Multiple sequence alignment - TraesCS2B01G359000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2B01G359000 chr2B 100.000 3087 0 0 1 3087 512341463 512344549 0.000000e+00 5701.0
1 TraesCS2B01G359000 chr2B 92.930 1372 41 25 823 2190 504829161 504827842 0.000000e+00 1945.0
2 TraesCS2B01G359000 chr2B 88.827 179 16 3 2248 2425 504827899 504827724 1.860000e-52 217.0
3 TraesCS2B01G359000 chr2B 100.000 114 0 0 2191 2304 512343596 512343709 8.670000e-51 211.0
4 TraesCS2B01G359000 chr2B 100.000 114 0 0 2134 2247 512343653 512343766 8.670000e-51 211.0
5 TraesCS2B01G359000 chr2B 100.000 57 0 0 2248 2304 512343596 512343652 4.210000e-19 106.0
6 TraesCS2B01G359000 chr2B 100.000 57 0 0 2134 2190 512343710 512343766 4.210000e-19 106.0
7 TraesCS2B01G359000 chr2B 96.078 51 2 0 737 787 504829214 504829164 1.970000e-12 84.2
8 TraesCS2B01G359000 chr2D 97.001 1367 31 3 823 2189 427958563 427957207 0.000000e+00 2289.0
9 TraesCS2B01G359000 chr2D 88.323 668 55 12 2433 3087 427957109 427956452 0.000000e+00 780.0
10 TraesCS2B01G359000 chr2D 96.026 151 5 1 2248 2397 427957262 427957112 8.550000e-61 244.0
11 TraesCS2B01G359000 chr2D 80.186 323 29 16 494 787 427958882 427958566 3.120000e-50 209.0
12 TraesCS2B01G359000 chr2D 98.214 56 1 0 2191 2246 427957262 427957207 7.040000e-17 99.0
13 TraesCS2B01G359000 chr2A 94.234 1370 47 13 823 2190 559620685 559622024 0.000000e+00 2063.0
14 TraesCS2B01G359000 chr2A 86.166 853 86 19 2248 3087 559621967 559622800 0.000000e+00 893.0
15 TraesCS2B01G359000 chr2A 80.357 168 18 9 633 787 559620517 559620682 2.520000e-21 113.0
16 TraesCS2B01G359000 chr2A 94.828 58 2 1 2191 2247 559621967 559622024 4.240000e-14 89.8
17 TraesCS2B01G359000 chr7D 88.989 445 36 8 1311 1745 564577658 564578099 3.500000e-149 538.0
18 TraesCS2B01G359000 chr7D 89.895 287 21 5 1774 2053 563684408 563684693 2.260000e-96 363.0
19 TraesCS2B01G359000 chr7D 79.021 143 25 5 2588 2727 29720024 29720164 3.280000e-15 93.5
20 TraesCS2B01G359000 chr7D 95.000 40 1 1 2697 2735 29720178 29720217 9.240000e-06 62.1
21 TraesCS2B01G359000 chr6A 79.553 626 94 18 1148 1745 358573553 358572934 1.710000e-112 416.0
22 TraesCS2B01G359000 chr6D 82.799 343 44 7 1416 1745 263044214 263043874 3.010000e-75 292.0
23 TraesCS2B01G359000 chr7B 93.590 156 10 0 1901 2056 614282312 614282157 1.850000e-57 233.0
24 TraesCS2B01G359000 chr7B 83.212 274 27 10 1593 1859 614282572 614282311 1.850000e-57 233.0
25 TraesCS2B01G359000 chr7B 98.529 68 1 0 1448 1515 614282681 614282614 1.500000e-23 121.0
26 TraesCS2B01G359000 chr6B 85.600 125 18 0 492 616 659664353 659664229 6.950000e-27 132.0
27 TraesCS2B01G359000 chr1B 83.594 128 21 0 508 635 327484256 327484383 1.500000e-23 121.0
28 TraesCS2B01G359000 chr1B 84.071 113 14 4 527 637 156847309 156847419 4.210000e-19 106.0
29 TraesCS2B01G359000 chr1D 86.957 92 11 1 492 583 396271928 396271838 5.450000e-18 102.0
30 TraesCS2B01G359000 chr4D 81.600 125 19 4 2604 2726 69943648 69943526 1.960000e-17 100.0
31 TraesCS2B01G359000 chr4B 78.014 141 26 5 367 504 654706025 654706163 1.970000e-12 84.2
32 TraesCS2B01G359000 chr4B 78.295 129 25 3 378 504 654645264 654645391 2.550000e-11 80.5
33 TraesCS2B01G359000 chr4B 77.143 140 29 3 367 504 654628303 654628441 9.180000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2B01G359000 chr2B 512341463 512344549 3086 False 1267.000000 5701 100.000000 1 3087 5 chr2B.!!$F1 3086
1 TraesCS2B01G359000 chr2B 504827724 504829214 1490 True 748.733333 1945 92.611667 737 2425 3 chr2B.!!$R1 1688
2 TraesCS2B01G359000 chr2D 427956452 427958882 2430 True 724.200000 2289 91.950000 494 3087 5 chr2D.!!$R1 2593
3 TraesCS2B01G359000 chr2A 559620517 559622800 2283 False 789.700000 2063 88.896250 633 3087 4 chr2A.!!$F1 2454
4 TraesCS2B01G359000 chr6A 358572934 358573553 619 True 416.000000 416 79.553000 1148 1745 1 chr6A.!!$R1 597

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 253 0.032952 AGTCGCCAGCGTACAGAAAA 59.967 50.0 12.32 0.0 40.74 2.29 F
295 296 0.179018 ACGCAAGGGACTGAAAGCTT 60.179 50.0 0.00 0.0 40.86 3.74 F
317 318 0.319727 CCGAGGAGAGCATGCATCTC 60.320 60.0 26.20 26.2 42.08 2.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1390 1423 1.203313 CGCGAACCGAGGTCAAAAC 59.797 57.895 0.00 0.00 40.02 2.43 R
1401 1434 1.917921 CGACAGATTAGCGCGAACC 59.082 57.895 12.10 0.00 0.00 3.62 R
2216 2274 2.680841 TCGACTGAAGCTTAGCTCTCTC 59.319 50.000 7.36 1.92 38.25 3.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.590719 AAAAACCACAAAGTAAAACGAAGAAA 57.409 26.923 0.00 0.00 0.00 2.52
30 31 8.590719 AAAACCACAAAGTAAAACGAAGAAAA 57.409 26.923 0.00 0.00 0.00 2.29
31 32 7.571089 AACCACAAAGTAAAACGAAGAAAAC 57.429 32.000 0.00 0.00 0.00 2.43
32 33 6.679843 ACCACAAAGTAAAACGAAGAAAACA 58.320 32.000 0.00 0.00 0.00 2.83
33 34 6.804783 ACCACAAAGTAAAACGAAGAAAACAG 59.195 34.615 0.00 0.00 0.00 3.16
34 35 7.024768 CCACAAAGTAAAACGAAGAAAACAGA 58.975 34.615 0.00 0.00 0.00 3.41
35 36 7.700656 CCACAAAGTAAAACGAAGAAAACAGAT 59.299 33.333 0.00 0.00 0.00 2.90
36 37 8.523464 CACAAAGTAAAACGAAGAAAACAGATG 58.477 33.333 0.00 0.00 0.00 2.90
37 38 8.455682 ACAAAGTAAAACGAAGAAAACAGATGA 58.544 29.630 0.00 0.00 0.00 2.92
38 39 9.450807 CAAAGTAAAACGAAGAAAACAGATGAT 57.549 29.630 0.00 0.00 0.00 2.45
42 43 9.326339 GTAAAACGAAGAAAACAGATGATAACC 57.674 33.333 0.00 0.00 0.00 2.85
43 44 5.779806 ACGAAGAAAACAGATGATAACCG 57.220 39.130 0.00 0.00 0.00 4.44
44 45 5.475719 ACGAAGAAAACAGATGATAACCGA 58.524 37.500 0.00 0.00 0.00 4.69
45 46 5.577164 ACGAAGAAAACAGATGATAACCGAG 59.423 40.000 0.00 0.00 0.00 4.63
46 47 5.805486 CGAAGAAAACAGATGATAACCGAGA 59.195 40.000 0.00 0.00 0.00 4.04
47 48 6.310467 CGAAGAAAACAGATGATAACCGAGAA 59.690 38.462 0.00 0.00 0.00 2.87
48 49 7.148639 CGAAGAAAACAGATGATAACCGAGAAA 60.149 37.037 0.00 0.00 0.00 2.52
49 50 7.602517 AGAAAACAGATGATAACCGAGAAAG 57.397 36.000 0.00 0.00 0.00 2.62
50 51 7.386851 AGAAAACAGATGATAACCGAGAAAGA 58.613 34.615 0.00 0.00 0.00 2.52
51 52 7.878127 AGAAAACAGATGATAACCGAGAAAGAA 59.122 33.333 0.00 0.00 0.00 2.52
52 53 7.979444 AAACAGATGATAACCGAGAAAGAAA 57.021 32.000 0.00 0.00 0.00 2.52
53 54 6.969828 ACAGATGATAACCGAGAAAGAAAC 57.030 37.500 0.00 0.00 0.00 2.78
54 55 6.464222 ACAGATGATAACCGAGAAAGAAACA 58.536 36.000 0.00 0.00 0.00 2.83
55 56 6.934645 ACAGATGATAACCGAGAAAGAAACAA 59.065 34.615 0.00 0.00 0.00 2.83
56 57 7.444183 ACAGATGATAACCGAGAAAGAAACAAA 59.556 33.333 0.00 0.00 0.00 2.83
57 58 7.959651 CAGATGATAACCGAGAAAGAAACAAAG 59.040 37.037 0.00 0.00 0.00 2.77
58 59 7.878127 AGATGATAACCGAGAAAGAAACAAAGA 59.122 33.333 0.00 0.00 0.00 2.52
59 60 7.795482 TGATAACCGAGAAAGAAACAAAGAA 57.205 32.000 0.00 0.00 0.00 2.52
60 61 8.215926 TGATAACCGAGAAAGAAACAAAGAAA 57.784 30.769 0.00 0.00 0.00 2.52
61 62 8.342634 TGATAACCGAGAAAGAAACAAAGAAAG 58.657 33.333 0.00 0.00 0.00 2.62
62 63 4.921547 ACCGAGAAAGAAACAAAGAAAGC 58.078 39.130 0.00 0.00 0.00 3.51
63 64 4.202020 ACCGAGAAAGAAACAAAGAAAGCC 60.202 41.667 0.00 0.00 0.00 4.35
64 65 4.202010 CCGAGAAAGAAACAAAGAAAGCCA 60.202 41.667 0.00 0.00 0.00 4.75
65 66 5.339990 CGAGAAAGAAACAAAGAAAGCCAA 58.660 37.500 0.00 0.00 0.00 4.52
66 67 5.804979 CGAGAAAGAAACAAAGAAAGCCAAA 59.195 36.000 0.00 0.00 0.00 3.28
67 68 6.310224 CGAGAAAGAAACAAAGAAAGCCAAAA 59.690 34.615 0.00 0.00 0.00 2.44
68 69 7.148656 CGAGAAAGAAACAAAGAAAGCCAAAAA 60.149 33.333 0.00 0.00 0.00 1.94
100 101 3.744940 TCCGAGGGGAACTAGTAAGAA 57.255 47.619 0.00 0.00 40.15 2.52
101 102 4.051661 TCCGAGGGGAACTAGTAAGAAA 57.948 45.455 0.00 0.00 40.15 2.52
102 103 4.419282 TCCGAGGGGAACTAGTAAGAAAA 58.581 43.478 0.00 0.00 40.15 2.29
103 104 4.465305 TCCGAGGGGAACTAGTAAGAAAAG 59.535 45.833 0.00 0.00 40.15 2.27
104 105 4.222366 CCGAGGGGAACTAGTAAGAAAAGT 59.778 45.833 0.00 0.00 34.06 2.66
105 106 5.169295 CGAGGGGAACTAGTAAGAAAAGTG 58.831 45.833 0.00 0.00 0.00 3.16
106 107 5.047519 CGAGGGGAACTAGTAAGAAAAGTGA 60.048 44.000 0.00 0.00 0.00 3.41
107 108 6.517864 CGAGGGGAACTAGTAAGAAAAGTGAA 60.518 42.308 0.00 0.00 0.00 3.18
108 109 7.145474 AGGGGAACTAGTAAGAAAAGTGAAA 57.855 36.000 0.00 0.00 0.00 2.69
109 110 7.580007 AGGGGAACTAGTAAGAAAAGTGAAAA 58.420 34.615 0.00 0.00 0.00 2.29
110 111 7.501559 AGGGGAACTAGTAAGAAAAGTGAAAAC 59.498 37.037 0.00 0.00 0.00 2.43
111 112 7.350467 GGGAACTAGTAAGAAAAGTGAAAACG 58.650 38.462 0.00 0.00 0.00 3.60
112 113 7.225341 GGGAACTAGTAAGAAAAGTGAAAACGA 59.775 37.037 0.00 0.00 0.00 3.85
113 114 8.274248 GGAACTAGTAAGAAAAGTGAAAACGAG 58.726 37.037 0.00 0.00 0.00 4.18
114 115 8.937634 AACTAGTAAGAAAAGTGAAAACGAGA 57.062 30.769 0.00 0.00 0.00 4.04
115 116 8.937634 ACTAGTAAGAAAAGTGAAAACGAGAA 57.062 30.769 0.00 0.00 0.00 2.87
116 117 9.032420 ACTAGTAAGAAAAGTGAAAACGAGAAG 57.968 33.333 0.00 0.00 0.00 2.85
117 118 7.247929 AGTAAGAAAAGTGAAAACGAGAAGG 57.752 36.000 0.00 0.00 0.00 3.46
118 119 7.046033 AGTAAGAAAAGTGAAAACGAGAAGGA 58.954 34.615 0.00 0.00 0.00 3.36
119 120 6.753107 AAGAAAAGTGAAAACGAGAAGGAA 57.247 33.333 0.00 0.00 0.00 3.36
120 121 6.753107 AGAAAAGTGAAAACGAGAAGGAAA 57.247 33.333 0.00 0.00 0.00 3.13
121 122 6.552629 AGAAAAGTGAAAACGAGAAGGAAAC 58.447 36.000 0.00 0.00 0.00 2.78
122 123 5.890424 AAAGTGAAAACGAGAAGGAAACA 57.110 34.783 0.00 0.00 0.00 2.83
123 124 5.890424 AAGTGAAAACGAGAAGGAAACAA 57.110 34.783 0.00 0.00 0.00 2.83
124 125 5.890424 AGTGAAAACGAGAAGGAAACAAA 57.110 34.783 0.00 0.00 0.00 2.83
125 126 5.880341 AGTGAAAACGAGAAGGAAACAAAG 58.120 37.500 0.00 0.00 0.00 2.77
126 127 5.646360 AGTGAAAACGAGAAGGAAACAAAGA 59.354 36.000 0.00 0.00 0.00 2.52
127 128 6.150474 AGTGAAAACGAGAAGGAAACAAAGAA 59.850 34.615 0.00 0.00 0.00 2.52
128 129 6.804783 GTGAAAACGAGAAGGAAACAAAGAAA 59.195 34.615 0.00 0.00 0.00 2.52
129 130 7.327518 GTGAAAACGAGAAGGAAACAAAGAAAA 59.672 33.333 0.00 0.00 0.00 2.29
130 131 7.868415 TGAAAACGAGAAGGAAACAAAGAAAAA 59.132 29.630 0.00 0.00 0.00 1.94
171 172 8.966069 AAAAATAAAGGAATGGAAAACCGAAA 57.034 26.923 0.00 0.00 0.00 3.46
172 173 8.966069 AAAATAAAGGAATGGAAAACCGAAAA 57.034 26.923 0.00 0.00 0.00 2.29
173 174 8.966069 AAATAAAGGAATGGAAAACCGAAAAA 57.034 26.923 0.00 0.00 0.00 1.94
174 175 7.956420 ATAAAGGAATGGAAAACCGAAAAAC 57.044 32.000 0.00 0.00 0.00 2.43
175 176 4.330944 AGGAATGGAAAACCGAAAAACC 57.669 40.909 0.00 0.00 0.00 3.27
176 177 3.070446 AGGAATGGAAAACCGAAAAACCC 59.930 43.478 0.00 0.00 0.00 4.11
177 178 3.181464 GGAATGGAAAACCGAAAAACCCA 60.181 43.478 0.00 0.00 0.00 4.51
178 179 4.504165 GGAATGGAAAACCGAAAAACCCAT 60.504 41.667 0.00 0.00 34.70 4.00
179 180 5.279556 GGAATGGAAAACCGAAAAACCCATA 60.280 40.000 0.00 0.00 33.09 2.74
180 181 4.857509 TGGAAAACCGAAAAACCCATAG 57.142 40.909 0.00 0.00 0.00 2.23
181 182 4.471548 TGGAAAACCGAAAAACCCATAGA 58.528 39.130 0.00 0.00 0.00 1.98
182 183 4.894114 TGGAAAACCGAAAAACCCATAGAA 59.106 37.500 0.00 0.00 0.00 2.10
183 184 5.363005 TGGAAAACCGAAAAACCCATAGAAA 59.637 36.000 0.00 0.00 0.00 2.52
184 185 6.127140 TGGAAAACCGAAAAACCCATAGAAAA 60.127 34.615 0.00 0.00 0.00 2.29
185 186 6.422701 GGAAAACCGAAAAACCCATAGAAAAG 59.577 38.462 0.00 0.00 0.00 2.27
186 187 4.514781 ACCGAAAAACCCATAGAAAAGC 57.485 40.909 0.00 0.00 0.00 3.51
187 188 3.892588 ACCGAAAAACCCATAGAAAAGCA 59.107 39.130 0.00 0.00 0.00 3.91
188 189 4.342665 ACCGAAAAACCCATAGAAAAGCAA 59.657 37.500 0.00 0.00 0.00 3.91
189 190 4.684242 CCGAAAAACCCATAGAAAAGCAAC 59.316 41.667 0.00 0.00 0.00 4.17
190 191 4.381566 CGAAAAACCCATAGAAAAGCAACG 59.618 41.667 0.00 0.00 0.00 4.10
191 192 5.523438 AAAAACCCATAGAAAAGCAACGA 57.477 34.783 0.00 0.00 0.00 3.85
192 193 5.523438 AAAACCCATAGAAAAGCAACGAA 57.477 34.783 0.00 0.00 0.00 3.85
193 194 5.523438 AAACCCATAGAAAAGCAACGAAA 57.477 34.783 0.00 0.00 0.00 3.46
194 195 5.722021 AACCCATAGAAAAGCAACGAAAT 57.278 34.783 0.00 0.00 0.00 2.17
195 196 6.827586 AACCCATAGAAAAGCAACGAAATA 57.172 33.333 0.00 0.00 0.00 1.40
196 197 6.190954 ACCCATAGAAAAGCAACGAAATAC 57.809 37.500 0.00 0.00 0.00 1.89
197 198 5.124936 ACCCATAGAAAAGCAACGAAATACC 59.875 40.000 0.00 0.00 0.00 2.73
198 199 5.449999 CCCATAGAAAAGCAACGAAATACCC 60.450 44.000 0.00 0.00 0.00 3.69
199 200 5.449999 CCATAGAAAAGCAACGAAATACCCC 60.450 44.000 0.00 0.00 0.00 4.95
200 201 3.492337 AGAAAAGCAACGAAATACCCCA 58.508 40.909 0.00 0.00 0.00 4.96
201 202 3.506067 AGAAAAGCAACGAAATACCCCAG 59.494 43.478 0.00 0.00 0.00 4.45
202 203 1.173913 AAGCAACGAAATACCCCAGC 58.826 50.000 0.00 0.00 0.00 4.85
203 204 0.328258 AGCAACGAAATACCCCAGCT 59.672 50.000 0.00 0.00 0.00 4.24
204 205 1.557832 AGCAACGAAATACCCCAGCTA 59.442 47.619 0.00 0.00 0.00 3.32
205 206 2.026636 AGCAACGAAATACCCCAGCTAA 60.027 45.455 0.00 0.00 0.00 3.09
206 207 2.096980 GCAACGAAATACCCCAGCTAAC 59.903 50.000 0.00 0.00 0.00 2.34
207 208 2.304751 ACGAAATACCCCAGCTAACG 57.695 50.000 0.00 0.00 0.00 3.18
208 209 1.826720 ACGAAATACCCCAGCTAACGA 59.173 47.619 0.00 0.00 0.00 3.85
209 210 2.159142 ACGAAATACCCCAGCTAACGAG 60.159 50.000 0.00 0.00 0.00 4.18
222 223 3.917329 CTAACGAGCATCCTTATCCGA 57.083 47.619 0.00 0.00 0.00 4.55
223 224 4.238761 CTAACGAGCATCCTTATCCGAA 57.761 45.455 0.00 0.00 0.00 4.30
224 225 3.536956 AACGAGCATCCTTATCCGAAA 57.463 42.857 0.00 0.00 0.00 3.46
225 226 3.536956 ACGAGCATCCTTATCCGAAAA 57.463 42.857 0.00 0.00 0.00 2.29
226 227 3.195661 ACGAGCATCCTTATCCGAAAAC 58.804 45.455 0.00 0.00 0.00 2.43
227 228 2.544267 CGAGCATCCTTATCCGAAAACC 59.456 50.000 0.00 0.00 0.00 3.27
228 229 2.544267 GAGCATCCTTATCCGAAAACCG 59.456 50.000 0.00 0.00 38.18 4.44
229 230 2.169769 AGCATCCTTATCCGAAAACCGA 59.830 45.455 0.00 0.00 41.76 4.69
230 231 2.940410 GCATCCTTATCCGAAAACCGAA 59.060 45.455 0.00 0.00 41.76 4.30
231 232 3.564225 GCATCCTTATCCGAAAACCGAAT 59.436 43.478 0.00 0.00 41.76 3.34
232 233 4.554723 GCATCCTTATCCGAAAACCGAATG 60.555 45.833 0.00 0.00 41.76 2.67
233 234 4.475051 TCCTTATCCGAAAACCGAATGA 57.525 40.909 0.00 0.00 41.76 2.57
234 235 4.439057 TCCTTATCCGAAAACCGAATGAG 58.561 43.478 0.00 0.00 41.76 2.90
235 236 4.081309 TCCTTATCCGAAAACCGAATGAGT 60.081 41.667 0.00 0.00 41.76 3.41
236 237 4.270325 CCTTATCCGAAAACCGAATGAGTC 59.730 45.833 0.00 0.00 41.76 3.36
244 245 2.507102 CGAATGAGTCGCCAGCGT 60.507 61.111 12.32 0.00 44.14 5.07
245 246 1.226575 CGAATGAGTCGCCAGCGTA 60.227 57.895 12.32 0.00 44.14 4.42
246 247 1.472276 CGAATGAGTCGCCAGCGTAC 61.472 60.000 12.32 8.94 44.14 3.67
247 248 0.457853 GAATGAGTCGCCAGCGTACA 60.458 55.000 12.32 10.74 40.74 2.90
248 249 0.458543 AATGAGTCGCCAGCGTACAG 60.459 55.000 12.32 0.00 40.74 2.74
249 250 1.313091 ATGAGTCGCCAGCGTACAGA 61.313 55.000 12.32 1.05 40.74 3.41
250 251 1.211969 GAGTCGCCAGCGTACAGAA 59.788 57.895 12.32 0.00 40.74 3.02
251 252 0.388134 GAGTCGCCAGCGTACAGAAA 60.388 55.000 12.32 0.00 40.74 2.52
252 253 0.032952 AGTCGCCAGCGTACAGAAAA 59.967 50.000 12.32 0.00 40.74 2.29
253 254 0.863144 GTCGCCAGCGTACAGAAAAA 59.137 50.000 12.32 0.00 40.74 1.94
268 269 3.896854 AAAAAGGATAGACCGGGCC 57.103 52.632 1.76 0.00 44.74 5.80
269 270 0.996583 AAAAAGGATAGACCGGGCCA 59.003 50.000 1.76 0.00 44.74 5.36
270 271 0.996583 AAAAGGATAGACCGGGCCAA 59.003 50.000 1.76 0.00 44.74 4.52
271 272 1.222567 AAAGGATAGACCGGGCCAAT 58.777 50.000 1.76 0.00 44.74 3.16
272 273 2.112279 AAGGATAGACCGGGCCAATA 57.888 50.000 1.76 0.00 44.74 1.90
273 274 1.349067 AGGATAGACCGGGCCAATAC 58.651 55.000 1.76 0.00 44.74 1.89
274 275 0.323957 GGATAGACCGGGCCAATACC 59.676 60.000 1.76 0.00 0.00 2.73
275 276 1.349067 GATAGACCGGGCCAATACCT 58.651 55.000 1.76 0.00 0.00 3.08
276 277 2.532843 GATAGACCGGGCCAATACCTA 58.467 52.381 1.76 0.00 0.00 3.08
277 278 1.708341 TAGACCGGGCCAATACCTAC 58.292 55.000 1.76 0.00 0.00 3.18
278 279 1.068585 GACCGGGCCAATACCTACG 59.931 63.158 6.32 0.00 0.00 3.51
279 280 2.280592 CCGGGCCAATACCTACGC 60.281 66.667 4.39 0.00 0.00 4.42
280 281 2.502093 CGGGCCAATACCTACGCA 59.498 61.111 4.39 0.00 0.00 5.24
281 282 1.153329 CGGGCCAATACCTACGCAA 60.153 57.895 4.39 0.00 0.00 4.85
291 292 3.927555 CCTACGCAAGGGACTGAAA 57.072 52.632 0.00 0.00 42.32 2.69
292 293 1.726853 CCTACGCAAGGGACTGAAAG 58.273 55.000 0.00 0.00 42.32 2.62
293 294 1.079503 CTACGCAAGGGACTGAAAGC 58.920 55.000 0.00 0.00 40.86 3.51
294 295 0.685097 TACGCAAGGGACTGAAAGCT 59.315 50.000 0.00 0.00 40.86 3.74
295 296 0.179018 ACGCAAGGGACTGAAAGCTT 60.179 50.000 0.00 0.00 40.86 3.74
296 297 0.519077 CGCAAGGGACTGAAAGCTTC 59.481 55.000 0.00 0.00 40.86 3.86
297 298 0.519077 GCAAGGGACTGAAAGCTTCG 59.481 55.000 0.00 0.00 40.86 3.79
298 299 0.519077 CAAGGGACTGAAAGCTTCGC 59.481 55.000 0.00 0.00 40.86 4.70
299 300 0.606673 AAGGGACTGAAAGCTTCGCC 60.607 55.000 0.00 0.00 40.86 5.54
300 301 2.391389 GGGACTGAAAGCTTCGCCG 61.391 63.158 0.00 0.00 37.60 6.46
301 302 1.374252 GGACTGAAAGCTTCGCCGA 60.374 57.895 0.00 0.00 37.60 5.54
302 303 1.355066 GGACTGAAAGCTTCGCCGAG 61.355 60.000 0.00 0.00 37.60 4.63
303 304 1.355066 GACTGAAAGCTTCGCCGAGG 61.355 60.000 0.00 0.00 37.60 4.63
304 305 1.079819 CTGAAAGCTTCGCCGAGGA 60.080 57.895 0.00 0.00 0.00 3.71
305 306 1.079819 TGAAAGCTTCGCCGAGGAG 60.080 57.895 0.00 0.00 0.00 3.69
306 307 1.215647 GAAAGCTTCGCCGAGGAGA 59.784 57.895 0.00 0.00 0.00 3.71
307 308 0.804156 GAAAGCTTCGCCGAGGAGAG 60.804 60.000 0.00 0.00 0.00 3.20
308 309 2.844072 AAAGCTTCGCCGAGGAGAGC 62.844 60.000 0.00 0.00 0.00 4.09
309 310 4.135153 GCTTCGCCGAGGAGAGCA 62.135 66.667 0.00 0.00 0.00 4.26
310 311 2.811101 CTTCGCCGAGGAGAGCAT 59.189 61.111 0.00 0.00 0.00 3.79
311 312 1.591059 CTTCGCCGAGGAGAGCATG 60.591 63.158 0.00 0.00 0.00 4.06
312 313 3.723235 TTCGCCGAGGAGAGCATGC 62.723 63.158 10.51 10.51 0.00 4.06
313 314 4.519437 CGCCGAGGAGAGCATGCA 62.519 66.667 21.98 0.00 0.00 3.96
314 315 2.110627 GCCGAGGAGAGCATGCAT 59.889 61.111 21.98 7.95 0.00 3.96
315 316 1.960250 GCCGAGGAGAGCATGCATC 60.960 63.158 21.98 16.88 0.00 3.91
316 317 1.747145 CCGAGGAGAGCATGCATCT 59.253 57.895 21.98 18.69 0.00 2.90
317 318 0.319727 CCGAGGAGAGCATGCATCTC 60.320 60.000 26.20 26.20 42.08 2.75
318 319 0.663867 CGAGGAGAGCATGCATCTCG 60.664 60.000 26.63 25.98 43.45 4.04
319 320 0.388659 GAGGAGAGCATGCATCTCGT 59.611 55.000 27.32 27.32 43.45 4.18
320 321 0.829333 AGGAGAGCATGCATCTCGTT 59.171 50.000 26.63 19.57 43.45 3.85
321 322 2.034878 AGGAGAGCATGCATCTCGTTA 58.965 47.619 26.63 0.00 43.45 3.18
322 323 2.632028 AGGAGAGCATGCATCTCGTTAT 59.368 45.455 26.63 16.64 43.45 1.89
323 324 3.829026 AGGAGAGCATGCATCTCGTTATA 59.171 43.478 26.63 0.00 43.45 0.98
324 325 4.281941 AGGAGAGCATGCATCTCGTTATAA 59.718 41.667 26.63 0.00 43.45 0.98
325 326 4.624882 GGAGAGCATGCATCTCGTTATAAG 59.375 45.833 26.63 0.00 43.45 1.73
326 327 3.993081 AGAGCATGCATCTCGTTATAAGC 59.007 43.478 21.98 5.62 35.79 3.09
327 328 2.733552 AGCATGCATCTCGTTATAAGCG 59.266 45.455 21.98 0.00 0.00 4.68
328 329 2.731451 GCATGCATCTCGTTATAAGCGA 59.269 45.455 14.21 8.96 36.85 4.93
329 330 3.184379 GCATGCATCTCGTTATAAGCGAA 59.816 43.478 14.21 4.43 37.93 4.70
330 331 4.318760 GCATGCATCTCGTTATAAGCGAAA 60.319 41.667 14.21 0.64 37.93 3.46
331 332 5.615544 GCATGCATCTCGTTATAAGCGAAAT 60.616 40.000 14.21 2.53 37.93 2.17
332 333 6.401047 GCATGCATCTCGTTATAAGCGAAATA 60.401 38.462 14.21 2.55 37.93 1.40
333 334 7.674937 GCATGCATCTCGTTATAAGCGAAATAT 60.675 37.037 14.21 4.13 37.93 1.28
334 335 8.807581 CATGCATCTCGTTATAAGCGAAATATA 58.192 33.333 0.00 0.00 37.93 0.86
335 336 8.394667 TGCATCTCGTTATAAGCGAAATATAG 57.605 34.615 10.08 1.26 37.93 1.31
336 337 7.009265 TGCATCTCGTTATAAGCGAAATATAGC 59.991 37.037 10.08 9.06 37.93 2.97
337 338 7.515371 GCATCTCGTTATAAGCGAAATATAGCC 60.515 40.741 10.08 0.00 37.93 3.93
338 339 6.327934 TCTCGTTATAAGCGAAATATAGCCC 58.672 40.000 10.08 0.00 37.93 5.19
339 340 5.413499 TCGTTATAAGCGAAATATAGCCCC 58.587 41.667 7.42 0.00 35.28 5.80
340 341 4.569564 CGTTATAAGCGAAATATAGCCCCC 59.430 45.833 0.00 0.00 0.00 5.40
341 342 2.754946 TAAGCGAAATATAGCCCCCG 57.245 50.000 0.00 0.00 0.00 5.73
342 343 0.605589 AAGCGAAATATAGCCCCCGC 60.606 55.000 0.00 0.00 42.52 6.13
343 344 1.302192 GCGAAATATAGCCCCCGCA 60.302 57.895 0.00 0.00 41.89 5.69
344 345 1.574702 GCGAAATATAGCCCCCGCAC 61.575 60.000 0.00 0.00 41.89 5.34
345 346 1.289109 CGAAATATAGCCCCCGCACG 61.289 60.000 0.00 0.00 37.52 5.34
346 347 1.574702 GAAATATAGCCCCCGCACGC 61.575 60.000 0.00 0.00 37.52 5.34
347 348 2.052047 AAATATAGCCCCCGCACGCT 62.052 55.000 0.00 0.00 39.17 5.07
348 349 2.450479 AATATAGCCCCCGCACGCTC 62.450 60.000 0.00 0.00 36.53 5.03
360 361 3.832704 CACGCTCTGTGGTCCATAA 57.167 52.632 0.00 0.00 45.21 1.90
361 362 2.315925 CACGCTCTGTGGTCCATAAT 57.684 50.000 0.00 0.00 45.21 1.28
362 363 2.205074 CACGCTCTGTGGTCCATAATC 58.795 52.381 0.00 0.00 45.21 1.75
363 364 1.139058 ACGCTCTGTGGTCCATAATCC 59.861 52.381 0.00 0.00 0.00 3.01
364 365 1.414181 CGCTCTGTGGTCCATAATCCT 59.586 52.381 0.00 0.00 0.00 3.24
365 366 2.628178 CGCTCTGTGGTCCATAATCCTA 59.372 50.000 0.00 0.00 0.00 2.94
366 367 3.553096 CGCTCTGTGGTCCATAATCCTAC 60.553 52.174 0.00 0.00 0.00 3.18
367 368 3.388024 GCTCTGTGGTCCATAATCCTACA 59.612 47.826 0.00 0.00 0.00 2.74
368 369 4.141711 GCTCTGTGGTCCATAATCCTACAA 60.142 45.833 0.00 0.00 0.00 2.41
369 370 5.605534 CTCTGTGGTCCATAATCCTACAAG 58.394 45.833 0.00 0.00 0.00 3.16
370 371 5.030147 TCTGTGGTCCATAATCCTACAAGT 58.970 41.667 0.00 0.00 0.00 3.16
371 372 6.199376 TCTGTGGTCCATAATCCTACAAGTA 58.801 40.000 0.00 0.00 0.00 2.24
372 373 6.097839 TCTGTGGTCCATAATCCTACAAGTAC 59.902 42.308 0.00 0.00 0.00 2.73
373 374 5.129815 TGTGGTCCATAATCCTACAAGTACC 59.870 44.000 0.00 0.00 0.00 3.34
374 375 4.657039 TGGTCCATAATCCTACAAGTACCC 59.343 45.833 0.00 0.00 0.00 3.69
375 376 4.041321 GGTCCATAATCCTACAAGTACCCC 59.959 50.000 0.00 0.00 0.00 4.95
376 377 4.041321 GTCCATAATCCTACAAGTACCCCC 59.959 50.000 0.00 0.00 0.00 5.40
377 378 4.077626 TCCATAATCCTACAAGTACCCCCT 60.078 45.833 0.00 0.00 0.00 4.79
378 379 4.286291 CCATAATCCTACAAGTACCCCCTC 59.714 50.000 0.00 0.00 0.00 4.30
379 380 2.491312 ATCCTACAAGTACCCCCTCC 57.509 55.000 0.00 0.00 0.00 4.30
380 381 1.095130 TCCTACAAGTACCCCCTCCA 58.905 55.000 0.00 0.00 0.00 3.86
381 382 1.654997 TCCTACAAGTACCCCCTCCAT 59.345 52.381 0.00 0.00 0.00 3.41
382 383 2.046729 TCCTACAAGTACCCCCTCCATT 59.953 50.000 0.00 0.00 0.00 3.16
383 384 3.275497 TCCTACAAGTACCCCCTCCATTA 59.725 47.826 0.00 0.00 0.00 1.90
384 385 3.390311 CCTACAAGTACCCCCTCCATTAC 59.610 52.174 0.00 0.00 0.00 1.89
385 386 2.923908 ACAAGTACCCCCTCCATTACA 58.076 47.619 0.00 0.00 0.00 2.41
386 387 3.470868 ACAAGTACCCCCTCCATTACAT 58.529 45.455 0.00 0.00 0.00 2.29
387 388 4.637600 ACAAGTACCCCCTCCATTACATA 58.362 43.478 0.00 0.00 0.00 2.29
388 389 5.041015 ACAAGTACCCCCTCCATTACATAA 58.959 41.667 0.00 0.00 0.00 1.90
389 390 5.674958 ACAAGTACCCCCTCCATTACATAAT 59.325 40.000 0.00 0.00 0.00 1.28
390 391 5.843019 AGTACCCCCTCCATTACATAATG 57.157 43.478 4.87 4.87 42.00 1.90
391 392 5.232347 AGTACCCCCTCCATTACATAATGT 58.768 41.667 10.06 0.00 41.04 2.71
392 393 6.395598 AGTACCCCCTCCATTACATAATGTA 58.604 40.000 10.06 0.00 41.04 2.29
393 394 5.843019 ACCCCCTCCATTACATAATGTAG 57.157 43.478 10.06 4.51 41.04 2.74
394 395 5.232347 ACCCCCTCCATTACATAATGTAGT 58.768 41.667 10.06 0.00 41.04 2.73
395 396 5.073144 ACCCCCTCCATTACATAATGTAGTG 59.927 44.000 10.06 3.31 41.04 2.74
396 397 5.003804 CCCCTCCATTACATAATGTAGTGC 58.996 45.833 10.06 0.00 38.67 4.40
397 398 4.690748 CCCTCCATTACATAATGTAGTGCG 59.309 45.833 10.06 0.00 38.67 5.34
398 399 5.297547 CCTCCATTACATAATGTAGTGCGT 58.702 41.667 10.06 0.00 38.67 5.24
399 400 6.452242 CCTCCATTACATAATGTAGTGCGTA 58.548 40.000 10.06 0.00 38.67 4.42
400 401 7.097192 CCTCCATTACATAATGTAGTGCGTAT 58.903 38.462 10.06 0.00 38.67 3.06
401 402 8.248253 CCTCCATTACATAATGTAGTGCGTATA 58.752 37.037 10.06 0.00 38.67 1.47
402 403 9.290483 CTCCATTACATAATGTAGTGCGTATAG 57.710 37.037 10.06 0.00 38.67 1.31
403 404 8.799367 TCCATTACATAATGTAGTGCGTATAGT 58.201 33.333 10.06 0.00 38.67 2.12
404 405 9.419297 CCATTACATAATGTAGTGCGTATAGTT 57.581 33.333 10.06 0.00 38.67 2.24
438 439 8.785329 AGTAAACCTTTTGAAAATTTTGAGCA 57.215 26.923 8.47 0.00 0.00 4.26
439 440 9.225436 AGTAAACCTTTTGAAAATTTTGAGCAA 57.775 25.926 8.47 3.86 0.00 3.91
440 441 9.489393 GTAAACCTTTTGAAAATTTTGAGCAAG 57.511 29.630 8.47 6.33 0.00 4.01
441 442 7.686438 AACCTTTTGAAAATTTTGAGCAAGT 57.314 28.000 8.47 0.00 0.00 3.16
442 443 7.686438 ACCTTTTGAAAATTTTGAGCAAGTT 57.314 28.000 8.47 0.00 0.00 2.66
443 444 8.109705 ACCTTTTGAAAATTTTGAGCAAGTTT 57.890 26.923 8.47 0.00 0.00 2.66
444 445 9.225436 ACCTTTTGAAAATTTTGAGCAAGTTTA 57.775 25.926 8.47 0.00 0.00 2.01
491 492 8.862325 ACATTACCAAGTACATGAAAGATGAA 57.138 30.769 0.00 0.00 0.00 2.57
492 493 8.730680 ACATTACCAAGTACATGAAAGATGAAC 58.269 33.333 0.00 0.00 0.00 3.18
541 542 6.362551 CGTCTTACGGTGAATCTAATGGTATG 59.637 42.308 0.00 0.00 38.08 2.39
553 554 9.722056 GAATCTAATGGTATGTGTTTGACATTC 57.278 33.333 0.00 0.00 43.20 2.67
586 587 9.919348 CAAATATTTTTCTTCACAAACTTGGTG 57.081 29.630 0.00 0.00 37.60 4.17
607 608 5.989168 GGTGAAAATTTCCGAGGTTTGAATT 59.011 36.000 3.00 0.00 0.00 2.17
610 611 8.061857 GTGAAAATTTCCGAGGTTTGAATTTTC 58.938 33.333 22.48 22.48 33.92 2.29
681 698 5.119434 GCTTTGAAGAAGACTAAACCTCGAG 59.881 44.000 5.13 5.13 0.00 4.04
692 725 1.367840 ACCTCGAGTGGTTGACAGC 59.632 57.895 12.31 0.00 36.89 4.40
695 728 2.661537 CGAGTGGTTGACAGCGCA 60.662 61.111 11.47 0.00 33.04 6.09
707 740 1.206578 CAGCGCAGTAAACAACCCG 59.793 57.895 11.47 0.00 0.00 5.28
709 742 1.205820 GCGCAGTAAACAACCCGTC 59.794 57.895 0.30 0.00 0.00 4.79
735 768 7.686438 AAAAAGAAAAGAAAAATGGCAGTGT 57.314 28.000 0.00 0.00 0.00 3.55
774 807 2.550855 GCTGATTGTCTCACCAACCTCA 60.551 50.000 0.00 0.00 0.00 3.86
787 820 2.485479 CCAACCTCAGTACACAGCAACT 60.485 50.000 0.00 0.00 0.00 3.16
788 821 3.206150 CAACCTCAGTACACAGCAACTT 58.794 45.455 0.00 0.00 0.00 2.66
789 822 2.838736 ACCTCAGTACACAGCAACTTG 58.161 47.619 0.00 0.00 0.00 3.16
790 823 2.170607 ACCTCAGTACACAGCAACTTGT 59.829 45.455 0.00 0.00 0.00 3.16
791 824 3.206150 CCTCAGTACACAGCAACTTGTT 58.794 45.455 0.00 0.00 0.00 2.83
792 825 3.248602 CCTCAGTACACAGCAACTTGTTC 59.751 47.826 0.00 0.00 0.00 3.18
793 826 2.863740 TCAGTACACAGCAACTTGTTCG 59.136 45.455 0.00 0.00 0.00 3.95
794 827 2.607635 CAGTACACAGCAACTTGTTCGT 59.392 45.455 0.00 0.00 0.00 3.85
795 828 3.063452 CAGTACACAGCAACTTGTTCGTT 59.937 43.478 0.00 0.00 0.00 3.85
796 829 2.542766 ACACAGCAACTTGTTCGTTG 57.457 45.000 0.00 0.00 45.35 4.10
801 834 3.437845 CAACTTGTTCGTTGCTCCG 57.562 52.632 0.00 0.00 37.98 4.63
802 835 0.655733 CAACTTGTTCGTTGCTCCGT 59.344 50.000 0.00 0.00 37.98 4.69
803 836 0.655733 AACTTGTTCGTTGCTCCGTG 59.344 50.000 0.00 0.00 0.00 4.94
804 837 1.082756 CTTGTTCGTTGCTCCGTGC 60.083 57.895 0.00 0.00 43.25 5.34
805 838 2.443957 CTTGTTCGTTGCTCCGTGCC 62.444 60.000 0.00 0.00 42.00 5.01
806 839 4.072088 GTTCGTTGCTCCGTGCCG 62.072 66.667 0.00 0.00 42.00 5.69
821 854 2.818274 CCGCCAGTTCGGGTAAGC 60.818 66.667 0.00 0.00 45.38 3.09
916 949 2.417516 CTACATCTCCACGGCCGG 59.582 66.667 31.76 18.27 0.00 6.13
932 965 1.837051 CGGCCCCCTGCAGTAGATA 60.837 63.158 13.81 0.00 43.89 1.98
933 966 1.821061 CGGCCCCCTGCAGTAGATAG 61.821 65.000 13.81 0.00 43.89 2.08
934 967 0.471971 GGCCCCCTGCAGTAGATAGA 60.472 60.000 13.81 0.00 43.89 1.98
935 968 1.650528 GCCCCCTGCAGTAGATAGAT 58.349 55.000 13.81 0.00 40.77 1.98
942 975 1.613925 TGCAGTAGATAGATCCCGCAC 59.386 52.381 0.00 0.00 0.00 5.34
1401 1434 0.249398 ATCCTCCGGTTTTGACCTCG 59.751 55.000 0.00 0.00 0.00 4.63
2170 2228 5.070770 TGAGCTTTTCAGAGAGAGCTAAG 57.929 43.478 4.72 0.00 44.88 2.18
2171 2229 3.860641 AGCTTTTCAGAGAGAGCTAAGC 58.139 45.455 4.29 4.29 43.21 3.09
2172 2230 3.515104 AGCTTTTCAGAGAGAGCTAAGCT 59.485 43.478 8.43 8.43 43.21 3.74
2173 2231 4.020307 AGCTTTTCAGAGAGAGCTAAGCTT 60.020 41.667 3.48 3.48 43.21 3.74
2174 2232 4.329801 GCTTTTCAGAGAGAGCTAAGCTTC 59.670 45.833 0.00 0.00 39.88 3.86
2175 2233 5.474578 TTTTCAGAGAGAGCTAAGCTTCA 57.525 39.130 0.00 0.00 39.88 3.02
2176 2234 4.717233 TTCAGAGAGAGCTAAGCTTCAG 57.283 45.455 0.00 0.09 39.88 3.02
2177 2235 3.696045 TCAGAGAGAGCTAAGCTTCAGT 58.304 45.455 0.00 0.00 39.88 3.41
2178 2236 3.694072 TCAGAGAGAGCTAAGCTTCAGTC 59.306 47.826 0.00 0.00 39.88 3.51
2179 2237 2.682856 AGAGAGAGCTAAGCTTCAGTCG 59.317 50.000 0.00 0.00 39.88 4.18
2180 2238 2.680841 GAGAGAGCTAAGCTTCAGTCGA 59.319 50.000 0.00 0.00 39.88 4.20
2181 2239 3.287222 AGAGAGCTAAGCTTCAGTCGAT 58.713 45.455 0.00 0.00 39.88 3.59
2182 2240 3.699038 AGAGAGCTAAGCTTCAGTCGATT 59.301 43.478 0.00 0.00 39.88 3.34
2183 2241 4.884744 AGAGAGCTAAGCTTCAGTCGATTA 59.115 41.667 0.00 0.00 39.88 1.75
2184 2242 5.534654 AGAGAGCTAAGCTTCAGTCGATTAT 59.465 40.000 0.00 0.00 39.88 1.28
2185 2243 6.040391 AGAGAGCTAAGCTTCAGTCGATTATT 59.960 38.462 0.00 0.00 39.88 1.40
2186 2244 5.982516 AGAGCTAAGCTTCAGTCGATTATTG 59.017 40.000 0.00 0.00 39.88 1.90
2187 2245 5.907207 AGCTAAGCTTCAGTCGATTATTGA 58.093 37.500 0.00 0.00 33.89 2.57
2188 2246 5.751028 AGCTAAGCTTCAGTCGATTATTGAC 59.249 40.000 0.00 4.47 33.89 3.18
2189 2247 5.331905 GCTAAGCTTCAGTCGATTATTGACG 60.332 44.000 0.00 3.24 41.24 4.35
2190 2248 4.111375 AGCTTCAGTCGATTATTGACGT 57.889 40.909 6.92 0.00 41.24 4.34
2191 2249 4.106197 AGCTTCAGTCGATTATTGACGTC 58.894 43.478 9.11 9.11 41.24 4.34
2192 2250 3.061797 GCTTCAGTCGATTATTGACGTCG 60.062 47.826 11.62 0.00 41.24 5.12
2193 2251 4.340263 CTTCAGTCGATTATTGACGTCGA 58.660 43.478 8.21 8.21 41.24 4.20
2194 2252 3.936661 TCAGTCGATTATTGACGTCGAG 58.063 45.455 11.90 0.00 44.01 4.04
2195 2253 3.619929 TCAGTCGATTATTGACGTCGAGA 59.380 43.478 11.90 3.43 44.01 4.04
2196 2254 3.963102 CAGTCGATTATTGACGTCGAGAG 59.037 47.826 11.90 1.12 44.01 3.20
2197 2255 3.622163 AGTCGATTATTGACGTCGAGAGT 59.378 43.478 11.90 3.09 44.01 3.24
2198 2256 3.719840 GTCGATTATTGACGTCGAGAGTG 59.280 47.826 11.90 0.95 44.01 3.51
2199 2257 3.373130 TCGATTATTGACGTCGAGAGTGT 59.627 43.478 11.90 0.00 39.22 3.55
2200 2258 4.567959 TCGATTATTGACGTCGAGAGTGTA 59.432 41.667 11.90 0.00 39.22 2.90
2201 2259 5.063817 TCGATTATTGACGTCGAGAGTGTAA 59.936 40.000 11.90 5.07 39.22 2.41
2202 2260 5.169208 CGATTATTGACGTCGAGAGTGTAAC 59.831 44.000 11.90 0.35 37.55 2.50
2203 2261 6.942785 CGATTATTGACGTCGAGAGTGTAACT 60.943 42.308 11.90 0.00 43.99 2.24
2227 2285 5.070770 TGAGCTTTTCAGAGAGAGCTAAG 57.929 43.478 4.72 0.00 44.88 2.18
2228 2286 3.860641 AGCTTTTCAGAGAGAGCTAAGC 58.139 45.455 4.29 4.29 43.21 3.09
2229 2287 3.515104 AGCTTTTCAGAGAGAGCTAAGCT 59.485 43.478 8.43 8.43 43.21 3.74
2230 2288 4.020307 AGCTTTTCAGAGAGAGCTAAGCTT 60.020 41.667 3.48 3.48 43.21 3.74
2231 2289 4.329801 GCTTTTCAGAGAGAGCTAAGCTTC 59.670 45.833 0.00 0.00 39.88 3.86
2232 2290 5.474578 TTTTCAGAGAGAGCTAAGCTTCA 57.525 39.130 0.00 0.00 39.88 3.02
2233 2291 4.717233 TTCAGAGAGAGCTAAGCTTCAG 57.283 45.455 0.00 0.09 39.88 3.02
2234 2292 3.696045 TCAGAGAGAGCTAAGCTTCAGT 58.304 45.455 0.00 0.00 39.88 3.41
2235 2293 3.694072 TCAGAGAGAGCTAAGCTTCAGTC 59.306 47.826 0.00 0.00 39.88 3.51
2236 2294 2.682856 AGAGAGAGCTAAGCTTCAGTCG 59.317 50.000 0.00 0.00 39.88 4.18
2237 2295 2.680841 GAGAGAGCTAAGCTTCAGTCGA 59.319 50.000 0.00 0.00 39.88 4.20
2238 2296 3.287222 AGAGAGCTAAGCTTCAGTCGAT 58.713 45.455 0.00 0.00 39.88 3.59
2239 2297 3.699038 AGAGAGCTAAGCTTCAGTCGATT 59.301 43.478 0.00 0.00 39.88 3.34
2240 2298 4.884744 AGAGAGCTAAGCTTCAGTCGATTA 59.115 41.667 0.00 0.00 39.88 1.75
2241 2299 5.534654 AGAGAGCTAAGCTTCAGTCGATTAT 59.465 40.000 0.00 0.00 39.88 1.28
2242 2300 6.040391 AGAGAGCTAAGCTTCAGTCGATTATT 59.960 38.462 0.00 0.00 39.88 1.40
2243 2301 5.982516 AGAGCTAAGCTTCAGTCGATTATTG 59.017 40.000 0.00 0.00 39.88 1.90
2244 2302 5.907207 AGCTAAGCTTCAGTCGATTATTGA 58.093 37.500 0.00 0.00 33.89 2.57
2245 2303 5.751028 AGCTAAGCTTCAGTCGATTATTGAC 59.249 40.000 0.00 4.47 33.89 3.18
2246 2304 5.331905 GCTAAGCTTCAGTCGATTATTGACG 60.332 44.000 0.00 3.24 41.24 4.35
2247 2305 4.111375 AGCTTCAGTCGATTATTGACGT 57.889 40.909 6.92 0.00 41.24 4.34
2248 2306 4.106197 AGCTTCAGTCGATTATTGACGTC 58.894 43.478 9.11 9.11 41.24 4.34
2249 2307 3.061797 GCTTCAGTCGATTATTGACGTCG 60.062 47.826 11.62 0.00 41.24 5.12
2250 2308 4.340263 CTTCAGTCGATTATTGACGTCGA 58.660 43.478 8.21 8.21 41.24 4.20
2251 2309 3.936661 TCAGTCGATTATTGACGTCGAG 58.063 45.455 11.90 0.00 44.01 4.04
2252 2310 3.619929 TCAGTCGATTATTGACGTCGAGA 59.380 43.478 11.90 3.43 44.01 4.04
2253 2311 3.963102 CAGTCGATTATTGACGTCGAGAG 59.037 47.826 11.90 1.12 44.01 3.20
2254 2312 3.622163 AGTCGATTATTGACGTCGAGAGT 59.378 43.478 11.90 3.09 44.01 3.24
2255 2313 3.719840 GTCGATTATTGACGTCGAGAGTG 59.280 47.826 11.90 0.95 44.01 3.51
2256 2314 3.373130 TCGATTATTGACGTCGAGAGTGT 59.627 43.478 11.90 0.00 39.22 3.55
2257 2315 4.567959 TCGATTATTGACGTCGAGAGTGTA 59.432 41.667 11.90 0.00 39.22 2.90
2258 2316 5.063817 TCGATTATTGACGTCGAGAGTGTAA 59.936 40.000 11.90 5.07 39.22 2.41
2259 2317 5.169208 CGATTATTGACGTCGAGAGTGTAAC 59.831 44.000 11.90 0.35 37.55 2.50
2260 2318 6.942785 CGATTATTGACGTCGAGAGTGTAACT 60.943 42.308 11.90 0.00 43.99 2.24
2339 2397 2.788786 GGCTGTGAATTGTCGTTGTTTG 59.211 45.455 0.00 0.00 0.00 2.93
2355 2413 6.304445 TCGTTGTTTGCATCGATCAATAAAAC 59.696 34.615 0.00 3.30 40.54 2.43
2407 2489 2.789409 AGTGCAAACTATGGTCTCCC 57.211 50.000 0.00 0.00 0.00 4.30
2410 2492 1.992557 TGCAAACTATGGTCTCCCCTT 59.007 47.619 0.00 0.00 0.00 3.95
2411 2493 2.026262 TGCAAACTATGGTCTCCCCTTC 60.026 50.000 0.00 0.00 0.00 3.46
2412 2494 2.684038 GCAAACTATGGTCTCCCCTTCC 60.684 54.545 0.00 0.00 0.00 3.46
2413 2495 1.894699 AACTATGGTCTCCCCTTCCC 58.105 55.000 0.00 0.00 0.00 3.97
2414 2496 0.029989 ACTATGGTCTCCCCTTCCCC 60.030 60.000 0.00 0.00 0.00 4.81
2415 2497 1.074775 TATGGTCTCCCCTTCCCCG 60.075 63.158 0.00 0.00 0.00 5.73
2418 2500 3.327404 GTCTCCCCTTCCCCGCAA 61.327 66.667 0.00 0.00 0.00 4.85
2419 2501 3.009115 TCTCCCCTTCCCCGCAAG 61.009 66.667 0.00 0.00 0.00 4.01
2431 2513 3.659092 CGCAAGGCCGCAACTCAA 61.659 61.111 0.00 0.00 0.00 3.02
2442 2524 0.169009 GCAACTCAAGACGGCAATCC 59.831 55.000 0.00 0.00 0.00 3.01
2525 2609 3.106827 AGCCCACCATATTTTTGAAGGG 58.893 45.455 0.00 0.00 35.09 3.95
2543 2634 4.632037 TGCACGCAAGCAAATCAC 57.368 50.000 0.00 0.00 42.46 3.06
2560 2651 7.984002 CAAATCACCGTTATTTGCAATCATA 57.016 32.000 0.00 0.00 37.47 2.15
2565 2656 7.416817 TCACCGTTATTTGCAATCATATGAAG 58.583 34.615 9.99 6.83 0.00 3.02
2566 2657 7.066887 TCACCGTTATTTGCAATCATATGAAGT 59.933 33.333 9.99 0.00 0.00 3.01
2567 2658 7.166307 CACCGTTATTTGCAATCATATGAAGTG 59.834 37.037 9.99 11.88 0.00 3.16
2568 2659 7.148086 ACCGTTATTTGCAATCATATGAAGTGT 60.148 33.333 9.99 0.00 0.00 3.55
2569 2660 7.701924 CCGTTATTTGCAATCATATGAAGTGTT 59.298 33.333 9.99 0.00 0.00 3.32
2570 2661 8.525876 CGTTATTTGCAATCATATGAAGTGTTG 58.474 33.333 9.99 10.59 0.00 3.33
2571 2662 9.571810 GTTATTTGCAATCATATGAAGTGTTGA 57.428 29.630 17.16 7.05 0.00 3.18
2572 2663 9.571810 TTATTTGCAATCATATGAAGTGTTGAC 57.428 29.630 17.16 10.60 0.00 3.18
2627 2719 6.065976 TCCTCAAATTGCTCCAGATTAAGA 57.934 37.500 0.00 0.00 0.00 2.10
2731 2825 1.561769 AAGCCGGGATGTCACATCCA 61.562 55.000 33.43 0.00 39.93 3.41
2736 2830 1.408683 CGGGATGTCACATCCACCATT 60.409 52.381 33.43 0.00 39.93 3.16
2833 2927 2.426842 ATTTACCTCCAGGCAAGCTC 57.573 50.000 0.00 0.00 39.32 4.09
2835 2929 0.547712 TTACCTCCAGGCAAGCTCCT 60.548 55.000 0.00 0.00 39.32 3.69
2891 2985 0.175989 GGCCGGACTACTGGAAGAAG 59.824 60.000 5.05 0.00 44.87 2.85
2892 2986 0.896226 GCCGGACTACTGGAAGAAGT 59.104 55.000 5.05 0.00 44.87 3.01
2913 3007 2.620112 GCAAAGCTGCGAGGAAGCA 61.620 57.895 0.00 0.00 45.96 3.91
2921 3015 2.476320 GCGAGGAAGCATGGGAAGC 61.476 63.158 0.00 0.00 37.05 3.86
2936 3030 2.765250 GAAGCCCAGCGACGTCTCAA 62.765 60.000 14.70 0.00 0.00 3.02
2937 3031 2.125512 GCCCAGCGACGTCTCAAT 60.126 61.111 14.70 0.00 0.00 2.57
2943 3037 1.374252 GCGACGTCTCAATGGTGGT 60.374 57.895 14.70 0.00 0.00 4.16
2946 3040 1.604438 CGACGTCTCAATGGTGGTGAA 60.604 52.381 14.70 0.00 0.00 3.18
2952 3046 1.005805 CTCAATGGTGGTGAATGGGGA 59.994 52.381 0.00 0.00 0.00 4.81
2953 3047 1.645391 TCAATGGTGGTGAATGGGGAT 59.355 47.619 0.00 0.00 0.00 3.85
2993 3087 3.009723 CGATAGACTGGCACCAAACAAT 58.990 45.455 0.00 0.00 39.76 2.71
2994 3088 3.063997 CGATAGACTGGCACCAAACAATC 59.936 47.826 0.00 0.00 39.76 2.67
2995 3089 2.363306 AGACTGGCACCAAACAATCA 57.637 45.000 0.00 0.00 0.00 2.57
3019 3113 4.489771 GGGGATGTGGGCGGTGAG 62.490 72.222 0.00 0.00 0.00 3.51
3021 3115 3.399181 GGATGTGGGCGGTGAGGA 61.399 66.667 0.00 0.00 0.00 3.71
3030 3124 2.269241 CGGTGAGGAAAGGGAGCC 59.731 66.667 0.00 0.00 0.00 4.70
3034 3128 1.463214 TGAGGAAAGGGAGCCCACA 60.463 57.895 8.53 0.00 38.92 4.17
3077 3172 2.107950 TTTTAGGTGGATGGAGTGCG 57.892 50.000 0.00 0.00 0.00 5.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 8.590719 TTTCTTCGTTTTACTTTGTGGTTTTT 57.409 26.923 0.00 0.00 0.00 1.94
5 6 8.489559 GTTTTCTTCGTTTTACTTTGTGGTTTT 58.510 29.630 0.00 0.00 0.00 2.43
6 7 7.652507 TGTTTTCTTCGTTTTACTTTGTGGTTT 59.347 29.630 0.00 0.00 0.00 3.27
7 8 7.146648 TGTTTTCTTCGTTTTACTTTGTGGTT 58.853 30.769 0.00 0.00 0.00 3.67
8 9 6.679843 TGTTTTCTTCGTTTTACTTTGTGGT 58.320 32.000 0.00 0.00 0.00 4.16
9 10 7.024768 TCTGTTTTCTTCGTTTTACTTTGTGG 58.975 34.615 0.00 0.00 0.00 4.17
10 11 8.523464 CATCTGTTTTCTTCGTTTTACTTTGTG 58.477 33.333 0.00 0.00 0.00 3.33
11 12 8.455682 TCATCTGTTTTCTTCGTTTTACTTTGT 58.544 29.630 0.00 0.00 0.00 2.83
12 13 8.835467 TCATCTGTTTTCTTCGTTTTACTTTG 57.165 30.769 0.00 0.00 0.00 2.77
16 17 9.326339 GGTTATCATCTGTTTTCTTCGTTTTAC 57.674 33.333 0.00 0.00 0.00 2.01
17 18 8.225107 CGGTTATCATCTGTTTTCTTCGTTTTA 58.775 33.333 0.00 0.00 0.00 1.52
18 19 7.041644 TCGGTTATCATCTGTTTTCTTCGTTTT 60.042 33.333 0.00 0.00 0.00 2.43
19 20 6.425721 TCGGTTATCATCTGTTTTCTTCGTTT 59.574 34.615 0.00 0.00 0.00 3.60
20 21 5.929992 TCGGTTATCATCTGTTTTCTTCGTT 59.070 36.000 0.00 0.00 0.00 3.85
21 22 5.475719 TCGGTTATCATCTGTTTTCTTCGT 58.524 37.500 0.00 0.00 0.00 3.85
22 23 5.805486 TCTCGGTTATCATCTGTTTTCTTCG 59.195 40.000 0.00 0.00 0.00 3.79
23 24 7.596749 TTCTCGGTTATCATCTGTTTTCTTC 57.403 36.000 0.00 0.00 0.00 2.87
24 25 7.878127 TCTTTCTCGGTTATCATCTGTTTTCTT 59.122 33.333 0.00 0.00 0.00 2.52
25 26 7.386851 TCTTTCTCGGTTATCATCTGTTTTCT 58.613 34.615 0.00 0.00 0.00 2.52
26 27 7.596749 TCTTTCTCGGTTATCATCTGTTTTC 57.403 36.000 0.00 0.00 0.00 2.29
27 28 7.979444 TTCTTTCTCGGTTATCATCTGTTTT 57.021 32.000 0.00 0.00 0.00 2.43
28 29 7.444183 TGTTTCTTTCTCGGTTATCATCTGTTT 59.556 33.333 0.00 0.00 0.00 2.83
29 30 6.934645 TGTTTCTTTCTCGGTTATCATCTGTT 59.065 34.615 0.00 0.00 0.00 3.16
30 31 6.464222 TGTTTCTTTCTCGGTTATCATCTGT 58.536 36.000 0.00 0.00 0.00 3.41
31 32 6.968131 TGTTTCTTTCTCGGTTATCATCTG 57.032 37.500 0.00 0.00 0.00 2.90
32 33 7.878127 TCTTTGTTTCTTTCTCGGTTATCATCT 59.122 33.333 0.00 0.00 0.00 2.90
33 34 8.029642 TCTTTGTTTCTTTCTCGGTTATCATC 57.970 34.615 0.00 0.00 0.00 2.92
34 35 7.979444 TCTTTGTTTCTTTCTCGGTTATCAT 57.021 32.000 0.00 0.00 0.00 2.45
35 36 7.795482 TTCTTTGTTTCTTTCTCGGTTATCA 57.205 32.000 0.00 0.00 0.00 2.15
36 37 7.323895 GCTTTCTTTGTTTCTTTCTCGGTTATC 59.676 37.037 0.00 0.00 0.00 1.75
37 38 7.139392 GCTTTCTTTGTTTCTTTCTCGGTTAT 58.861 34.615 0.00 0.00 0.00 1.89
38 39 6.459161 GGCTTTCTTTGTTTCTTTCTCGGTTA 60.459 38.462 0.00 0.00 0.00 2.85
39 40 5.340803 GCTTTCTTTGTTTCTTTCTCGGTT 58.659 37.500 0.00 0.00 0.00 4.44
40 41 4.202020 GGCTTTCTTTGTTTCTTTCTCGGT 60.202 41.667 0.00 0.00 0.00 4.69
41 42 4.202010 TGGCTTTCTTTGTTTCTTTCTCGG 60.202 41.667 0.00 0.00 0.00 4.63
42 43 4.920376 TGGCTTTCTTTGTTTCTTTCTCG 58.080 39.130 0.00 0.00 0.00 4.04
43 44 7.595311 TTTTGGCTTTCTTTGTTTCTTTCTC 57.405 32.000 0.00 0.00 0.00 2.87
44 45 7.977789 TTTTTGGCTTTCTTTGTTTCTTTCT 57.022 28.000 0.00 0.00 0.00 2.52
75 76 5.486419 TCTTACTAGTTCCCCTCGGATTTTT 59.514 40.000 0.00 0.00 38.24 1.94
76 77 5.028131 TCTTACTAGTTCCCCTCGGATTTT 58.972 41.667 0.00 0.00 38.24 1.82
77 78 4.617593 TCTTACTAGTTCCCCTCGGATTT 58.382 43.478 0.00 0.00 38.24 2.17
78 79 4.261411 TCTTACTAGTTCCCCTCGGATT 57.739 45.455 0.00 0.00 38.24 3.01
79 80 3.967467 TCTTACTAGTTCCCCTCGGAT 57.033 47.619 0.00 0.00 38.24 4.18
80 81 3.744940 TTCTTACTAGTTCCCCTCGGA 57.255 47.619 0.00 0.00 35.88 4.55
81 82 4.222366 ACTTTTCTTACTAGTTCCCCTCGG 59.778 45.833 0.00 0.00 0.00 4.63
82 83 5.047519 TCACTTTTCTTACTAGTTCCCCTCG 60.048 44.000 0.00 0.00 0.00 4.63
83 84 6.356186 TCACTTTTCTTACTAGTTCCCCTC 57.644 41.667 0.00 0.00 0.00 4.30
84 85 6.758806 TTCACTTTTCTTACTAGTTCCCCT 57.241 37.500 0.00 0.00 0.00 4.79
85 86 7.519488 CGTTTTCACTTTTCTTACTAGTTCCCC 60.519 40.741 0.00 0.00 0.00 4.81
86 87 7.225341 TCGTTTTCACTTTTCTTACTAGTTCCC 59.775 37.037 0.00 0.00 0.00 3.97
87 88 8.134905 TCGTTTTCACTTTTCTTACTAGTTCC 57.865 34.615 0.00 0.00 0.00 3.62
88 89 9.028185 TCTCGTTTTCACTTTTCTTACTAGTTC 57.972 33.333 0.00 0.00 0.00 3.01
89 90 8.937634 TCTCGTTTTCACTTTTCTTACTAGTT 57.062 30.769 0.00 0.00 0.00 2.24
90 91 8.937634 TTCTCGTTTTCACTTTTCTTACTAGT 57.062 30.769 0.00 0.00 0.00 2.57
91 92 8.488764 CCTTCTCGTTTTCACTTTTCTTACTAG 58.511 37.037 0.00 0.00 0.00 2.57
92 93 8.199449 TCCTTCTCGTTTTCACTTTTCTTACTA 58.801 33.333 0.00 0.00 0.00 1.82
93 94 7.046033 TCCTTCTCGTTTTCACTTTTCTTACT 58.954 34.615 0.00 0.00 0.00 2.24
94 95 7.242914 TCCTTCTCGTTTTCACTTTTCTTAC 57.757 36.000 0.00 0.00 0.00 2.34
95 96 7.852971 TTCCTTCTCGTTTTCACTTTTCTTA 57.147 32.000 0.00 0.00 0.00 2.10
96 97 6.753107 TTCCTTCTCGTTTTCACTTTTCTT 57.247 33.333 0.00 0.00 0.00 2.52
97 98 6.150474 TGTTTCCTTCTCGTTTTCACTTTTCT 59.850 34.615 0.00 0.00 0.00 2.52
98 99 6.319399 TGTTTCCTTCTCGTTTTCACTTTTC 58.681 36.000 0.00 0.00 0.00 2.29
99 100 6.262193 TGTTTCCTTCTCGTTTTCACTTTT 57.738 33.333 0.00 0.00 0.00 2.27
100 101 5.890424 TGTTTCCTTCTCGTTTTCACTTT 57.110 34.783 0.00 0.00 0.00 2.66
101 102 5.890424 TTGTTTCCTTCTCGTTTTCACTT 57.110 34.783 0.00 0.00 0.00 3.16
102 103 5.646360 TCTTTGTTTCCTTCTCGTTTTCACT 59.354 36.000 0.00 0.00 0.00 3.41
103 104 5.875930 TCTTTGTTTCCTTCTCGTTTTCAC 58.124 37.500 0.00 0.00 0.00 3.18
104 105 6.503589 TTCTTTGTTTCCTTCTCGTTTTCA 57.496 33.333 0.00 0.00 0.00 2.69
105 106 7.806149 TTTTCTTTGTTTCCTTCTCGTTTTC 57.194 32.000 0.00 0.00 0.00 2.29
146 147 8.966069 TTTCGGTTTTCCATTCCTTTATTTTT 57.034 26.923 0.00 0.00 40.70 1.94
147 148 8.966069 TTTTCGGTTTTCCATTCCTTTATTTT 57.034 26.923 0.00 0.00 40.70 1.82
148 149 8.832521 GTTTTTCGGTTTTCCATTCCTTTATTT 58.167 29.630 0.00 0.00 40.70 1.40
149 150 7.442969 GGTTTTTCGGTTTTCCATTCCTTTATT 59.557 33.333 0.00 0.00 40.70 1.40
150 151 6.932400 GGTTTTTCGGTTTTCCATTCCTTTAT 59.068 34.615 0.00 0.00 40.70 1.40
151 152 6.282167 GGTTTTTCGGTTTTCCATTCCTTTA 58.718 36.000 0.00 0.00 40.70 1.85
152 153 5.120399 GGTTTTTCGGTTTTCCATTCCTTT 58.880 37.500 0.00 0.00 40.70 3.11
153 154 4.443739 GGGTTTTTCGGTTTTCCATTCCTT 60.444 41.667 0.00 0.00 40.70 3.36
154 155 3.070446 GGGTTTTTCGGTTTTCCATTCCT 59.930 43.478 0.00 0.00 40.70 3.36
155 156 3.181464 TGGGTTTTTCGGTTTTCCATTCC 60.181 43.478 0.00 0.00 40.70 3.01
156 157 4.061357 TGGGTTTTTCGGTTTTCCATTC 57.939 40.909 0.00 0.00 40.70 2.67
157 158 4.698201 ATGGGTTTTTCGGTTTTCCATT 57.302 36.364 0.00 0.00 40.70 3.16
158 159 5.081032 TCTATGGGTTTTTCGGTTTTCCAT 58.919 37.500 0.00 0.00 40.70 3.41
159 160 4.471548 TCTATGGGTTTTTCGGTTTTCCA 58.528 39.130 0.00 0.00 40.70 3.53
160 161 5.456548 TTCTATGGGTTTTTCGGTTTTCC 57.543 39.130 0.00 0.00 0.00 3.13
161 162 6.073980 GCTTTTCTATGGGTTTTTCGGTTTTC 60.074 38.462 0.00 0.00 0.00 2.29
162 163 5.756347 GCTTTTCTATGGGTTTTTCGGTTTT 59.244 36.000 0.00 0.00 0.00 2.43
163 164 5.163395 TGCTTTTCTATGGGTTTTTCGGTTT 60.163 36.000 0.00 0.00 0.00 3.27
164 165 4.342665 TGCTTTTCTATGGGTTTTTCGGTT 59.657 37.500 0.00 0.00 0.00 4.44
165 166 3.892588 TGCTTTTCTATGGGTTTTTCGGT 59.107 39.130 0.00 0.00 0.00 4.69
166 167 4.513198 TGCTTTTCTATGGGTTTTTCGG 57.487 40.909 0.00 0.00 0.00 4.30
167 168 4.381566 CGTTGCTTTTCTATGGGTTTTTCG 59.618 41.667 0.00 0.00 0.00 3.46
168 169 5.525199 TCGTTGCTTTTCTATGGGTTTTTC 58.475 37.500 0.00 0.00 0.00 2.29
169 170 5.523438 TCGTTGCTTTTCTATGGGTTTTT 57.477 34.783 0.00 0.00 0.00 1.94
170 171 5.523438 TTCGTTGCTTTTCTATGGGTTTT 57.477 34.783 0.00 0.00 0.00 2.43
171 172 5.523438 TTTCGTTGCTTTTCTATGGGTTT 57.477 34.783 0.00 0.00 0.00 3.27
172 173 5.722021 ATTTCGTTGCTTTTCTATGGGTT 57.278 34.783 0.00 0.00 0.00 4.11
173 174 5.124936 GGTATTTCGTTGCTTTTCTATGGGT 59.875 40.000 0.00 0.00 0.00 4.51
174 175 5.449999 GGGTATTTCGTTGCTTTTCTATGGG 60.450 44.000 0.00 0.00 0.00 4.00
175 176 5.449999 GGGGTATTTCGTTGCTTTTCTATGG 60.450 44.000 0.00 0.00 0.00 2.74
176 177 5.124776 TGGGGTATTTCGTTGCTTTTCTATG 59.875 40.000 0.00 0.00 0.00 2.23
177 178 5.258051 TGGGGTATTTCGTTGCTTTTCTAT 58.742 37.500 0.00 0.00 0.00 1.98
178 179 4.653868 TGGGGTATTTCGTTGCTTTTCTA 58.346 39.130 0.00 0.00 0.00 2.10
179 180 3.492337 TGGGGTATTTCGTTGCTTTTCT 58.508 40.909 0.00 0.00 0.00 2.52
180 181 3.833442 CTGGGGTATTTCGTTGCTTTTC 58.167 45.455 0.00 0.00 0.00 2.29
181 182 2.029380 GCTGGGGTATTTCGTTGCTTTT 60.029 45.455 0.00 0.00 0.00 2.27
182 183 1.544246 GCTGGGGTATTTCGTTGCTTT 59.456 47.619 0.00 0.00 0.00 3.51
183 184 1.173913 GCTGGGGTATTTCGTTGCTT 58.826 50.000 0.00 0.00 0.00 3.91
184 185 0.328258 AGCTGGGGTATTTCGTTGCT 59.672 50.000 0.00 0.00 0.00 3.91
185 186 2.032680 TAGCTGGGGTATTTCGTTGC 57.967 50.000 0.00 0.00 0.00 4.17
186 187 2.350498 CGTTAGCTGGGGTATTTCGTTG 59.650 50.000 0.00 0.00 0.00 4.10
187 188 2.234414 TCGTTAGCTGGGGTATTTCGTT 59.766 45.455 0.00 0.00 0.00 3.85
188 189 1.826720 TCGTTAGCTGGGGTATTTCGT 59.173 47.619 0.00 0.00 0.00 3.85
189 190 2.470821 CTCGTTAGCTGGGGTATTTCG 58.529 52.381 0.00 0.00 0.00 3.46
190 191 2.210961 GCTCGTTAGCTGGGGTATTTC 58.789 52.381 0.00 0.00 45.85 2.17
191 192 2.327200 GCTCGTTAGCTGGGGTATTT 57.673 50.000 0.00 0.00 45.85 1.40
202 203 3.917329 TCGGATAAGGATGCTCGTTAG 57.083 47.619 0.00 0.00 31.38 2.34
203 204 4.659111 TTTCGGATAAGGATGCTCGTTA 57.341 40.909 0.00 0.00 32.25 3.18
204 205 3.536956 TTTCGGATAAGGATGCTCGTT 57.463 42.857 0.00 0.00 0.00 3.85
205 206 3.195661 GTTTTCGGATAAGGATGCTCGT 58.804 45.455 0.00 0.00 0.00 4.18
206 207 2.544267 GGTTTTCGGATAAGGATGCTCG 59.456 50.000 0.00 0.00 0.00 5.03
207 208 2.544267 CGGTTTTCGGATAAGGATGCTC 59.456 50.000 0.00 0.00 34.75 4.26
208 209 2.169769 TCGGTTTTCGGATAAGGATGCT 59.830 45.455 0.00 0.00 39.77 3.79
209 210 2.557317 TCGGTTTTCGGATAAGGATGC 58.443 47.619 0.00 0.00 39.77 3.91
210 211 4.814234 TCATTCGGTTTTCGGATAAGGATG 59.186 41.667 0.00 0.00 34.23 3.51
211 212 5.031066 TCATTCGGTTTTCGGATAAGGAT 57.969 39.130 0.00 0.00 34.23 3.24
212 213 4.081309 ACTCATTCGGTTTTCGGATAAGGA 60.081 41.667 0.00 0.00 34.23 3.36
213 214 4.189231 ACTCATTCGGTTTTCGGATAAGG 58.811 43.478 0.00 0.00 34.23 2.69
214 215 4.026804 CGACTCATTCGGTTTTCGGATAAG 60.027 45.833 0.00 0.00 44.60 1.73
215 216 3.861113 CGACTCATTCGGTTTTCGGATAA 59.139 43.478 0.00 0.00 44.60 1.75
216 217 3.441163 CGACTCATTCGGTTTTCGGATA 58.559 45.455 0.00 0.00 44.60 2.59
217 218 2.268298 CGACTCATTCGGTTTTCGGAT 58.732 47.619 0.00 0.00 44.60 4.18
218 219 1.705256 CGACTCATTCGGTTTTCGGA 58.295 50.000 0.00 0.00 44.60 4.55
228 229 0.457853 TGTACGCTGGCGACTCATTC 60.458 55.000 21.77 0.00 42.83 2.67
229 230 0.458543 CTGTACGCTGGCGACTCATT 60.459 55.000 21.77 0.38 42.83 2.57
230 231 1.139734 CTGTACGCTGGCGACTCAT 59.860 57.895 21.77 1.12 42.83 2.90
231 232 1.520600 TTCTGTACGCTGGCGACTCA 61.521 55.000 21.77 14.36 42.83 3.41
232 233 0.388134 TTTCTGTACGCTGGCGACTC 60.388 55.000 21.77 10.93 42.83 3.36
233 234 0.032952 TTTTCTGTACGCTGGCGACT 59.967 50.000 21.77 2.63 42.83 4.18
234 235 0.863144 TTTTTCTGTACGCTGGCGAC 59.137 50.000 21.77 14.47 42.83 5.19
235 236 3.292426 TTTTTCTGTACGCTGGCGA 57.708 47.368 21.77 2.69 42.83 5.54
250 251 0.996583 TGGCCCGGTCTATCCTTTTT 59.003 50.000 0.00 0.00 0.00 1.94
251 252 0.996583 TTGGCCCGGTCTATCCTTTT 59.003 50.000 0.00 0.00 0.00 2.27
252 253 1.222567 ATTGGCCCGGTCTATCCTTT 58.777 50.000 0.00 0.00 0.00 3.11
253 254 1.697982 GTATTGGCCCGGTCTATCCTT 59.302 52.381 0.00 0.00 0.00 3.36
254 255 1.349067 GTATTGGCCCGGTCTATCCT 58.651 55.000 0.00 0.00 0.00 3.24
255 256 0.323957 GGTATTGGCCCGGTCTATCC 59.676 60.000 0.00 0.00 0.00 2.59
256 257 1.349067 AGGTATTGGCCCGGTCTATC 58.651 55.000 0.00 0.00 0.00 2.08
257 258 2.254508 GTAGGTATTGGCCCGGTCTAT 58.745 52.381 0.00 0.00 0.00 1.98
258 259 1.708341 GTAGGTATTGGCCCGGTCTA 58.292 55.000 0.00 0.00 0.00 2.59
259 260 1.397390 CGTAGGTATTGGCCCGGTCT 61.397 60.000 0.00 0.00 0.00 3.85
260 261 1.068585 CGTAGGTATTGGCCCGGTC 59.931 63.158 0.00 0.00 0.00 4.79
261 262 3.097921 GCGTAGGTATTGGCCCGGT 62.098 63.158 0.00 0.00 0.00 5.28
262 263 2.280592 GCGTAGGTATTGGCCCGG 60.281 66.667 0.00 0.00 0.00 5.73
263 264 1.153329 TTGCGTAGGTATTGGCCCG 60.153 57.895 0.00 0.00 0.00 6.13
264 265 0.818040 CCTTGCGTAGGTATTGGCCC 60.818 60.000 0.00 0.00 39.39 5.80
265 266 0.818040 CCCTTGCGTAGGTATTGGCC 60.818 60.000 0.00 0.00 43.07 5.36
266 267 0.179468 TCCCTTGCGTAGGTATTGGC 59.821 55.000 4.21 0.00 43.07 4.52
267 268 1.485066 AGTCCCTTGCGTAGGTATTGG 59.515 52.381 4.21 0.00 43.07 3.16
268 269 2.167693 TCAGTCCCTTGCGTAGGTATTG 59.832 50.000 4.21 0.00 43.07 1.90
269 270 2.463752 TCAGTCCCTTGCGTAGGTATT 58.536 47.619 4.21 0.00 43.07 1.89
270 271 2.154567 TCAGTCCCTTGCGTAGGTAT 57.845 50.000 4.21 0.00 43.07 2.73
271 272 1.927487 TTCAGTCCCTTGCGTAGGTA 58.073 50.000 4.21 0.00 43.07 3.08
272 273 1.002087 CTTTCAGTCCCTTGCGTAGGT 59.998 52.381 4.21 0.00 43.07 3.08
273 274 1.726853 CTTTCAGTCCCTTGCGTAGG 58.273 55.000 0.00 0.00 44.33 3.18
274 275 1.079503 GCTTTCAGTCCCTTGCGTAG 58.920 55.000 0.00 0.00 0.00 3.51
275 276 0.685097 AGCTTTCAGTCCCTTGCGTA 59.315 50.000 0.00 0.00 0.00 4.42
276 277 0.179018 AAGCTTTCAGTCCCTTGCGT 60.179 50.000 0.00 0.00 0.00 5.24
277 278 0.519077 GAAGCTTTCAGTCCCTTGCG 59.481 55.000 0.00 0.00 0.00 4.85
278 279 0.519077 CGAAGCTTTCAGTCCCTTGC 59.481 55.000 0.00 0.00 0.00 4.01
293 294 1.591059 CATGCTCTCCTCGGCGAAG 60.591 63.158 12.13 4.75 0.00 3.79
294 295 2.496341 CATGCTCTCCTCGGCGAA 59.504 61.111 12.13 0.00 0.00 4.70
295 296 4.212913 GCATGCTCTCCTCGGCGA 62.213 66.667 11.37 10.14 0.00 5.54
296 297 3.804153 ATGCATGCTCTCCTCGGCG 62.804 63.158 20.33 0.00 0.00 6.46
297 298 1.960250 GATGCATGCTCTCCTCGGC 60.960 63.158 20.33 0.00 0.00 5.54
298 299 0.319727 GAGATGCATGCTCTCCTCGG 60.320 60.000 24.87 0.00 34.34 4.63
299 300 0.663867 CGAGATGCATGCTCTCCTCG 60.664 60.000 27.13 25.91 36.59 4.63
300 301 0.388659 ACGAGATGCATGCTCTCCTC 59.611 55.000 27.13 21.17 36.59 3.71
301 302 0.829333 AACGAGATGCATGCTCTCCT 59.171 50.000 27.13 19.13 36.59 3.69
302 303 2.515926 TAACGAGATGCATGCTCTCC 57.484 50.000 27.13 16.71 36.59 3.71
303 304 4.091220 GCTTATAACGAGATGCATGCTCTC 59.909 45.833 25.18 25.18 36.58 3.20
304 305 3.993081 GCTTATAACGAGATGCATGCTCT 59.007 43.478 20.33 18.03 0.00 4.09
305 306 3.181536 CGCTTATAACGAGATGCATGCTC 60.182 47.826 20.33 13.56 0.00 4.26
306 307 2.733552 CGCTTATAACGAGATGCATGCT 59.266 45.455 20.33 4.11 0.00 3.79
307 308 2.731451 TCGCTTATAACGAGATGCATGC 59.269 45.455 11.82 11.82 33.96 4.06
308 309 4.972286 TTCGCTTATAACGAGATGCATG 57.028 40.909 2.46 0.00 41.18 4.06
309 310 7.834068 ATATTTCGCTTATAACGAGATGCAT 57.166 32.000 0.00 0.00 41.18 3.96
310 311 7.009265 GCTATATTTCGCTTATAACGAGATGCA 59.991 37.037 16.43 0.00 41.18 3.96
311 312 7.331055 GCTATATTTCGCTTATAACGAGATGC 58.669 38.462 16.43 11.22 41.18 3.91
312 313 7.043325 GGGCTATATTTCGCTTATAACGAGATG 60.043 40.741 16.43 7.45 41.18 2.90
313 314 6.979238 GGGCTATATTTCGCTTATAACGAGAT 59.021 38.462 13.68 13.68 41.18 2.75
314 315 6.327934 GGGCTATATTTCGCTTATAACGAGA 58.672 40.000 9.14 6.67 41.18 4.04
315 316 5.519206 GGGGCTATATTTCGCTTATAACGAG 59.481 44.000 9.14 1.51 41.18 4.18
316 317 5.413499 GGGGCTATATTTCGCTTATAACGA 58.587 41.667 0.00 6.19 37.86 3.85
317 318 4.569564 GGGGGCTATATTTCGCTTATAACG 59.430 45.833 2.32 2.32 0.00 3.18
318 319 4.569564 CGGGGGCTATATTTCGCTTATAAC 59.430 45.833 0.00 0.00 0.00 1.89
319 320 4.761975 CGGGGGCTATATTTCGCTTATAA 58.238 43.478 0.00 0.00 0.00 0.98
320 321 3.431207 GCGGGGGCTATATTTCGCTTATA 60.431 47.826 0.00 0.00 40.00 0.98
321 322 2.679930 GCGGGGGCTATATTTCGCTTAT 60.680 50.000 0.00 0.00 40.00 1.73
322 323 1.338389 GCGGGGGCTATATTTCGCTTA 60.338 52.381 0.00 0.00 40.00 3.09
323 324 0.605589 GCGGGGGCTATATTTCGCTT 60.606 55.000 0.00 0.00 40.00 4.68
324 325 1.003718 GCGGGGGCTATATTTCGCT 60.004 57.895 0.00 0.00 40.00 4.93
325 326 1.302192 TGCGGGGGCTATATTTCGC 60.302 57.895 0.00 0.00 42.90 4.70
326 327 1.289109 CGTGCGGGGGCTATATTTCG 61.289 60.000 0.00 0.00 0.00 3.46
327 328 1.574702 GCGTGCGGGGGCTATATTTC 61.575 60.000 0.00 0.00 0.00 2.17
328 329 1.599797 GCGTGCGGGGGCTATATTT 60.600 57.895 0.00 0.00 0.00 1.40
329 330 2.032071 GCGTGCGGGGGCTATATT 59.968 61.111 0.00 0.00 0.00 1.28
330 331 2.923035 AGCGTGCGGGGGCTATAT 60.923 61.111 0.00 0.00 37.83 0.86
331 332 3.612681 GAGCGTGCGGGGGCTATA 61.613 66.667 0.00 0.00 40.16 1.31
340 341 2.557059 TATGGACCACAGAGCGTGCG 62.557 60.000 0.00 0.00 44.91 5.34
341 342 0.391130 TTATGGACCACAGAGCGTGC 60.391 55.000 0.00 0.00 44.91 5.34
342 343 2.205074 GATTATGGACCACAGAGCGTG 58.795 52.381 0.00 0.00 45.92 5.34
343 344 1.139058 GGATTATGGACCACAGAGCGT 59.861 52.381 0.00 0.00 0.00 5.07
344 345 1.414181 AGGATTATGGACCACAGAGCG 59.586 52.381 0.00 0.00 0.00 5.03
345 346 3.388024 TGTAGGATTATGGACCACAGAGC 59.612 47.826 0.00 0.00 0.00 4.09
346 347 5.129485 ACTTGTAGGATTATGGACCACAGAG 59.871 44.000 0.00 0.00 0.00 3.35
347 348 5.030147 ACTTGTAGGATTATGGACCACAGA 58.970 41.667 0.00 0.00 0.00 3.41
348 349 5.359194 ACTTGTAGGATTATGGACCACAG 57.641 43.478 0.00 0.00 0.00 3.66
349 350 5.129815 GGTACTTGTAGGATTATGGACCACA 59.870 44.000 0.00 0.00 0.00 4.17
350 351 5.454329 GGGTACTTGTAGGATTATGGACCAC 60.454 48.000 0.00 0.00 0.00 4.16
351 352 4.657039 GGGTACTTGTAGGATTATGGACCA 59.343 45.833 0.00 0.00 0.00 4.02
352 353 4.041321 GGGGTACTTGTAGGATTATGGACC 59.959 50.000 0.00 0.00 0.00 4.46
353 354 4.041321 GGGGGTACTTGTAGGATTATGGAC 59.959 50.000 0.00 0.00 0.00 4.02
354 355 4.077626 AGGGGGTACTTGTAGGATTATGGA 60.078 45.833 0.00 0.00 0.00 3.41
355 356 4.240323 AGGGGGTACTTGTAGGATTATGG 58.760 47.826 0.00 0.00 0.00 2.74
356 357 4.286291 GGAGGGGGTACTTGTAGGATTATG 59.714 50.000 0.00 0.00 0.00 1.90
357 358 4.077626 TGGAGGGGGTACTTGTAGGATTAT 60.078 45.833 0.00 0.00 0.00 1.28
358 359 3.275497 TGGAGGGGGTACTTGTAGGATTA 59.725 47.826 0.00 0.00 0.00 1.75
359 360 2.046729 TGGAGGGGGTACTTGTAGGATT 59.953 50.000 0.00 0.00 0.00 3.01
360 361 1.654997 TGGAGGGGGTACTTGTAGGAT 59.345 52.381 0.00 0.00 0.00 3.24
361 362 1.095130 TGGAGGGGGTACTTGTAGGA 58.905 55.000 0.00 0.00 0.00 2.94
362 363 2.191981 ATGGAGGGGGTACTTGTAGG 57.808 55.000 0.00 0.00 0.00 3.18
363 364 4.035112 TGTAATGGAGGGGGTACTTGTAG 58.965 47.826 0.00 0.00 0.00 2.74
364 365 4.077552 TGTAATGGAGGGGGTACTTGTA 57.922 45.455 0.00 0.00 0.00 2.41
365 366 2.923908 TGTAATGGAGGGGGTACTTGT 58.076 47.619 0.00 0.00 0.00 3.16
366 367 5.640158 TTATGTAATGGAGGGGGTACTTG 57.360 43.478 0.00 0.00 0.00 3.16
367 368 5.674958 ACATTATGTAATGGAGGGGGTACTT 59.325 40.000 15.11 0.00 45.54 2.24
368 369 5.232347 ACATTATGTAATGGAGGGGGTACT 58.768 41.667 15.11 0.00 45.54 2.73
369 370 5.578157 ACATTATGTAATGGAGGGGGTAC 57.422 43.478 15.11 0.00 45.54 3.34
370 371 6.945636 CTACATTATGTAATGGAGGGGGTA 57.054 41.667 14.57 0.00 46.27 3.69
371 372 5.843019 CTACATTATGTAATGGAGGGGGT 57.157 43.478 14.57 0.00 46.27 4.95
377 378 8.799367 ACTATACGCACTACATTATGTAATGGA 58.201 33.333 14.36 7.44 45.54 3.41
378 379 8.981724 ACTATACGCACTACATTATGTAATGG 57.018 34.615 14.36 7.93 45.54 3.16
412 413 9.225436 TGCTCAAAATTTTCAAAAGGTTTACTT 57.775 25.926 0.00 0.00 42.52 2.24
413 414 8.785329 TGCTCAAAATTTTCAAAAGGTTTACT 57.215 26.923 0.00 0.00 0.00 2.24
414 415 9.489393 CTTGCTCAAAATTTTCAAAAGGTTTAC 57.511 29.630 0.00 0.00 0.00 2.01
415 416 9.225436 ACTTGCTCAAAATTTTCAAAAGGTTTA 57.775 25.926 0.00 0.00 0.00 2.01
416 417 8.109705 ACTTGCTCAAAATTTTCAAAAGGTTT 57.890 26.923 0.00 0.00 0.00 3.27
417 418 7.686438 ACTTGCTCAAAATTTTCAAAAGGTT 57.314 28.000 0.00 0.00 0.00 3.50
418 419 7.686438 AACTTGCTCAAAATTTTCAAAAGGT 57.314 28.000 0.00 0.00 0.00 3.50
465 466 9.952030 TTCATCTTTCATGTACTTGGTAATGTA 57.048 29.630 8.74 1.18 0.00 2.29
466 467 8.730680 GTTCATCTTTCATGTACTTGGTAATGT 58.269 33.333 8.74 0.00 0.00 2.71
467 468 8.184192 GGTTCATCTTTCATGTACTTGGTAATG 58.816 37.037 8.74 7.93 0.00 1.90
468 469 7.888021 TGGTTCATCTTTCATGTACTTGGTAAT 59.112 33.333 8.74 0.00 0.00 1.89
469 470 7.227873 TGGTTCATCTTTCATGTACTTGGTAA 58.772 34.615 8.74 3.74 0.00 2.85
470 471 6.774673 TGGTTCATCTTTCATGTACTTGGTA 58.225 36.000 8.74 0.00 0.00 3.25
471 472 5.630121 TGGTTCATCTTTCATGTACTTGGT 58.370 37.500 8.74 0.00 0.00 3.67
472 473 6.573664 TTGGTTCATCTTTCATGTACTTGG 57.426 37.500 8.74 0.00 0.00 3.61
525 526 8.039603 TGTCAAACACATACCATTAGATTCAC 57.960 34.615 0.00 0.00 0.00 3.18
537 538 7.307493 TGCATCTAGAATGTCAAACACATAC 57.693 36.000 0.00 0.00 45.77 2.39
541 542 9.793252 AATATTTGCATCTAGAATGTCAAACAC 57.207 29.630 0.00 0.00 32.43 3.32
586 587 8.137210 TGAAAATTCAAACCTCGGAAATTTTC 57.863 30.769 19.45 19.45 34.92 2.29
681 698 0.941542 TTTACTGCGCTGTCAACCAC 59.058 50.000 23.87 0.00 0.00 4.16
687 704 0.237498 GGGTTGTTTACTGCGCTGTC 59.763 55.000 23.87 10.27 0.00 3.51
688 705 1.503818 CGGGTTGTTTACTGCGCTGT 61.504 55.000 23.67 23.67 0.00 4.40
689 706 1.206578 CGGGTTGTTTACTGCGCTG 59.793 57.895 13.23 13.23 0.00 5.18
690 707 1.226030 GACGGGTTGTTTACTGCGCT 61.226 55.000 9.73 0.00 0.00 5.92
692 725 0.938713 TTGACGGGTTGTTTACTGCG 59.061 50.000 0.00 0.00 0.00 5.18
716 749 6.291585 CGTGTAACACTGCCATTTTTCTTTTC 60.292 38.462 0.00 0.00 35.74 2.29
717 750 5.518487 CGTGTAACACTGCCATTTTTCTTTT 59.482 36.000 0.00 0.00 35.74 2.27
718 751 5.040635 CGTGTAACACTGCCATTTTTCTTT 58.959 37.500 0.00 0.00 35.74 2.52
719 752 4.499019 CCGTGTAACACTGCCATTTTTCTT 60.499 41.667 0.00 0.00 35.74 2.52
722 755 2.952978 TCCGTGTAACACTGCCATTTTT 59.047 40.909 0.00 0.00 35.74 1.94
723 756 2.577700 TCCGTGTAACACTGCCATTTT 58.422 42.857 0.00 0.00 35.74 1.82
724 757 2.264005 TCCGTGTAACACTGCCATTT 57.736 45.000 0.00 0.00 35.74 2.32
725 758 2.489938 ATCCGTGTAACACTGCCATT 57.510 45.000 0.00 0.00 35.74 3.16
726 759 3.118408 ACATATCCGTGTAACACTGCCAT 60.118 43.478 0.00 0.00 35.74 4.40
727 760 2.235155 ACATATCCGTGTAACACTGCCA 59.765 45.455 0.00 0.00 35.74 4.92
728 761 2.607635 CACATATCCGTGTAACACTGCC 59.392 50.000 0.00 0.00 35.74 4.85
729 762 3.925688 CACATATCCGTGTAACACTGC 57.074 47.619 0.00 0.00 35.74 4.40
774 807 2.901249 ACGAACAAGTTGCTGTGTACT 58.099 42.857 1.81 0.00 0.00 2.73
787 820 3.018973 GCACGGAGCAACGAACAA 58.981 55.556 7.07 0.00 44.79 2.83
805 838 1.375523 AAGCTTACCCGAACTGGCG 60.376 57.895 0.00 0.00 35.87 5.69
806 839 0.605589 ACAAGCTTACCCGAACTGGC 60.606 55.000 0.00 0.00 35.87 4.85
807 840 1.439679 GACAAGCTTACCCGAACTGG 58.560 55.000 0.00 0.00 37.55 4.00
808 841 1.439679 GGACAAGCTTACCCGAACTG 58.560 55.000 0.00 0.00 0.00 3.16
809 842 0.323957 GGGACAAGCTTACCCGAACT 59.676 55.000 20.32 0.00 34.03 3.01
810 843 2.850439 GGGACAAGCTTACCCGAAC 58.150 57.895 20.32 3.56 34.03 3.95
814 847 0.035739 TTGTCGGGACAAGCTTACCC 59.964 55.000 23.29 23.29 45.42 3.69
815 848 3.618171 TTGTCGGGACAAGCTTACC 57.382 52.632 10.04 5.95 45.42 2.85
887 920 6.439599 CGTGGAGATGTAGGAGTAGTATTTG 58.560 44.000 0.00 0.00 0.00 2.32
916 949 1.552792 GATCTATCTACTGCAGGGGGC 59.447 57.143 19.93 0.00 45.13 5.80
969 1002 1.065102 CTACTAGCTGCGCGGAGTTAA 59.935 52.381 28.57 12.15 33.22 2.01
971 1004 1.030488 TCTACTAGCTGCGCGGAGTT 61.030 55.000 28.57 25.23 33.22 3.01
989 1022 3.200593 CCACCATCTGCGCTGCTC 61.201 66.667 9.73 0.00 0.00 4.26
1389 1422 1.572941 GCGAACCGAGGTCAAAACC 59.427 57.895 0.00 0.00 46.87 3.27
1390 1423 1.203313 CGCGAACCGAGGTCAAAAC 59.797 57.895 0.00 0.00 40.02 2.43
1401 1434 1.917921 CGACAGATTAGCGCGAACC 59.082 57.895 12.10 0.00 0.00 3.62
1670 1726 4.353437 GACGAACTCGCCGGTGGT 62.353 66.667 16.49 9.29 44.43 4.16
1768 1824 5.045869 ACGAATACTCCCAAGAATTTCCAGA 60.046 40.000 0.00 0.00 0.00 3.86
2161 2219 3.708563 ATCGACTGAAGCTTAGCTCTC 57.291 47.619 7.36 8.20 38.25 3.20
2162 2220 5.782893 ATAATCGACTGAAGCTTAGCTCT 57.217 39.130 7.36 0.00 38.25 4.09
2163 2221 5.980116 TCAATAATCGACTGAAGCTTAGCTC 59.020 40.000 7.36 1.88 38.25 4.09
2164 2222 5.751028 GTCAATAATCGACTGAAGCTTAGCT 59.249 40.000 0.00 0.00 42.56 3.32
2165 2223 5.331905 CGTCAATAATCGACTGAAGCTTAGC 60.332 44.000 0.00 0.00 0.00 3.09
2166 2224 5.744345 ACGTCAATAATCGACTGAAGCTTAG 59.256 40.000 0.00 0.00 0.00 2.18
2167 2225 5.647589 ACGTCAATAATCGACTGAAGCTTA 58.352 37.500 0.00 0.00 0.00 3.09
2168 2226 4.495422 ACGTCAATAATCGACTGAAGCTT 58.505 39.130 0.00 0.00 0.00 3.74
2169 2227 4.106197 GACGTCAATAATCGACTGAAGCT 58.894 43.478 11.55 0.00 0.00 3.74
2170 2228 3.061797 CGACGTCAATAATCGACTGAAGC 60.062 47.826 17.16 0.00 38.10 3.86
2171 2229 4.340263 TCGACGTCAATAATCGACTGAAG 58.660 43.478 17.16 0.00 39.80 3.02
2172 2230 4.093850 TCTCGACGTCAATAATCGACTGAA 59.906 41.667 17.16 0.00 39.80 3.02
2173 2231 3.619929 TCTCGACGTCAATAATCGACTGA 59.380 43.478 17.16 0.00 39.80 3.41
2174 2232 3.936661 TCTCGACGTCAATAATCGACTG 58.063 45.455 17.16 0.00 39.80 3.51
2175 2233 3.622163 ACTCTCGACGTCAATAATCGACT 59.378 43.478 17.16 0.00 39.80 4.18
2176 2234 3.719840 CACTCTCGACGTCAATAATCGAC 59.280 47.826 17.16 0.00 39.80 4.20
2177 2235 3.373130 ACACTCTCGACGTCAATAATCGA 59.627 43.478 17.16 4.67 42.27 3.59
2178 2236 3.681855 ACACTCTCGACGTCAATAATCG 58.318 45.455 17.16 0.00 37.20 3.34
2179 2237 6.256686 AGTTACACTCTCGACGTCAATAATC 58.743 40.000 17.16 0.00 0.00 1.75
2180 2238 6.192234 AGTTACACTCTCGACGTCAATAAT 57.808 37.500 17.16 0.00 0.00 1.28
2181 2239 5.618056 AGTTACACTCTCGACGTCAATAA 57.382 39.130 17.16 0.30 0.00 1.40
2182 2240 5.213913 GAGTTACACTCTCGACGTCAATA 57.786 43.478 17.16 0.00 41.88 1.90
2183 2241 4.080969 GAGTTACACTCTCGACGTCAAT 57.919 45.455 17.16 0.00 41.88 2.57
2184 2242 3.532892 GAGTTACACTCTCGACGTCAA 57.467 47.619 17.16 0.00 41.88 3.18
2204 2262 8.512036 AGCTTAGCTCTCTCTGAAAAGCTCAG 62.512 46.154 0.00 10.28 43.86 3.35
2205 2263 4.620332 GCTTAGCTCTCTCTGAAAAGCTCA 60.620 45.833 10.31 1.86 43.72 4.26
2206 2264 3.865164 GCTTAGCTCTCTCTGAAAAGCTC 59.135 47.826 10.31 0.00 43.72 4.09
2207 2265 3.515104 AGCTTAGCTCTCTCTGAAAAGCT 59.485 43.478 0.00 8.43 46.35 3.74
2208 2266 3.860641 AGCTTAGCTCTCTCTGAAAAGC 58.139 45.455 0.00 4.29 30.62 3.51
2209 2267 5.477510 TGAAGCTTAGCTCTCTCTGAAAAG 58.522 41.667 7.36 0.00 38.25 2.27
2210 2268 5.011533 ACTGAAGCTTAGCTCTCTCTGAAAA 59.988 40.000 7.36 0.00 38.25 2.29
2211 2269 4.526262 ACTGAAGCTTAGCTCTCTCTGAAA 59.474 41.667 7.36 0.00 38.25 2.69
2212 2270 4.085733 ACTGAAGCTTAGCTCTCTCTGAA 58.914 43.478 7.36 0.00 38.25 3.02
2213 2271 3.694072 GACTGAAGCTTAGCTCTCTCTGA 59.306 47.826 7.36 0.00 38.25 3.27
2214 2272 3.487376 CGACTGAAGCTTAGCTCTCTCTG 60.487 52.174 7.36 8.35 38.25 3.35
2215 2273 2.682856 CGACTGAAGCTTAGCTCTCTCT 59.317 50.000 7.36 0.00 38.25 3.10
2216 2274 2.680841 TCGACTGAAGCTTAGCTCTCTC 59.319 50.000 7.36 1.92 38.25 3.20
2217 2275 2.717390 TCGACTGAAGCTTAGCTCTCT 58.283 47.619 7.36 0.00 38.25 3.10
2218 2276 3.708563 ATCGACTGAAGCTTAGCTCTC 57.291 47.619 7.36 8.20 38.25 3.20
2219 2277 5.782893 ATAATCGACTGAAGCTTAGCTCT 57.217 39.130 7.36 0.00 38.25 4.09
2220 2278 5.980116 TCAATAATCGACTGAAGCTTAGCTC 59.020 40.000 7.36 1.88 38.25 4.09
2221 2279 5.751028 GTCAATAATCGACTGAAGCTTAGCT 59.249 40.000 0.00 0.00 42.56 3.32
2222 2280 5.331905 CGTCAATAATCGACTGAAGCTTAGC 60.332 44.000 0.00 0.00 0.00 3.09
2223 2281 5.744345 ACGTCAATAATCGACTGAAGCTTAG 59.256 40.000 0.00 0.00 0.00 2.18
2224 2282 5.647589 ACGTCAATAATCGACTGAAGCTTA 58.352 37.500 0.00 0.00 0.00 3.09
2225 2283 4.495422 ACGTCAATAATCGACTGAAGCTT 58.505 39.130 0.00 0.00 0.00 3.74
2226 2284 4.106197 GACGTCAATAATCGACTGAAGCT 58.894 43.478 11.55 0.00 0.00 3.74
2227 2285 3.061797 CGACGTCAATAATCGACTGAAGC 60.062 47.826 17.16 0.00 38.10 3.86
2228 2286 4.340263 TCGACGTCAATAATCGACTGAAG 58.660 43.478 17.16 0.00 39.80 3.02
2229 2287 4.093850 TCTCGACGTCAATAATCGACTGAA 59.906 41.667 17.16 0.00 39.80 3.02
2230 2288 3.619929 TCTCGACGTCAATAATCGACTGA 59.380 43.478 17.16 0.00 39.80 3.41
2231 2289 3.936661 TCTCGACGTCAATAATCGACTG 58.063 45.455 17.16 0.00 39.80 3.51
2232 2290 3.622163 ACTCTCGACGTCAATAATCGACT 59.378 43.478 17.16 0.00 39.80 4.18
2233 2291 3.719840 CACTCTCGACGTCAATAATCGAC 59.280 47.826 17.16 0.00 39.80 4.20
2234 2292 3.373130 ACACTCTCGACGTCAATAATCGA 59.627 43.478 17.16 4.67 42.27 3.59
2235 2293 3.681855 ACACTCTCGACGTCAATAATCG 58.318 45.455 17.16 0.00 37.20 3.34
2236 2294 6.256686 AGTTACACTCTCGACGTCAATAATC 58.743 40.000 17.16 0.00 0.00 1.75
2237 2295 6.192234 AGTTACACTCTCGACGTCAATAAT 57.808 37.500 17.16 0.00 0.00 1.28
2238 2296 5.618056 AGTTACACTCTCGACGTCAATAA 57.382 39.130 17.16 0.30 0.00 1.40
2239 2297 5.213913 GAGTTACACTCTCGACGTCAATA 57.786 43.478 17.16 0.00 41.88 1.90
2240 2298 4.080969 GAGTTACACTCTCGACGTCAAT 57.919 45.455 17.16 0.00 41.88 2.57
2241 2299 3.532892 GAGTTACACTCTCGACGTCAA 57.467 47.619 17.16 0.00 41.88 3.18
2261 2319 8.512036 AGCTTAGCTCTCTCTGAAAAGCTCAG 62.512 46.154 0.00 10.28 43.86 3.35
2262 2320 4.620332 GCTTAGCTCTCTCTGAAAAGCTCA 60.620 45.833 10.31 1.86 43.72 4.26
2263 2321 3.865164 GCTTAGCTCTCTCTGAAAAGCTC 59.135 47.826 10.31 0.00 43.72 4.09
2264 2322 3.515104 AGCTTAGCTCTCTCTGAAAAGCT 59.485 43.478 0.00 8.43 46.35 3.74
2265 2323 3.860641 AGCTTAGCTCTCTCTGAAAAGC 58.139 45.455 0.00 4.29 30.62 3.51
2266 2324 5.477510 TGAAGCTTAGCTCTCTCTGAAAAG 58.522 41.667 7.36 0.00 38.25 2.27
2267 2325 5.011533 ACTGAAGCTTAGCTCTCTCTGAAAA 59.988 40.000 7.36 0.00 38.25 2.29
2268 2326 4.526262 ACTGAAGCTTAGCTCTCTCTGAAA 59.474 41.667 7.36 0.00 38.25 2.69
2269 2327 4.085733 ACTGAAGCTTAGCTCTCTCTGAA 58.914 43.478 7.36 0.00 38.25 3.02
2270 2328 3.694072 GACTGAAGCTTAGCTCTCTCTGA 59.306 47.826 7.36 0.00 38.25 3.27
2271 2329 3.487376 CGACTGAAGCTTAGCTCTCTCTG 60.487 52.174 7.36 8.35 38.25 3.35
2272 2330 2.682856 CGACTGAAGCTTAGCTCTCTCT 59.317 50.000 7.36 0.00 38.25 3.10
2273 2331 2.680841 TCGACTGAAGCTTAGCTCTCTC 59.319 50.000 7.36 1.92 38.25 3.20
2274 2332 2.717390 TCGACTGAAGCTTAGCTCTCT 58.283 47.619 7.36 0.00 38.25 3.10
2339 2397 4.900635 ACAGGGTTTTATTGATCGATGC 57.099 40.909 0.54 0.00 0.00 3.91
2355 2413 3.252215 TCACTTTTGCAATTCGTACAGGG 59.748 43.478 0.00 0.00 0.00 4.45
2414 2496 3.599792 CTTGAGTTGCGGCCTTGCG 62.600 63.158 0.00 0.00 37.81 4.85
2415 2497 2.256461 CTTGAGTTGCGGCCTTGC 59.744 61.111 0.00 0.00 0.00 4.01
2416 2498 1.576421 GTCTTGAGTTGCGGCCTTG 59.424 57.895 0.00 0.00 0.00 3.61
2417 2499 1.961277 CGTCTTGAGTTGCGGCCTT 60.961 57.895 0.00 0.00 0.00 4.35
2418 2500 2.357517 CGTCTTGAGTTGCGGCCT 60.358 61.111 0.00 0.00 0.00 5.19
2419 2501 3.423154 CCGTCTTGAGTTGCGGCC 61.423 66.667 0.00 0.00 37.69 6.13
2514 2597 0.749649 TGCGTGCACCCTTCAAAAAT 59.250 45.000 12.15 0.00 0.00 1.82
2525 2609 1.277495 GGTGATTTGCTTGCGTGCAC 61.277 55.000 6.82 6.82 43.20 4.57
2543 2634 7.195646 ACACTTCATATGATTGCAAATAACGG 58.804 34.615 6.17 0.00 0.00 4.44
2560 2651 2.223249 GCACAACACGTCAACACTTCAT 60.223 45.455 0.00 0.00 0.00 2.57
2565 2656 2.538132 GGTAAGCACAACACGTCAACAC 60.538 50.000 0.00 0.00 0.00 3.32
2566 2657 1.666700 GGTAAGCACAACACGTCAACA 59.333 47.619 0.00 0.00 0.00 3.33
2567 2658 1.937899 AGGTAAGCACAACACGTCAAC 59.062 47.619 0.00 0.00 0.00 3.18
2568 2659 2.319136 AGGTAAGCACAACACGTCAA 57.681 45.000 0.00 0.00 0.00 3.18
2569 2660 2.319136 AAGGTAAGCACAACACGTCA 57.681 45.000 0.00 0.00 0.00 4.35
2570 2661 3.064271 TGAAAAGGTAAGCACAACACGTC 59.936 43.478 0.00 0.00 0.00 4.34
2571 2662 3.011119 TGAAAAGGTAAGCACAACACGT 58.989 40.909 0.00 0.00 0.00 4.49
2572 2663 3.064820 ACTGAAAAGGTAAGCACAACACG 59.935 43.478 0.00 0.00 0.00 4.49
2636 2728 8.859090 TGAGCTCATCCAAAAGAAATCTTAAAA 58.141 29.630 13.74 0.00 34.61 1.52
2679 2773 6.759272 TGATAGACCACCTATATCAACAAGC 58.241 40.000 0.00 0.00 38.17 4.01
2691 2785 7.454225 GGCTTAATAGAAATGATAGACCACCT 58.546 38.462 0.00 0.00 0.00 4.00
2692 2786 6.369065 CGGCTTAATAGAAATGATAGACCACC 59.631 42.308 0.00 0.00 0.00 4.61
2715 2809 1.153168 GGTGGATGTGACATCCCGG 60.153 63.158 34.61 0.00 37.40 5.73
2731 2825 9.866655 ACATTATGTGTAGATGGATTTAATGGT 57.133 29.630 0.00 0.00 39.91 3.55
2762 2856 4.607293 AGCGGCTCATAAATGACATAGA 57.393 40.909 0.00 0.00 32.50 1.98
2833 2927 1.672356 CGCCCTCAAGGTGTTCAGG 60.672 63.158 0.00 0.00 41.64 3.86
2891 2985 0.030638 TTCCTCGCAGCTTTGCAAAC 59.969 50.000 8.05 5.75 34.41 2.93
2892 2986 0.311790 CTTCCTCGCAGCTTTGCAAA 59.688 50.000 12.14 12.14 34.41 3.68
2921 3015 1.811266 CCATTGAGACGTCGCTGGG 60.811 63.158 20.11 14.02 0.00 4.45
2936 3030 4.078688 TGATTTATCCCCATTCACCACCAT 60.079 41.667 0.00 0.00 0.00 3.55
2937 3031 3.270696 TGATTTATCCCCATTCACCACCA 59.729 43.478 0.00 0.00 0.00 4.17
2943 3037 2.582052 GCCGTGATTTATCCCCATTCA 58.418 47.619 0.00 0.00 0.00 2.57
2946 3040 0.250727 CCGCCGTGATTTATCCCCAT 60.251 55.000 0.00 0.00 0.00 4.00
2952 3046 1.663695 CCTGAACCGCCGTGATTTAT 58.336 50.000 0.00 0.00 0.00 1.40
2953 3047 1.022451 GCCTGAACCGCCGTGATTTA 61.022 55.000 0.00 0.00 0.00 1.40
2974 3068 3.758554 GTGATTGTTTGGTGCCAGTCTAT 59.241 43.478 0.00 0.00 0.00 1.98
2975 3069 3.146066 GTGATTGTTTGGTGCCAGTCTA 58.854 45.455 0.00 0.00 0.00 2.59
2979 3073 0.039256 CCGTGATTGTTTGGTGCCAG 60.039 55.000 0.00 0.00 0.00 4.85
2993 3087 4.386951 CACATCCCCACGCCGTGA 62.387 66.667 20.57 0.00 35.23 4.35
3019 3113 0.332972 AGAATGTGGGCTCCCTTTCC 59.667 55.000 6.50 0.00 36.94 3.13
3021 3115 1.075601 TCAGAATGTGGGCTCCCTTT 58.924 50.000 6.50 0.00 37.40 3.11
3034 3128 1.089920 GCGCCACAGACATTCAGAAT 58.910 50.000 0.00 0.00 0.00 2.40
3047 3142 1.671556 CCACCTAAAAATTGGCGCCAC 60.672 52.381 32.95 1.51 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.