTGTGTTATTGTGC 57.716 33.333 11.82 11.82 43.57 4.57
3011 5288 8.389603 CACATAAACTTGCTCAATTTTTGTGTT 58.610 29.630 18.50 5.00 33.68 3.32
3055 5332 9.019656 CCGGTTTCCCATATAAATAAATCATGA 57.980 33.333 0.00 0.00 0.00 3.07
3075 5352 6.435904 TGATCAATGGTTTTCTTATCCGGTTT 59.564 34.615 0.00 0.00 0.00 3.27
3084 5361 9.480053 CACATAAACTTGATCAATGGTTTTCTT 57.520 29.630 23.13 11.45 34.40 2.52
3086 5363 9.474920 TTCACATAAACTTGATCAATGGTTTTC 57.525 29.630 23.13 0.00 34.40 2.29
3095 5372 8.105097 TCCGATTTTTCACATAAACTTGATCA 57.895 30.769 0.00 0.00 0.00 2.92
3111 5388 7.012894 TGCTATATGGTTTTCGATCCGATTTTT 59.987 33.333 0.00 0.00 35.23 1.94
3118 5395 5.409826 CCTCTTGCTATATGGTTTTCGATCC 59.590 44.000 0.00 0.00 0.00 3.36
3161 5438 8.932945 TGTATTTTGTTTTATGTGTTCTTGCA 57.067 26.923 0.00 0.00 0.00 4.08
3203 5480 3.176552 TGCCCTCAATGTTTTGTGTTG 57.823 42.857 0.00 0.00 34.32 3.33
3217 5494 4.281941 TCATGTAGTGATAGTGATGCCCTC 59.718 45.833 0.00 0.00 0.00 4.30
3305 5582 6.410540 AGGTTCCTCTATCACATGAAAGTTC 58.589 40.000 0.00 0.00 0.00 3.01
3312 5589 2.546795 GCCGAGGTTCCTCTATCACATG 60.547 54.545 15.60 0.00 0.00 3.21
3330 5607 2.125310 TGTGCCTGAATACCGCCG 60.125 61.111 0.00 0.00 0.00 6.46
3332 5609 0.673644 ACACTGTGCCTGAATACCGC 60.674 55.000 7.90 0.00 0.00 5.68
3344 5621 7.467557 AAAATCTATTGTTTTGCACACTGTG 57.532 32.000 6.19 6.19 33.98 3.66
3467 5746 5.812642 AGAGAACACATCATGGTTTCGATAC 59.187 40.000 0.00 0.00 0.00 2.24
3507 5787 6.293626 GGAGTCATGATATGTTGGTGCAATAC 60.294 42.308 0.00 0.00 0.00 1.89
3535 5815 6.579666 ACAGATGAGCATGTGTAAAAACAT 57.420 33.333 11.04 0.00 42.55 2.71
3563 5843 3.643792 ACCTTGAGTCCCTGATATGCTAC 59.356 47.826 0.00 0.00 0.00 3.58
3574 5854 2.671682 GGGAGCACCTTGAGTCCC 59.328 66.667 0.00 0.00 42.07 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.